RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15499
         (151 letters)



>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056
          {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 194

 Score = 24.4 bits (53), Expect = 6.5
 Identities = 6/25 (24%), Positives = 14/25 (56%)

Query: 59 IVLQVLMGVLFLSLNLMRDCRLHLI 83
          ++ +     LF+S  + RD  ++L+
Sbjct: 29 VLCRCTSQALFISHGIRRDVEVYLL 53


>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059
          {Vibrio cholerae [TaxId: 666]}
          Length = 201

 Score = 24.0 bits (52), Expect = 7.9
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 59 IVLQVLMGVLFLSLNLMRDCRLHLI 83
          I+   +M  LF + +   D  +HL+
Sbjct: 30 ILAHCMMNSLFTAQSHREDVVIHLV 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.373 

Gapped
Lambda     K      H
   0.267   0.0650    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 469,835
Number of extensions: 18083
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 6
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.8 bits)