BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15498
(635 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B6A|A Chain A, Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 586 bits (1510), Expect = e-167, Method: Compositional matrix adjust.
Identities = 274/367 (74%), Positives = 315/367 (85%)
Query: 269 QTTPPSIPVSQLYPDGNFPVGQEMEYPTLKDGRTGKDRFTNEEKKAIDRLHNDMYNEARQ 328
QT PPS+P+ LYP+G FP GQE EYP +DGRT R T+EEKKA+D+ +++N+ R+
Sbjct: 112 QTDPPSVPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFRE 171
Query: 329 AAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCAAH 388
AAEAHRQVRK++M WIKPGMTMIEI E+LE SR LI E+GL AGLAFPTGCS N+CAAH
Sbjct: 172 AAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAH 231
Query: 389 YTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAVRDATNTGIKAA 448
YTPN GD TVL++DDI KIDFGTHI+GRIIDCAFT+ +N KYD L++AV+DATNTGIK A
Sbjct: 232 YTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCA 291
Query: 449 GIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVPIVRGGE 508
GIDV LC+VG AIQEVMESYEVEIDGKTYQVK IRNLNGHSI YRIHAGKTVPIV+GGE
Sbjct: 292 GIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIVKGGE 351
Query: 509 GTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFEASYIPLRLASSKSLLNTINKNFG 568
T MEE E YAIETFGSTGKG+VHDDM+ SHYMKNF+ ++P+RL +K LLN IN+NFG
Sbjct: 352 ATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFG 411
Query: 569 TLAFCKRWLDRAGCTKYQMALKDLCDKGIVEAYPPLCDIKGSYTAQFEHTIVLRPTCKEV 628
TLAFC+RWLDR G +KY MALK+LCD GIV+ YPPLCDIKGSYTAQFEHTI+LRPTCKEV
Sbjct: 412 TLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPPLCDIKGSYTAQFEHTILLRPTCKEV 471
Query: 629 ISRGDDY 635
+SRGDDY
Sbjct: 472 VSRGDDY 478
Score = 196 bits (498), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 92/133 (69%), Positives = 109/133 (81%)
Query: 106 NGNFPVGQEMEYPTLKDGRTGKDRFTNEEKKAIDRLHNDMYNEARQAAEAHRQVRKHMMG 165
NG FP GQE EYP +DGRT R T+EEKKA+D+ +++N+ R+AAEAHRQVRK++M
Sbjct: 126 NGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMS 185
Query: 166 WIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCAAHYTPNNGDKTVLEFD 225
WIKPGMTMIEI E+LE SR LI E+GL AGLAFPTGCS N+CAAHYTPN GD TVL++D
Sbjct: 186 WIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYD 245
Query: 226 DITKIDFGTHING 238
DI KIDFGTHI+G
Sbjct: 246 DICKIDFGTHISG 258
>pdb|1QZY|A Chain A, Human Methionine Aminopeptidase In Complex With Bengamide
Inhibitor Laf153 And Cobalt
pdb|1KQ0|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With D-
Methionine
pdb|1KQ9|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With L-
Methionine
pdb|1BN5|A Chain A, Human Methionine Aminopeptidase 2
pdb|1BOA|A Chain A, Human Methionine Aminopeptidase 2 Complexed With
Angiogenesis Inhibitor Fumagillin
Length = 478
Score = 585 bits (1509), Expect = e-167, Method: Compositional matrix adjust.
Identities = 273/367 (74%), Positives = 315/367 (85%)
Query: 269 QTTPPSIPVSQLYPDGNFPVGQEMEYPTLKDGRTGKDRFTNEEKKAIDRLHNDMYNEARQ 328
QT PPS+P+ LYP+G FP GQE EYP +DGRT R T+EEKKA+D+ +++N+ R+
Sbjct: 112 QTDPPSVPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFRE 171
Query: 329 AAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCAAH 388
AAEAHRQVRK++M WIKPGMTMIEI E+LE SR LI E+GL AGLAFPTGCS N+CAAH
Sbjct: 172 AAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAH 231
Query: 389 YTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAVRDATNTGIKAA 448
YTPN GD TVL++DDI KIDFGTHI+GRIIDCAFT+ +N KYD L++AV+DATNTGIK A
Sbjct: 232 YTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCA 291
Query: 449 GIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVPIVRGGE 508
GIDV LC+VG AIQEVMESYEVEIDGKTYQVK IRNLNGHSI YRIHAGKTVPI++GGE
Sbjct: 292 GIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIIKGGE 351
Query: 509 GTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFEASYIPLRLASSKSLLNTINKNFG 568
T MEE E YAIETFGSTGKG+VHDDM+ SHYMKNF+ ++P+RL +K LLN IN+NFG
Sbjct: 352 ATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFG 411
Query: 569 TLAFCKRWLDRAGCTKYQMALKDLCDKGIVEAYPPLCDIKGSYTAQFEHTIVLRPTCKEV 628
TLAFC+RWLDR G +KY MALK+LCD GIV+ YPPLCDIKGSYTAQFEHTI+LRPTCKEV
Sbjct: 412 TLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPPLCDIKGSYTAQFEHTILLRPTCKEV 471
Query: 629 ISRGDDY 635
+SRGDDY
Sbjct: 472 VSRGDDY 478
Score = 196 bits (499), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 92/133 (69%), Positives = 109/133 (81%)
Query: 106 NGNFPVGQEMEYPTLKDGRTGKDRFTNEEKKAIDRLHNDMYNEARQAAEAHRQVRKHMMG 165
NG FP GQE EYP +DGRT R T+EEKKA+D+ +++N+ R+AAEAHRQVRK++M
Sbjct: 126 NGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMS 185
Query: 166 WIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCAAHYTPNNGDKTVLEFD 225
WIKPGMTMIEI E+LE SR LI E+GL AGLAFPTGCS N+CAAHYTPN GD TVL++D
Sbjct: 186 WIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYD 245
Query: 226 DITKIDFGTHING 238
DI KIDFGTHI+G
Sbjct: 246 DICKIDFGTHISG 258
>pdb|1B59|A Chain A, Complex Of Human Methionine Aminopeptidase-2 Complexed
With Ovalicin
Length = 370
Score = 583 bits (1504), Expect = e-167, Method: Compositional matrix adjust.
