RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15498
(635 letters)
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 519 bits (1338), Expect = e-180
Identities = 286/420 (68%), Positives = 335/420 (79%), Gaps = 11/420 (2%)
Query: 216 NGDKTVLEFDDITKIDFGTHINGEEVAKKKKKKKNKNKAAAATEEAPKNGIPQQTTPPSI 275
+++ LE + + D +G+ KKKKKK K + G QT PPS+
Sbjct: 70 QLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKR-----------GPKVQTDPPSV 118
Query: 276 PVSQLYPDGNFPVGQEMEYPTLKDGRTGKDRFTNEEKKAIDRLHNDMYNEARQAAEAHRQ 335
P+ LYP+G FP GQE EYP +DGRT R T+EEKKA+D+ +++N+ R+AAEAHRQ
Sbjct: 119 PICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFREAAEAHRQ 178
Query: 336 VRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCAAHYTPNNGD 395
VRK++M WIKPGMTMIEI E+LE SR LI E+GL AGLAFPTGCS N+CAAHYTPN GD
Sbjct: 179 VRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGD 238
Query: 396 KTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAVRDATNTGIKAAGIDVPLC 455
TVL++DDI KIDFGTHI+GRIIDCAFT+ +N KYD L++AV+DATNTGIK AGIDV LC
Sbjct: 239 TTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCAGIDVRLC 298
Query: 456 EVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVPIVRGGEGTLMEEN 515
+VG AIQEVMESYEVEIDGKTYQVK IRNLNGHSI YRIHAGKTVPIV+GGE T MEE
Sbjct: 299 DVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIVKGGEATRMEEG 358
Query: 516 EFYAIETFGSTGKGMVHDDMDVSHYMKNFEASYIPLRLASSKSLLNTINKNFGTLAFCKR 575
E YAIETFGSTGKG+VHDDM+ SHYMKNF+ ++P+RL +K LLN IN+NFGTLAFC+R
Sbjct: 359 EVYAIETFGSTGKGVVHDDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFGTLAFCRR 418
Query: 576 WLDRAGCTKYQMALKDLCDKGIVEAYPPLCDIKGSYTAQFEHTIVLRPTCKEVISRGDDY 635
WLDR G +KY MALK+LCD GIV+ YPPLCDIKGSYTAQFEHTI+LRPTCKEV+SRGDDY
Sbjct: 419 WLDRLGESKYLMALKNLCDLGIVDPYPPLCDIKGSYTAQFEHTILLRPTCKEVVSRGDDY 478
Score = 212 bits (540), Expect = 7e-62
Identities = 119/235 (50%), Positives = 148/235 (62%), Gaps = 5/235 (2%)
Query: 4 QKGEEVAKKKKKKKNKNKAAAATEEAPKNGVPQQTTPPSIPVSQLYPDDDEIEDGDVEDG 63
EE AKKK++KK K+K +A E + + + +D+ D D EDG
Sbjct: 29 STAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDG 88
Query: 64 AAEASKKKKRKKKKKKAGAGEAAADVPIDGNGIAEQLEQCGLNGNFPVGQEMEYPTLKDG 123
+ +KKKKKK G P I + NG FP GQE EYP +DG
Sbjct: 89 DGDGDGATGKKKKKKKKKRGPKVQTDPPS-VPICDLYP----NGVFPKGQECEYPPTQDG 143
Query: 124 RTGKDRFTNEEKKAIDRLHNDMYNEARQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKY 183
RT R T+EEKKA+D+ +++N+ R+AAEAHRQVRK++M WIKPGMTMIEI E+LE
Sbjct: 144 RTAAWRTTSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDC 203
Query: 184 SRLLIGEDGLKAGLAFPTGCSRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHING 238
SR LI E+GL AGLAFPTGCS N+CAAHYTPN GD TVL++DDI KIDFGTHI+G
Sbjct: 204 SRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISG 258
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 462 bits (1191), Expect = e-160
Identities = 142/371 (38%), Positives = 210/371 (56%), Gaps = 20/371 (5%)
Query: 268 QQTTPPSIPVSQLYPDGNFPVGQEMEYPTLKDGRTGKDRFTNEEKKAIDRLHNDMYNEAR 327
+P+ L DG + G+ + + + +D+ +AR
Sbjct: 7 LLNQAEELPIEFLPKDGVYGKGKLFDS---------------RNMEIENFTESDILQDAR 51
Query: 328 QAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCAA 387
+AAEAHR+ R + ++PG+T++EIV +E +R L+ + G+ FP G S N CAA
Sbjct: 52 RAAEAHRRARYRVQSIVRPGITLLEIVRSIEDSTRTLLKGE-RNNGIGFPAGMSMNSCAA 110
Query: 388 HYTPNNGDK-TVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAVRDATNTGIK 446
HYT N G++ VL+ DD+ KIDFGTH +GRI+D AFT+A+ + L+ A R+ T TGIK
Sbjct: 111 HYTVNPGEQDIVLKEDDVLKIDFGTHSDGRIMDSAFTVAFKENLEPLLVAAREGTETGIK 170
Query: 447 AAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVPIVRG 506
+ G+DV +C++G I EV+ SYEVEI G+ + ++ I +L+GHSI +RIH G ++P V
Sbjct: 171 SLGVDVRVCDIGRDINEVISSYEVEIGGRMWPIRPISDLHGHSISQFRIHGGISIPAVNN 230
Query: 507 GEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFEASYIPLRLASSKSLLNTINKN 566
+ T ++ + FYA+ETF +TGKG + D SH++ N S L + + +
Sbjct: 231 RDTTRIKGDSFYAVETFATTGKGSIDDRPPCSHFVLNTYKSR-KLFNKDLIKVYEFVKDS 289
Query: 567 FGTLAFCKRWLDRAGCTK--YQMALKDLCDKGIVEAYPPLCDIKGSYTAQFEHTIVLRPT 624
GTL F R LD G K ++ L G++ YPPL DI G AQFEHT+ L
Sbjct: 290 LGTLPFSPRHLDYYGLVKGGSLKSVNLLTMMGLLTPYPPLNDIDGCKVAQFEHTVYLSEH 349
Query: 625 CKEVISRGDDY 635
KEV++RGDDY
Sbjct: 350 GKEVLTRGDDY 360
Score = 140 bits (354), Expect = 7e-37
Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 19/164 (11%)
Query: 106 NGNFPVGQEMEYPTLKDGRTGKDRFTNEEKKAIDRLHNDMYNEARQAAEAHRQVRKHMMG 165
+G + G+ + + + +D+ +AR+AAEAHR+ R +
Sbjct: 22 DGVYGKGKLFDS---------------RNMEIENFTESDILQDARRAAEAHRRARYRVQS 66
Query: 166 WIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCAAHYTPNNGDK-TVLEF 224
++PG+T++EIV +E +R L+ + G+ FP G S N CAAHYT N G++ VL+
Sbjct: 67 IVRPGITLLEIVRSIEDSTRTLLKGE-RNNGIGFPAGMSMNSCAAHYTVNPGEQDIVLKE 125
Query: 225 DDITKIDFGTHING--EEVAKKKKKKKNKNKAAAATEEAPKNGI 266
DD+ KIDFGTH +G + A K+N A E + GI
Sbjct: 126 DDVLKIDFGTHSDGRIMDSAFTVAFKENLEPLLVAAREGTETGI 169
Score = 32.4 bits (74), Expect = 0.37
Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
Query: 36 QQTTPPSIPVSQLYPDDD--EIEDGDVEDGAAEASKKKKRKKKKKKAGAGEAAADV 89
+P+ L D + + D + E + + ++ A EA
Sbjct: 7 LLNQAEELPIEFLPKDGVYGKGKLFDSRNMEIENFTESDILQDARR--AAEAHRRA 60
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 404 bits (1040), Expect = e-138
Identities = 107/306 (34%), Positives = 160/306 (52%), Gaps = 20/306 (6%)
Query: 327 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCA 386
+A E ++VR+ + +PGM ++E+ E +EK L AFP S N A
Sbjct: 7 MKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIM------ELGGKPAFPVNLSINEIA 60
