RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15499
         (151 letters)



>3rj1_B Mediator of RNA polymerase II transcription subun; RNA polymeras
           II, POL II, head module, head, regulator, helical
           bundle; 4.30A {Saccharomyces cerevisiae}
          Length = 583

 Score = 26.0 bits (56), Expect = 6.2
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 10/43 (23%)

Query: 94  HIAMG-MSFAVTAINLLISA---------FDPGLGRFVPPTSL 126
           ++AM   S A+  ++LL+S+           P L + V P+SL
Sbjct: 115 NLAMNESSLALEFVSLLLSSVKESTGMSSMSPFLRKVVKPSSL 157


>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome,
           protein EXIT tunnel, cotranslational protein
           translocation, protein conducting channel; 6.48A {Canis
           lupus familiaris}
          Length = 476

 Score = 25.3 bits (55), Expect = 9.3
 Identities = 9/70 (12%), Positives = 26/70 (37%)

Query: 55  ISTSIVLQVLMGVLFLSLNLMRDCRLHLIEYKSSALIINHIAMGMSFAVTAINLLISAFD 114
           +++ +++Q+L G   + +      R      +    +I  I   + + +T +    S   
Sbjct: 85  VTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMG 144

Query: 115 PGLGRFVPPT 124
            G+   +   
Sbjct: 145 AGICLLITIQ 154


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.136    0.373 

Gapped
Lambda     K      H
   0.267   0.0454    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,053,589
Number of extensions: 109476
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 9
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)