Identities = 274/367 (74%), Positives = 315/367 (85%)
Query: 269 QTTPPSIPVSQLYPDGNFPVGQEMEYPTLKDGRTGKDRFTNEEKKAIDRLHNDMYNEARQ 328
QT PPS+P+ LYP+G FP GQE EYP +DGRT R T+EEKKA+D+ +++N+ R+
Sbjct: 4 QTDPPSVPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFRE 63
Query: 329 AAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCAAH 388
AAEAHRQVRK++M WIKPGMTMIEI E+LE SR LI E+GL AGLAFPTGCS N+CAAH
Sbjct: 64 AAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAH 123
Query: 389 YTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAVRDATNTGIKAA 448
YTPN GD TVL++DDI KIDFGTHI+GRIIDCAFT+ +N KYD L++AV+DATNTGIK A
Sbjct: 124 YTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCA 183
Query: 449 GIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVPIVRGGE 508
GIDV LC+VG AIQEVMESYEVEIDGKTYQVK IRNLNGHSI YRIHAGKTVPIV+GGE
Sbjct: 184 GIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIVKGGE 243
Query: 509 GTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFEASYIPLRLASSKSLLNTINKNFG 568
T MEE E YAIETFGSTGKG+VHDDM+ SHYMKNF+ ++P+RL +K LLN IN+NFG
Sbjct: 244 ATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFG 303
Query: 569 TLAFCKRWLDRAGCTKYQMALKDLCDKGIVEAYPPLCDIKGSYTAQFEHTIVLRPTCKEV 628
TLAFC+RWLDR G +KY MALK+LCD GIV+ YPPLCDIKGSYTAQFEHTI+LRPTCKEV
Sbjct: 304 TLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPPLCDIKGSYTAQFEHTILLRPTCKEV 363
Query: 629 ISRGDDY 635
+SRGDDY
Sbjct: 364 VSRGDDY 370
Score = 196 bits (497), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 92/133 (69%), Positives = 109/133 (81%)
Query: 106 NGNFPVGQEMEYPTLKDGRTGKDRFTNEEKKAIDRLHNDMYNEARQAAEAHRQVRKHMMG 165
NG FP GQE EYP +DGRT R T+EEKKA+D+ +++N+ R+AAEAHRQVRK++M
Sbjct: 18 NGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMS 77
Query: 166 WIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCAAHYTPNNGDKTVLEFD 225
WIKPGMTMIEI E+LE SR LI E+GL AGLAFPTGCS N+CAAHYTPN GD TVL++D
Sbjct: 78 WIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYD 137
Query: 226 DITKIDFGTHING 238
DI KIDFGTHI+G
Sbjct: 138 DICKIDFGTHISG 150
>pdb|1R58|A Chain A, Crystal Structure Of Metap2 Complexed With A357300
pdb|1R5G|A Chain A, Crystal Structure Of Metap2 Complexed With A311263
pdb|1R5H|A Chain A, Crystal Structure Of Metap2 Complexed With A320282
pdb|2ADU|A Chain A, Human Methionine Aminopeptidase Complex With 4-Aryl-1,2,3-
Triazole Inhibitor
pdb|1YW7|A Chain A, H-Metap2 Complexed With A444148
pdb|1YW8|A Chain A, H-Metap2 Complexed With A751277
pdb|1YW9|A Chain A, H-Metap2 Complexed With A849519
pdb|2GA2|A Chain A, H-Metap2 Complexed With A193400
pdb|2OAZ|A Chain A, Human Methionine Aminopeptidase-2 Complexed With Sb-587094
pdb|2EA2|A Chain A, H-Metap2 Complexed With A773812
pdb|2EA4|A Chain A, H-Metap2 Complexed With A797859
Length = 369
Score = 583 bits (1502), Expect = e-166, Method: Compositional matrix adjust.