Query: 387 AHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAVRDATNTGIK 446
AHYTP GD TVL+ D KID G HI+G I D A T+ + D+L+EA ++A N I
Sbjct: 61 AHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDELMEAAKEALNAAIS 120
Query: 447 AAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVP-IVR 505
A V + E+G AI+ + K I NL+GH I+ Y++HAG ++P I R
Sbjct: 121 VARAGVEIKELGKAIENEIRKRG---------FKPIVNLSGHKIERYKLHAGISIPNIYR 171
Query: 506 GGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFEASYIPLRLASSKSLLNTINK 565
+ +++E + +AIE F + G G V + YM + P+R+A ++ LL I +
Sbjct: 172 PHDNYVLKEGDVFAIEPFATIGAGQVIEVPPTLIYMYVRDV---PVRVAQARFLLAKIKR 228
Query: 566 NFGTLAFCKRWL-DRAGCTKYQMALKDLCDKGIVEAYPPLCDIKGSYTAQFEHTIVLRPT 624
+GTL F RWL + + ++ALK L G + YP L +I+ AQFEHTI++
Sbjct: 229 EYGTLPFAYRWLQNDMPEGQLKLALKTLEKAGAIYGYPVLKEIRNGIVAQFEHTIIVEKD 288
Query: 625 CKEVIS 630
V +
Sbjct: 289 SVIVTT 294
Score = 121 bits (307), Expect = 5e-31
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 150 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCA 209
+A E ++VR+ + +PGM ++E+ E +EK L AFP S N A
Sbjct: 7 MKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIM------ELGGKPAFPVNLSINEIA 60
Query: 210 AHYTPNNGDKTVLEFDDITKIDFGTHING 238
AHYTP GD TVL+ D KID G HI+G
Sbjct: 61 AHYTPYKGDTTVLKEGDYLKIDVGVHIDG 89
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 379 bits (975), Expect = e-127
Identities = 66/341 (19%), Positives = 145/341 (42%), Gaps = 18/341 (5%)
Query: 306 RFTNEEKKAIDRLHN-DMYNEARQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKY---- 360
+ E+++ + + + + + +V + ++ G++++ + E+ +
Sbjct: 7 HHSGEDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEE 66
Query: 361 -SRLLIGEDGLKAGLAFPTGCSRNHCAAHYTPNNGDKT-VLEFDDITKIDFGTHINGRII 418
++ E +K G+AFPT S N+C H++P D+ +L+ D+ KID G H++G I
Sbjct: 67 TGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIA 126
Query: 419 DCAFTLAYNNKYDKLIEAV-RDATNTGIKAAGIDVPLCEVGAAIQEVMESYEVEIDGKTY 477
+ A T + + D A + L + G +V E++ ++
Sbjct: 127 NVAHTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVA--HSF 184
Query: 478 QVKSIRNLNGHSIDSYRIHAGKTV------PIVRGGEGTLMEENEFYAIETFGSTGKGMV 531
I + H + + I KT+ + E E +E YA++ S+G+G
Sbjct: 185 NCTPIEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKA 244
Query: 532 HDDMDVSHYMKNFEASYIPLRLASSKSLLNTINKNFGTLAFCKRWLDRAGCTKYQMALKD 591
D + K + L++ +S++ + + + F + F R + K +M + +
Sbjct: 245 KDAGQRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEK--KARMGVVE 302
Query: 592 LCDKGIVEAYPPLCDIKGSYTAQFEHTIVLRPTCKEVISRG 632
+++ + L + +G + AQF+ T++L P I+ G
Sbjct: 303 CAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSG 343
Score = 131 bits (330), Expect = 3e-33
Identities = 25/117 (21%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 129 RFTNEEKKAIDRLHN-DMYNEARQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKY---- 183
+ E+++ + + + + + +V + ++ G++++ + E+ +
Sbjct: 7 HHSGEDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEE 66
Query: 184 -SRLLIGEDGLKAGLAFPTGCSRNHCAAHYTPNNGDKT-VLEFDDITKIDFGTHING 238
++ E +K G+AFPT S N+C H++P D+ +L+ D+ KID G H++G
Sbjct: 67 TGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDG 123
Score = 29.3 bits (66), Expect = 4.2
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 31 KNGVPQQTTPPSIPVSQLYPDDDEIEDGDVEDG-AAEASKKKKRKKKKKKAGAGEAAADV 89
NG + T+ P P LY + E++D +++ + AS+K ++KKKKK + E A
Sbjct: 334 PNGPMRITSGPFEP--DLYKSEMEVQDAELKALLQSSASRKTQKKKKKKASKTAENATSG 391
Query: 90 P 90
Sbjct: 392 E 392
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 63.8 bits (156), Expect = 2e-11
Identities = 50/206 (24%), Positives = 75/206 (36%), Gaps = 16/206 (7%)
Query: 322 MYNEARQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFP-TGC 380
M A VR K G++ +E+ + E R FP + C
Sbjct: 43 MAAAGSIVGAALVAVRDA----AKAGVSTLELDQVAESVIREAGAVPSFLGYHGFPASIC 98
Query: 381 -SRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLA---YNNKYDKLIEA 436
S N H P+ VL D+ ID G ++G D A+T A + L EA
Sbjct: 99 SSVNDQVVHGIPS--ATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDEALSEA 156
Query: 437 VRDATNTGIKAAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIH 496
R + GI A L +V AI+ + E + + + + + GH I +H
Sbjct: 157 TRLSMEAGIAAMIPGNRLTDVSHAIELGTRAAE-KQFDRAFGI--VDGYGGHGIGR-SMH 212
Query: 497 AGKTVP-IVRGGEGTLMEENEFYAIE 521
+P G+G L+ AIE
Sbjct: 213 LDPFLPNEGAPGKGPLLAVGSVLAIE 238
Score = 40.3 bits (95), Expect = 0.001
Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Query: 145 MYNEARQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFP-TGC 203
M A VR K G++ +E+ + E R FP + C
Sbjct: 43 MAAAGSIVGAALVAVRDA----AKAGVSTLELDQVAESVIREAGAVPSFLGYHGFPASIC 98
Query: 204 -SRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHING 238
S N H P+ VL D+ ID G ++G
Sbjct: 99 SSVNDQVVHGIPS--ATAVLADGDLVSIDCGAILDG 132
Score = 27.9 bits (63), Expect = 9.3
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 609 GSYTAQFEHTIVLRPTCKEVIS 630
GS A +EHT+ + +++
Sbjct: 262 GSRAAHWEHTVAVTEAGPRILT 283
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 63.1 bits (154), Expect = 1e-10
Identities = 28/233 (12%), Positives = 63/233 (27%), Gaps = 23/233 (9%)
Query: 254 AAAATEEAPKNGIPQQTTPPSIPVSQL--YPDGNFPVGQEMEYPTLKDGRTGKDRFTNEE 311
+ B I S + G +G E ++ TL R + E
Sbjct: 84 GGMPWRRSFGBNIVYTDWKRDNFYSAVKKLVKGAKZIGIEHDHVTLBHRRZLZKALPGTE 143
Query: 312 KKAIDRLHNDM--------YNEARQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRL 363
+ B RZ A I G+ E+
Sbjct: 144 FVDVGZPVMWZRVIKSSEEZBLIRZGARISDIGGAATAAAISAGVPEYEVAIATTBAMVR 203
Query: 364 LIGEDG-----LKAGLAFPTGCSRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRII 418
