Query psy15499
Match_columns 151
No_of_seqs 108 out of 136
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 22:47:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04923 Ninjurin: Ninjurin ; 100.0 3.6E-46 7.9E-51 277.7 12.3 104 8-114 1-104 (104)
2 PRK09204 secY preprotein trans 49.8 40 0.00087 30.5 5.5 62 34-99 57-121 (426)
3 PTZ00219 Sec61 alpha subunit; 48.2 22 0.00047 32.8 3.6 41 54-100 86-126 (474)
4 PRK08568 preprotein translocas 42.9 35 0.00077 31.3 4.1 43 54-102 81-123 (462)
5 CHL00161 secY preprotein trans 41.9 72 0.0016 28.8 5.9 36 32-67 49-87 (417)
6 TIGR00967 3a0501s007 preprotei 40.0 50 0.0011 29.7 4.6 43 54-99 64-106 (410)
7 PRK12907 secY preprotein trans 39.1 41 0.00088 30.8 3.9 42 54-98 77-118 (434)
8 PF00344 SecY: SecY translocas 35.2 58 0.0013 28.3 4.1 39 54-98 10-48 (346)
9 COG0201 SecY Preprotein transl 35.1 88 0.0019 28.9 5.4 48 45-97 71-122 (436)
10 PF04835 Pox_A9: A9 protein co 34.0 1.2E+02 0.0025 20.7 4.5 35 40-74 14-48 (54)
11 PF12811 BaxI_1: Bax inhibitor 26.9 1.3E+02 0.0028 26.3 4.8 56 59-114 146-201 (274)
12 PF07423 DUF1510: Protein of u 25.8 70 0.0015 26.9 2.9 20 83-102 6-25 (217)
13 PF01737 Ycf9: YCF9; InterPro 25.5 2.3E+02 0.005 19.5 6.1 56 49-111 4-59 (59)
14 COG4194 Predicted membrane pro 22.6 3.6E+02 0.0077 24.6 6.8 68 46-114 169-241 (350)
15 cd00353 Ribosomal_S15p_S13e Ri 21.1 1.2E+02 0.0025 21.3 2.9 25 21-45 19-43 (80)
16 PF11146 DUF2905: Protein of u 20.8 61 0.0013 22.5 1.4 24 42-65 38-61 (64)
17 COG0184 RpsO Ribosomal protein 20.6 2.2E+02 0.0047 20.9 4.3 24 21-44 25-48 (89)
No 1
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=100.00 E-value=3.6e-46 Score=277.66 Aligned_cols=104 Identities=54% Similarity=0.782 Sum_probs=100.5
Q ss_pred CCccchhhHHHHHHHHHHHHHHhhHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHhhh
Q psy15499 8 DVNRYATKKTIAQGMLDIALLTANASQLKYILQVGEKHEFYTLMLVLISTSIVLQVLMGVLFLSLNLMRDCRLHLIEYKS 87 (151)
Q Consensus 8 d~N~YatKKTiAqgmLDIALLTANAnQLK~VL~~g~~~~~Y~~~l~LIsiSIvLQVlvGIlLi~~s~~~~~~~~~~~~~~ 87 (151)
|+|+|++|||+||||||+||||||||||||++|+|++|+||+++++||++||+||+++|++++++++ ++.+++++|+
T Consensus 1 ~~N~ya~kKtiaqgmlDiALltANasQLk~vl~~g~~~~~y~~~l~Li~iSlvLQv~vgilli~~~~---~n~~~~~~~~ 77 (104)
T PF04923_consen 1 NANRYATKKTIAQGMLDIALLTANASQLKYVLEVGPEHPFYYFLLTLISISLVLQVVVGILLIFISR---YNINKPEKQR 77 (104)
T ss_pred CccchhhhhHHHHHHHHHHHHHHhHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccccHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999875 6678888899
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhccC
Q psy15499 88 SALIINHIAMGMSFAVTAINLLISAFD 114 (151)
Q Consensus 88 ~~~~lNn~~~~~VfiItvINV~IsaFg 114 (151)
|++++|||+++++|+|+++||||++||
T Consensus 78 ~~~~lnn~~~~~v~ii~vvNv~Is~fg 104 (104)
T PF04923_consen 78 RANRLNNWATILVFIITVVNVFISAFG 104 (104)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcCC
Confidence 999999999999999999999999998