Identities = 273/367 (74%), Positives = 315/367 (85%)
Query: 269 QTTPPSIPVSQLYPDGNFPVGQEMEYPTLKDGRTGKDRFTNEEKKAIDRLHNDMYNEARQ 328
QT PPS+P+ LYP+G FP GQE EYP +DGRT R T+EEKKA+D+ +++N+ R+
Sbjct: 3 QTDPPSVPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFRE 62
Query: 329 AAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCAAH 388
AAEAHRQVRK++M WIKPGMTMIEI E+LE SR LI E+GL AGLAFPTGCS N+CAAH
Sbjct: 63 AAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAH 122
Query: 389 YTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAVRDATNTGIKAA 448
YTPN GD TVL++DDI KIDFGTHI+GRIIDCAFT+ +N KYD L++AV+DATNTGIK A
Sbjct: 123 YTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCA 182
Query: 449 GIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVPIVRGGE 508
GIDV LC+VG AIQEVMESYEVEIDGKTYQVK IRNLNGHSI YRIHAGKTVPI++GGE
Sbjct: 183 GIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIIKGGE 242
Query: 509 GTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFEASYIPLRLASSKSLLNTINKNFG 568
T MEE E YAIETFGSTGKG+VHDDM+ SHYMKNF+ ++P+RL +K LLN IN+NFG
Sbjct: 243 ATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFG 302
Query: 569 TLAFCKRWLDRAGCTKYQMALKDLCDKGIVEAYPPLCDIKGSYTAQFEHTIVLRPTCKEV 628
TLAFC+RWLDR G +KY MALK+LCD GIV+ YPPLCDIKGSYTAQFEHTI+LRPTCKEV
Sbjct: 303 TLAFCRRWLDRLGESKYLMALKNLCDLGIVDPYPPLCDIKGSYTAQFEHTILLRPTCKEV 362
Query: 629 ISRGDDY 635
+SRGDDY
Sbjct: 363 VSRGDDY 369
Score = 196 bits (497), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 92/133 (69%), Positives = 109/133 (81%)
Query: 106 NGNFPVGQEMEYPTLKDGRTGKDRFTNEEKKAIDRLHNDMYNEARQAAEAHRQVRKHMMG 165
NG FP GQE EYP +DGRT R T+EEKKA+D+ +++N+ R+AAEAHRQVRK++M
Sbjct: 17 NGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMS 76
Query: 166 WIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCAAHYTPNNGDKTVLEFD 225
WIKPGMTMIEI E+LE SR LI E+GL AGLAFPTGCS N+CAAHYTPN GD TVL++D
Sbjct: 77 WIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYD 136
Query: 226 DITKIDFGTHING 238
DI KIDFGTHI+G
Sbjct: 137 DICKIDFGTHISG 149
>pdb|3FM3|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FM3|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FMQ|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMQ|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMR|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
pdb|3FMR|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
Length = 358
Score = 245 bits (626), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 148/346 (42%), Positives = 211/346 (60%), Gaps = 14/346 (4%)
Query: 298 KDGRTGKDRFTNEEKKAIDRL-HNDMYNEARQAAEAHRQVRKHMMGWIKPGMTMIEIVEE 356
KDG GK + + I+ +D+ +AR+AAEAHR+ R + ++PG+T++EIV
Sbjct: 19 KDGVYGKGKLFDSRNMEIENFTESDILQDARRAAEAHRRARYRVQSIVRPGITLLEIVRS 78
Query: 357 LEKYSR-LLIGEDGLKAGLAFPTGCSRNHCAAHYTPNNGDK-TVLEFDDITKIDFGTHIN 414
+E +R LL GE G+ FP G S N CAAHYT N G++ VL+ DD+ KIDFGTH +
Sbjct: 79 IEDSTRTLLKGER--NNGIGFPAGMSMNSCAAHYTVNPGEQDIVLKEDDVLKIDFGTHSD 136
Query: 415 GRIIDCAFTLAYNNKYDKLIEAVRDATNTGIKAAGIDVPLCEVGAAIQEVMESYEVEIDG 474
GRI+D AFT+A+ + L+ A R+ T TGIK+ G+DV +C++G I EV+ SYEVEI G
Sbjct: 137 GRIMDSAFTVAFKENLEPLLVAAREGTETGIKSLGVDVRVCDIGRDINEVISSYEVEIGG 196
Query: 475 KTYQVKSIRNLNGHSIDSYRIHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDD 534
+ + ++ I +L+GHSI +RIH G ++P V + T ++ + FYA+ETF +TGKG + D
Sbjct: 197 RMWPIRPISDLHGHSISQFRIHGGISIPAVNNRDTTRIKGDSFYAVETFATTGKGSIDDR 256
Query: 535 MDVSHYMKNFEASYIPLRLASSKSLLNT---INKNFGTLAFCKRWLDRAGCTK--YQMAL 589
SH++ N S R +K L+ + + GTL F R LD G K ++
Sbjct: 257 PPCSHFVLNTYKS----RKLFNKDLIKVYEFVKDSLGTLPFSPRHLDYYGLVKGGSLKSV 312
Query: 590 KDLCDKGIVEAYPPLCDIKGSYTAQFEHTIVLRPTCKEVISRGDDY 635