I B + + F +G N AH B V+Z DI ++ I G
Sbjct: 204 ZIARBFPYVELMDTWIWFQSG--INTDGAHNPVTB---RVVZRGDILSLNCFPMIFGYYT 258
Query: 419 DCAFTLAY---NNKYDKLIEAVRDATNTGIKAAGIDVPLCEVGAAIQEVMESY 468
TL B+ ++ Z G++ ++ + + ++ +
Sbjct: 259 ALERTLFLZZVBDASLZIWZKNTAVHRRGLZLIKPGARCKDIASELNBMYRZW 311
Score = 49.2 bits (118), Expect = 3e-06
Identities = 23/174 (13%), Positives = 47/174 (27%), Gaps = 19/174 (10%)
Query: 78 KKAGAGEAAADVPIDGNGIAEQLEQCGLNGNFPVGQEMEYPTLKDGRTGKDRFTNEEKKA 137
+ G+ + +++ +G E ++ TL R + E
Sbjct: 88 WRRSFGBNIVYTDWKRDNFYSAVKKLVKGAK-ZIGIEHDHVTLBHRRZLZKALPGTEFVD 146
Query: 138 IDRLHNDM--------YNEARQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIG 189
+ B RZ A I G+ E+ I
Sbjct: 147 VGZPVMWZRVIKSSEEZBLIRZGARISDIGGAATAAAISAGVPEYEVAIATTBAMVRZIA 206
Query: 190 EDG-----LKAGLAFPTGCSRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHING 238
B + + F +G N AH B V+Z DI ++ I G
Sbjct: 207 RBFPYVELMDTWIWFQSG--INTDGAHNPVTB---RVVZRGDILSLNCFPMIFG 255
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 58.7 bits (143), Expect = 1e-09
Identities = 50/206 (24%), Positives = 78/206 (37%), Gaps = 22/206 (10%)
Query: 322 MYNEARQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFP-TGC 380
M + A A R+VRK I PG T ++ + + + L + K + C
Sbjct: 25 MKKAGKAVAVALREVRKV----IVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGYKYATC 80
Query: 381 -SRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLA---YNNKYDKLIEA 436
S N H P + V + DI +D G G D A T + + +L+
Sbjct: 81 VSVNEEVVHGLP--LKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKELVRV 138
Query: 437 VRDATNTGIKAAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIH 496
R+ IK + L +V IQE +ES + V IR+ GH + +H
Sbjct: 139 TREVLEKAIKMIKPGIRLGDVSHCIQETVESV-------GFNV--IRDYVGHGVGR-ELH 188
Query: 497 AGKTVP-IVRGGEGTLMEENEFYAIE 521
+P G G ++ + AIE
Sbjct: 189 EDPQIPNYGTPGTGVVLRKGMTLAIE 214
Score = 38.6 bits (91), Expect = 0.004
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 145 MYNEARQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFP-TGC 203
M + A A R+VRK I PG T ++ + + + L + K + C
Sbjct: 25 MKKAGKAVAVALREVRKV----IVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGYKYATC 80
Query: 204 -SRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHING 238
S N H P + V + DI +D G G
Sbjct: 81 VSVNEEVVHGLP--LKEKVFKEGDIVSVDVGAVYQG 114
Score = 29.0 bits (66), Expect = 3.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 609 GSYTAQFEHTIVLRPTCKEVISR 631
GS A FEHTI++ E++++
Sbjct: 238 GSRCAHFEHTILITENGAEILTK 260
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 59.6 bits (145), Expect = 1e-09
Identities = 18/148 (12%), Positives = 42/148 (28%), Gaps = 9/148 (6%)
Query: 327 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKA-GLAFPTG-CSRNH 384
R A ++ + + E+ + I + + T S +
Sbjct: 167 RHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMDTWTWFQSGIN 226
Query: 385 CA-AHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAY---NNKYDKLIEAVRDA 440
AH + DI ++ I G TL ++ + +L + +
Sbjct: 227 TDGAHNPVTT---RKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVEV 283
Query: 441 TNTGIKAAGIDVPLCEVGAAIQEVMESY 468
G+K ++ + E+ +
Sbjct: 284 HEAGLKLIKPGARCSDIARELNEIFLKH 311
Score = 45.0 bits (107), Expect = 5e-05
Identities = 12/92 (13%), Positives = 24/92 (26%), Gaps = 6/92 (6%)
Query: 150 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKA-GLAFPTG-CSRNH 207
R A ++ + + E+ + I + + T S +
Sbjct: 167 RHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMDTWTWFQSGIN 226
Query: 208 CA-AHYTPNNGDKTVLEFDDITKIDFGTHING 238
AH + DI ++ I G
Sbjct: 227 TDGAHNPVTT---RKVNKGDILSLNCFPMIAG 255
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 58.3 bits (142), Expect = 1e-09
Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 23/206 (11%)
Query: 322 MYNEARQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFP-TGC 380
M A+ HR +R IKPG+T +I + + G + C
Sbjct: 13 MDESGELLADVHRHLRTF----IKPGITSWDIEVFVRDFIESHGGVAAQIGYEGYKYATC 68
Query: 381 -SRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLA---YNNKYDKLIEA 436
S N H P K VL+ D+ K+D + G I D ++ + D+L+E
Sbjct: 69 CSINDEICHGFPR---KKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLMEV 125
Query: 437 VRDATNTGIKAAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIH 496
+ A GI+ A + + ++G AIQ +E + Y V +R+ GH I IH
Sbjct: 126 TKKALYLGIEQAQVGNRIGDIGHAIQTYVEG-------EGYGV--VRDFVGHGIGP-TIH 175
Query: 497 AGKTVP-IVRGGEGTLMEENEFYAIE 521
+P G+G ++E IE
Sbjct: 176 ESPMIPHYGEAGKGLRLKEGMVITIE 201
Score = 37.5 bits (88), Expect = 0.008
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 145 MYNEARQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFP-TGC 203
M A+ HR +R IKPG+T +I + + G + C
Sbjct: 13 MDESGELLADVHRHLRTF----IKPGITSWDIEVFVRDFIESHGGVAAQIGYEGYKYATC 68
Query: 204 -SRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHING 238
S N H P K VL+ D+ K+D + G
Sbjct: 69 CSINDEICHGFPR---KKVLKDGDLIKVDMCVDLKG 101
Score = 29.0 bits (66), Expect = 4.0
Identities = 4/26 (15%), Positives = 13/26 (50%)
Query: 609 GSYTAQFEHTIVLRPTCKEVISRGDD 634
G + Q+EH++ + +++ +
Sbjct: 225 GGLSCQYEHSLAITKEGPRILTSQGE 250
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 57.6 bits (140), Expect = 5e-09
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 14/147 (9%)
Query: 327 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTG-CSRNHC 385
A+ +V + ++ W GM E+ ++E R L + G+AF S +
Sbjct: 141 EHASRIADKVFEEILTWDLIGMKERELALKIELLIREL-SD-----GIAFEPIVASGENA 194
Query: 386 A-AHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAY---NNKYDKLIEAVRDAT 441
