RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15498
(635 letters)
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 204 bits (519), Expect = 2e-61
Identities = 195/266 (73%), Positives = 223/266 (83%)
Query: 269 QTTPPSIPVSQLYPDGNFPVGQEMEYPTLKDGRTGKDRFTNEEKKAIDRLHNDMYNEARQ 328
QT PPS+P+ LYP+G FP GQE EYP +DGRT R T+EEKKA+D+ +++N+ R+
Sbjct: 3 QTDPPSVPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFRE 62
Query: 329 AAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCAAH 388
AAEAHRQVRK++M WIKPGMTMIEI E+LE SR LI E+GL AGLAFPTGCS N+CAAH
Sbjct: 63 AAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAH 122
Query: 389 YTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAVRDATNTGIKAA 448
YTPN GD TVL++DDI KIDFGTHI+GRIIDCAFT+ +N KYD L++AV+DATNTGIK A
Sbjct: 123 YTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYDTLLKAVKDATNTGIKCA 182
Query: 449 GIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVPIVRGGE 508
GIDV LC+VG AIQEVMESYEVEIDGKTYQVK IRNLNGHSI YRIHAGKTVPIV+GGE
Sbjct: 183 GIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHSIGQYRIHAGKTVPIVKGGE 242
Query: 509 GTLMEENEFYAIETFGSTGKGMVHDD 534
T MEE E YAIETFGSTGKG+V
Sbjct: 243 ATRMEEGEVYAIETFGSTGKGVVDIK 268
Score = 116 bits (290), Expect = 2e-29
Identities = 90/130 (69%), Positives = 106/130 (81%)
Query: 106 NGNFPVGQEMEYPTLKDGRTGKDRFTNEEKKAIDRLHNDMYNEARQAAEAHRQVRKHMMG 165
NG FP GQE EYP +DGRT R T+EEKKA+D+ +++N+ R+AAEAHRQVRK++M
Sbjct: 17 NGVFPKGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMS 76
Query: 166 WIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCAAHYTPNNGDKTVLEFD 225
WIKPGMTMIEI E+LE SR LI E+GL AGLAFPTGCS N+CAAHYTPN GD TVL++D
Sbjct: 77 WIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTPNAGDTTVLQYD 136
Query: 226 DITKIDFGTH 235
DI KIDFGTH
Sbjct: 137 DICKIDFGTH 146
Score = 50.7 bits (120), Expect = 2e-07
Identities = 28/32 (87%), Positives = 31/32 (96%)
Query: 604 LCDIKGSYTAQFEHTIVLRPTCKEVISRGDDY 635
+ DIKGSYTAQFEHTI+LRPTCKEV+SRGDDY
Sbjct: 264 VVDIKGSYTAQFEHTILLRPTCKEVVSRGDDY 295
Score = 33.0 bits (74), Expect = 0.088
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 37 QTTPPSIPVSQLYPDD-----DEIEDGDVEDGAAEASKKKKRKKK 76
QT PPS+P+ LYP+ E E +DG A + +KK
Sbjct: 3 QTDPPSVPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKK 47
>d1b6aa1 a.4.5.25 (A:375-448) Methionine aminopeptidase, insert
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 122 bits (308), Expect = 3e-34
Identities = 51/74 (68%), Positives = 62/74 (83%)
Query: 532 HDDMDVSHYMKNFEASYIPLRLASSKSLLNTINKNFGTLAFCKRWLDRAGCTKYQMALKD 591
HDDM+ SHYMKNF+ ++P+RL +K LLN IN+NFGTLAFC+RWLDR G +KY MALK+
Sbjct: 1 HDDMECSHYMKNFDVGHVPIRLPRTKHLLNVINENFGTLAFCRRWLDRLGESKYLMALKN 60
Query: 592 LCDKGIVEAYPPLC 605
LCD GIV+ YPPLC
Sbjct: 61 LCDLGIVDPYPPLC 74
>d1xgsa1 a.4.5.25 (A:195-271) Methionine aminopeptidase, insert
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 77
Score = 93.6 bits (233), Expect = 5e-24
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 529 GMVHDDMDVSHYMKNFEASYIPLRLASSKSLLNTINKNFGTLAFCKRWL-DRAGCTKYQM 587
G V + YM + P+R+A ++ LL I + +GTL F RWL + + ++
Sbjct: 1 GQVIEVPPTLIYM--YVRDV-PVRVAQARFLLAKIKREYGTLPFAYRWLQNDMPEGQLKL 57
Query: 588 ALKDLCDKGIVEAYPPLCDI 607
ALK L G + YP L +I
Sbjct: 58 ALKTLEKAGAIYGYPVLKEI 77
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 84.6 bits (208), Expect = 8e-19
Identities = 35/214 (16%), Positives = 70/214 (32%), Gaps = 13/214 (6%)
Query: 327 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKY-SRLLIGEDGLKAGLAFPTGCSRNHC 385