No 2
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=49.85 E-value=40 Score=30.53 Aligned_cols=62 Identities=16% Similarity=0.092 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCcchhHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhhcchHHhhhHHHHHHHHHHHH
Q psy15499 34 QLKYILQVGEKHEFYTLMLV---LISTSIVLQVLMGVLFLSLNLMRDCRLHLIEYKSSALIINHIAMGM 99 (151)
Q Consensus 34 QLK~VL~~g~~~~~Y~~~l~---LIsiSIvLQVlvGIlLi~~s~~~~~~~~~~~~~~~~~~lNn~~~~~ 99 (151)
++..++.-|.-.++-.+.+. -|..||++|++.++.--. .+.+.+.++.|+|.+..-.+.+.+
T Consensus 57 ~~~~~~~Gga~~~~slf~LGI~PyItAsIi~QLL~~~ip~l----~~l~kege~gr~k~~~~tr~ltl~ 121 (426)
T PRK09204 57 GLFNLFSGGALSRFSIFALGIMPYITASIIMQLLTVVIPKL----EELKKEGEAGRRKINQYTRYLTVV 121 (426)
T ss_pred HHHHHHcccchhcccHHHhCcHHHHHHHHHHHHHHHHhhhH----HHHhhccHhhHHHHHHHHHHHHHH
Confidence 44444444433333333332 478999999998843221 122223334455555554444443
No 3
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=48.18 E-value=22 Score=32.84 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchHHhhhHHHHHHHHHHHHH
Q psy15499 54 LISTSIVLQVLMGVLFLSLNLMRDCRLHLIEYKSSALIINHIAMGMS 100 (151)
Q Consensus 54 LIsiSIvLQVlvGIlLi~~s~~~~~~~~~~~~~~~~~~lNn~~~~~V 100 (151)
-|..||++|.++|.-++ +.+.+.+++|+|.++...+.++..
T Consensus 86 yItAsII~QLL~~~~l~------~~~~~~~~~r~k~~~~tr~lti~l 126 (474)
T PTZ00219 86 IVTSSMVMQLLAGSKII------DVDQNNKEDRALFEGAQKLLGLLI 126 (474)
T ss_pred HHHHHHHHHHHhhCCcc------cchhhhHHHHHHHHHHHHHHHHHH
Confidence 46899999999875322 122234455666666666655543
No 4
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=42.95 E-value=35 Score=31.28 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchHHhhhHHHHHHHHHHHHHHh
Q psy15499 54 LISTSIVLQVLMGVLFLSLNLMRDCRLHLIEYKSSALIINHIAMGMSFA 102 (151)
Q Consensus 54 LIsiSIvLQVlvGIlLi~~s~~~~~~~~~~~~~~~~~~lNn~~~~~Vfi 102 (151)
-|..||++|+++|.-++ . .|.+.++.|+|.++.-.+.+.++-+
T Consensus 81 yItAsII~QLL~~~~l~--~----l~~~~~~gr~k~~~~tr~lti~~a~ 123 (462)
T PRK08568 81 IVTAGIILQLLVGSKLI--N----LDLSDPEDRALFQGLQKLLAIVMIA 123 (462)
T ss_pred HHHHHHHHHHHhhCchh--e----eccCCHhhHHHHHHHHHHHHHHHHH
Confidence 36899999999876544 1 1234455566666666666554433
No 5
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=41.92 E-value=72 Score=28.79 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCCCcchhHHHHH---HHHHHHHHHHHHHH
Q psy15499 32 ASQLKYILQVGEKHEFYTLMLV---LISTSIVLQVLMGV 67 (151)
Q Consensus 32 AnQLK~VL~~g~~~~~Y~~~l~---LIsiSIvLQVlvGI 67 (151)
.-+++.++..|.-.++..+.+. -|..||++|++.++
T Consensus 49 ~~~~~~~~sgg~~~~~slf~LGI~PyItAsII~QLl~~~ 87 (417)
T CHL00161 49 LLNLLNTFSGGGFFVIGLFALGILPYINASIIIQLLTSI 87 (417)
T ss_pred HHHHHHHHcCCCcccCcHHHHCcHHHHHHHHHHHHHHHH
Confidence 4556666644433344444433 47899999999887
No 6
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=40.00 E-value=50 Score=29.67 Aligned_cols=43 Identities=19% Similarity=0.105 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchHHhhhHHHHHHHHHHHH
Q psy15499 54 LISTSIVLQVLMGVLFLSLNLMRDCRLHLIEYKSSALIINHIAMGM 99 (151)
Q Consensus 54 LIsiSIvLQVlvGIlLi~~s~~~~~~~~~~~~~~~~~~lNn~~~~~ 99 (151)
-|..||++|+++|...=.+.. ...+.++.|++.++.-.+.+.+
T Consensus 64 yItAsIi~QLL~~~~~~~l~~---~~~~g~~gr~k~~~~tr~lt~~ 106 (410)
T TIGR00967 64 YITASIIIQLLTGDVPPLLQL---QKKEGEIGRRKINQLTRYLTLI 106 (410)
T ss_pred HHHHHHHHHHHHhccChHHHH---HhhCChhhHHHHHHHHHHHHHH
Confidence 478999999998844322221 1111344455555555555443
No 7
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=39.12 E-value=41 Score=30.78 Aligned_cols=42 Identities=12% Similarity=-0.011 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchHHhhhHHHHHHHHHHH
Q psy15499 54 LISTSIVLQVLMGVLFLSLNLMRDCRLHLIEYKSSALIINHIAMG 98 (151)
Q Consensus 54 LIsiSIvLQVlvGIlLi~~s~~~~~~~~~~~~~~~~~~lNn~~~~ 98 (151)
-|..||++|++.+..+.-... .+.+.++.|+|.+..-.+.+.
T Consensus 77 yItAsII~QLL~~~~~p~l~~---l~kege~gr~k~~~~tR~ltl 118 (434)
T PRK12907 77 YITASIIVQLLQMDVIPKFSE---WAKQGEMGRKKSAQFTRYFTI 118 (434)
T ss_pred HHHHHHHHHHHHhccCccHHH---HhhcChhhHHHHHHHHHHHHH
Confidence 478999999998654432221 222234445555544444444
No 8
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=35.23 E-value=58 Score=28.30 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchHHhhhHHHHHHHHHHH
Q psy15499 54 LISTSIVLQVLMGVLFLSLNLMRDCRLHLIEYKSSALIINHIAMG 98 (151)
Q Consensus 54 LIsiSIvLQVlvGIlLi~~s~~~~~~~~~~~~~~~~~~lNn~~~~ 98 (151)
-+..||++|+++ .....+.+.+.++.+++.++...+.+.
T Consensus 10 yitAsIi~Qll~------~~~l~~l~~~g~~~~~~~~~~tr~ltl 48 (346)
T PF00344_consen 10 YITASIIMQLLI------IPKLIKLQKEGEEGRKKLNRYTRYLTL 48 (346)
T ss_dssp HHHHHHHHHHHH------SSSSSSHSTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh------cccHHHhhhcCcccHHHHHHHHHHHHH
Confidence 367899999981 122233333444555665555444443
No 9
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=35.10 E-value=88 Score=28.88 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=25.8
Q ss_pred cchhHHHHH---HHHHHHHHHHHH-HHHHHHHhhhhhhhcchHHhhhHHHHHHHHHH
Q psy15499 45 HEFYTLMLV---LISTSIVLQVLM-GVLFLSLNLMRDCRLHLIEYKSSALIINHIAM 97 (151)
Q Consensus 45 ~~~Y~~~l~---LIsiSIvLQVlv-GIlLi~~s~~~~~~~~~~~~~~~~~~lNn~~~ 97 (151)
.++-.+.+. -|+.||++|.+. +.=.+ ++.+.+.++.|+|.+..--+.+
T Consensus 71 ~~~SIfaLGI~PyITASII~QLL~~~~p~l-----~~l~k~~e~gR~k~~~~tRylt 122 (436)
T COG0201 71 SRGSIFALGIMPYITASIIMQLLTVGSPIL-----KKLDKEGEEGRRKIQQYTRYLT 122 (436)
T ss_pred ccchHHHHccHHHHHHHHHHHHHHHHHHHH-----HHHHhcChhhHHHHHHHHHHHH
Confidence 444444433 489999999994 43322 2233444555666544444333
No 10
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=33.96 E-value=1.2e+02 Score=20.72 Aligned_cols=35 Identities=6% Similarity=0.289 Sum_probs=27.5
Q ss_pred HhCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15499 40 QVGEKHEFYTLMLVLISTSIVLQVLMGVLFLSLNL 74 (151)
Q Consensus 40 ~~g~~~~~Y~~~l~LIsiSIvLQVlvGIlLi~~s~ 74 (151)
|..-....+.+.+.=+.+|+++=.+.|+.|++++.