L G++ YPPL DI G AQFEHT+ L KEV++RGDDY
Sbjct: 313 NLLTMMGLLTPYPPLNDIDGCKVAQFEHTVYLSEHGKEVLTRGDDY 358
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 76/121 (62%), Gaps = 5/121 (4%)
Query: 121 KDGRTGKDRFTNEEKKAIDRL-HNDMYNEARQAAEAHRQVRKHMMGWIKPGMTMIEIVEE 179
KDG GK + + I+ +D+ +AR+AAEAHR+ R + ++PG+T++EIV
Sbjct: 19 KDGVYGKGKLFDSRNMEIENFTESDILQDARRAAEAHRRARYRVQSIVRPGITLLEIVRS 78
Query: 180 LEKYSR-LLIGEDGLKAGLAFPTGCSRNHCAAHYTPNNGDK-TVLEFDDITKIDFGTHIN 237
+E +R LL GE G+ FP G S N CAAHYT N G++ VL+ DD+ KIDFGTH +
Sbjct: 79 IEDSTRTLLKGER--NNGIGFPAGMSMNSCAAHYTVNPGEQDIVLKEDDVLKIDFGTHSD 136
Query: 238 G 238
G
Sbjct: 137 G 137
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 166/296 (56%), Gaps = 20/296 (6%)
Query: 328 QAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCAA 387
+A E ++VR+ + +PGM ++E+ E +EK +I E G K AFP S N AA
Sbjct: 8 KAGEIAKKVREKAIKLARPGMLLLELAESIEK----MIMELGGKP--AFPVNLSINEIAA 61
Query: 388 HYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAVRDATNTGIKA 447
HYTP GD TVL+ D KID G HI+G I D A T+ + D+L+EA ++A N I
Sbjct: 62 HYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDELMEAAKEALNAAISV 121
Query: 448 AGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVP-IVRG 506
A V + E+G AI+ EI + + K I NL+GH I+ Y++HAG ++P I R
Sbjct: 122 ARAGVEIKELGKAIEN-------EIRKRGF--KPIVNLSGHKIERYKLHAGISIPNIYRP 172
Query: 507 GEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFEASYIPLRLASSKSLLNTINKN 566
+ +++E + +AIE F + G G V ++V + +P+R+A ++ LL I +
Sbjct: 173 HDNYVLKEGDVFAIEPFATIGAGQV---IEVPPTLIYMYVRDVPVRVAQARFLLAKIKRE 229
Query: 567 FGTLAFCKRWL-DRAGCTKYQMALKDLCDKGIVEAYPPLCDIKGSYTAQFEHTIVL 621
+GTL F RWL + + ++ALK L G + YP L +I+ AQFEHTI++
Sbjct: 230 YGTLPFAYRWLQNDMPEGQLKLALKTLEKAGAIYGYPVLKEIRNGIVAQFEHTIIV 285
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Query: 151 QAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCAA 210
+A E ++VR+ + +PGM ++E+ E +EK +I E G K AFP S N AA
Sbjct: 8 KAGEIAKKVREKAIKLARPGMLLLELAESIEK----MIMELGGKP--AFPVNLSINEIAA 61
Query: 211 HYTPNNGDKTVLEFDDITKIDFGTHING 238
HYTP GD TVL+ D KID G HI+G
Sbjct: 62 HYTPYKGDTTVLKEGDYLKIDVGVHIDG 89
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 166/296 (56%), Gaps = 20/296 (6%)
Query: 328 QAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCAA 387
+A E ++VR+ + +PGM ++E+ E +EK +I E G K AFP S N AA
Sbjct: 8 KAGEIAKKVREKAIKLARPGMLLLELAESIEK----MIMELGGKP--AFPVNLSINEIAA 61
Query: 388 HYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAVRDATNTGIKA 447
HYTP GD TVL+ D KID G HI+G I D A T+ + D+L+EA ++A N I
Sbjct: 62 HYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDELMEAAKEALNAAISV 121
Query: 448 AGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVP-IVRG 506
A V + E+G AI+ EI + + K I NL+GH I+ Y++HAG ++P I R
Sbjct: 122 ARAGVEIKELGKAIEN-------EIRKRGF--KPIVNLSGHKIERYKLHAGISIPNIYRP 172
Query: 507 GEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFEASYIPLRLASSKSLLNTINKN 566
+ +++E + +AIE F + G G V ++V + +P+R+A ++ LL I +
Sbjct: 173 HDNYVLKEGDVFAIEPFATIGAGQV---IEVPPTLIYMYVRDVPVRVAQARFLLAKIKRE 229
Query: 567 FGTLAFCKRWL-DRAGCTKYQMALKDLCDKGIVEAYPPLCDIKGSYTAQFEHTIVL 621
+GTL F RWL + + ++ALK L G + YP L +I+ AQFEHTI++
Sbjct: 230 YGTLPFAYRWLQNDMPEGQLKLALKTLEKAGAIYGYPVLKEIRNGIVAQFEHTIIV 285
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Query: 151 QAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCAA 210
+A E ++VR+ + +PGM ++E+ E +EK +I E G K AFP S N AA
Sbjct: 8 KAGEIAKKVREKAIKLARPGMLLLELAESIEK----MIMELGGKP--AFPVNLSINEIAA 61
Query: 211 HYTPNNGDKTVLEFDDITKIDFGTHING 238
HYTP GD TVL+ D KID G HI+G
Sbjct: 62 HYTPYKGDTTVLKEGDYLKIDVGVHIDG 89
