RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15495
         (158 letters)



>gnl|CDD|202399 pfam02793, HRM, Hormone receptor domain.  This extracellular
          domain contains four conserved cysteines that probably
          for disulphide bridges. The domain is found in a
          variety of hormone receptors. It may be a ligand
          binding domain.
          Length = 63

 Score = 80.1 bits (198), Expect = 8e-21
 Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 24 TLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFW 83
           L CP  +DG  CW  T AG T   PCP++   FD    A R C ENGTW +HP      
Sbjct: 1  GLGCPRTWDGILCWPRTPAGTTVEVPCPDYFYDFDPTGNASRNCTENGTWSEHP------ 54

Query: 84 SNYTTCIDI 92
           NY+ C   
Sbjct: 55 PNYSNCTSN 63


>gnl|CDD|214468 smart00008, HormR, Domain present in hormone receptors. 
          Length = 70

 Score = 66.0 bits (161), Expect = 3e-15
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 23 STLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKF 82
          + L CP  +DG  CW  T AG+    PCP +  GF  +  A R C ENG W         
Sbjct: 1  TDLGCPATWDGIICWPQTPAGQLVEVPCPKYFSGFSYKTGASRNCTENGGWSPPF----- 55

Query: 83 WSNYTTCIDIED 94
            NY+ C   + 
Sbjct: 56 -PNYSNCTSNDY 66


>gnl|CDD|140321 PTZ00300, PTZ00300, pyruvate kinase; Provisional.
          Length = 454

 Score = 28.5 bits (63), Expect = 1.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 7/40 (17%)

Query: 30  MFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLE 69
           +F+G  C    L+GETA+   PN +V     ++  R CLE
Sbjct: 276 VFNGADC--VMLSGETAKGKYPNEVV-----QYMARICLE 308


>gnl|CDD|235217 PRK04069, PRK04069, serine-protein kinase RsbW; Provisional.
          Length = 161

 Score = 28.0 bits (63), Expect = 1.6
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 13/74 (17%)

Query: 91  DIEDLKVYLFLSC------CFNGKKNGLIINLRFALR------TCLENGTWFQHPVTRKF 138
           DIED+K+ +  +C       +   + G  I++RF +          +NG  F +   +  
Sbjct: 39  DIEDMKIAVSEACTNAVQHAYKEDEVG-EIHIRFEIYEDRLEIVVADNGVSFDYETLKSK 97

Query: 139 WSNYTTCIDIEDLK 152
              Y     IEDL+
Sbjct: 98  LGPYDISKPIEDLR 111


>gnl|CDD|119202 pfam10682, UL40, Glycoprotein of human cytomegalovirus HHV-5.
          This is glycoprotein UL40 from human cytomegalovirus or
          herpesvirus 5. The signal sequence of the UL40
          polypeptide contains an HLA-E ligand identical with
          HLA-Cw*0304. The first 37 residues of UL40, including
          this ligand, are predicted to encode a signal peptide.
          The virus thus prevents the lysis by NK (natural
          killer) cells of the cell it has invaded.
          Length = 220

 Score = 27.8 bits (61), Expect = 2.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 1  MYHLGTSSLTTLNFMFQTLSLDSTLYCPTMFDGW 34
          +     +  TT   MF      +T YCP +F+GW
Sbjct: 30 LCSPAETPTTTAGAMFAHGPKSNTSYCPKVFEGW 63


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.139    0.481 

Gapped
Lambda     K      H
   0.267   0.0633    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,849,531
Number of extensions: 681816
Number of successful extensions: 561
Number of sequences better than 10.0: 1
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 12
Length of query: 158
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 69
Effective length of database: 6,990,096
Effective search space: 482316624
Effective search space used: 482316624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.2 bits)