A H+ P G++ + DI +D+G G D T+ + + K+ E V+DA
Sbjct: 195 ANPHHEP--GER-KIRKGDIIILDYGARWKGYCSDITRTIGLGELDERLVKIYEVVKDAQ 251
Query: 442 NTGIKAAGIDVPLCEVGAAIQEVMESY 468
+ KA + +V + +EV+
Sbjct: 252 ESAFKAVREGIKAKDVDSRAREVISKA 278
Score = 46.9 bits (112), Expect = 1e-05
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 150 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTG-CSRNHC 208
A+ +V + ++ W GM E+ ++E R L + G+AF S +
Sbjct: 141 EHASRIADKVFEEILTWDLIGMKERELALKIELLIREL-SD-----GIAFEPIVASGENA 194
Query: 209 A-AHYTPNNGDKTVLEFDDITKIDFGTHING 238
A H+ P G++ + DI +D+G G
Sbjct: 195 ANPHHEP--GER-KIRKGDIIILDYGARWKG 222
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 57.2 bits (139), Expect = 6e-09
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 13/147 (8%)
Query: 327 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCA 386
++AA+ +H++ +I+PG++ IE+ ELE + R G +F + +
Sbjct: 140 KEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQ-GAT----SSSFDIIVASGLRS 194
Query: 387 A--HYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIE---AVRDAT 441
A H +K V+E D +DFG + G D T+A DKL E V +A
Sbjct: 195 ALPHGVA--SEK-VIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKEIYNIVLEAQ 251
Query: 442 NTGIKAAGIDVPLCEVGAAIQEVMESY 468
G+ + E A ++ +
Sbjct: 252 LRGVNGIKAGLTGREADALTRDYITEK 278
Score = 46.8 bits (112), Expect = 1e-05
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 150 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCA 209
++AA+ +H++ +I+PG++ IE+ ELE + R G +F + +
Sbjct: 140 KEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQ-GAT----SSSFDIIVASGLRS 194
Query: 210 A--HYTPNNGDKTVLEFDDITKIDFGTHING 238
A H +K V+E D +DFG + G
Sbjct: 195 ALPHGVA--SEK-VIETGDFVTLDFGAYYKG 222
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 56.8 bits (138), Expect = 7e-09
Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 13/147 (8%)
Query: 327 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTG-CSRNHC 385
+A E + + I G E+ ++E ++ E AF T S
Sbjct: 137 EKACEIADKAVMAAIEEITEGKKEREVAAKVEYLMKMNGAE-----KPAFDTIIASGYRS 191
Query: 386 AA-HYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAY---NNKYDKLIEAVRDAT 441
A H DK +E D+ ID G D T+ N K ++ E V +A
Sbjct: 192 ALPHGVA--SDK-RIERGDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIYEIVLEAQ 248
Query: 442 NTGIKAAGIDVPLCEVGAAIQEVMESY 468
+++A + E+ + + ++ Y
Sbjct: 249 KKAVESAKPGITAKELDSIARNIIAEY 275
Score = 46.8 bits (112), Expect = 1e-05
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 10/91 (10%)
Query: 150 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTG-CSRNHC 208
+A E + + I G E+ ++E ++ E AF T S
Sbjct: 137 EKACEIADKAVMAAIEEITEGKKEREVAAKVEYLMKMNGAE-----KPAFDTIIASGYRS 191
Query: 209 AA-HYTPNNGDKTVLEFDDITKIDFGTHING 238
A H DK +E D+ ID G
Sbjct: 192 ALPHGVA--SDK-RIERGDLVVIDLGALYQH 219
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 56.8 bits (138), Expect = 9e-09
Identities = 37/147 (25%), Positives = 57/147 (38%), Gaps = 13/147 (8%)
Query: 327 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCA 386
+QA E + + I+ GMT EI LE R G + G+AF T + +
Sbjct: 143 KQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMRKE-GAE----GVAFDTIVASGCRS 197
Query: 387 A--HYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIE---AVRDAT 441
A H DK V+E D+ IDFG D ++ D++ E V +A
Sbjct: 198 ALPHGKA--SDK-VVERGDVIVIDFGATYENYCADITRVVSIGEPSDEVKEVHSIVLEAQ 254
Query: 442 NTGIKAAGIDVPLCEVGAAIQEVMESY 468
+K A V + + +E +
Sbjct: 255 ERALKIAKAGVTGKLLDSVAREFIREK 281
Score = 46.8 bits (112), Expect = 1e-05
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 150 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCA 209
+QA E + + I+ GMT EI LE R G + G+AF T + +
Sbjct: 143 KQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMRKE-GAE----GVAFDTIVASGCRS 197
Query: 210 A--HYTPNNGDKTVLEFDDITKIDFGTHING 238
A H DK V+E D+ IDFG
Sbjct: 198 ALPHGKA--SDK-VVERGDVIVIDFGATYEN 225
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 56.5 bits (137), Expect = 1e-08
Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 13/147 (8%)
Query: 327 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCA 386
+A A +V + ++ PG T ++ ++ + G +AF S H A
Sbjct: 160 AKAGAAIDRVHARVPAFLVPGRTEAQVAADIAEAIVAE-GHS----AVAFVIVGSGPHGA 214
Query: 387 A-HYTPNNGDKTVLEFDDITKIDFGTHIN-GRIIDCAFTLAY---NNKYDKLIEAVRDAT 441
H+ D+ L+ DI +D G G D T + + + A++ A
Sbjct: 215 DPHHGY--SDR-KLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQ 271
Query: 442 NTGIKAAGIDVPLCEVGAAIQEVMESY 468
+ A V +V AA ++V+
Sbjct: 272 RAAVDAVRPGVTAAQVDAAARDVLADA 298
Score = 45.3 bits (108), Expect = 4e-05
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 150 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCA 209
+A A +V + ++ PG T ++ ++ + G +AF S H A
Sbjct: 160 AKAGAAIDRVHARVPAFLVPGRTEAQVAADIAEAIVAE-GHS----AVAFVIVGSGPHGA 214
Query: 210 A-HYTPNNGDKTVLEFDDITKIDFGTHIN 237
H+ D+ L+ DI +D G
Sbjct: 215 DPHHGY--SDR-KLQVGDIVVVDIGGTYE 240
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 54.4 bits (132), Expect = 2e-08
Identities = 41/211 (19%), Positives = 65/211 (30%), Gaps = 41/211 (19%)
Query: 327 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGL---AFP-TGC-S 381
A+ ++ KPG+T E+ ++ + A + FP C S
Sbjct: 17 YICAKVRNTMQAA----TKPGITTKELDNIAKEL---FEEYGAISAPIHDENFPGQTCIS 69
Query: 382 RNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNN----KYDKLIEAV 437
N AH P+ K V+ D+ ID NG D + K+ +
Sbjct: 70 VNEEVAHGIPS---KRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVA 126