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 129/292 (44%), Gaps = 28/292 (9%)
Query: 357 LEKYSRLLIGEDGLKAGLAFPTGCSRNHCAAHYTPNNGDKT-VLEFDDITKIDFGTHING 415
+E+ ++ E +K G+AFPT S N+C H++P D+ +L+ D+ KID G H++G
Sbjct: 64 MEETGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDG 123
Query: 416 RIIDCAFTLAYNNKYDKLIEAVRDATNTGIKAAGIDVPLCEVGAAIQ---------EVME 466
I + A T +++ + TG KA I AA++ +V E
Sbjct: 124 FIANVAHTF--------VVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTE 175
Query: 467 SYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTV------PIVRGGEGTLMEENEFYAI 520
++ ++ I + H + + I KT+ + E E +E YA+
Sbjct: 176 AWNKV--AHSFNCTPIEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAV 233
Query: 521 ETFGSTGKGMVHDDMDVSHYMKNFEASYIPLRLASSKSLLNTINKNFGTLAFCKRWLDRA 580
+ S+G+G D + K + L++ +S++ + + + F + F R +
Sbjct: 234 DVLVSSGEGKAKDAGQRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDE 293
Query: 581 GCTKYQMALKDLCDKGIVEAYPPLCDIKGSYTAQFEHTIVLRPTCKEVISRG 632
K +M + + +++ + L + +G + AQF+ T++L P I+ G
Sbjct: 294 --KKARMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSG 343
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 180 LEKYSRLLIGEDGLKAGLAFPTGCSRNHCAAHYTPNNGDKT-VLEFDDITKIDFGTHING 238
+E+ ++ E +K G+AFPT S N+C H++P D+ +L+ D+ KID G H++G
Sbjct: 64 MEETGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDG 123
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 129/292 (44%), Gaps = 28/292 (9%)
Query: 357 LEKYSRLLIGEDGLKAGLAFPTGCSRNHCAAHYTPNNGDKT-VLEFDDITKIDFGTHING 415
+E+ ++ E +K G+AFPT S N+C H++P D+ +L+ D+ KID G H++G
Sbjct: 57 MEETGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDG 116
Query: 416 RIIDCAFTLAYNNKYDKLIEAVRDATNTGIKAAGIDVPLCEVGAAIQ---------EVME 466
I + A T +++ + TG KA I AA++ +V E
Sbjct: 117 FIANVAHTF--------VVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTE 168
Query: 467 SYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTV------PIVRGGEGTLMEENEFYAI 520
++ ++ I + H + + I KT+ + E E +E YA+
Sbjct: 169 AWNKV--AHSFNCTPIEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAV 226
Query: 521 ETFGSTGKGMVHDDMDVSHYMKNFEASYIPLRLASSKSLLNTINKNFGTLAFCKRWLDRA 580
+ S+G+G D + K + L++ +S++ + + + F + F R +
Sbjct: 227 DVLVSSGEGKAKDAGQRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDE 286
Query: 581 GCTKYQMALKDLCDKGIVEAYPPLCDIKGSYTAQFEHTIVLRPTCKEVISRG 632
K +M + + +++ + L + +G + AQF+ T++L P I+ G
Sbjct: 287 --KKARMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSG 336
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 180 LEKYSRLLIGEDGLKAGLAFPTGCSRNHCAAHYTPNNGDKT-VLEFDDITKIDFGTHING 238
+E+ ++ E +K G+AFPT S N+C H++P D+ +L+ D+ KID G H++G
Sbjct: 57 MEETGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDG 116
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 128/292 (43%), Gaps = 28/292 (9%)
Query: 357 LEKYSRLLIGEDGLKAGLAFPTGCSRNHCAAHYTPNNGDKT-VLEFDDITKIDFGTHING 415
+E+ ++ E +K G+AFPT S N+C H++P D+ +L+ D+ KID G H++G
Sbjct: 50 MEETGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDG 109
Query: 416 RIIDCAFTLAYNNKYDKLIEAVRDATNTGIKAAGIDVPLCEVGAAIQ---------EVME 466
I + A T +I + TG KA I AA++ +V E
Sbjct: 110 FIANVAHTF--------VIGVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTE 161
Query: 467 SYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTV------PIVRGGEGTLMEENEFYAI 520
++ ++ I + H + + I KT+ + E E +E YA+
Sbjct: 162 AWNKV--AHSFNCTPIEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAV 219
Query: 521 ETFGSTGKGMVHDDMDVSHYMKNFEASYIPLRLASSKSLLNTINKNFGTLAFCKRWLDRA 580
+ S+G+G D + K + L++ +S++ + + + F + F R +
Sbjct: 220 DVLVSSGEGKAKDAGQRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFALRAFEDE 279
