BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15499
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P70617|NINJ1_RAT Ninjurin-1 OS=Rattus norvegicus GN=Ninj1 PE=2 SV=1
Length = 152
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 72/116 (62%), Gaps = 15/116 (12%)
Query: 4 QKPIDVNRYATKKTIAQGMLDIALLTANASQLKYILQVGEKHEFYTLMLVLISTSIVLQV 63
+PI+VN YA KK+ A+ MLDIALL ANASQLK +++ G + F+ ++VLIS S+VLQ+
Sbjct: 33 NRPINVNHYANKKSAAESMLDIALLMANASQLKAVVEQGNEFAFFVPLVVLISISLVLQI 92
Query: 64 LMGVLFLSL------NLMRDCRLHLIEYKSSALIINHIAMGMSFAVTAINLLISAF 113
+GVL + L N + +L +N++A G+ F + +N+ I+AF
Sbjct: 93 GVGVLLIFLVKYDLNNPAKHAKLDF---------LNNLATGLVFIIVVVNIFITAF 139
>sp|Q92982|NINJ1_HUMAN Ninjurin-1 OS=Homo sapiens GN=NINJ1 PE=1 SV=2
Length = 152
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 15/114 (13%)
Query: 6 PIDVNRYATKKTIAQGMLDIALLTANASQLKYILQVGEKHEFYTLMLVLISTSIVLQVLM 65
PI+VN YA+KK+ A+ MLDIALL ANASQLK +++ G FY ++VLIS S+VLQ+ +
Sbjct: 35 PINVNHYASKKSAAESMLDIALLMANASQLKAVVEQGPSFAFYVPLVVLISISLVLQIGV 94
Query: 66 GVLFLSL------NLMRDCRLHLIEYKSSALIINHIAMGMSFAVTAINLLISAF 113
GVL + L N + +L +N++A G+ F + +N+ I+AF
Sbjct: 95 GVLLIFLVKYDLNNPAKHAKLDF---------LNNLATGLVFIIVVVNIFITAF 139
>sp|O70131|NINJ1_MOUSE Ninjurin-1 OS=Mus musculus GN=Ninj1 PE=2 SV=1
Length = 152
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 71/116 (61%), Gaps = 15/116 (12%)
Query: 4 QKPIDVNRYATKKTIAQGMLDIALLTANASQLKYILQVGEKHEFYTLMLVLISTSIVLQV 63
+PI+VN YA KK+ A+ MLDIALL ANASQLK +++ G F+ ++VLIS S+VLQ+
Sbjct: 33 NRPINVNHYANKKSAAESMLDIALLMANASQLKAVVEQGNDFAFFVPLVVLISISLVLQI 92
Query: 64 LMGVLFLSL------NLMRDCRLHLIEYKSSALIINHIAMGMSFAVTAINLLISAF 113
+GVL + L N + +L +N++A G+ F + +N+ I+AF
Sbjct: 93 GVGVLLIFLVKYDLNNPAKHAKLDF---------LNNLATGLVFIIVVVNIFITAF 139
>sp|Q9JHE8|NINJ2_RAT Ninjurin-2 OS=Rattus norvegicus GN=Ninj2 PE=2 SV=1
Length = 144
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 74/112 (66%), Gaps = 7/112 (6%)
Query: 4 QKPIDVNRYATKKTIAQGMLDIALLTANASQLKYILQVGEKHEFYTLMLVLISTSIVLQV 63
Q+ I++N YATKK++A+ MLD+AL +NA +LK +L+ G ++YT +L LIS S++LQV
Sbjct: 21 QRHINLNHYATKKSVAESMLDVALFMSNAMRLKSVLEQGPFSQYYTTLLTLISASLLLQV 80
Query: 64 LMGVLFLSLNLMRDCRLHLIEYKSSALI--INHIAMGMSFAVTAINLLISAF 113
++G+L + + RL+L E ++ + +N+ A + F IN+ I+AF
Sbjct: 81 VIGILLVVI-----ARLNLNEVENQWRLNQLNNAATTLVFITVVINIFITAF 127
>sp|Q9JL89|NINJ2_MOUSE Ninjurin-2 OS=Mus musculus GN=Ninj2 PE=2 SV=1
Length = 143
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 71/114 (62%), Gaps = 13/114 (11%)
Query: 5 KPIDVNRYATKKTIAQGMLDIALLTANASQLKYILQVGEKHEFYTLMLVLISTSIVLQVL 64
+ ID+N YATKK++A+ MLD+AL +NA +LK +LQ G E+YT ++ LI S++LQV+
Sbjct: 21 QRIDLNFYATKKSVAESMLDVALFMSNAMRLKSVLQQGPFAEYYTTLVTLIIVSLLLQVV 80
Query: 65 MGVLF-----LSLNLMRDCRLHLIEYKSSALIINHIAMGMSFAVTAINLLISAF 113
+ +L L+LN + + R HL + ++A I + F IN+ I+AF
Sbjct: 81 ISLLLVFIAILNLNEVENQR-HLNKLNNAATI-------LVFITVVINIFITAF 126
>sp|Q9NZG7|NINJ2_HUMAN Ninjurin-2 OS=Homo sapiens GN=NINJ2 PE=2 SV=1
Length = 142
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 72/111 (64%), Gaps = 7/111 (6%)
Query: 5 KPIDVNRYATKKTIAQGMLDIALLTANASQLKYILQVGEKHEFYTLMLVLISTSIVLQVL 64
+PI++N YATKK++A+ MLD+AL +NA +LK +L+ G +YT ++ LIS S++LQV+
Sbjct: 20 QPINLNHYATKKSVAESMLDVALFMSNAMRLKAVLEQGPSSHYYTTLVTLISLSLLLQVV 79
Query: 65 MGVLFLSLNLMRDCRLHLIEYKSSALI--INHIAMGMSFAVTAINLLISAF 113
+GVL + + RL+L E + + +N+ A + F IN+ I+AF
Sbjct: 80 IGVLLVVI-----ARLNLNEVEKQWRLNQLNNAATILVFFTVVINVFITAF 125
>sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase HRD1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=HRD1 PE=3 SV=2
Length = 575
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 42 GEKHEFYTLMLVLISTSIVLQVLMGVLFLSLNLMRDCR 79
G++H+ Y LML L ++L VL VL SLNL R
Sbjct: 175 GKRHDLY-LMLALSFAQLILDVLHVVLLTSLNLFEMVR 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,857,856
Number of Sequences: 539616
Number of extensions: 1488415
Number of successful extensions: 4329
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4316
Number of HSP's gapped (non-prelim): 12
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)