Query psy1550
Match_columns 264
No_of_seqs 136 out of 604
Neff 6.9
Searched_HMMs 13730
Date Fri Aug 16 22:50:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1550.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1550hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q98a_ c.47.1.10 (A:) Thiol p 26.8 23 0.0017 25.9 3.4 26 221-246 124-149 (164)
2 d1psqa_ c.47.1.10 (A:) Probabl 21.8 33 0.0024 24.9 3.4 25 222-246 122-146 (163)
3 d1qxha_ c.47.1.10 (A:) Thiol p 19.8 37 0.0027 24.6 3.3 25 222-246 127-151 (164)
4 d1ri9a_ b.34.2.1 (A:) Fyn-bind 10.8 78 0.0057 20.6 2.5 19 28-46 54-72 (77)
5 d1xvqa_ c.47.1.10 (A:) Thiol p 10.5 94 0.0068 22.2 3.3 18 228-245 130-147 (166)
6 d2hu7a1 b.69.7.2 (A:9-321) Acy 10.3 66 0.0048 25.9 2.4 21 28-48 238-258 (313)
7 d1zzoa1 c.47.1.10 (A:45-178) L 10.1 70 0.0051 21.6 2.3 20 222-241 97-117 (134)
8 d1xb2b2 d.43.1.1 (B:112-222) E 9.4 48 0.0035 22.8 1.1 26 21-50 1-26 (111)
9 d2bmxa1 c.47.1.10 (A:2-170) Al 9.4 94 0.0068 22.1 2.9 21 222-244 129-149 (169)
10 d2imha1 d.153.1.7 (A:1-229) Hy 9.0 3.9E+02 0.028 20.4 8.6 99 60-184 52-150 (229)
No 1
>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}
Probab=26.81 E-value=23 Score=25.94 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=20.6
Q ss_pred CCccceeEEEEEeeCCeEEEEEEEec
Q psy1550 221 FYGTRTHSIILVDHNNVMDFHEWTLD 246 (264)
Q Consensus 221 ~YGTRssTvIlvd~~g~v~f~Er~~~ 246 (264)
.+|.-+-++.+||++|+|.|.|+.-+
T Consensus 124 ~~g~~~Ra~fvID~~G~I~y~~~~~~ 149 (164)
T d1q98a_ 124 LAGLTSRAVIVLDEQNNVLHSQLVEE 149 (164)
T ss_dssp TTTSBCCEEEEECTTSBEEEEEECSB
T ss_pred cccCcccEEEEECCCCEEEEEEECCC
Confidence 46655557899999999999998654
No 2
>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}
Probab=21.75 E-value=33 Score=24.91 Aligned_cols=25 Identities=12% Similarity=0.412 Sum_probs=18.6
Q ss_pred CccceeEEEEEeeCCeEEEEEEEec
Q psy1550 222 YGTRTHSIILVDHNNVMDFHEWTLD 246 (264)
Q Consensus 222 YGTRssTvIlvd~~g~v~f~Er~~~ 246 (264)
||.-..++++||++|.|.|.++.-+
T Consensus 122 ~~~~~Ra~fvID~~G~I~y~~~~~~ 146 (163)
T d1psqa_ 122 WHLLARAVFVLDTDNTIRYVEYVDN 146 (163)
T ss_dssp TCSBCCEEEEECTTCBEEEEEECSB
T ss_pred ccceeEEEEEECCCCEEEEEEEcCC
Confidence 4433335799999999999988544
No 3
>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}
Probab=19.79 E-value=37 Score=24.65 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=18.7
Q ss_pred CccceeEEEEEeeCCeEEEEEEEec
Q psy1550 222 YGTRTHSIILVDHNNVMDFHEWTLD 246 (264)
Q Consensus 222 YGTRssTvIlvd~~g~v~f~Er~~~ 246 (264)
+|.-+-++++||++|+|.|.++.-+
T Consensus 127 ~g~~~ra~fvID~~G~I~y~~~~~~ 151 (164)
T d1qxha_ 127 KGLAARAVVVIDENDNVIFSQLVDE 151 (164)
T ss_dssp TTSBCCEEEEECTTSBEEEEEECSB
T ss_pred cCcccCEEEEEcCCCEEEEEEEcCC
Confidence 4543446799999999999887543
No 4
>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.78 E-value=78 Score=20.63 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=16.9
Q ss_pred CCccEEEecCCCcEEEEeC
Q psy1550 28 KGGTWLATSTNGKLGILLN 46 (264)
Q Consensus 28 ~GGTWLGi~~~Gr~a~LtN 46 (264)
..|-||+=|..|+++-+..