Query: 581 GCTKYQMALKDLCDKGIVEAYPPLCDIKGSYTAQFEHTIVLRPTCKEVISRG 632
K +M + + +++ + L + +G + AQF+ T++L P I+ G
Sbjct: 280 --KKARMGVVECAKHELLQPFNVLYEREGEFVAQFKFTVLLMPNGPMRITSG 329
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 180 LEKYSRLLIGEDGLKAGLAFPTGCSRNHCAAHYTPNNGDKT-VLEFDDITKIDFGTHING 238
+E+ ++ E +K G+AFPT S N+C H++P D+ +L+ D+ KID G H++G
Sbjct: 50 MEETGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDG 109
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
Length = 264
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 27/210 (12%)
Query: 328 QAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKA------GLAFPTGCS 381
++ E V +H+ +IKPG+T +I E + R I G A G + T CS
Sbjct: 15 ESGELLADVHRHLRTFIKPGITSWDI----EVFVRDFIESHGGVAAQIGYEGYKYATCCS 70
Query: 382 RNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNN---KYDKLIEAVR 438
N H P K VL+ D+ K+D + G I D ++ + D+L+E +
Sbjct: 71 INDEICHGFPR---KKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLMEVTK 127
Query: 439 DATNTGIKAAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAG 498
A GI+ A + + ++G AIQ +E G+ Y V +R+ GH I IH
Sbjct: 128 KALYLGIEQAQVGNRIGDIGHAIQTYVE-------GEGYGV--VRDFVGHGIGP-TIHES 177
Query: 499 KTVP-IVRGGEGTLMEENEFYAIETFGSTG 527
+P G+G ++E IE +TG
Sbjct: 178 PMIPHYGEAGKGLRLKEGMVITIEPMVNTG 207
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 151 QAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKA------GLAFPTGCS 204
++ E V +H+ +IKPG+T +I E + R I G A G + T CS
Sbjct: 15 ESGELLADVHRHLRTFIKPGITSWDI----EVFVRDFIESHGGVAAQIGYEGYKYATCCS 70
Query: 205 RNHCAAHYTPNNGDKTVLEFDDITKIDFGTHING 238
N H P K VL+ D+ K+D + G
Sbjct: 71 INDEICHGFPR---KKVLKDGDLIKVDMCVDLKG 101
>pdb|4IPA|A Chain A, Structure Of A Thermophilic Arx1
pdb|4IPA|B Chain B, Structure Of A Thermophilic Arx1
pdb|4IPA|C Chain C, Structure Of A Thermophilic Arx1
pdb|4IPA|D Chain D, Structure Of A Thermophilic Arx1
Length = 423
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 112/301 (37%), Gaps = 35/301 (11%)
Query: 311 EKKAIDR--LHNDMYNEARQAAEAHRQVRKHMMGWIKPGMTMIEIVEE----LEKYSRLL 364
EKK D + D+ + + AA+ +V + PG +I+I E+ +E+ +
Sbjct: 12 EKKEADNVAISVDVLTKYKTAAQISEKVLAEVSKLCVPGAKIIDICEQGDKLMEEELSKV 71
Query: 365 IGEDGLKAGLAFPTGCSRNHCAAHYTPNNGDK----TVLEFDDITKIDFGTHINGR-IID 419
+ G + PT S YTP D+ T ++ + KI G I+G I
Sbjct: 72 YRDKKTNKGFSHPTTVSPAAFITPYTPLRSDEKEAATEIQPGEPIKIQLGAQIDGYGTIV 131
Query: 420 CAFTLAYNNKYDKLIEA----------------VRDATNTGIKAAGIDVPLCEVGAAI-- 461
C +A N +IE +R G+ A G D + A
Sbjct: 132 CDTIVAKNANDPDVIEGRQADLFLATYYANEVLLRLMVPPGLLATGTDEEKAKAAAVKPP 191
Query: 462 QEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVPIVRG----GEGTLMEENEF 517
+ S +E K Y I + D I K + + G GEG + E +
Sbjct: 192 SQAKISSLLEKVAKAYDCNIIESTTSWLFDKNEIEGKKKIILSPGENIKGEG-VPEVGDV 250
Query: 518 YAIETFGSTGKGMVHDDMDVSHYMKNFEASYIPLRLASSKSLLNTINKNFGTLAFCKRWL 577
+ +E S G G V + + +Y L+ +S+ + + + K FGT F R L
Sbjct: 251 WGVEVGCSLGSGKVKQFEQRATLHRRTNNTY-ALKRPTSRKIYSEVQKKFGTFPFSLRQL 309
Query: 578 D 578
+
Sbjct: 310 E 310
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 27/123 (21%)
Query: 322 MYNEARQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRL---------LIGEDGLKA 372
+ EA Q A+A + H++ +I+PG++ IE+ ELE + R +I GL++
Sbjct: 138 ILKEAAQIADAAFE---HILSFIRPGVSEIEVSNELEFFMRKQGATSSSFDIIVASGLRS 194
Query: 373 GLAFPTGCSRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDK 432
A P G + + V+E D +DFG + G D T+A DK
Sbjct: 195 --ALPHGVA-------------SEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDK 239
Query: 433 LIE 435
L E
Sbjct: 240 LKE 242
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 27/103 (26%)