T Consensus 14 e~k~R~NsF~fViik~vismimylilGi~L~yis~ 48 (54)
T PF04835_consen 14 ENKLRPNSFWFVIIKSVISMIMYLILGIALIYISS 48 (54)
T ss_pred HhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34444556778888899999999999999998753
No 11
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=26.93 E-value=1.3e+02 Score=26.29 Aligned_cols=56 Identities=21% Similarity=0.157 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcchHHhhhHHHHHHHHHHHHHHhhhhhhhhhhccC
Q psy15499 59 IVLQVLMGVLFLSLNLMRDCRLHLIEYKSSALIINHIAMGMSFAVTAINLLISAFD 114 (151)
Q Consensus 59 IvLQVlvGIlLi~~s~~~~~~~~~~~~~~~~~~lNn~~~~~VfiItvINV~IsaFg 114 (151)
|++|.+.|-+-++....--++...-+...|..+.=-.+++++++..++|.+.+-|+
T Consensus 146 Iv~qAvl~T~~vf~~ml~lYk~g~IrvT~kf~~iv~~a~~gi~~~~Lv~~vl~lf~ 201 (274)
T PF12811_consen 146 IVFQAVLGTFGVFAVMLALYKTGIIRVTPKFRRIVMIATFGIALFYLVNLVLSLFV 201 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCeeechHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66776666554432211111122222234566777888889999999999999883
No 12
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=25.76 E-value=70 Score=26.93 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=11.8
Q ss_pred HHhhhHHHHHHHHHHHHHHh
Q psy15499 83 IEYKSSALIINHIAMGMSFA 102 (151)
Q Consensus 83 ~~~~~~~~~lNn~~~~~Vfi 102 (151)
..++||.+++=|+++++|++
T Consensus 6 r~KrRK~N~iLNiaI~IV~l 25 (217)
T PF07423_consen 6 RQKRRKTNKILNIAIGIVSL 25 (217)
T ss_pred HHHhhhhhhhHHHHHHHHHH
Confidence 34566777666666665543
No 13
>PF01737 Ycf9: YCF9; InterPro: IPR002644 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents PsbZ (Ycf9), which is a core low molecular weight transmembrane protein of photosystem II in thylakoid-containing chloroplasts of cyanobacteria and plants. It is thought to be located at the interface of PSII and LHCII (light-harvesting complex II) complexes, the latter containing the light-harvesting antenna. PsbZ appears to act as a structural factor, or linker, that stabilises the PSII-LHCII supercomplexes, which fail to form in PsbZ-deficient mutants. This may in part be due to the marked decrease in two LHCII antenna proteins, CP26 and CP29, found in PsbZ-deficient mutants, which result in structural changes, as well as functional modifications in PSII []. PsbZ may also be involved in photo-protective processes under sub-optimal growth conditions.; GO: 0015979 photosynthesis, 0042549 photosystem II stabilization, 0009523 photosystem II, 0009539 photosystem II reaction center; PDB: 3A0B_Z 3ARC_Z 3A0H_Z 3PRQ_Z 4FBY_l 2AXT_z 3PRR_Z 3BZ1_Z 3KZI_Z 1S5L_Z ....
