BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1550
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54797|T10_MOUSE Ser/Thr-rich protein T10 in DGCR region OS=Mus musculus GN=T10 PE=2
SV=1
Length = 276
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 119/239 (49%), Gaps = 36/239 (15%)
Query: 24 QDAVKGGTWLATSTNGKLGILLNVLGENSRPNGRDRGPLVVKYVEGQKSAEEYLTDLKKE 83
++ GGTWL ST GKLG L N L P+ R RG LV ++ + YL K
Sbjct: 53 EEGKAGGTWLGISTRGKLGALTNYLQPRQEPDARGRGELVSHFLTSDMDSLSYLK--KVS 110
Query: 84 TEENVFNGFHIVLLELTLQSTNIYHFSNIAPLDSPSTKVTNVTNKQENKDHV-----YGF 138
TE +++NGF+I+ +L+ ++ V N+ E + V YG
Sbjct: 111 TEGHLYNGFNIIAADLSTSKGDV---------------VCYYGNRGEPEPIVLTPGTYGL 155
Query: 139 GNSQCTSQPFQKVIFGKEKFAEIVNKFNRKSESQNLIQNILDLMKNKQSNYPDPEIDRKA 198
N+ + P++K+ FGK+ F E V + + L+ +LD++ N+++ PDP I+
Sbjct: 156 SNALLET-PWKKLCFGKQLFMEAVEQ-SEALPKDVLVTQLLDVLNNEEAQLPDPAIE--- 210
Query: 199 EADMDEDYKM----RYSRVCVDISSIFYGTRTHSIILVDHNNVMDFHEWT-LDYETKKW 252
D ++Y +Y+ V +S YGTRT++IILVD N + F E + LD +T +W
Sbjct: 211 --DQGQEYVQPILNKYAAVWCRCAS--YGTRTNTIILVDANGHVTFTERSMLDKDTSRW 265
>sp|Q29RZ5|TNG2_BOVIN Transport and Golgi organization 2 homolog OS=Bos taurus GN=TANGO2
PE=2 SV=1
Length = 276
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 113/235 (48%), Gaps = 28/235 (11%)
Query: 24 QDAVKGGTWLATSTNGKLGILLNVLGENSRPNGRDRGPLVVKYVEGQKSAEEYLTDLKKE 83
++ +GGTWL ST GKL L N L N R RG LV +++ + YL K
Sbjct: 53 EEGKEGGTWLGISTRGKLAALTNYLQPRLNRNARGRGELVAQFLTSDMDSLSYLK--KVS 110
Query: 84 TEENVFNGFHIVLLELTLQSTNIYHFSNIAPLDSPSTKVTNVTNKQENKDHV-----YGF 138
E +++NGF+++ +L+ + ++ + N+ E + V YG
Sbjct: 111 AEGHLYNGFNLIAADLSAEKGDV---------------ICYYGNRGEREPVVLAPGTYGL 155
Query: 139 GNSQCTSQPFQKVIFGKEKFAEIVNKFNRKSESQNLIQNILDLMKNKQSNYPDPEIDRKA 198
N+ + P++K+ FGK+ F E V + R+ L+ +L ++ N ++ PDP I+ +
Sbjct: 156 SNALLET-PWRKLCFGKQLFLEAVER-GRELPRDALVAQLLAVLSNDEAQLPDPAIEAQG 213
Query: 199 EADMDEDYKMRYSRVCVDISSIFYGTRTHSIILVDHNNVMDFHEWT-LDYETKKW 252
+ +Y+ VCV YGTRT ++ILVD + + F E + L + +W
Sbjct: 214 R-EYVRPILSKYAAVCVRCPD--YGTRTSTVILVDADGHVTFTERSMLGSDPTRW 265
>sp|Q6ICL3|TNG2_HUMAN Transport and Golgi organization 2 homolog OS=Homo sapiens
GN=TANGO2 PE=2 SV=1
Length = 276
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 116/235 (49%), Gaps = 28/235 (11%)
Query: 24 QDAVKGGTWLATSTNGKLGILLNVLGENSRPNGRDRGPLVVKYVEGQKSAEEYLTDLKKE 83
++ +GGTWL ST GKL L N L R RG LV ++ + YL K
Sbjct: 53 EEGKEGGTWLGISTRGKLAALTNYLQPQLDWQARGRGELVTHFLTTDVDSLSYLK--KVS 110
Query: 84 TEENVFNGFHIVLLEL-TLQSTNIYHFSNIAPLD----SPSTKVTNVTNKQENKDHVYGF 138