R A +V + + ++KPG++ E+ Y +P +
Sbjct: 13 RVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISIN 72
Query: 386 AAHYTPNNGDKTVLEFDDITKIDFGTHINGRIID---CAFTLAYNNKYDKLIEAVRDATN 442
D +L+ DI ID +G D ++L +++
Sbjct: 73 EVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLY 132
Query: 443 TGIKAAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVP 502
++ + L E+GAAIQ+ +E+ + +R GH I + +
Sbjct: 133 LALRMVKPGINLREIGAAIQKFVEAEGFSV---------VREYCGHGIGRGFHEEPQVLH 183
Query: 503 IVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMD 536
+++ + IE + GK + D
Sbjct: 184 YDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKD 217
Score = 56.8 bits (136), Expect = 2e-09
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 150 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKY-SRLLIGEDGLKAGLAFPTGCSRNHC 208
R A +V + + ++KPG++ E+ Y +P +
Sbjct: 13 RVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISIN 72
Query: 209 AAHYTPNNGDKTVLEFDDITKIDFGTHING 238
D +L+ DI ID +G
Sbjct: 73 EVVCHGIPDDAKLLKDGDIVNIDVTVIKDG 102
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 66.6 bits (161), Expect = 7e-13
Identities = 41/213 (19%), Positives = 72/213 (33%), Gaps = 12/213 (5%)
Query: 327 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCA 386
++A +A + + I PG T ++ + + + L + K + +
Sbjct: 14 KKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGYKYATCVSVNE 73
Query: 387 AHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLA---YNNKYDKLIEAVRDATNT 443
+ V + DI +D G G D A T + + +L+ R+
Sbjct: 74 EVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKELVRVTREVLEK 133
Query: 444 GIKAAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVPI 503
IK + L +V IQE +ES + IR+ GH + +
Sbjct: 134 AIKMIKPGIRLGDVSHCIQETVESVGFNV---------IRDYVGHGVGRELHEDPQIPNY 184
Query: 504 VRGGEGTLMEENEFYAIETFGSTGKGMVHDDMD 536
G G ++ + AIE S G V D
Sbjct: 185 GTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKED 217
Score = 40.8 bits (94), Expect = 3e-04
Identities = 13/88 (14%), Positives = 29/88 (32%)
Query: 150 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCA 209
++A +A + + I PG T ++ + + + L + K + +
Sbjct: 14 KKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGYKYATCVSVNE 73
Query: 210 AHYTPNNGDKTVLEFDDITKIDFGTHIN 237
+ V + DI +D G
Sbjct: 74 EVVHGLPLKEKVFKEGDIVSVDVGAVYQ 101
Score = 27.3 bits (59), Expect = 5.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 607 IKGSYTAQFEHTIVLRPTCKEVISR 631
+ GS A FEHTI++ E++++
Sbjct: 224 VDGSRCAHFEHTILITENGAEILTK 248
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 65.9 bits (159), Expect = 8e-13
Identities = 64/202 (31%), Positives = 96/202 (47%), Gaps = 14/202 (6%)
Query: 327 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCA 386
+A E ++VR+ + +PGM ++E+ E +EK L G+ FP S N A
Sbjct: 7 MKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FPVNLSINEIA 60
Query: 387 AHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAVRDATNTGIK 446
AHYTP GD TVL+ D KID G HI+G I D A T+ + D+L+EA ++A N I
Sbjct: 61 AHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDELMEAAKEALNAAIS 120
Query: 447 AAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVPIVRG 506
A V + E+G AI+ + + K R I I+ R
Sbjct: 121 VARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIY--------RP 172
Query: 507 GEGTLMEENEFYAIETFGSTGK 528
+ +++E + +AIE F + G
Sbjct: 173 HDNYVLKEGDVFAIEPFATIGA 194
Score = 47.4 bits (111), Expect = 1e-06
