Query psy15499
Match_columns 151
No_of_seqs 108 out of 136
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 22:47:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15499.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15499hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5a_ f.41.1.1 (A:) Preprote 51.0 9.1 0.00067 31.0 4.9 42 54-101 77-118 (422)
2 d1y5ic1 f.21.3.1 (C:1-225) Res 16.1 1.5E+02 0.011 20.9 5.9 95 16-115 48-148 (225)
3 d1q90b_ f.21.1.2 (B:) Cytochro 13.8 80 0.0058 23.2 3.8 27 45-71 27-53 (212)
4 d1ppjc2 f.21.1.2 (C:15-260) Mi 13.6 64 0.0047 24.1 3.2 26 46-71 14-39 (246)
5 d1oedb_ f.36.1.1 (B:) Acetylch 12.8 72 0.0053 22.3 3.2 21 45-65 65-85 (250)
6 d1oedc_ f.36.1.1 (C:) Acetylch 12.2 75 0.0055 22.2 3.1 42 24-65 36-85 (260)
7 d3cx5c2 f.21.1.2 (C:1-261) Mit 11.2 94 0.0069 23.4 3.6 27 45-71 26-52 (261)
8 d1dv5a_ a.28.1.3 (A:) apo-D-al 10.0 1E+02 0.0073 18.3 2.8 34 105-138 9-42 (80)
9 d2axtz1 f.17.5.1 (Z:1-62) Phot 9.5 2E+02 0.015 17.5 7.2 54 49-110 7-61 (62)
10 d2af8a_ a.28.1.1 (A:) Actinorh 7.4 67 0.0049 19.6 1.0 31 102-136 45-75 (86)
No 1
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=50.98 E-value=9.1 Score=31.03 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchHHhhhHHHHHHHHHHHHHH
Q psy15499 54 LISTSIVLQVLMGVLFLSLNLMRDCRLHLIEYKSSALIINHIAMGMSF 101 (151)
Q Consensus 54 LIsiSIvLQVlvGIlLi~~s~~~~~~~~~~~~~~~~~~lNn~~~~~Vf 101 (151)
-|..||++|++++-- ..+.+.+.+|.|++.+..-.+.+.+.-
T Consensus 77 yItASIImQLL~~~~------l~~~~~~~~~gr~k~~~~tr~ltl~la 118 (422)
T d1rh5a_ 77 IVTAGIIMQLLVGSG------IIQMDLSIPENRALFQGCQKLLSIIMC 118 (422)
T ss_dssp HHHHHHHHHHHHHHT------TSCCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh------HHHhhhcchhHHHHHHHHHHHHHHHHH
Confidence 578999999997532 223444556666665555555554433
No 2
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=16.09 E-value=1.5e+02 Score=20.95 Aligned_cols=95 Identities=14% Similarity=0.136 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH------hCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHhhhHH
Q psy15499 16 KTIAQGMLDIALLTANASQLKYILQ------VGEKHEFYTLMLVLISTSIVLQVLMGVLFLSLNLMRDCRLHLIEYKSSA 89 (151)
Q Consensus 16 KTiAqgmLDIALLTANAnQLK~VL~------~g~~~~~Y~~~l~LIsiSIvLQVlvGIlLi~~s~~~~~~~~~~~~~~~~ 89 (151)
..++-+++-..++..=.-.+...+. .+-..+.|+.......--..+-+++|++..+.++.. +++.+..-
T Consensus 48 l~~~~~lfH~gi~~~f~gh~~g~l~~~~~~~~~~~~~~~~~~~~~~g~i~g~l~liG~~~ll~RR~~-----~~~~r~~~ 122 (225)
T d1y5ic1 48 MNLASNLFHIGILGIFVGHFFGMLTPHWMYEAWLPIEVAQKMAMFAGGASGVLCLIGGVLLLKRRLF-----SPRVRATT 122 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----SHHHHHHC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCcccccC
Confidence 3456666666655433222222221 122233344333333333344556677766655422 11211111
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhccCC
Q psy15499 90 LIINHIAMGMSFAVTAINLLISAFDP 115 (151)
Q Consensus 90 ~~lNn~~~~~VfiItvINV~IsaFg~ 115 (151)
..-..+...+.+++++.-....++.+
T Consensus 123 ~~~d~~~L~ll~~i~~tG~~~~~~~~ 148 (225)
T d1y5ic1 123 TGADILILSLLVIQCALGLLTIPFSA 148 (225)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12334444555555555555444443
No 3
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=13.84 E-value=80 Score=23.21 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=22.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15499 45 HEFYTLMLVLISTSIVLQVLMGVLFLS 71 (151)
Q Consensus 45 ~~~Y~~~l~LIsiSIvLQVlvGIlLi~ 71 (151)
..+++..=.+..+++++|++.|++|.+
T Consensus 27 ~~~~~~~Gsll~~~~~iqi~TGi~L~~ 53 (212)
T d1q90b_ 27 VNIFYCIGGITFTCFLVQVATGFAMTF 53 (212)
T ss_dssp CCSGGGHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788999999999999999865
No 4
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.58 E-value=64 Score=24.07 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=21.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15499 46 EFYTLMLVLISTSIVLQVLMGVLFLS 71 (151)
Q Consensus 46 ~~Y~~~l~LIsiSIvLQVlvGIlLi~ 71 (151)
.+++..=.+..+++++|++.|++|..