E +++NGF+++ +L T + I ++ N D +P T YG
Sbjct: 111 MEGHLYNGFNLIAADLSTAKGDVICYYGNRGEPDPIVLTPGT---------------YGL 155
Query: 139 GNSQCTSQPFQKVIFGKEKFAEIVNKFNRKSESQNLIQNILDLMKNKQSNYPDPEIDRKA 198
N+ + P++K+ FGK+ F E V + ++ LI ++LD++ N+++ PDP I+ +
Sbjct: 156 SNALLET-PWRKLCFGKQLFLEAVER-SQALPKDVLIASLLDVLNNEEAQLPDPAIEDQG 213
Query: 199 EADMDEDYKMRYSRVCVDISSIFYGTRTHSIILVDHNNVMDFHEWT-LDYETKKW 252
+ + +Y+ VCV YGTRT++IILVD + + F E + +D + W
Sbjct: 214 -GEYVQPMLSKYAAVCVRCPG--YGTRTNTIILVDADGHVTFTERSMMDKDLSHW 265
>sp|Q9VYA8|TNG2_DROME Transport and Golgi organization 2 OS=Drosophila melanogaster
GN=Tango2 PE=2 SV=2
Length = 283
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 117/242 (48%), Gaps = 30/242 (12%)
Query: 28 KGGTWLATSTNG---KLGILLNVLGENSRPNGRDRGPLVVKYV---EGQKSAEEYLTDLK 81
+GGTWLA + K+G LLN+ GE + RG +V YV + + S Y L
Sbjct: 56 EGGTWLAIGHSAGFFKVGALLNLTGEPKPRDAVGRGMIVADYVTRADEEHSILNYNERLL 115
Query: 82 KETEENVFNGFHIVLLEL--TLQSTNIYHFSNIAPLDSPSTKVTNVTNKQENKDHVYGFG 139
K+ + ++ F+ V +E+ Q + SN+ P T + YGFG
Sbjct: 116 KDCTK--YSAFNFVSIEIGSASQPARVKLLSNVPP-----------TLEDFQNGECYGFG 162
Query: 140 NSQCTSQPFQKVIFGKEKFAEIVNKFNRKSESQNLIQNILDLMKNKQSNYPDPEIDRKAE 199
NS S PF+KV GK++F IV K + ++ + L ++ L++NK +PD E+ +A
Sbjct: 163 NSLPHS-PFEKVRHGKQEFEAIV-KAHGEASVETLSAQLMQLLRNKHKFWPDDELKTRAP 220
Query: 200 ADMDEDYKMRYSRVCVDISSIFYGTRTHSIILVDHNNVMDFHEWTLDY--ETKKWIHTHI 257
++ S + V I YG+RTHS++LVD N M F E T+ +W THI
Sbjct: 221 -----NWGEGLSSLNVHIEEHAYGSRTHSVVLVDSENKMHFIEETMTGLDPHGEWNKTHI 275
Query: 258 RK 259
K
Sbjct: 276 EK 277
>sp|Q929Q1|GLMM_LISIN Phosphoglucosamine mutase OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=glmM PE=3 SV=1
Length = 450
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 53 RPNGRDRGPLVVKYVEGQKSAEEYLTDLKKETEENVFNGFHIVL 96
RP+G G V Y EG++ +YL K+T EN FNG+HI L
Sbjct: 141 RPSGEGLGT-VSDYFEGKQKYIQYL----KQTIENDFNGYHIAL 179
>sp|A0AKM3|GLMM_LISW6 Phosphoglucosamine mutase OS=Listeria welshimeri serovar 6b (strain
ATCC 35897 / DSM 20650 / SLCC5334) GN=glmM PE=3 SV=1
Length = 450
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 53 RPNGRDRGPLVVKYVEGQKSAEEYLTDLKKETEENVFNGFHIVL 96
RP+G G V Y EG++ +YL K+T EN FNG+HI L
Sbjct: 141 RPSGEGLGT-VSDYFEGKQKYIQYL----KQTIENDFNGYHIAL 179
>sp|Q8Y5E6|GLMM_LISMO Phosphoglucosamine mutase OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=glmM PE=3 SV=1
Length = 450
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 53 RPNGRDRGPLVVKYVEGQKSAEEYLTDLKKETEENVFNGFHIVL 96
RP+G G V Y EG++ +YL K+T EN FNG+HI L