Query: 438 RDATNTGIKAAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSI------D 491
A I L +G A+ +V I+NL GH +
Sbjct: 127 TMAFENAIAKVKPGTKLSNIGKAVHNTARQ-------NDLKV--IKNLTGHGVGLSLHEA 177
Query: 492 SYRI-HAGKTVPIVRGGEGTLMEENEFYAIE 521
+ + + TL+ E AIE
Sbjct: 178 PAHVLNYFDP------KDKTLLTEGMVLAIE 202
Score = 34.8 bits (81), Expect = 0.061
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 15/94 (15%)
Query: 150 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGL---AFP-TGC-S 204
A+ ++ KPG+T E+ ++ + A + FP C S
Sbjct: 17 YICAKVRNTMQAA----TKPGITTKELDNIAKEL---FEEYGAISAPIHDENFPGQTCIS 69
Query: 205 RNHCAAHYTPNNGDKTVLEFDDITKIDFGTHING 238
N AH P+ K V+ D+ ID NG
Sbjct: 70 VNEEVAHGIPS---KRVIREGDLVNIDVSALKNG 100
Score = 29.4 bits (67), Expect = 2.9
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 609 GSYTAQFEHTIVLRPTCKEVISRGDD 634
S+ AQ EHT+++ + ++ ++
Sbjct: 226 KSFVAQIEHTVIVTKDGPILTTKIEE 251
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 2e-07
Identities = 85/637 (13%), Positives = 186/637 (29%), Gaps = 230/637 (36%)
Query: 43 IPVSQLYPDDDEIEDGDVEDGAAEASK---KKKRKKKKKKAGAGEAAADVPID-----GN 94
+ V + D +++ D +D + K K+ + +
Sbjct: 22 LSVFE----DAFVDNFDCKD-VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 95 GIAEQLEQCGLNGNF-----PVGQEMEYPTLKDGRTGKDRFTNEEKKAIDRLHNDM---- 145
+ ++ + L N+ P+ E P++ + + DRL+ND
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM-----TRMYIEQ----RDRLYNDNQVFA 127
Query: 146 -YNEARQAAEAHRQVRKH--------------MMG------------------------- 165
YN +R + + ++R+ ++G
Sbjct: 128 KYNVSRL--QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 166 WIKPG-----MTMIEI-------------------------VEELEKYSRLLIGEDGLKA 195
W+ T++E+ + ++ R L+ +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 196 GL-------------AFPTGC-----SRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHIN 237
L AF C +R K V D THI+
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTR------------FKQVT---DFLSAATTTHIS 290
Query: 238 GEEVAKKKKKKKNKNKAAAATEEAPKNGIPQQ---TTPPSIPVSQLYPDGNFPVGQEMEY 294
+ + + K+ + P++ +P++ T P + + + + +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREVLTTNPRRLSI----------IAESI-- 337
Query: 295 PTLKDGRTGKDRFTNEEKKAIDRLHN--DMYNEARQAAEAHRQV-------RKH------ 339
R G + N + D+L + + AE +R++
Sbjct: 338 ------RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-YRKMFDRLSVFPPSAHIPTI 390
Query: 340 --MMGWIK-PGMTMIEIVEELEKYSRLLIGEDGLKA-----GLAFPTGCSRN-----H-- 384
+ W ++ +V +L KYS L+ + ++ + H
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 385 CAAHYTPNNGDKTVLEFDDITK--ID------FGTHI----NGRIIDCAFTLAYNNKYDK 432
HY + DD+ +D G H+ + + F + + + +
Sbjct: 449 IVDHYNIPKT----FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT-LFRMVFLD--FR 501
Query: 433 LIEA-VRDATNTGIKAAGIDVPLCEVGAAIQEVMESYEVEI--DGKTYQ--VKSIRN-LN 486
+E +R +T A+G + +Q++ + Y+ I + Y+ V +I + L
Sbjct: 502 FLEQKIR-HDSTAWNASGSILNT------LQQL-KFYKPYICDNDPKYERLVNAILDFLP 553
Query: 487 GHSIDSYRIHAGKTVPIVRGGEGTLMEENEFYAIETF 523
+ K ++R LM E+E E
Sbjct: 554 KIEENLIC---SKYTDLLRIA---LMAEDEAIFEEAH 584
Score = 45.2 bits (106), Expect = 6e-05
Identities = 41/248 (16%), Positives = 79/248 (31%), Gaps = 58/248 (23%)
Query: 396 KTVL---EFDDITKIDFGTHING--RIIDCAFTLAYNNKYDKLIEAVRDATNTGIKAAGI 450
K++L E D I ++G R+ K +E V N
Sbjct: 43 KSILSKEEIDHIIMS--KDAVSGTLRLFWT-LLSKQEEMVQKFVEEV-LRINYKF----- 93
Query: 451 DVPLCEVGAAIQEVMESYEVEIDGKTY--QVKSIRNLNGHSIDSYRIHAGKTVPIVRGGE 508
+ + I+ E + + + Y Q + N + Y + + +R
Sbjct: 94 ------LMSPIKT--EQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQA- 143
Query: 509 GTLME--ENEFYAIETFGSTGK----GMVHDDMDVSHYMKNFEASYIPLR--------LA 554
L+E + I+ +GK V V M +F+ ++ L+ L
Sbjct: 144 --LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM-DFKIFWLNLKNCNSPETVLE 200
Query: 555 SSKSLLNTINKNFGTLA-----------FCKRWLDRAGCTK-YQMAL---KDLCDKGIVE 599
+ LL I+ N+ + + + L R +K Y+ L ++ +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 600 AYPPLCDI 607
A+ C I
Sbjct: 261 AFNLSCKI 268
Score = 32.9 bits (74), Expect = 0.38
Identities = 40/290 (13%), Positives = 79/290 (27%), Gaps = 113/290 (38%)
Query: 124 RTGKDRFTNEEKKAIDRLHN--DMYNEARQAAEAHRQV-------RKH--------MMGW 166
R G + N + D+L + + AE +R++ + W
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-YRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 167 IK-PGMTMIEIVEELEKYSRLLIGEDGLKA-----GLAFPTGCSRN-----H--CAAHYT 213
++ +V +L KYS L+ + ++ + H HY
Sbjct: 397 FDVIKSDVMVVVNKLHKYS--LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 214 PNNGDKTVLEFDDITK--ID------FGTHINGEEVAKKKKKKKNKNKAAAATEEAPKNG 265
+ DD+ +D G H+ E ++
Sbjct: 455 IPKT----FDSDDLIPPYLDQYFYSHIGHHLKNIEHPER-------------MTLFRM-- 495
Query: 266 IPQQTTPPSIPVSQLYPDGNFPVGQEMEY------------PTLKDGRTGKDRFTNEEKK 313
++ D F + Q++ + TL+ + K + + K
Sbjct: 496 --------------VFLDFRF-LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 314 AIDRLHND-------------------------MYNEARQAAEAHRQVRK 338
+RL N M + EAH+QV++
Sbjct: 541 -YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
infectious disease, S aminopeptidase, protease,
epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
3mr1_A
Length = 262
Score = 46.4 bits (111), Expect = 1e-05
Identities = 50/204 (24%), Positives = 79/204 (38%), Gaps = 29/204 (14%)
Query: 327 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGL---AFPTGC--S 381
+ AAE + H +KP +T + + + + + + A L FP S
Sbjct: 22 KLAAETLDFITDH----VKPNVTTNSLNDLCHNF---ITSHNAIPAPLNYKGFPKSICTS 74
Query: 382 RNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLA---YNNKYDKLIEAVR 438
NH H PN+ L+ DI ID ++G D + K +LI+
