Query psy15499
Match_columns 151
No_of_seqs 108 out of 136
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 22:47:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15499.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15499hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rh5_A Preprotein translocase 45.7 18 0.00061 31.8 3.9 39 54-98 78-116 (436)
2 3j01_A Preprotein translocase 37.5 33 0.0011 30.0 4.3 41 54-98 78-118 (435)
3 2ww9_A SEC sixty-one protein h 33.1 29 0.001 30.9 3.3 39 54-98 87-125 (490)
4 3arc_Z Photosystem II reaction 29.8 1.2E+02 0.0042 20.0 7.5 56 49-111 7-62 (62)
5 2zjs_Y Preprotein translocase 29.3 88 0.003 27.4 5.6 12 54-65 80-91 (434)
6 3mp7_A Preprotein translocase 28.8 16 0.00056 32.5 0.9 39 54-98 81-119 (482)
7 3din_C Preprotein translocase 28.7 49 0.0017 28.9 3.9 42 53-98 84-125 (431)
8 2kci_A Putative acyl carrier p 26.3 52 0.0018 22.2 3.0 36 104-139 6-41 (87)
9 3dl8_G Preprotein translocase 26.0 62 0.0021 28.2 4.1 42 53-98 79-121 (429)
10 2kjs_A Putative acyl carrier p 21.3 65 0.0022 21.5 2.6 35 105-139 7-41 (87)
No 1
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=45.72 E-value=18 Score=31.78 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchHHhhhHHHHHHHHHHH
Q psy15499 54 LISTSIVLQVLMGVLFLSLNLMRDCRLHLIEYKSSALIINHIAMG 98 (151)
Q Consensus 54 LIsiSIvLQVlvGIlLi~~s~~~~~~~~~~~~~~~~~~lNn~~~~ 98 (151)
-|+.||++|.++|.-++ +.+.+.++.|+|.+..-.+.+.
T Consensus 78 yItAsII~QLL~g~~~i------~l~kege~gr~ki~~~tR~lti 116 (436)
T 1rh5_A 78 IVTAGIIMQLLVGSGII------QMDLSIPENRALFQGCQKLLSI 116 (436)
T ss_dssp HHHHHHHHHHHHHHTTS------CCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcee------eecccCHHHHHHHHHHHHHHHH
Confidence 48899999999876443 1233445556665544444433
No 2
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=37.55 E-value=33 Score=30.05 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchHHhhhHHHHHHHHHHH
Q psy15499 54 LISTSIVLQVLMGVLFLSLNLMRDCRLHLIEYKSSALIINHIAMG 98 (151)
Q Consensus 54 LIsiSIvLQVlvGIlLi~~s~~~~~~~~~~~~~~~~~~lNn~~~~ 98 (151)
-|+.||++|.+.++. ....+.+.+.++.|+|.+..-.+.+.
T Consensus 78 yItAsII~QLL~~~i----p~l~~l~kege~gr~ki~~~tR~lti 118 (435)
T 3j01_A 78 YISASIIIQLLTVVH----PTLAEIKKEGESGRRKISQYTRYGTL 118 (435)
T ss_dssp HHHHHHHHHHHHHHC----SSSSSCSCCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----ccHHHhhhccHHHHHHHHHHHHHHHH
Confidence 478999999999851 12222333344455555544444433
No 3
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=33.13 E-value=29 Score=30.88 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchHHhhhHHHHHHHHHHH
Q psy15499 54 LISTSIVLQVLMGVLFLSLNLMRDCRLHLIEYKSSALIINHIAMG 98 (151)
Q Consensus 54 LIsiSIvLQVlvGIlLi~~s~~~~~~~~~~~~~~~~~~lNn~~~~ 98 (151)
-|+.||++|.++|.-++= .+.+.++.|+|.+..-.+.++
T Consensus 87 yItASII~QLL~g~~iip------l~kege~gR~k~~~~tR~lti 125 (490)
T 2ww9_A 87 NISSGLILQLLAGLKVIK------VNFKIQSDRELFQSLTKVFAI 125 (490)
T ss_dssp HHHHHHHHHHHHHHTSSC------CCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccc------ccccCHHHHHHHHHHHHHHHH
Confidence 388999999998853321 223345556665544444443
No 4
>3arc_Z Photosystem II reaction center protein Z; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_Z* 3a0b_Z* 3a0h_Z* 2axt_Z* 3bz1_Z* 3bz2_Z* 3kzi_Z* 3prq_Z* 3prr_Z*
Probab=29.81 E-value=1.2e+02 Score=20.05 Aligned_cols=56 Identities=14% Similarity=0.215 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHhhhHHHHHHHHHHHHHHhhhhhhhhhh
Q psy15499 49 TLMLVLISTSIVLQVLMGVLFLSLNLMRDCRLHLIEYKSSALIINHIAMGMSFAVTAINLLIS 111 (151)
Q Consensus 49 ~~~l~LIsiSIvLQVlvGIlLi~~s~~~~~~~~~~~~~~~~~~lNn~~~~~VfiItvINV~Is 111 (151)
.+...||.+|.+|=+-|=+.+ .+- +++ .+.++..-..=-.=+++||++.++|-|+.