Sbjct: 141 RPSGEGLGT-VSDYFEGKQKYIQYL----KQTIENDFNGYHIAL 179
>sp|Q71XP5|GLMM_LISMF Phosphoglucosamine mutase OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=glmM PE=3 SV=1
Length = 450
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 53 RPNGRDRGPLVVKYVEGQKSAEEYLTDLKKETEENVFNGFHIVL 96
RP+G G V Y EG++ +YL K+T EN FNG+HI L
Sbjct: 141 RPSGEGLGT-VSDYFEGKQKYIQYL----KQTIENDFNGYHIAL 179
>sp|Q7NZD4|QUEA_CHRVO S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OS=Chromobacterium violaceum (strain ATCC 12472 / DSM
30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
GN=queA PE=3 SV=1
Length = 340
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 144 TSQPFQKVIFGKEKFAEIVNKFNRKSESQNLIQ-NILDLMKNKQSNYPDPEIDRKAEADM 202
+ +P ++IF AE+V + + + + L + N+ D+++ P I+R AE D
Sbjct: 98 SPKPGSRLIFAGRWEAEMVERHDSMFKLRFLAEENVYDILEASGKLPLPPYIERSAEHDD 157
Query: 203 DEDYKMRYSR 212
DE Y+ Y+R
Sbjct: 158 DERYQTVYAR 167
>sp|Q0TPM8|Y1979_CLOP1 UPF0348 protein CPF_1979 OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=CPF_1979 PE=3 SV=1
Length = 402
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 57 RDRGPLVVKYVEGQKSAEEYLTDLKKETEENVFNGFHIV----LLELTLQSTNIYHFSNI 112
R P V+ + E L ++KK +E N+ N LLE +++TNIY F N
Sbjct: 327 RKSSPNYVRILGFNNKGREILKEIKKNSEINIVNKLSKAKSDSLLEFDIKATNIYSFLN- 385
Query: 113 APLDSPSTKV 122
PS K+
Sbjct: 386 -----PSVKI 390
>sp|Q8XJN0|Y1726_CLOPE UPF0348 protein CPE1726 OS=Clostridium perfringens (strain 13 /
Type A) GN=CPE1726 PE=3 SV=2
Length = 402
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 57 RDRGPLVVKYVEGQKSAEEYLTDLKKETEENVFNGFHIV----LLELTLQSTNIYHFSNI 112
R P V+ + E L ++KK +E N+ N LLE +++TNIY F N
Sbjct: 327 RKSSPNYVRILGFNNKGREILKEIKKNSEINIVNKLSKAKADPLLEFDIKATNIYSFLN- 385
Query: 113 APLDSPSTKV 122
PS K+
Sbjct: 386 -----PSVKI 390
>sp|Q0SS95|Y1697_CLOPS UPF0348 protein CPR_1697 OS=Clostridium perfringens (strain SM101 /
Type A) GN=CPR_1697 PE=3 SV=1
Length = 402
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 57 RDRGPLVVKYVEGQKSAEEYLTDLKKETEENVFNGFHIV----LLELTLQSTNIYHFSNI 112
R P V+ + E L ++KK +E N+ N LLE +++TNIY F N
Sbjct: 327 RKYSPNYVRILGFNNKGREILKEIKKNSEINIVNKLSKAKTDPLLEFDIKATNIYSFLN- 385
Query: 113 APLDSPSTKV 122
PS K+
Sbjct: 386 -----PSVKI 390
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,944,294
Number of Sequences: 539616
Number of extensions: 4230237
Number of successful extensions: 9422
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 9408
Number of HSP's gapped (non-prelim): 24
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)