T Consensus 54 ~~~k~LcRN~~GkYGYV~~ 72 (77)
T d1ri9a_ 54 DDTKVLCRNEEGKYGYVLR 72 (77)
T ss_dssp SSSEEEEEETTTEEEEEEG
T ss_pred CCCeEEEEcCCCcEEEEEe
Confidence 5799999999999998865
No 5
>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.52 E-value=94 Score=22.20 Aligned_cols=18 Identities=11% Similarity=0.362 Sum_probs=15.4
Q ss_pred EEEEEeeCCeEEEEEEEe
Q psy1550 228 SIILVDHNNVMDFHEWTL 245 (264)
Q Consensus 228 TvIlvd~~g~v~f~Er~~ 245 (264)
++++||++|+|.|.+..-
T Consensus 130 a~fvID~~G~I~y~~~~~ 147 (166)
T d1xvqa_ 130 AIVVIGADGNVAYTELVP 147 (166)
T ss_dssp EEEEECTTSBEEEEEECS
T ss_pred EEEEEeCCCEEEEEEEcC
Confidence 579999999999988754
No 6
>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}
Probab=10.30 E-value=66 Score=25.86 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=16.7
Q ss_pred CCccEEEecCCCcEEEEeCCC
Q psy1550 28 KGGTWLATSTNGKLGILLNVL 48 (264)
Q Consensus 28 ~GGTWLGi~~~Gr~a~LtN~~ 48 (264)
--=||||.+.++|+|++.-..
T Consensus 238 ~~I~~~~Y~Pdd~L~iiakrd 258 (313)
T d2hu7a1 238 TAITWLGYLPDGRLAVVARRE 258 (313)
T ss_dssp SEEEEEEECTTSCEEEEEEET
T ss_pred eEEEeeeeCCCCcEEEEEecC
Confidence 345899999999998887643
No 7
>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.06 E-value=70 Score=21.63 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=13.9
Q ss_pred Ccccee-EEEEEeeCCeEEEE
Q psy1550 222 YGTRTH-SIILVDHNNVMDFH 241 (264)
Q Consensus 222 YGTRss-TvIlvd~~g~v~f~ 241 (264)
||-++- +.++||++|++.++
T Consensus 97 ~~v~~~P~~~iiD~~G~i~~~ 117 (134)
T d1zzoa1 97 FGVTQQPAYAFVDPHGNVDVV 117 (134)
T ss_dssp TTCCSSSEEEEECTTCCEEEE
T ss_pred cCCCccCeEEEECCCCeEEEE
Confidence 444432 67889999998764
No 8
>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=9.40 E-value=48 Score=22.81 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=19.3
Q ss_pred eccCCCCCCccEEEecCCCcEEEEeCCCCC
Q psy1550 21 EVSQDAVKGGTWLATSTNGKLGILLNVLGE 50 (264)
Q Consensus 21 grD~~~~~GGTWLGi~~~Gr~a~LtN~~~~ 50 (264)
||+.. +| ++++..+|+.|+|+=....
