RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15495
         (158 letters)



>d1u34a_ g.76.1.1 (A:) Corticotropin releasing factor receptor 2,
           CRFR-2beta {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 119

 Score = 72.3 bits (177), Expect = 9e-18
 Identities = 27/78 (34%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 23  STLYCPTMFDGW-SCWNATLAGETARTPCPNFIVGFD--SRRFALRTCLENGTWFQHPVT 79
              YC T  D   +CW  +  G     PCP +  G    + R A R CLENGTW      
Sbjct: 42  PYTYCNTTLDQIGTCWPQSAPGALVERPCPEYFNGIKYNTTRNAYRECLENGTWAS---- 97

Query: 80  RKFWSNYTTCIDIEDLKV 97
                NY+ C  I D K 
Sbjct: 98  ---RVNYSHCEPILDDKQ 112


>d2joda1 g.76.1.1 (A:17-122) Pituitary adenylate
          cyclase-activating polypeptide type I receptor {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 106

 Score = 68.1 bits (166), Expect = 2e-16
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 22 DSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDS---RRFALRTCLENGTWFQHP 77
          DS+  CP M+D  +CW     GE     CP     F+         R C E+G     P
Sbjct: 33 DSSPGCPGMWDNITCWKPAHVGEMVLVSCPELFRIFNPDQDMGVVSRNCTEDGWSEPFP 91


>d1ly2a2 g.18.1.1 (A:67-129) Complement receptor 2, cr2 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 63

 Score = 23.8 bits (51), Expect = 4.4
 Identities = 6/28 (21%), Positives = 8/28 (28%), Gaps = 8/28 (28%)

Query: 65 RTCLENGTWFQHPVTRKFWSNYTTCIDI 92
            C  N  W    +         TC+ I
Sbjct: 44 VWCQANNMWGPTRL--------PTCVSI 63



 Score = 23.8 bits (51), Expect = 4.4
 Identities = 6/28 (21%), Positives = 8/28 (28%), Gaps = 8/28 (28%)

Query: 121 RTCLENGTWFQHPVTRKFWSNYTTCIDI 148
             C  N  W    +         TC+ I
Sbjct: 44  VWCQANNMWGPTRL--------PTCVSI 63


>d1hynp_ d.112.1.2 (P:) Erythrocite membrane Band 3 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 293

 Score = 24.8 bits (54), Expect = 5.8
 Identities = 4/11 (36%), Positives = 4/11 (36%)

Query: 62 FALRTCLENGT 72
            LR     GT
Sbjct: 53 LELRRVFTKGT 63



 Score = 24.8 bits (54), Expect = 5.8
 Identities = 4/11 (36%), Positives = 4/11 (36%)

Query: 118 FALRTCLENGT 128
             LR     GT
Sbjct: 53  LELRRVFTKGT 63


>d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 200

 Score = 24.5 bits (53), Expect = 7.1
 Identities = 5/18 (27%), Positives = 9/18 (50%)

Query: 90  IDIEDLKVYLFLSCCFNG 107
           ++I D+   L     +NG
Sbjct: 24  VEIADIAHGLARVARWNG 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.139    0.481 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 656,307
Number of extensions: 29927
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 29
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (22.9 bits)