RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15495
(158 letters)
>3n7s_A Calcitonin gene-related peptide type 1 receptor; GPCR, class B
GPCR, antagonist, olcegepant, telcagepant, MIG membrane
protein; HET: 3N6 3N7; 2.10A {Homo sapiens} PDB: 3n7r_A*
3n7p_A* 3aqf_B
Length = 115
Score = 92.9 bits (230), Expect = 2e-25
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 13 NFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGT 72
M + +YC +DGW CWN AG + CP++ FD + C ++G
Sbjct: 33 KIMQDPIQQAEGVYCNRTWDGWLCWNDVAAGTESMQLCPDYFQDFDPSEKVTKICDQDGN 92
Query: 73 WFQHPVTRKFWSNYTTC 89
WF+HP + + W+NYT C
Sbjct: 93 WFRHPASNRTWTNYTQC 109
Score = 43.6 bits (102), Expect = 2e-06
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 117 RFALRTCLENGTWFQHPVTRKFWSNYTTC 145
+ C ++G WF+HP + + W+NYT C
Sbjct: 81 EKVTKICDQDGNWFRHPASNRTWTNYTQC 109
>3c5t_A Glucagon-like peptide 1 receptor; ligand-bound G protein-coupled
receptor extracellular domain protein coupled receptor,
glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens}
PDB: 3c59_A* 3iol_A*
Length = 122
Score = 89.8 bits (222), Expect = 4e-24
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 12 LNFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGF--DSRRFALRTCLE 69
+ + + L+C FD ++CW G CP ++ + R C
Sbjct: 24 QRSLTEDPPPATDLFCNRTFDEYACWPDGEPGSFVNVSCPWYLPWASSVPQGHVYRFCTA 83
Query: 70 NGTWFQHPVTRKFWSNYTTCIDIEDLK 96
G W Q + W + + C + + +
Sbjct: 84 EGLWLQKDNSSLPWRDLSECEESKRGE 110
>2qkh_A Glucose-dependent insulinotropic polypeptide receptor; GPCR,
incretin, hormone-GPCR complex, extracellular domain,
ligand binding domain, ECD; HET: QKH; 1.90A {Homo
sapiens}
Length = 135
Score = 82.5 bits (203), Expect = 5e-21
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 23 STLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSR--RFALRTCLENGTWFQHPVTR 80
S L C FD + CW+ TAR CP ++ F LR C +G W
Sbjct: 54 SGLACNGSFDMYVCWDYAAPNATARASCPWYLPWHHHVAAGFVLRQCGSDGQW------- 106
Query: 81 KFWSNYTTCIDIEDLKVYL 99
W ++T C + E + +L
Sbjct: 107 GLWRDHTQCENPEKNEAFL 125
>1u34_A CRFR2B, corticotropin releasing factor receptor 2; beta sheets and
loops, signaling protein; NMR {Mus musculus} SCOP:
g.76.1.1 PDB: 2jnd_A* 2jnc_A
Length = 119
Score = 73.3 bits (179), Expect = 1e-17
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 22 DSTLYCPTMFDG-WSCWNATLAGETARTPCPNFI--VGFDSRRFALRTCLENGTWFQHPV 78
YC T D +CW + G PCP + + +++ R A R CLENGTW
Sbjct: 41 GPYTYCNTTLDQIGTCWPQSAPGALVERPCPEYFNGIKYNTTRNAYRECLENGTW----- 95
Query: 79 TRKFWSNYTTCIDIEDLK 96
NY+ C I D K
Sbjct: 96 --ASRVNYSHCEPILDDK 111
Score = 33.6 bits (76), Expect = 0.008
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 117 RFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVSTID 157
R A R CLENGTW NY+ C I D K D
Sbjct: 83 RNAYRECLENGTW-------ASRVNYSHCEPILDDKQRKYD 116
>2l27_A Seven transmembrane helix receptor; CRF, ECD1, family B1, alpha
helical CRF, membrane P peptide binding protein; NMR
{Homo sapiens}
Length = 84
Score = 69.7 bits (170), Expect = 9e-17
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 23 STLYCPTMFDG-WSCWNATLAGETARTPCPNFIVG--FDSRRFALRTCLENGTWFQHPVT 79
S L C D +CW + AG+ PCP F G +++ R CL NG+W
Sbjct: 16 SGLQCNASVDLIGTCWPRSPAGQLVVRPCPAFFYGVRYNTTNNGYRECLANGSW------ 69
Query: 80 RKFWSNYTTCIDIED 94
NY+ C +I +
Sbjct: 70 -AARVNYSECQEILN 83
Score = 31.2 bits (70), Expect = 0.035
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 7/34 (20%)
Query: 117 RFALRTCLENGTWFQHPVTRKFWSNYTTCIDIED 150
R CL NG+W NY+ C +I +
Sbjct: 57 NNGYRECLANGSW-------AARVNYSECQEILN 83
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid
hormone receptor...; GPCR, extracellular domain, PTHRP,
