RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1550
         (264 letters)



>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 248

 Score = 28.8 bits (64), Expect = 0.56
 Identities = 9/60 (15%), Positives = 24/60 (40%)

Query: 148 FQKVIFGKEKFAEIVNKFNRKSESQNLIQNILDLMKNKQSNYPDPEIDRKAEADMDEDYK 207
           FQ+ ++ K+             +   +I + L+L++ K       E   +   D++ ++ 
Sbjct: 182 FQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFL 241


>d2dy1a3 d.14.1.1 (A:455-569) Elongation factor G (EF-G), domain IV
           {Thermus thermophilus, EF-G-2 [TaxId: 274]}
          Length = 115

 Score = 25.8 bits (56), Expect = 3.0
 Identities = 10/94 (10%), Positives = 30/94 (31%), Gaps = 10/94 (10%)

Query: 148 FQKVIFGKEKFAEIVNKFNRKSESQNLIQNILDLMKNKQSNYPDPEIDRKAEADMDEDYK 207
           ++K   G  ++ ++  +    SE     +    ++ +K        I+   +    +   
Sbjct: 16  YKKQTGGHGQYGDVWLRLEPASEYGFEWRITGGVIPSKY----QEAIEEGIKEAAKKGVL 71

Query: 208 MRYSRVCVDISSIFYGTRTHSIILVDHNNVMDFH 241
             +    +   +I Y    H       ++ + F 
Sbjct: 72  AGFP--VMGFKAIVYNGSYH----EVDSSDLAFQ 99


>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 273

 Score = 26.4 bits (58), Expect = 3.7
 Identities = 7/63 (11%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 198 AEADMDEDYKMRYSRVCVDISSIFYGTRTHSIILVDHNNVMDFHEWTLDY------ETKK 251
            E D+D     R+  + +   +     + +  ++       D+   T+          ++
Sbjct: 65  GEVDLDLGNYERFLDIRLTKDNNLTTGKIYQYVINKERK-GDYLGKTVQVVPHITDAIQE 123

Query: 252 WIH 254
           W+ 
Sbjct: 124 WVM 126


>d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate
           synthase {Caenorhabditis elegans [TaxId: 6239]}
          Length = 397

 Score = 25.9 bits (57), Expect = 5.3
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 8/47 (17%)

Query: 86  ENVFNGFHIVLLELTLQSTNIYHFSNIAPLDSPSTKVTNVTNKQENK 132
           ++ +  FH VL  L+            AP+  P T ++N   +Q + 
Sbjct: 330 DDEYKPFHSVLSILS------LLLK--APVVPPGTPISNAFMRQFST 368


>d1whua_ a.4.9.1 (A:) Polynucleotide phosphorylase/guanosine
           pentaphosphate synthase (PNPase/GPSI), domain 3 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 104

 Score = 24.4 bits (53), Expect = 8.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 46  NVLGENSRPNGRDRGP 61
            +L E  R +GRD GP
Sbjct: 86  IILNEYKRCDGRDSGP 101


>d2nwva1 d.326.1.1 (A:2-113) Hypothetical protein Ava3320 {Anabaena
           variabilis [TaxId: 1172]}
          Length = 112

 Score = 24.3 bits (53), Expect = 8.9
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 172 QNLIQNILDLMKNKQSNYPDPEIDRKAEADMDEDY 206
           + LI+ +L    N     P+   +     D + D 
Sbjct: 7   RKLIKQVLTEYDNLSRQSPETNYETCLVFDENHDN 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 955,554
Number of extensions: 42100
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 10
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.0 bits)