T Consensus 14 ~~~w~~G~ll~~~~~iqiiTGi~L~~ 39 (246)
T d1ppjc2 14 SSWWNFGSLLGICLILQILTGLFLAM 39 (246)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566678889999999999999875
No 5
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=12.80 E-value=72 Score=22.34 Aligned_cols=21 Identities=19% Similarity=0.611 Sum_probs=18.5
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q psy15499 45 HEFYTLMLVLISTSIVLQVLM 65 (151)
Q Consensus 45 ~~~Y~~~l~LIsiSIvLQVlv 65 (151)
..||..+++++++|++.-+++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~v 85 (250)
T d1oedb_ 65 IRYLMFIMILVAFSVILSVVV 85 (250)
T ss_dssp CTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 678999999999999988776
No 6
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=12.17 E-value=75 Score=22.20 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=26.7
Q ss_pred HHHHHHhhHHHHHHHHHhCC-------C-cchhHHHHHHHHHHHHHHHHH
Q psy15499 24 DIALLTANASQLKYILQVGE-------K-HEFYTLMLVLISTSIVLQVLM 65 (151)
Q Consensus 24 DIALLTANAnQLK~VL~~g~-------~-~~~Y~~~l~LIsiSIvLQVlv 65 (151)
-++.|-|-+-.+-.+-+.=| - ..||.++++++++|++.=++|
T Consensus 36 ~it~lLs~~vf~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s~~~t~~V 85 (260)
T d1oedc_ 36 AISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIVNCGIV 85 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444555555544322 1 578889999999999877765
No 7
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.20 E-value=94 Score=23.44 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=22.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15499 45 HEFYTLMLVLISTSIVLQVLMGVLFLS 71 (151)
Q Consensus 45 ~~~Y~~~l~LIsiSIvLQVlvGIlLi~ 71 (151)
-.+++..=.++.+++++|++.|++|.+
T Consensus 26 in~~w~~G~ll~~~~~iqiiTGi~L~~ 52 (261)
T d3cx5c2 26 INYWWNMGSLLGLCLVIQIVTGIFMAM 52 (261)
T ss_dssp CCGGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566678889999999999999865
No 8
>d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]}
Probab=10.04 E-value=1e+02 Score=18.31 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=23.6
Q ss_pred hhhhhhhccCCCCCCCCCCCcCCCCCCccchhhh
Q psy15499 105 AINLLISAFDPGLGRFVPPTSLLDSPSISSLDSV 138 (151)
Q Consensus 105 vINV~IsaFg~~~~~~~~~~~~~~~~~~~~~~~~ 138 (151)
++.++--.+|.+...+-|.+++.|.-.+.|++.+
T Consensus 9 v~~il~~~l~~~~~~i~~d~~l~e~gglDSl~~v 42 (80)
T d1dv5a_ 9 VLDILADLTGSDDVKKNLDLNLFETGLLDSMGTV 42 (80)
T ss_dssp HHHHHHHHHTSSSTTTCSSCCSSTTSSCCSHHHH
T ss_pred HHHHHHHHhccchhhcCCCccccccCCCCHHHHH
Confidence 4555566677777777777888777766666654
No 9
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.51 E-value=2e+02 Score=17.46 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHhhhHHHH-HHHHHHHHHHhhhhhhhhh
Q psy15499 49 TLMLVLISTSIVLQVLMGVLFLSLNLMRDCRLHLIEYKSSALI-INHIAMGMSFAVTAINLLI 110 (151)
Q Consensus 49 ~~~l~LIsiSIvLQVlvGIlLi~~s~~~~~~~~~~~~~~~~~~-lNn~~~~~VfiItvINV~I 110 (151)
..+..||.+|.+|=+-|=+. +-+- +++ ++.++.-. ---.-+++||++-+.|-|+
T Consensus 7 l~v~ALi~~SF~lVVgVPV~--~ASP-~gW-----~~sK~lvfsG~~~W~~LV~lvgilNsfV 61 (62)
T d2axtz1 7 LALAALVILSFVMVIGVPVA--YASP-QDW-----DRSKQLIFLGSGLWIALVLVVGVLNFFV 61 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHCC-TTT-----THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHheeceEE--EECC-Ccc-----cccCceEEEchhHHHHHHHHHHhhheee
Confidence 45677888888775554444 3221 111 11111111 1223367899999999876
No 10
>d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]}
Probab=7.40 E-value=67 Score=19.57 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=23.7
Q ss_pred hhhhhhhhhhccCCCCCCCCCCCcCCCCCCccchh
Q psy15499 102 AVTAINLLISAFDPGLGRFVPPTSLLDSPSISSLD 136 (151)
Q Consensus 102 iItvINV~IsaFg~~~~~~~~~~~~~~~~~~~~~~ 136 (151)
.+-+++=+=..||++ +|+.-+.+.|++..+-
T Consensus 45 ~~~l~~~l~~~~g~~----l~~~~~~~~~Tv~~l~ 75 (86)
T d2af8a_ 45 LMETAARLESRYGVS----IPDDVAGRVDTPRELL 75 (86)
T ss_dssp HHHHHHHHHHHHTCC----CCCSTTTTCCCHHHHH
T ss_pred HHHHHHHHHHHHccC----cCHHHHHcCCCHHHHH
Confidence 345566666788888 7899999999987763
Done!