PTH, PThr1, sugar transpo transport, membrane protein;
HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Length = 539
Score = 71.9 bits (176), Expect = 1e-15
Identities = 22/67 (32%), Positives = 32/67 (47%)
Query: 26 YCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSN 85
C +D CW GE PCP++I F+ + A R C NG+W P + W+N
Sbjct: 453 PCLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWAN 512
Query: 86 YTTCIDI 92
Y+ C+
Sbjct: 513 YSECVKF 519
>2xdg_A Growth hormone-releasing hormone receptor; signaling protein,
membrane protein; 1.95A {Homo sapiens}
Length = 92
Score = 66.7 bits (162), Expect = 2e-15
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 22 DSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFAL-RTCLENGTWFQHP 77
+TL CP +DG CW +GE PCP+F F S A+ R C G P
Sbjct: 19 QTTLGCPATWDGLLCWPTAGSGEWVTLPCPDFFSHFSSESGAVKRDCTITGWSEPFP 75
Score = 25.5 bits (55), Expect = 4.9
Identities = 4/23 (17%), Positives = 4/23 (17%)
Query: 111 GLIINLRFALRTCLENGTWFQHP 133
R C G P
Sbjct: 53 HFSSESGAVKRDCTITGWSEPFP 75
>2x57_A Vasoactive intestinal polypeptide receptor 2; G-protein coupled
receptor, circadian rhythm, MALE reproduct hormone
binding, growth, transducer; 2.10A {Homo sapiens}
Length = 116
Score = 66.7 bits (162), Expect = 3e-15
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 22 DSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSR-RFALRTCLENGTWFQHP 77
+ C ++D +CW GET PCP F S+ + C +G P
Sbjct: 45 EKHKACSGVWDNITCWRPANVGETVTVPCPKVFSNFYSKAGNISKNCTSDGWSETFP 101
Score = 28.2 bits (62), Expect = 0.60
Identities = 3/19 (15%), Positives = 5/19 (26%)
Query: 115 NLRFALRTCLENGTWFQHP 133
+ C +G P
Sbjct: 83 KAGNISKNCTSDGWSETFP 101
>2jod_A Pituitary adenylate cyclase-activating polypeptide type I
receptor; protein/peptide complex, signaling protein;
NMR {Homo sapiens} SCOP: g.76.1.1
Length = 106
Score = 57.1 bits (137), Expect = 1e-11
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 22 DSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDS---RRFALRTCLENGTWFQHP 77
DS+ CP M+D +CW GE CP F+ R C E+G P
Sbjct: 33 DSSPGCPGMWDNITCWKPAHVGEMVLVSCPELFRIFNPDQDMGVVSRNCTEDGWSEPFP 91
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary
adenylate cyclase 1 receptor-short...; G-protein coupled
receptor; HET: MAL; 1.80A {Escherichia coli} PDB:
3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Length = 475
Score = 41.4 bits (97), Expect = 5e-05
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 22 DSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGF---DSRRFALRTCLENGTWFQHP 77
DS+ CP M+D +CW GE CP F R C E+G P
Sbjct: 399 DSSPGCPGMWDNITCWKPAHVGEMVLVSCPELFRIFNPDQDMGVVSRNCTEDGWSEPFP 457
>4dlo_A Brain-specific angiogenesis inhibitor 3; GAIN domain, includes
GPS motif, autoproteolytic fold, extra signaling
protein; HET: NAG FUL; 2.30A {Homo sapiens}
Length = 382
Score = 35.2 bits (79), Expect = 0.005
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 26 YCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGT 72
CP + W T AG+ A CP ++ R C +
Sbjct: 19 ICPEDYLMSMVWKRTPAGDLAFNQCPL-----NATGTTSRRCSLSLH 60
>4dlq_A Latrophilin-1; GAIN domain, includes the GPS motif, hormone binding
domain, autoproteolysis, A-latrotoxin, extracellular
domain; HET: NAG; 1.85A {Rattus norvegicus}
Length = 381
Score = 33.8 bits (75), Expect = 0.016
Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 10/89 (11%)
Query: 18 TLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHP 77
L + L+C W AT G PCP G A CL +
Sbjct: 15 NLHVSPELFCEPREVRRVQWPATQQGMLVERPCPKGTRG-----IASFQCLPALGLWNPR 69
Query: 78 VTRKFWSNYTTCIDIEDLKVYLFLSCCFN 106
+ + C +V + N
