BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15502
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B59|A Chain A, Complex Of Human Methionine Aminopeptidase-2 Complexed
With Ovalicin
Length = 370
Score = 103 bits (257), Expect = 2e-23, Method: Composition-based stats.
Identities = 44/58 (75%), Positives = 51/58 (87%)
Query: 42 IHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFEASYIPLR 99
IHAGKTVPIV+GGE T MEE E YAIETFGSTGKG+VHDDM+ SHYMKNF+ ++P+R
Sbjct: 230 IHAGKTVPIVKGGEATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVGHVPIR 287
>pdb|1R58|A Chain A, Crystal Structure Of Metap2 Complexed With A357300
pdb|1R5G|A Chain A, Crystal Structure Of Metap2 Complexed With A311263
pdb|1R5H|A Chain A, Crystal Structure Of Metap2 Complexed With A320282
pdb|2ADU|A Chain A, Human Methionine Aminopeptidase Complex With 4-Aryl-1,2,3-
Triazole Inhibitor
pdb|1YW7|A Chain A, H-Metap2 Complexed With A444148
pdb|1YW8|A Chain A, H-Metap2 Complexed With A751277
pdb|1YW9|A Chain A, H-Metap2 Complexed With A849519
pdb|2GA2|A Chain A, H-Metap2 Complexed With A193400
pdb|2OAZ|A Chain A, Human Methionine Aminopeptidase-2 Complexed With Sb-587094
pdb|2EA2|A Chain A, H-Metap2 Complexed With A773812
pdb|2EA4|A Chain A, H-Metap2 Complexed With A797859
Length = 369
Score = 103 bits (256), Expect = 3e-23, Method: Composition-based stats.
Identities = 43/58 (74%), Positives = 51/58 (87%)
Query: 42 IHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFEASYIPLR 99
IHAGKTVPI++GGE T MEE E YAIETFGSTGKG+VHDDM+ SHYMKNF+ ++P+R
Sbjct: 229 IHAGKTVPIIKGGEATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVGHVPIR 286
>pdb|1B6A|A Chain A, Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 103 bits (256), Expect = 4e-23, Method: Composition-based stats.
Identities = 44/58 (75%), Positives = 51/58 (87%)
Query: 42 IHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFEASYIPLR 99
IHAGKTVPIV+GGE T MEE E YAIETFGSTGKG+VHDDM+ SHYMKNF+ ++P+R
Sbjct: 338 IHAGKTVPIVKGGEATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVGHVPIR 395
>pdb|1QZY|A Chain A, Human Methionine Aminopeptidase In Complex With Bengamide
Inhibitor Laf153 And Cobalt
pdb|1KQ0|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With D-
Methionine
pdb|1KQ9|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With L-
Methionine
pdb|1BN5|A Chain A, Human Methionine Aminopeptidase 2
pdb|1BOA|A Chain A, Human Methionine Aminopeptidase 2 Complexed With
Angiogenesis Inhibitor Fumagillin
Length = 478
Score = 102 bits (254), Expect = 5e-23, Method: Composition-based stats.
Identities = 43/58 (74%), Positives = 51/58 (87%)
Query: 42 IHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFEASYIPLR 99
IHAGKTVPI++GGE T MEE E YAIETFGSTGKG+VHDDM+ SHYMKNF+ ++P+R
Sbjct: 338 IHAGKTVPIIKGGEATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVGHVPIR 395
>pdb|3FM3|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FM3|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2
pdb|3FMQ|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMQ|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Fumagillin Bound
pdb|3FMR|A Chain A, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
pdb|3FMR|B Chain B, Crystal Structure Of An Encephalitozoon Cuniculi
Methionine Aminopeptidase Type 2 With Angiogenesis
Inhibitor Tnp470 Bound
Length = 358
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 42 IHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKN 90
IH G ++P V + T ++ + FYA+ETF +TGKG + D SH++ N
Sbjct: 217 IHGGISIPAVNNRDTTRIKGDSFYAVETFATTGKGSIDDRPPCSHFVLN 265
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 41 SIHAGKTVP-IVRGGEGTLMEENEFYAIETFGSTGKGMV 78
+HAG ++P I R + +++E + +AIE F + G G V
Sbjct: 159 KLHAGISIPNIYRPHDNYVLKEGDVFAIEPFATIGAGQV 197
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 41 SIHAGKTVP-IVRGGEGTLMEENEFYAIETFGSTGKGMV 78
+HAG ++P I R + +++E + +AIE F + G G V
Sbjct: 159 KLHAGISIPNIYRPHDNYVLKEGDVFAIEPFATIGAGQV 197
>pdb|3IEE|A Chain A, Crystal Structure Of Hypothetical Protein Bf3319 From
Bacteroides Fragilis (Yp_212931.1) From Bacteroides
Fragilis Nctc 9343 At 1.70 A Resolution
Length = 270
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 25 KLSGPKPPIFIKHSSRSIHAGKTVPIVRGGEGTLMEENEFYA-IETFGSTGKGMV----H 79
+ GP+ + + ++ + A K +P+V G EG F + +ETF K + +
Sbjct: 194 RXDGPRIDLKVAELTKQLDAAKKLPVVNGHEGEXKSYQAFLSQVETFIKQVKKVREKGEY 253
Query: 80 DDMDVSHYMKNFEASYI 96
D D FE S I
Sbjct: 254 SDADYDXLTSAFETSII 270
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 1 MFLVTKSWTGLVTEERFSIQIAPTKLSGPKPPIFIKHSSRSIHAGKTVPIVRGGE 55
+ ++ ++ + + T+ SIQ A KL K I I H +I + ++R GE
Sbjct: 512 ILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGE 566
>pdb|3TV9|A Chain A, Crystal Structure Of Putative Peptide Maturation Protein
From Shigella Flexneri
Length = 457
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 3 LVTKSWTGLVTEERFSIQIAPTKLSGPKPPIFIKHSSRSIHAGKTVPIVRGG 54
L T W G R +++P KLS K P+ + + G V + GG
Sbjct: 226 LQTPEWVGADCARRTLSRLSPRKLSTXKAPVIFANEVATGLFGHLVGAIAGG 277
>pdb|4EXL|A Chain A, Crystal Structure Of Putative Phosphate Abc Transporter,
Periplasmic Phosphate-Binding Protein Psts 1 (Pbp1)
From Streptococcus Pneumoniae Canada Mdr_19a
pdb|4EXL|B Chain B, Crystal Structure Of Putative Phosphate Abc Transporter,
Periplasmic Phosphate-Binding Protein Psts 1 (Pbp1)
From Streptococcus Pneumoniae Canada Mdr_19a
pdb|4EXL|C Chain C, Crystal Structure Of Putative Phosphate Abc Transporter,
Periplasmic Phosphate-Binding Protein Psts 1 (Pbp1)
From Streptococcus Pneumoniae Canada Mdr_19a
pdb|4EXL|D Chain D, Crystal Structure Of Putative Phosphate Abc Transporter,
Periplasmic Phosphate-Binding Protein Psts 1 (Pbp1)
From Streptococcus Pneumoniae Canada Mdr_19a
Length = 265
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 41 SIHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVS 85
+IH GKTV + GG GT + + + A++ S D +D S
Sbjct: 27 TIHVGKTVNVQGGGSGTGLSQVQSGAVDIGNSDVFAEEKDGIDAS 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,152,107
Number of Sequences: 62578
Number of extensions: 117813
Number of successful extensions: 198
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 13
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)