RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1550
         (264 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 38.7 bits (89), Expect = 0.002
 Identities = 40/253 (15%), Positives = 81/253 (32%), Gaps = 64/253 (25%)

Query: 57  RDRGPLVVKYVEGQKSAEEYLTDL-----KKETEENVFNGFHIVLLELTLQ--STNIYHF 109
           R +   V  ++    +    L          E +  +         +L  +  +TN    
Sbjct: 273 RFKQ--VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 110 SNIAPL--DSPST----------KVT-------NVTNKQENKDHVYGFG----NSQCTSQ 146
           S IA    D  +T          K+T       NV    E +           ++   + 
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 147 PFQKVIFGKEKFAE---IVNKFNRKSESQNLIQNILDLMKNKQSNYPDPEIDRKAEADMD 203
               +I+     ++   +VNK ++ S    L++      + K+S    P I  + +  ++
Sbjct: 391 LLS-LIWFDVIKSDVMVVVNKLHKYS----LVEK-----QPKESTISIPSIYLELKVKLE 440

Query: 204 EDYKM------RYS-RVCVDISSI--------FYGTRTHSIILVDHNNVMD-FHEWTLDY 247
            +Y +       Y+     D   +        FY    H +  ++H   M  F    LD+
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500

Query: 248 ETKKWIHTHIRKT 260
              +++   IR  
Sbjct: 501 ---RFLEQKIRHD 510



 Score = 27.5 bits (60), Expect = 5.4
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 6/49 (12%)

Query: 65  KYV-EGQKSAEEYLTDLKK---ETEENVFNGFHIVLLELTLQSTN--IY 107
            Y+ +     E  +  +     + EEN+    +  LL + L + +  I+
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.3 bits (73), Expect = 0.16
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 18/59 (30%)

Query: 143  CTSQPFQKVI--FGKE--KFAEIVNKFNRKSESQ-----------NLIQNILDLMKNKQ 186
             + +  Q V+   GK      EIVN +N   E+Q           + + N+L+ +K ++
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVN-YN--VENQQYVAAGDLRALDTVTNVLNFIKLQK 1876



 Score = 29.6 bits (66), Expect = 1.2
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 69  GQKSAEEYLTDLKK--ETE----ENVFNGFHIVLLELTLQSTNI-YHFS---NIAP-LDS 117
           GQ + ++Y  +L+   +T      ++       L EL   + +    F+   NI   L++
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221

Query: 118 PSTK 121
           PS  
Sbjct: 222 PSNT 225


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl RED
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 1688

 Score = 27.5 bits (61), Expect = 5.7
 Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 21/88 (23%)

Query: 34   ATSTNGKLGILLNVLGENSRPNGRDR-GPLVVKYVEGQKSA----EEYLTDLKKETEENV 88
            ATS   +         E SRP    R G     ++E Q +      +    LK       
Sbjct: 1149 ATSNTLEEFEHGRTPAEMSRPATTTRNG-----FMEAQGAGIQIIMQADLALKM------ 1197

Query: 89   FNGFHIVLLELTLQSTN--IYHFSNIAP 114
              G  I    + + +T       S  AP
Sbjct: 1198 --GVPI-YGIVAMAATATDKIGRSVPAP 1222


>2oar_A Large-conductance mechanosensitive channel; stretch activated ION
           channel mechanosensitive, membrane protein; 3.50A
           {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
          Length = 174

 Score = 25.9 bits (56), Expect = 10.0
 Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 7/53 (13%)

Query: 161 IVNKFNRK-------SESQNLIQNILDLMKNKQSNYPDPEIDRKAEADMDEDY 206
             N   +K            L+  I DL+     + P     R   +  D   
Sbjct: 116 PYNTLRKKGEVEQPGDTQVVLLTEIRDLLAQTNGDSPGRHGGRGTPSPTDGPR 168


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0486    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,869,599
Number of extensions: 213075
Number of successful extensions: 361
Number of sequences better than 10.0: 1
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 10
Length of query: 264
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,133,061
Effective search space: 710886492
Effective search space used: 710886492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.9 bits)