T Consensus 7 l~v~aLi~~Sf~LVVgVPV~~--Asp-~~W----~~sK~~v~~g~~lW~~LV~lvgilnsfv~ 62 (62)
T 3arc_Z 7 LALAALVILSFVMVIGVPVAY--ASP-QDW----DRSKQLIFLGSGLWIALVLVVGVLNFFVV 62 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HCS-SCH----HHHHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred HHHHHHHHHHHHHHheeeeEE--ECC-cch----hhhhceeeeHHHHHHHHHHHHHHHHhhcC
Confidence 456778888887755555443 221 111 11222222333344678999999998863
No 5
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=29.26 E-value=88 Score=27.37 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHH
Q psy15499 54 LISTSIVLQVLM 65 (151)
Q Consensus 54 LIsiSIvLQVlv 65 (151)
-|+.||++|.+.
T Consensus 80 yItASII~QLL~ 91 (434)
T 2zjs_Y 80 YITAAIIMQILV 91 (434)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 488999999993
No 6
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=28.78 E-value=16 Score=32.47 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchHHhhhHHHHHHHHHHH
Q psy15499 54 LISTSIVLQVLMGVLFLSLNLMRDCRLHLIEYKSSALIINHIAMG 98 (151)
Q Consensus 54 LIsiSIvLQVlvGIlLi~~s~~~~~~~~~~~~~~~~~~lNn~~~~ 98 (151)
-|+.||++|.+.|.-+. +.+.+.++.|+|.+..-.+.+.
T Consensus 81 yITASII~QLL~~~~l~------~l~kege~gR~k~~~~tR~lti 119 (482)
T 3mp7_A 81 IVTAGIILQLLVGSEII------KLDLANPEDRRFYQALQRVFSV 119 (482)
T ss_dssp HHHHHHHTTC-----------------------------CHHHHH
T ss_pred HHHHHHHHHHHHhccHH------HHhhcCHHHHHHHHHHHHHHHH
Confidence 47899999999996222 2233344555555444444333
No 7
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=28.72 E-value=49 Score=28.93 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHhhhHHHHHHHHHHH
Q psy15499 53 VLISTSIVLQVLMGVLFLSLNLMRDCRLHLIEYKSSALIINHIAMG 98 (151)
Q Consensus 53 ~LIsiSIvLQVlvGIlLi~~s~~~~~~~~~~~~~~~~~~lNn~~~~ 98 (151)
=-|+.||++|.+.++. -...+.+.+.++.|+|.+..-.+.+.
T Consensus 84 PyItAsII~QLL~~~i----P~l~~l~kege~gr~ki~~~tR~lti 125 (431)
T 3din_C 84 PYITASIILQLLASVM----PSLKEMLREGEEGRKKFAKYTRRLTL 125 (431)
T ss_dssp HHHHHHHHHHHHHHHS----CSSSSCSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh----hhHHHhcccchhhHHHHHHHHHHHHH
Confidence 3588999999998852 11122333344455665544444443
No 8
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2lml_A* 2kwm_A*
Probab=26.26 E-value=52 Score=22.21 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=29.7
Q ss_pred hhhhhhhhccCCCCCCCCCCCcCCCCCCccchhhhh
Q psy15499 104 TAINLLISAFDPGLGRFVPPTSLLDSPSISSLDSVA 139 (151)
Q Consensus 104 tvINV~IsaFg~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (151)
.+..++...||.+....-|.+++-|.+.+.|+|-+.
T Consensus 6 kv~~il~e~l~~d~~~i~~d~~l~~dlg~DSL~~ve 41 (87)
T 2kci_A 6 ALTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMN 41 (87)
T ss_dssp HHHHHHHHHTTCSCCCCCTTCCSTTCCCCCSTHHHH
T ss_pred HHHHHHHHHhCCCHHHCCCCCCcccccCCChHHHHH
Confidence 456788888999888887888888889999998764
No 9
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=26.01 E-value=62 Score=28.23 Aligned_cols=42 Identities=14% Similarity=-0.038 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhc-chHHhhhHHHHHHHHHHH
Q psy15499 53 VLISTSIVLQVLMGVLFLSLNLMRDCRL-HLIEYKSSALIINHIAMG 98 (151)
Q Consensus 53 ~LIsiSIvLQVlvGIlLi~~s~~~~~~~-~~~~~~~~~~~lNn~~~~ 98 (151)
=-|+.||++|.+.++. =+ ..+.+. +.++.|+|.+..-.+.+.
T Consensus 79 PyItAsII~QLL~~~~---P~-l~~l~k~ege~gr~ki~~~tR~lti 121 (429)
T 3dl8_G 79 PYISASIMMQLLTVAI---PS-LQRLAKEEGDYGRYKINEYTKYLTL 121 (429)
T ss_dssp HHHHHHHHHHHHHHHS---SC-SSSCSCSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---hh-HHHhhhccCHHHHHHHHHHHHHHHH
Confidence 3588999999999852 11 222333 334455555444444433
No 10
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=21.35 E-value=65 Score=21.53 Aligned_cols=35 Identities=20% Similarity=0.130 Sum_probs=29.4
Q ss_pred hhhhhhhccCCCCCCCCCCCcCCCCCCccchhhhh
Q psy15499 105 AINLLISAFDPGLGRFVPPTSLLDSPSISSLDSVA 139 (151)
Q Consensus 105 vINV~IsaFg~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (151)
+..||--.|+++....-|.+++.|-+.+.||+.+-
T Consensus 7 l~~I~~e~l~~d~~~i~~~~~~~d~lg~DSL~~ve 41 (87)
T 2kjs_A 7 LTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMN 41 (87)
T ss_dssp HHHHHHHHHTCSSCCCCTTCCSTTCSCCCHHHHHH
T ss_pred HHHHHHHHhCCCccccCCCCCcccCCCCChHHHHH
Confidence 45678888999999988999999989988888764
Done!