Probab=25.54 E-value=2.3e+02 Score=19.50 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHhhhHHHHHHHHHHHHHHhhhhhhhhhh
Q psy15499 49 TLMLVLISTSIVLQVLMGVLFLSLNLMRDCRLHLIEYKSSALIINHIAMGMSFAVTAINLLIS 111 (151)
Q Consensus 49 ~~~l~LIsiSIvLQVlvGIlLi~~s~~~~~~~~~~~~~~~~~~lNn~~~~~VfiItvINV~Is 111 (151)
.+...||.+|.+|=+.|=+.+ .+ -++++ +.|+..-..=-.=+++||++.+.|-|++
T Consensus 4 l~v~aLi~~Sf~LVVgVPV~~--As-p~~W~----~sK~~i~~g~~lW~~LV~lvgilnsfV~ 59 (59)
T PF01737_consen 4 LAVFALIALSFLLVVGVPVVF--AS-PDGWS----SSKNLIFSGAGLWIGLVFLVGILNSFVV 59 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HS-TSCCC----CHHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhh--cC-Ccchh----hhccchhhHHHHHHHHHHHHHhHhhhcC
Confidence 356778888888866665554 22 11121 1122222223334668999999998763
No 14
>COG4194 Predicted membrane protein [General function prediction only]
Probab=22.59 E-value=3.6e+02 Score=24.63 Aligned_cols=68 Identities=22% Similarity=0.159 Sum_probs=36.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hcchHH--hhhHHHHHHHHHHHHHHhhhhhhhhhhccC
Q psy15499 46 EFYTLMLVLISTSIVLQVLMGVLFLSLNLMRDC---RLHLIE--YKSSALIINHIAMGMSFAVTAINLLISAFD 114 (151)
Q Consensus 46 ~~Y~~~l~LIsiSIvLQVlvGIlLi~~s~~~~~---~~~~~~--~~~~~~~lNn~~~~~VfiItvINV~IsaFg 114 (151)
++-.+.+.++.. +++-++.|+..+...+.+.. +-++.. .++.-+..|+++..+-++..+.+-.+++|-
T Consensus 169 p~s~~~lpi~~~-ivl~~l~~i~~lit~~s~~l~~~~pddS~~r~~rfr~~~~~~~~ivg~fm~~lf~i~~~~i 241 (350)
T COG4194 169 PMSFLSLPIIGL-IVLALLLGISALITRQSNVLASRNPDDSAIRAARFREFLNIIALIVGWFMFSLFAIISAMI 241 (350)
T ss_pred cHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444 66666666666554332211 112221 223345788888777677777777777654
No 15
>cd00353 Ribosomal_S15p_S13e Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix.
Probab=21.07 E-value=1.2e+02 Score=21.33 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHhCCCc
Q psy15499 21 GMLDIALLTANASQLKYILQVGEKH 45 (151)
Q Consensus 21 gmLDIALLTANAnQLK~VL~~g~~~ 45 (151)
.-.+||+||+.+..|+.=++..+..
T Consensus 19 ~evQia~LT~rI~~L~~Hl~~~~KD 43 (80)
T cd00353 19 PEVQLALLTERIVNLTEHLEKNKKD 43 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccc
Confidence 4578999999999999999988764
No 16
>PF11146 DUF2905: Protein of unknown function (DUF2905); InterPro: IPR021320 This is a family of bacterial proteins conserved of unknown function.
Probab=20.82 E-value=61 Score=22.49 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=19.4
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHH
Q psy15499 42 GEKHEFYTLMLVLISTSIVLQVLM 65 (151)
Q Consensus 42 g~~~~~Y~~~l~LIsiSIvLQVlv 65 (151)
+++..||.+..+.|.+|+++-++.
T Consensus 38 ~~~~~fyfPi~s~illS~vlslll 61 (64)
T PF11146_consen 38 RGNFTFYFPITSSILLSVVLSLLL 61 (64)
T ss_pred ECCEEEEEehHHHHHHHHHHHHHH
Confidence 345789999999999999886653
No 17
>COG0184 RpsO Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]
Probab=20.64 E-value=2.2e+02 Score=20.93 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHhCCC
Q psy15499 21 GMLDIALLTANASQLKYILQVGEK 44 (151)
Q Consensus 21 gmLDIALLTANAnQLK~VL~~g~~ 44 (151)
+-.|+|+||+-+++|+-=++..++
T Consensus 25 ~evq~a~Lt~ri~~L~~Hlk~hkK 48 (89)
T COG0184 25 GEVQLALLTERINNLTEHLKEHKK 48 (89)
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCc
Confidence 368999999999999999999876
Done!