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 150 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCA 209
+A E ++VR+ + +PGM ++E+ E +EK L G+ FP S N A
Sbjct: 7 MKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FPVNLSINEIA 60
Query: 210 AHYTPNNGDKTVLEFDDITKIDFGTHIN 237
AHYTP GD TVL+ D KID G HI+
Sbjct: 61 AHYTPYKGDTTVLKEGDYLKIDVGVHID 88
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 58.3 bits (139), Expect = 4e-10
Identities = 35/210 (16%), Positives = 62/210 (29%), Gaps = 5/210 (2%)
Query: 327 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCA 386
++ +VR M KPG+T E+ ++ FP +
Sbjct: 13 KEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNE 72
Query: 387 AHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAVRDATNTGIK 446
+ + E D+ ID NG D + D + + V D +
Sbjct: 73 EVAHGIPSKRVIRE-GDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFE 131
Query: 447 AAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVPIVRG 506
A V + I + + + + D K + S +
Sbjct: 132 NAIAKVKPGTKLSNIGKAVHNTARQNDLKVIK----NLTGHGVGLSLHEAPAHVLNYFDP 187
Query: 507 GEGTLMEENEFYAIETFGSTGKGMVHDDMD 536
+ TL+ E AIE F S+ V + +
Sbjct: 188 KDKTLLTEGMVLAIEPFISSNASFVTEGKN 217
Score = 47.9 bits (112), Expect = 1e-06
Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 1/89 (1%)
Query: 150 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCA 209
++ +VR M KPG+T E+ ++ FP +
Sbjct: 13 KEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNE 72
Query: 210 AHYTPNNGDKTVLEFDDITKIDFGTHING 238
+ + E D+ ID NG
Sbjct: 73 EVAHGIPSKRVIRE-GDLVNIDVSALKNG 100
Score = 27.5 bits (59), Expect = 4.8
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 609 GSYTAQFEHTIVLRPTCKEVISR 631
S+ AQ EHT+++ + ++
Sbjct: 226 KSFVAQIEHTVIVTKDGPILTTK 248
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 44.6 bits (104), Expect = 1e-05
Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 9/145 (6%)
Query: 327 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCA 386
+A E + + I G E+ ++E ++ E +
Sbjct: 10 EKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKP------AFDTIIASGHR 63
Query: 387 AHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAY---NNKYDKLIEAVRDATNT 443
+ +E D+ ID G N D T+ N K ++ E V +A
Sbjct: 64 SALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYEIVLEAQKR 123
Query: 444 GIKAAGIDVPLCEVGAAIQEVMESY 468
++AA + E+ + +E+++ Y
Sbjct: 124 AVEAAKPGMTAKELDSIAREIIKEY 148
Score = 34.2 bits (77), Expect = 0.032
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 150 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSR 185
+A E + + I G E+ ++E +
Sbjct: 10 EKACEIADKAVMAAIEEITEGKREREVAAKVEYLMK 45
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 40.8 bits (94), Expect = 3e-04
Identities = 27/214 (12%), Positives = 51/214 (23%), Gaps = 15/214 (7%)
Query: 327 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIG---EDGLKAGLAFPTGCSRN 383
R A ++ + + E+ + I ED N
Sbjct: 12 RHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMDTWTWFQSGIN 71
Query: 384 HCAAHYTPNNGDKTVLEFDDITKIDFGTHINGRIIDCAFTLAYNNKYDKLIEAVRDATNT 443
AH + DI ++ I G TL ++ D + +
Sbjct: 72 TDGAHNPVTT---RKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVEV 128
Query: 444 GIKAAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVPI 503
+ P +E+ E + + + S R +
Sbjct: 129 HEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSHYYGREAGLELRE- 187
Query: 504 VRGGEGTLMEENEFYAIE-----TFGSTGKGMVH 532
T++E ++E G G G
Sbjct: 188 ---DIDTVLEPGMVVSMEPMIMLPEGLPGAGGYR 218
Score = 40.4 bits (93), Expect = 3e-04