Sbjct: 70 -----GPDLSNCTSPWVNQVAQKIKSGEN 93
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 29.7 bits (66), Expect = 0.39
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 13/78 (16%)
Query: 65 RTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIIN--LRF---- 118
RTC G+W + C I + + F + + + ++ + F
Sbjct: 49 RTCRSTGSWSTLKTQDQKTVRKAECRAIHCPRPHDFENGEYWPRSPYYNVSDEISFHCYD 108
Query: 119 -------ALRTCLENGTW 129
A RTC NG W
Sbjct: 109 GYTLRGSANRTCQVNGRW 126
Score = 27.7 bits (61), Expect = 2.1
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 121 RTCLENGTWFQHPVTRKFWSNYTTCIDIE 149
RTC G+W + C I
Sbjct: 49 RTCRSTGSWSTLKTQDQKTVRKAECRAIH 77
Score = 26.2 bits (57), Expect = 7.0
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 12/79 (15%)
Query: 63 ALRTCLENGTWFQHPVTRKFWSNYTTCIDIED-----LKVYLFLSCCFNGKKNGLIINLR 117
RTC E G+W + + Y T ++ + L + +G G +
Sbjct: 176 QRRTCQEGGSWSGTEPSCQDSFMYDTPQEVAEAFLSSLTETIEGVDAEDGHGPGEQQKRK 235
Query: 118 FAL-------RTCLENGTW 129
L + +G+
Sbjct: 236 IVLDPSGSMNIYLVLDGSG 254
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 27.4 bits (60), Expect = 2.3
Identities = 11/74 (14%), Positives = 17/74 (22%), Gaps = 9/74 (12%)
Query: 65 RTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLR------- 117
C N W + C + + S GL +
Sbjct: 110 VWCQANNMWGPTRLPTCVSVFPLECPALPMIHNGHHTSENVGSIAPGLSVTYSCESGYLL 169
Query: 118 --FALRTCLENGTW 129
+ CL +G W
Sbjct: 170 VGEKIINCLSSGKW 183
>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich,
fibronecti receptor, cell adhesion-immune system
complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB:
3vi4_A*
Length = 632
Score = 27.1 bits (59), Expect = 3.2
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 16/94 (17%)
Query: 75 QHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPV 134
Q +T+ D ++K+YL F K + + I L F+L + P
Sbjct: 526 QATLTQTLLIQNGAREDCREMKIYLRNESEFRDKLSPIHIALNFSLDPQAPVDSHGLRPA 585
Query: 135 TRKFWSNYTT--------------CIDIEDLKVS 154
+ C+ DL++
Sbjct: 586 LHYQSKSRIEDKAQILLDCGEDNICVP--DLQLE 617
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 5.2
Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 15/99 (15%)
Query: 66 TCLENGTWFQHPVTRK-----FWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLI-INLRFA 119
T + + V K FW N C E + L + N +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-QKLLYQIDPNWTSRSDHSSN 222
Query: 120 LRTCLENGTWFQHPVTRKF-WSNYTTCI----DIEDLKV 153
++ + Q + R Y C+ ++++ K
Sbjct: 223 IKLRIH---SIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Score = 26.0 bits (56), Expect = 7.9
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 1 MYHLGTSSLTTLNFMFQTLSLD 22
+HL +F+ + LD
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLD 499
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB:
3bg0_B 3iko_B
Length = 442
Score = 26.2 bits (57), Expect = 6.3
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 8/49 (16%)
Query: 83 WSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQ 131
WS ID K+Y LS G F+L+ +W
Sbjct: 233 WSTGGCSIDKNISKIYKLLS--------GSPFEGLFSLKELESEFSWLC 273
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.139 0.481
Gapped
Lambda K H
0.267 0.0332 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,498,237
Number of extensions: 135686
Number of successful extensions: 557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 513
Number of HSP's successfully gapped: 74
Length of query: 158
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 72
Effective length of database: 4,300,587
Effective search space: 309642264
Effective search space used: 309642264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.3 bits)