Sbjct: 75 INHVVCHGIPND---KPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRLIQVTY 131
Query: 439 DATNTGIKAAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAG 498
DA GI+ L ++G AIQ E + Y V +R+ GH I H
Sbjct: 132 DAMMKGIEVVRPGAKLGDIGYAIQSYAEKHN-------YSV--VRDYTGHGI-GRVFHDK 181
Query: 499 KTVP-IVRGGEGTLMEENEFYAIE 521
++ R G G ++E F+ +E
Sbjct: 182 PSILNYGRNGTGLTLKEGMFFTVE 205
Score = 29.4 bits (67), Expect = 3.3
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 150 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGL---AFPTGC--S 204
+ AAE + H +KP +T + + + + + + A L FP S
Sbjct: 22 KLAAETLDFITDH----VKPNVTTNSLNDLCHNF---ITSHNAIPAPLNYKGFPKSICTS 74
Query: 205 RNHCAAHYTPNNGDKTVLEFDDITKIDFGTHING 238
NH H PN+ L+ DI ID ++G
Sbjct: 75 INHVVCHGIPND---KPLKNGDIVNIDVTVILDG 105
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold,
structur genomics, structural genomics consortium, SGC,
hydrolase; 1.95A {Plasmodium falciparum}
Length = 368
Score = 46.9 bits (112), Expect = 1e-05
Identities = 51/267 (19%), Positives = 81/267 (30%), Gaps = 45/267 (16%)
Query: 267 PQQTTPPSIPVSQLYPDGNFPVGQEMEYPTLKDGRTGKDRFTNEEKKAIDRLHNDMYNEA 326
P I PD + L R NEE I R +
Sbjct: 70 KINHVPSHIER----PD---YAISSIPESELIYKRKSDIYVNNEE--EIQR----IREAC 116
Query: 327 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGL---AFPTGC--S 381
+ + PG+T EI ++ ++ +I + + L FP C S
Sbjct: 117 ILGRKTLDYAHTL----VSPGVTTDEIDRKVHEF---IIKNNAYPSTLNYYKFPKSCCTS 169
Query: 382 RNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTL------AYNNKYDKLIE 435
N H P D L+ DI ID G D T + +L+E
Sbjct: 170 VNEIVCHGIP---DYRPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKELVE 226
Query: 436 AVRDATNTGIKAAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRI 495
+ IK + +G I + + V +R+ +GH +
Sbjct: 227 TCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSKK-------NFSV--VRSYSGHGVGKL-F 276
Query: 496 HAGKTVP-IVRGGEGTLMEENEFYAIE 521
H+ TVP + +M+ + IE
Sbjct: 277 HSNPTVPHFKKNKAVGIMKPGHVFTIE 303
Score = 30.0 bits (68), Expect = 2.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 609 GSYTAQFEHTIVLRPTCKEV 628
G +AQFEHT+++ E+
Sbjct: 327 GKLSAQFEHTLLITNNGVEI 346
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex;
HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB:
3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A*
1y1n_A 1yj3_A
Length = 285
Score = 46.0 bits (110), Expect = 2e-05
Identities = 61/265 (23%), Positives = 93/265 (35%), Gaps = 50/265 (18%)
Query: 267 PQQTTPPSIPVSQLYPD-GNFPVGQEMEYPTLKDGRTGKDRFTNEEKKAIDRLHNDMYNE 325
P + P I P+ P QE P ++ + I++ M
Sbjct: 14 PTRPVPNWIAR----PEYVGKPAAQEGSEPWVQT------------PEVIEK----MRVA 53
Query: 326 ARQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGL---AFPTGC-- 380
R AA A + K + PG+T E+ +Y L+ + L FP C
Sbjct: 54 GRIAAGALAEAGKA----VAPGVTTDELDRIAHEY---LVDNGAYPSTLGYKGFPKSCCT 106
Query: 381 SRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLA---YNNKYDKLIEAV 437
S N H P D TV+ DI ID +I G D T +++ L++
Sbjct: 107 SLNEVICHGIP---DSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRT 163
Query: 438 RDATNTGIKAAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHA 497
R+AT I L +G I+ + Y V +R+ GH I + H
Sbjct: 164 REATMRAINTVKPGRALSVIGRVIESYANRFG-------YNV--VRDFTGHGIGTT-FHN 213
Query: 498 GKTVP-IVRGGEGTLMEENEFYAIE 521
G V + T+M+ + IE
Sbjct: 214 GLVVLHYDQPAVETIMQPGMTFTIE 238
Score = 29.4 bits (67), Expect = 3.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 609 GSYTAQFEHTIVLRPTCKEVISR 631
+TAQFEHT+++ T E+++
Sbjct: 262 RKWTAQFEHTLLVTDTGVEILTC 284
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 46.1 bits (109), Expect = 3e-05
Identities = 18/182 (9%), Positives = 52/182 (28%), Gaps = 26/182 (14%)
Query: 326 ARQAAEAHRQV-RKHMMGWIKPG--MTMIEIVEELE----------KYSRLLIGEDGLKA 372
+R + + + +I G +T + +++E S L D +
Sbjct: 190 SRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQTKSLKLGDIDLDQL 249
Query: 373 GLAFPTGCS--RNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYN--N 428
+ ++ D L D + G + T ++ +
Sbjct: 250 EWCYTPIIQSGGSYDLKPSAI--TDDRNLHGDVVL-CSLGFRYKSYCSNVGRTYLFDPDS 306
Query: 429 KYDKLIEAVRDATNTGIKAAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGH 488
+ K + + + ++ I ++ + +++ V+++ G
Sbjct: 307 EQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLEP--NFVRNL----GA 360
Query: 489 SI 490
I
Sbjct: 361 GI 362
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab;
HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A
2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Length = 329
Score = 45.3 bits (108), Expect = 3e-05
Identities = 56/264 (21%), Positives = 86/264 (32%), Gaps = 40/264 (15%)
Query: 267 PQQTTPPSIPVSQLYPDGNFPVGQEMEYPTLKDGRTGKDRFTNEEKKAIDRLHNDMYNEA 326
P + P I PD + + G + + I+ M
Sbjct: 40 PTRPVPSYIQR----PD---YADHPLGMSESEQALKGTSQIKLLSSEDIEG----MRLVC 88
Query: 327 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGL---AFPTGC--S 381
R A E IKPG+T EI + I + + L FP C S
Sbjct: 89 RLAREVLDVAAGM----IKPGVTTEEIDHAVHLA---CIARNCYPSPLNYYNFPKSCCTS 141
Query: 382 RNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLA---YNNKYDKLIEAVR 438
N H P D+ L+ DI +D + NG D T ++ KL++
Sbjct: 142 VNEVICHGIP---DRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTY 198
Query: 439 DATNTGIKAAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAG 498
+ I A V E+G IQ+ ++ + V +R+ GH I H
Sbjct: 199 ECLMQAIDAVKPGVRYRELGNIIQKHAQAN-------GFSV--VRSYCGHGIHKL-FHTA 248
Query: 499 KTVP-IVRGGEGTLMEENEFYAIE 521
VP + +M+ + IE
Sbjct: 249 PNVPHYAKNKAVGVMKSGHVFTIE 272