Identities = 9/70 (12%), Positives = 15/70 (21%), Gaps = 3/70 (4%)
Query: 150 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIG---EDGLKAGLAFPTGCSRN 206
R A ++ + + E+ + I ED N
Sbjct: 12 RHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMDTWTWFQSGIN 71
Query: 207 HCAAHYTPNN 216
AH
Sbjct: 72 TDGAHNPVTT 81
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 36.6 bits (83), Expect = 0.006
Identities = 20/89 (22%), Positives = 26/89 (29%), Gaps = 6/89 (6%)
Query: 150 RQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSRLLIGEDGLKAGLAFPTGCSRNHCA 209
R+A E M +PGM + E+ G N C
Sbjct: 9 RRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHE---FNRHGARYPSYNTIVGSGENGCI 65
Query: 210 AHYTPNNGDKTVLEFDDITKIDFGTHING 238
HYT N + D+ ID G G
Sbjct: 66 LHYTENECEMR---DGDLVLIDAGCEYKG 91
>d2c42a4 c.64.1.1 (A:416-668) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain III {Desulfovibrio africanus [TaxId: 873]}
Length = 253
Score = 30.4 bits (68), Expect = 0.58
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 274 SIPVSQLYPDGNFPVG 289
+PVS DG FP+G
Sbjct: 238 KLPVSAFEADGRFPLG 253
>d2dsrg1 g.28.1.1 (G:151-229) Insulin-like growth factor-binding
protein 4, IGFBP4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 26.1 bits (57), Expect = 3.5
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 573 CKRWLDRAGCTKYQMALKDLCDKGIVEAYPPLCDIKGSYTA-QFE 616
C+ L RA + + + P CD G++ Q
Sbjct: 3 CQSELHRALERLAAS--QSRTHEDLYIIPIPNCDRNGNFHPKQCH 45
>d1mrga_ d.165.1.1 (A:) alpha-Momorcharin (momordin) {Bitter gourd
(Momordica charantia) [TaxId: 3673]}
Length = 246
Score = 27.6 bits (61), Expect = 4.8
Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 7/113 (6%)
Query: 256 AATEEAPKNGIPQQTTPPSIPVSQLYPDGNFPVGQEMEY-----PTLKDGRTGKDRF-TN 309
A E A + ++P S Y G+ E P L + + +
Sbjct: 86 PAAELASQYVFRDARRKITLPYSGDYERLQIAAGKPREKIPIGLPALDSAISTLLHYDST 145
Query: 310 EEKKAIDRLHNDMYNEARQAAEAHRQVRKHMMGWIKPGMTMIEIVEELEKYSR 362
A+ L EA + +Q+++ P + I + S+
Sbjct: 146 AAAGALLVLIQ-TTAEAARFKYIEQQIQERAYRDEVPSLATISLENSWSGLSK 197
>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 473
Score = 27.6 bits (61), Expect = 5.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 51 DDDEIEDGDVEDGAAEASKKKKRKKKKKKAG 81
DD+ + D DGA A++K+ + K + G
Sbjct: 361 DDELGSEEDGFDGATAAARKEVIRNKIRAIG 391
>d1w27a_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Parsley
(Petroselinum crispum), PAL1 [TaxId: 4043]}
Length = 692
Score = 27.6 bits (61), Expect = 6.0
Identities = 12/60 (20%), Positives = 21/60 (35%)
Query: 445 IKAAGIDVPLCEVGAAIQEVMESYEVEIDGKTYQVKSIRNLNGHSIDSYRIHAGKTVPIV 504
I A+G VPL + + S V G + L G + + + + +V
Sbjct: 176 ITASGDLVPLSYIAGLLTGRPNSKAVGPTGVILSPEEAFKLAGVEGGFFELQPKEGLALV 235
>d1rmja_ g.28.1.1 (A:) Insulin-like growth factor binding protein 6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 25.7 bits (56), Expect = 9.0
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 573 CKRWLDRAGCTKYQMALKDLCDKGIVEAYPPLCDIKGSYTA 613
C+R LD L+ +G Y P CD +G Y
Sbjct: 30 CRRHLDSV-----LQQLQTEVYRGAQTLYVPNCDHRGFYRK 65
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.388
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,494,291
Number of extensions: 126453
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 33
Length of query: 635
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 544
Effective length of database: 1,158,166
Effective search space: 630042304
Effective search space used: 630042304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)