Query: 145 MYNEARQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRL---------LIGEDGLKA 195
+ EA Q A+A + H++ +I+PG++ IE+ ELE + R +I GL++
Sbjct: 138 ILKEAAQIADAAFE---HILSFIRPGVSEIEVSNELEFFMRKQGATSSSFDIIVASGLRS 194
Query: 196 GLAFPTGCSRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHING 238
A P G + + V+E D +DFG + G
Sbjct: 195 --ALPHGVA-------------SEKVIETGDFVTLDFGAYYKG 222
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 15/150 (10%)
Query: 381 SRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNN---KYDKLIEAV 437
S NH H PN DK L+ DI ID ++G D + + K +LI+
Sbjct: 74 SINHVVCHGIPN--DKP-LKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRLIQVT 130
Query: 438 RDATNTGIKAAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHA 497
DA GI+ L ++G AIQ E + + +R+ GH I
Sbjct: 131 YDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSV---------VRDYTGHGIGRVFHDK 181
Query: 498 GKTVPIVRGGEGTLMEENEFYAIETFGSTG 527
+ R G G ++E F+ +E + G
Sbjct: 182 PSILNYGRNGTGLTLKEGMFFTVEPMINAG 211
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 15/150 (10%)
Query: 381 SRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNN---KYDKLIEAV 437
S NH H PN DK L+ DI ID ++G D + + K +LI+
Sbjct: 74 SINHVVCHGIPN--DKP-LKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRLIQVT 130
Query: 438 RDATNTGIKAAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHA 497
DA GI+ L ++G AIQ E + + +R+ GH I
Sbjct: 131 YDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSV---------VRDYTGHGIGRVFHDK 181
Query: 498 GKTVPIVRGGEGTLMEENEFYAIETFGSTG 527
+ R G G ++E F+ +E + G
Sbjct: 182 PSILNYGRNGTGLTLKEGMFFTVEPMINAG 211
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 88/247 (35%), Gaps = 29/247 (11%)
Query: 287 PVGQEMEYPTLKDGRTGKDRFTNEEK--KAIDRLHNDMYNEARQAAEAHRQVRKHMMGWI 344
PV ++ P D G K I L ++ R R+V G I
Sbjct: 18 PVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMI 77
Query: 345 KPGMTMIEIVEELEKYSRL-LIGEDGLKAGL---AFPTGC--SRNHCAAHYTPNNGDKTV 398
KPG+T EE++ L I + + L FP C S N H P D+
Sbjct: 78 KPGVT----TEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIP---DRRP 130
Query: 399 LEFDDITKIDFGTHINGR---IIDCAFTLAYNNKYDKLIEAVRDATNTGIKAAGIDVPLC 455
L+ DI +D + NG + + F ++ KL++ + I A V
Sbjct: 131 LQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYR 190
Query: 456 EVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVPIVRGGEGT-LMEE 514
E+G IQ+ ++ + +R+ GH I H VP + +M+
Sbjct: 191 ELGNIIQKHAQANGFSV---------VRSYCGHGIHKL-FHTAPNVPHYAKNKAVGVMKS 240
Query: 515 NEFYAIE 521
+ IE
Sbjct: 241 GHVFTIE 247
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 88/247 (35%), Gaps = 29/247 (11%)
Query: 287 PVGQEMEYPTLKDGRTGKDRFTNEEK--KAIDRLHNDMYNEARQAAEAHRQVRKHMMGWI 344
PV ++ P D G K I L ++ R R+V G I
Sbjct: 43 PVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMI 102
Query: 345 KPGMTMIEIVEELEKYSRL-LIGEDGLKAGL---AFPTGC--SRNHCAAHYTPNNGDKTV 398
KPG+T EE++ L I + + L FP C S N H P D+
Sbjct: 103 KPGVT----TEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIP---DRRP 155
Query: 399 LEFDDITKIDFGTHINGR---IIDCAFTLAYNNKYDKLIEAVRDATNTGIKAAGIDVPLC 455
L+ DI +D + NG + + F ++ KL++ + I A V
Sbjct: 156 LQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYR 215
Query: 456 EVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVPIVRGGEGT-LMEE 514
E+G IQ+ ++ + +R+ GH I H VP + +M+
Sbjct: 216 ELGNIIQKHAQANGFSV---------VRSYCGHGIHKL-FHTAPNVPHYAKNKAVGVMKS 265
Query: 515 NEFYAIE 521
+ IE
Sbjct: 266 GHVFTIE 272
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 88/247 (35%), Gaps = 29/247 (11%)
Query: 287 PVGQEMEYPTLKDGRTGKDRFTNEEK--KAIDRLHNDMYNEARQAAEAHRQVRKHMMGWI 344
PV ++ P D G K I L ++ R R+V G I