Score = 29.9 bits (68), Expect = 2.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 609 GSYTAQFEHTIVLRPTCKEV 628
G +AQFEHT+++ T E+
Sbjct: 296 GKRSAQFEHTLLVTDTGCEI 315
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 7e-05
Identities = 43/275 (15%), Positives = 83/275 (30%), Gaps = 97/275 (35%)
Query: 272 PPSIPVSQLYPDGNFPVGQE-------MEYPTLKDGRTGKDRFTNEEKKAIDRLHNDMYN 324
P ++ + + G G+ M + T+ DG+ ++ E + +
Sbjct: 1669 PVNLTI---HFGG--EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY---TFR 1720
Query: 325 EARQAAEAHR----QVRKHMMGWIKPGMTMIE--IVEELEKYSRLLIGEDGLKAG----- 373
+ Q P +T++E E+L+ S+ LI D AG
Sbjct: 1721 S--EKGLLSATQFTQ----------PALTLMEKAAFEDLK--SKGLIPADATFAGHSLGE 1766
Query: 374 ---LAFPTGCSRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKY 430
LA A V+ + + ++ G + A +
Sbjct: 1767 YAALA---------SLA------D---VMSIESLVEV---VFYRGMTMQVAVPRDELGRS 1805
Query: 431 DKLIEAVRDATNTGIKAAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSI 490
+ + A+ N G AA A+Q V+E + +T + I N N
Sbjct: 1806 NYGMIAI----NPGRVAASFSQ------EALQYVVE----RVGKRTGWLVEIVNYNV--- 1848
Query: 491 DSYRIHAGKTVPIVRGGEGTLMEENEFYAIETFGS 525
+ V G+ + A++T +
Sbjct: 1849 ------ENQQ--YVAAGD---LR-----ALDTVTN 1867
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A*
2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A*
2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A*
3mat_A* 1yvm_A* 2mat_A ...
Length = 263
Score = 43.3 bits (103), Expect = 1e-04
Identities = 42/204 (20%), Positives = 77/204 (37%), Gaps = 27/204 (13%)
Query: 327 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGL---AFPTGC--S 381
R AAE + + +KPG++ E+ Y ++ + + A L +P S
Sbjct: 18 RLAAEVLEMIEPY----VKPGVSTGELDRICNDY--IVNEQHAVSACLGYHGYPKSVCIS 71
Query: 382 RNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAY---NNKYDKLIEAVR 438
N H P+ D +L+ DI ID +G D + ++L +
Sbjct: 72 INEVVCHGIPD--DAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQ 129
Query: 439 DATNTGIKAAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAG 498
++ ++ + L E+GAAIQ+ +E+ + + V +R GH I H
Sbjct: 130 ESLYLALRMVKPGINLREIGAAIQKFVEA-------EGFSV--VREYCGHGI-GRGFHEE 179
Query: 499 KTVP-IVRGGEGTLMEENEFYAIE 521
V +++ + IE
Sbjct: 180 PQVLHYDSRETNVVLKPGMTFTIE 203
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 38.1 bits (88), Expect = 0.008
Identities = 21/185 (11%), Positives = 48/185 (25%), Gaps = 16/185 (8%)
Query: 313 KAIDRLHNDMYNEARQAAE-AHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLK 371
K +D L N+M + + + ++ + I + ++ +L +
Sbjct: 195 KFMDLLSNEMVRAVDEELKITNAKLSDKIENKIDDVKFLKQLSPDLSALCPPNYKFNFDL 254
Query: 372 AGLAFPTGCSRNHCAA---HYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYN- 427
+ N L + G N + T +
Sbjct: 255 LDWTYSPIIQSGKKFDLRVSARSTN---DQLYGNGCILASCGIRYNNYCSNITRTFLIDP 311
Query: 428 -NKYDKLIEAVRDATNTGIKAAGID-VPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNL 485
+ + + + EV ++ E +E + E+ K+I
Sbjct: 312 SEEMANNYDFLLTLQKEIVTNILKPGRTPKEVYESVIEYIEKTKPEL--VPNFTKNI--- 366
Query: 486 NGHSI 490
G I
Sbjct: 367 -GSLI 370
Score = 28.8 bits (64), Expect = 5.6
Identities = 11/107 (10%), Positives = 26/107 (24%), Gaps = 7/107 (6%)
Query: 136 KAIDRLHNDMYNEARQAAE-AHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLK 194
K +D L N+M + + + ++ + I + ++ +L +
Sbjct: 195 KFMDLLSNEMVRAVDEELKITNAKLSDKIENKIDDVKFLKQLSPDLSALCPPNYKFNFDL 254
Query: 195 AGLAFPTGCSRNHCAA---HYTPNNGDKTVLEFDDITKIDFGTHING 238
+ N L + G N
Sbjct: 255 LDWTYSPIIQSGKKFDLRVSARSTN---DQLYGNGCILASCGIRYNN 298
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 34.9 bits (81), Expect = 0.076
Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 18/143 (12%)
Query: 329 AAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPT--GCSRNHCA 386
+ V + K M E+ + + + G+K AF T +N
Sbjct: 187 TKDGIYNV----LKHAKADMMEYELEAQFDFTLK----SSGIK-HHAFNTILASGKNATV 237
Query: 387 AHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDK----LIEAVRDATN 442
HY N+ ++ D+ +D G + D ++T N + + V +A
Sbjct: 238 LHYEDNDA---QIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQKQIYNIVLNALK 294
Query: 443 TGIKAAGIDVPLCEVGAAIQEVM 465
+ + + ++V+
Sbjct: 295 ETTEIIKPGLKFAALNEHAKKVL 317
Score = 33.8 bits (78), Expect = 0.17
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 14/84 (16%)
Query: 152 AAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPT--GCSRNHCA 209
+ V + K M E+ + + + G+K AF T +N
Sbjct: 187 TKDGIYNV----LKHAKADMMEYELEAQFDFTLK----SSGIK-HHAFNTILASGKNATV 237
Query: 210 AHYTPNNGDKTVLEFDDITKIDFG 233
HY N+ ++ D+ +D G
Sbjct: 238 LHYEDNDA---QIQNGDLVLLDLG 258
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 34.5 bits (80), Expect = 0.11
Identities = 31/150 (20%), Positives = 52/150 (34%), Gaps = 18/150 (12%)
Query: 322 MYNEARQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPT--G 379
+ A AH + M +PGM + E+ G + ++ T G
Sbjct: 184 LRRAGEITAMAHTRA----MEKCRPGMFEYHLEGEIHHEFN----RHGAR-YPSYNTIVG 234
Query: 380 CSRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDK----LIE 435
N C HYT N + D+ ID G G D T N K+ + + +
Sbjct: 235 SGENGCILHYTENEC---EMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYD 291
Query: 436 AVRDATNTGIKAAGIDVPLCEVGAAIQEVM 465
V ++ T ++ + EV + +M
Sbjct: 292 IVLESLETSLRLYRPGTSILEVTGEVVRIM 321
Score = 33.0 bits (76), Expect = 0.30
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 14/91 (15%)
Query: 145 MYNEARQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPT--G 202
+ A AH + M +PGM + E+ G + ++ T G
Sbjct: 184 LRRAGEITAMAHTRA----MEKCRPGMFEYHLEGEIHHEFN----RHGAR-YPSYNTIVG 234
Query: 203 CSRNHCAAHYTPNNGDKTVLEFDDITKIDFG 233
N C HYT N + D+ ID G
