RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15499
         (151 letters)



>gnl|CDD|191128 pfam04923, Ninjurin, Ninjurin.  Ninjurin (nerve injury-induced
           protein) is involved in nerve regeneration and in the
           formation and function in some tissues.
          Length = 100

 Score =  116 bits (292), Expect = 1e-34
 Identities = 57/107 (53%), Positives = 77/107 (71%), Gaps = 7/107 (6%)

Query: 8   DVNRYATKKTIAQGMLDIALLTANASQLKYILQVGEKHEFYTLMLVLISTSIVLQVLMGV 67
           D+NRYATKKT+AQGMLDIALLTANASQLKY+L+VGE+H FY  +L L+S SIVLQV++G+
Sbjct: 1   DLNRYATKKTVAQGMLDIALLTANASQLKYLLEVGEEHSFYYFLLTLLSISIVLQVVVGI 60

Query: 68  LFLSLNLMRDCRLHLIEYKSSALIINHIAMGMSFAVTAINLLISAFD 114
           L L ++ +   +            +N+ A  + F +T +N+LISAF 
Sbjct: 61  LLLLISRLNINKRKAD-------RLNNAATILVFLITVVNVLISAFG 100


>gnl|CDD|225795 COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion
           transport and metabolism].
          Length = 717

 Score = 27.8 bits (62), Expect = 2.6
 Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 12/112 (10%)

Query: 19  AQGMLDIALLTANASQLKYILQVGEKHEFYTLMLVLISTSIVLQVLMGVLFLSLNLMRDC 78
             GML +A++     +L+ I +  +K         L++  +VL   + +L   +      
Sbjct: 604 VYGMLALAMMLYALRELRPIGEAPDKLL--RWAFWLMNGGLVLMTAISLLPAGVVQAWLS 661

Query: 79  RLHLIEYKSSALIINH----------IAMGMSFAVTAINLLISAFDPGLGRF 120
             H   Y  S                I   + FA+ AI  LI     G G F
Sbjct: 662 ITHGYWYARSPEFAVQDQLALFVWLRIGGDVVFAIGAIVFLIYVLRGGKGAF 713


>gnl|CDD|223941 COG1009, NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain
           L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy
           production and conversion / Inorganic ion transport and
           metabolism].
          Length = 606

 Score = 27.6 bits (62), Expect = 2.9
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 7/45 (15%)

Query: 89  ALIINHIAMGMSFAVTAINLLISAF-------DPGLGRFVPPTSL 126
            L I+ +++ M+  VT +  LI  +       DPGLGRF     L
Sbjct: 69  GLRIDGLSLLMALLVTGVGFLIHLYSIGYMSHDPGLGRFFAYLLL 113


>gnl|CDD|218468 pfam05152, DUF705, Protein of unknown function (DUF705).  This
          family contains several uncharacterized Baculovirus
          proteins.
          Length = 297

 Score = 27.2 bits (61), Expect = 3.4
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 27 LLTANASQLKYIL-QVGEKHEFYTLMLVLISTSIVLQVLMGVLFLSLNLMRDCRLHL-IE 84
          L  A  + LKY+  +  E  E Y +       SI        +F   + MRD R +L   
Sbjct: 18 LFVAEYADLKYLSFRHLEYFE-YVVFKFDNDRSIDTSNYKMQVFKCKDDMRDIRKYLKTA 76

Query: 85 YKSSAL----IINH-IAM 97
          +K+S L    ++N    M
Sbjct: 77 FKTSYLGHVFVLNEKPPM 94


>gnl|CDD|218861 pfam06027, DUF914, Eukaryotic protein of unknown function (DUF914).
            This family consists of several hypothetical proteins
           of unknown function. Some of the sequences in this
           family are annotated as being putative membrane
           proteins.
          Length = 336

 Score = 27.4 bits (61), Expect = 3.6
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 13/67 (19%)

Query: 47  FYTLMLVLISTSIVLQVLMGVL---FLSLNLMRDCRLHLIEYKSSALIINHIAMGMSFAV 103
            Y+LM +LI  +      + +L   F SL       + L  YK S L        ++FA 
Sbjct: 247 LYSLMPILIKKTSATMFNLSLLTSDFWSLL----IGIFLFHYKVSWLYF------LAFAT 296

Query: 104 TAINLLI 110
             I L+I
Sbjct: 297 IIIGLII 303


>gnl|CDD|177150 MTH00083, COX3, cytochrome c oxidase subunit III; Provisional.
          Length = 256

 Score = 26.8 bits (60), Expect = 3.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 61  LQVLMGVLFLSLNLMRDCRLHLIEYKSSAL 90
           + VL G LFL  NL+R  + H        L
Sbjct: 201 IHVLCGGLFLLFNLLRLLKSHFNYNHHLGL 230


>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
          Length = 523

 Score = 26.4 bits (59), Expect = 7.6
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 18/69 (26%)

Query: 77  DCRLH-LIEYKSSALIINHIAMGMSFAVTAINLLISAFDPGL-------GR----FVPPT 124
           D  LH L  Y  + L    + +G    V A N+++ A DP L        R    F PPT
Sbjct: 213 DIPLHALPLYHCAQL---DVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPT 269

Query: 125 ---SLLDSP 130
              SLL  P
Sbjct: 270 VWISLLRHP 278


>gnl|CDD|135765 PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydrogenase;
           Validated.
          Length = 255

 Score = 26.0 bits (57), Expect = 9.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 85  YKSSALIINHIAMGMSFAVTAINLLISAFDPG 116
           Y SS    +H+   M+F +   N+ ++   PG
Sbjct: 159 YASSKAAASHLVRNMAFDLGEKNIRVNGIAPG 190


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.136    0.373 

Gapped
Lambda     K      H
   0.267   0.0698    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,283,844
Number of extensions: 648882
Number of successful extensions: 680
Number of sequences better than 10.0: 1
Number of HSP's gapped: 675
Number of HSP's successfully gapped: 42
Length of query: 151
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 63
Effective length of database: 7,034,450
Effective search space: 443170350
Effective search space used: 443170350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)