Sbjct: 19 PVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMI 78
Query: 345 KPGMTMIEIVEELEKYSRL-LIGEDGLKAGL---AFPTGC--SRNHCAAHYTPNNGDKTV 398
KPG+T EE++ L I + + L FP C S N H P D+
Sbjct: 79 KPGVT----TEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIP---DRRP 131
Query: 399 LEFDDITKIDFGTHINGR---IIDCAFTLAYNNKYDKLIEAVRDATNTGIKAAGIDVPLC 455
L+ DI +D + NG + + F ++ KL++ + I A V
Sbjct: 132 LQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYR 191
Query: 456 EVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVPIVRGGEGT-LMEE 514
E+G IQ+ ++ + +R+ GH I H VP + +M+
Sbjct: 192 ELGNIIQKHAQANGFSV---------VRSYCGHGIHKL-FHTAPNVPHYAKNKAVGVMKS 241
Query: 515 NEFYAIE 521
+ IE
Sbjct: 242 GHVFTIE 248
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 378 TGCSRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAV 437
G N C HYT N + + D+ ID G G D T N K+ +A
Sbjct: 233 VGSGENGCILHYTENEXE---MRDGDLVLIDAGCEYKGYAGDITRTFPVNGKF---TQAQ 286
Query: 438 RDATNTGIKAAGIDVPLCEVGAAIQEV 464
R+ + +++ + L G +I EV
Sbjct: 287 REIYDIVLESLETSLRLYRPGTSILEV 313
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 378 TGCSRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAV 437
G N C HYT N + + D+ ID G G D T N K+ +A
Sbjct: 233 VGSGENGCILHYTENEXE---MRDGDLVLIDAGCEYKGYAGDITRTFPVNGKF---TQAQ 286
Query: 438 RDATNTGIKAAGIDVPLCEVGAAIQEV 464
R+ + +++ + L G +I EV
Sbjct: 287 REIYDIVLESLETSLRLYRPGTSILEV 313
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 378 TGCSRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAV 437
G N C HYT N + + D+ ID G G D T N K+ +A
Sbjct: 233 VGSGENGCILHYTENEXE---MRDGDLVLIDAGCEYKGYAGDITRTFPVNGKF---TQAQ 286
Query: 438 RDATNTGIKAAGIDVPLCEVGAAIQEV 464
R+ + +++ + L G +I EV
Sbjct: 287 REIYDIVLESLETSLRLYRPGTSILEV 313
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 378 TGCSRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAV 437
G N C HYT N + + D+ ID G G D T N K+ +A
Sbjct: 233 VGSGENGCILHYTENECE---MRDGDLVLIDAGCEYKGYAGDITRTFPVNGKF---TQAQ 286
Query: 438 RDATNTGIKAAGIDVPLCEVGAAIQEV 464
R+ + +++ + L G +I EV
Sbjct: 287 REIYDIVLESLETSLRLYRPGTSILEV 313
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 378 TGCSRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAV 437
G N C HYT N + + D+ ID G G D T N K+ +A
Sbjct: 233 VGSGENGCILHYTENECE---MRDGDLVLIDAGCEYKGYAGDITRTFPVNGKF---TQAQ 286
Query: 438 RDATNTGIKAAGIDVPLCEVGAAIQEV 464
R+ + +++ + L G +I EV
Sbjct: 287 REIYDIVLESLETSLRLYRPGTSILEV 313
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 378 TGCSRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAV 437
G N C HYT N + + D+ ID G G D T N K+ +A
Sbjct: 233 VGSGENGCILHYTENECE---MRDGDLVLIDAGCEYKGYAGDITRTFPVNGKF---TQAQ 286
Query: 438 RDATNTGIKAAGIDVPLCEVGAAIQEV 464
R+ + +++ + L G +I EV
Sbjct: 287 REIYDIVLESLETSLRLYRPGTSILEV 313
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 378 TGCSRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAV 437
G N C HYT N + + D+ ID G G D T N K+ +A
Sbjct: 233 VGSGENGCILHYTENECE---MRDGDLVLIDAGCEYKGYAGDITRTFPVNGKF---TQAQ 286
Query: 438 RDATNTGIKAAGIDVPLCEVGAAIQEV 464
R+ + +++ + L G +I EV
Sbjct: 287 REIYDIVLESLETSLRLYRPGTSILEV 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,487,861
Number of Sequences: 62578
Number of extensions: 776585
Number of successful extensions: 2033
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1974
Number of HSP's gapped (non-prelim): 64
length of query: 635
length of database: 14,973,337
effective HSP length: 105
effective length of query: 530
effective length of database: 8,402,647
effective search space: 4453402910
effective search space used: 4453402910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)