T Consensus 1 GR~a~--EG--~I~i~~~~~~~~ivElNcE 26 (111)
T d1xb2b2 1 GRKTK--EG--LIGLLQEGDTTVLVEVNCE 26 (111)
T ss_dssp TSCCC--EE--EEEEEEETTEEEEEEEEES
T ss_pred Ccccc--cc--EEEEEeCCCeEEEEEEecc
Confidence 56655 44 8999999999999876554
No 9
>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.39 E-value=94 Score=22.15 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=16.6
Q ss_pred CccceeEEEEEeeCCeEEEEEEE
Q psy1550 222 YGTRTHSIILVDHNNVMDFHEWT 244 (264)
Q Consensus 222 YGTRssTvIlvd~~g~v~f~Er~ 244 (264)
+..| +.++||++|+|.+++..
T Consensus 129 ~~~r--~~fvID~~G~I~~~~~~ 149 (169)
T d2bmxa1 129 VADR--VTFIVDPNNEIQFVSAT 149 (169)
T ss_dssp SBCE--EEEEECTTSBEEEEEEE
T ss_pred ccce--eEEEEcCCCEEEEEEEc
Confidence 4455 46889999999999874
No 10
>d2imha1 d.153.1.7 (A:1-229) Hypothetical protein SPO2555 {Silicibacter pomeroyi [TaxId: 89184]}
Probab=8.99 E-value=3.9e+02 Score=20.40 Aligned_cols=99 Identities=11% Similarity=0.114 Sum_probs=57.2
Q ss_pred chHHHHhhcCCCCHHHHHHHHHhcccCCcccceEEEEEeccCCceeEEEEeCCCCCCCCCccccccccccccCCcEEEEc
Q psy1550 60 GPLVVKYVEGQKSAEEYLTDLKKETEENVFNGFHIVLLELTLQSTNIYHFSNIAPLDSPSTKVTNVTNKQENKDHVYGFG 139 (264)
Q Consensus 60 G~Lv~~fL~~~~s~~~y~~~l~~~~~~~~y~gFnLv~gd~~~~~~~l~~~~N~~~~~~~~~~~~~~~~~~~l~~g~~glS 139 (264)
|....+.|+...+|++-++.+........|.-+ -+.|...+ ...++...-.... -....+++-+..
T Consensus 52 g~~~l~~l~~G~s~~~al~~l~~~D~~~~~RQ~--~vvD~~G~---~A~~TG~~~~~~~---------gh~~g~~~~~aG 117 (229)
T d2imha1 52 GEEVLQHLRDGSHPEDAVNHVTSQDSGRAYRQL--AAMDLLGN---AAAFTGSENQDIK---------GSVTFASGIASG 117 (229)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTCTTGGGCEE--EEEETTSC---EEEEECTTSCSSC---------EEEEETTEEEEE
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCccceeE--EEEcCCCC---EEEEECccchhhh---------hccccCCeEEEe
Confidence 888999999999999999998875444234444 44566543 3444444322011 133456777788
Q ss_pred CCCCCCCchhhhHhHHHHHHHHHHhccCCcchHHHHHHHHHhhcc
Q psy1550 140 NSQCTSQPFQKVIFGKEKFAEIVNKFNRKSESQNLIQNILDLMKN 184 (264)
Q Consensus 140 N~~l~d~pwpKv~~gk~~~~~~~~~~~~~~~~~~li~~L~~lL~d 184 (264)
|-+. +.. | .+.|.+..... .-.|.++|+..|.-
T Consensus 118 N~L~-~~~---V---l~aM~~aF~~~-----~g~LaeRLl~AL~A 150 (229)
T d2imha1 118 NMLG-DNS---V---LGAMTEAFVAS-----DLTFERRLLAALIA 150 (229)
T ss_dssp ESCS-CTH---H---HHHHHHHHHHC-----CSCHHHHHHHHHHH
T ss_pred ccCC-Ccc---H---HHHHHHHHHhc-----CCCHHHHHHHHHHH
Confidence 8887 421 1 11222222221 13466888887755
Done!