Sbjct: 235 SGENGCILHYTENEC---EMRDGDLVLIDAG 262
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2;
phosphoprotein-binding domain, checkpoint kinase,
transferase; HET: TPO; 2.7A {Homo sapiens} SCOP:
b.26.1.2
Length = 149
Score = 32.7 bits (74), Expect = 0.16
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 190 EDGLKAGLAFPTGCSRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGEEVAKKKK 246
++ L S+ H + + +D + GT +N E V K K+
Sbjct: 63 DEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSG--NGTFVNTELVGKGKR 117
Score = 30.0 bits (67), Expect = 1.3
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 367 EDGLKAGLAFPTGCSRNHCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRII 418
++ L S+ H + + +D + GT +N ++
Sbjct: 63 DEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSG--NGTFVNTELV 112
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M
2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M
2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Length = 136
Score = 29.6 bits (66), Expect = 1.3
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 113 QEMEYPTLKDGRTGKDRFTNEEKKAIDRLHNDMYNEARQAAEAHRQVRKHMMGW---IKP 169
+ ++ R R + K R+ D + A + + ++ W I+P
Sbjct: 39 GRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQP 98
Query: 170 GMTMIEI 176
G + E+
Sbjct: 99 GKVLYEM 105
Score = 29.6 bits (66), Expect = 1.3
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 290 QEMEYPTLKDGRTGKDRFTNEEKKAIDRLHNDMYNEARQAAEAHRQVRKHMMGW---IKP 346
+ ++ R R + K R+ D + A + + ++ W I+P
Sbjct: 39 GRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQP 98
Query: 347 GMTMIEI 353
G + E+
Sbjct: 99 GKVLYEM 105
>2dsq_G Insulin-like growth factor-binding protein 1; IGF, IGFBP, protein
binding/hormone/growth factor complex; 2.80A {Homo
sapiens} SCOP: g.28.1.1
Length = 94
Score = 28.5 bits (63), Expect = 2.0
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 573 CKRWLDRAGCTKYQMALKDLCDKGIVEAYPPLCDIKGSY 611
C+ L R + ++ + I + Y P C+ G Y
Sbjct: 11 CRIELYR--VVESLAKAQETSGEEISKFYLPNCNKNGFY 47
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 2.1
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 134 EKKAIDRLHNDM--YNEARQAAEA 155
EK+A+ +L + Y A +A A
Sbjct: 18 EKQALKKLQASLKLY--ADDSAPA 39
Score = 29.5 bits (65), Expect = 2.1
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 311 EKKAIDRLHNDM--YNEARQAAEA 332
EK+A+ +L + Y A +A A
Sbjct: 18 EKQALKKLQASLKLY--ADDSAPA 39
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain
swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB:
1lgq_A
Length = 116
Score = 28.6 bits (64), Expect = 2.4
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 204 SRNHCAAHYTPNNGDKTVLEFDDI-TKIDFGTHINGEEVAKKKK 246
S +HC +G T+ +D T GT IN +V KK+
Sbjct: 45 SGDHCRIVVDEKSGQVTL---EDTSTS---GTVINKLKVVKKQT 82
>2h7t_A Insulin-like growth factor-binding protein 2; thyroglobulin type 1
fold, protein binding; NMR {Homo sapiens}
Length = 107
Score = 28.3 bits (62), Expect = 3.2
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 573 CKRWLDRA--GCTKYQMALKDLCDKGIVEAYPPLCDIKGSYTA 613
C++ LD+ + ++ + + + + P CD G Y
Sbjct: 9 CQQELDQVLERISTMRLPDERGPLEHLYSLHIPNCDKHGLYNL 51
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 29.7 bits (66), Expect = 3.2
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 10 AKKKKKKKNKNKAAAATEEAPKNGVPQQTTPPSIPVSQLYPDDDEIEDGDVEDGAAEASK 69
A +K K AA + +G T+ L D DE + + D + E +
Sbjct: 550 APEKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEE-ER 608
Query: 70 KKKRK--------KKKKKAGAGEAAADV 89
+KRK K+ + E DV
Sbjct: 609 SRKRKLDEKENLSAKRSRIEQKEELDDV 636
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide,
cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae}
PDB: 2jql_A*
Length = 151
Score = 28.8 bits (64), Expect = 3.4
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 7/45 (15%)
Query: 204 SRNHCAAHYTPNNGDKTVLEFDDITKIDF----GTHINGEEVAKK 244
S H H + D ++ + GT ING + KK
Sbjct: 58 STFHAEFHLLQMDVDNFQ---RNLINVIDKSRNGTFINGNRLVKK 99
>1rmj_A Insulin-like growth factor binding protein 6; hormone/growth factor
complex; NMR {Homo sapiens} SCOP: g.28.1.1
Length = 107
Score = 27.8 bits (61), Expect = 4.0
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 573 CKRWLDRAGCTKYQMALKDLCDKGIVEAYPPLCDIKGSYTAQ--FEHTIVLRPTC 625
C+R LD L+ +G Y P CD +G Y + R C
Sbjct: 30 CRRHLDSV-----LQQLQTEVYRGAQTLYVPNCDHRGFYRKRQCRSSQGQRRGPC 79
>2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.1
PDB: 1smy_C* 1zyr_C* 1iw7_C* 2a69_C* 2a6e_C 2a68_C*
2be5_C* 2cw0_C 2o5i_C 2o5j_C* 2ppb_C* 3aoh_C* 3aoi_C*
3dxj_C* 3eql_C* 1ynj_C* 1ynn_C* 2gho_C 1hqm_C 1l9u_C ...
Length = 1119
Score = 28.4 bits (64), Expect = 8.8
Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 10/82 (12%)
Query: 60 VEDGAAEASKKKKRKKKKKKAGAGEAAADVPIDGNGIAEQLEQCGLNGNFPVG------Q 113
+ DGA E K+ + + +D + L P +
Sbjct: 905 IFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLK 964
Query: 114 EMEYP---TLKDGRTGKDRFTN 132
E+ L DGRTG +
Sbjct: 965 ELFLQGKVVLYDGRTG-EPIEG 985
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.388
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,308,800
Number of extensions: 671512
Number of successful extensions: 1925
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1825
Number of HSP's successfully gapped: 86
Length of query: 635
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 536
Effective length of database: 3,937,614
Effective search space: 2110561104
Effective search space used: 2110561104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (26.9 bits)