Query psy15502
Match_columns 99
No_of_seqs 118 out of 487
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 22:52:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2775|consensus 99.9 8.2E-26 1.8E-30 184.3 4.7 84 14-99 227-314 (397)
2 PTZ00053 methionine aminopepti 99.8 2E-19 4.3E-24 150.9 5.1 84 14-99 300-387 (470)
3 COG0024 Map Methionine aminope 99.6 7.1E-16 1.5E-20 121.3 4.5 57 27-83 159-219 (255)
4 cd01088 MetAP2 Methionine Amin 99.6 4.1E-15 8.9E-20 115.9 6.3 70 24-93 136-209 (291)
5 TIGR00501 met_pdase_II methion 99.5 8.4E-15 1.8E-19 114.7 6.5 68 25-92 141-212 (295)
6 PRK08671 methionine aminopepti 99.5 9.2E-15 2E-19 113.9 5.9 68 24-91 137-208 (291)
7 TIGR00495 crvDNA_42K 42K curve 99.3 3E-12 6.6E-17 104.5 6.2 69 25-93 175-254 (389)
8 PLN03158 methionine aminopepti 98.7 1.2E-08 2.7E-13 84.0 3.5 50 27-76 289-342 (396)
9 KOG2738|consensus 98.7 1.6E-08 3.5E-13 83.2 3.3 51 28-78 269-323 (369)
10 PRK07281 methionine aminopepti 98.4 1.7E-07 3.8E-12 73.8 3.5 48 30-77 190-241 (286)
11 PRK12897 methionine aminopepti 98.4 2.4E-07 5.2E-12 70.0 3.3 48 29-76 158-209 (248)
12 TIGR00500 met_pdase_I methioni 98.4 5E-07 1.1E-11 67.5 4.7 49 32-80 160-212 (247)
13 PRK05716 methionine aminopepti 98.3 5.8E-07 1.2E-11 67.0 4.5 49 32-80 162-214 (252)
14 PRK12896 methionine aminopepti 98.3 5.5E-07 1.2E-11 67.3 4.3 51 32-82 167-222 (255)
15 PRK12318 methionine aminopepti 98.3 3.7E-07 8E-12 71.7 3.1 45 30-74 200-247 (291)
16 cd01085 APP X-Prolyl Aminopept 98.1 3.5E-06 7.6E-11 63.7 3.7 43 40-83 168-211 (224)
17 cd01086 MetAP1 Methionine Amin 97.9 1.7E-05 3.6E-10 58.7 5.0 48 33-80 153-204 (238)
18 PRK09795 aminopeptidase; Provi 97.3 0.00028 6.1E-09 56.0 3.8 39 39-80 295-334 (361)
19 cd01090 Creatinase Creatine am 97.3 0.00029 6.3E-09 53.1 3.7 35 39-73 164-200 (228)
20 cd01092 APP-like Similar to Pr 97.2 0.0004 8.7E-09 49.6 3.5 39 39-80 158-197 (208)
21 cd01087 Prolidase Prolidase. E 97.1 0.00046 1E-08 51.4 3.5 34 39-73 176-209 (243)
22 PF00557 Peptidase_M24: Metall 97.0 0.00083 1.8E-08 48.4 3.9 39 39-79 157-198 (207)
23 cd01066 APP_MetAP A family inc 96.7 0.0025 5.4E-08 44.3 3.7 33 39-74 157-189 (207)
24 PRK15173 peptidase; Provisiona 96.4 0.0041 8.8E-08 49.4 3.9 37 37-76 254-294 (323)
25 PRK14576 putative endopeptidas 95.9 0.0087 1.9E-07 48.8 3.8 38 40-80 342-380 (405)
26 PRK10879 proline aminopeptidas 95.9 0.0048 1E-07 51.1 2.2 32 39-73 355-386 (438)
27 cd01091 CDC68-like Related to 95.8 0.0057 1.2E-07 46.9 1.9 32 39-72 176-207 (243)
28 PRK14575 putative peptidase; P 95.7 0.01 2.3E-07 48.4 3.4 33 37-72 337-372 (406)
29 COG0006 PepP Xaa-Pro aminopept 95.2 0.019 4.2E-07 45.9 3.2 40 39-80 317-359 (384)
30 TIGR02993 ectoine_eutD ectoine 94.1 0.074 1.6E-06 43.1 4.2 34 39-72 323-358 (391)
31 PRK13607 proline dipeptidase; 91.1 0.12 2.6E-06 43.2 1.6 34 39-72 342-388 (443)
32 cd01089 PA2G4-like Related to 90.7 0.19 4.1E-06 37.5 2.2 44 28-77 160-209 (228)
33 KOG2414|consensus 76.6 1.4 3.1E-05 38.2 1.5 30 39-73 409-438 (488)
34 KOG2737|consensus 59.1 3.5 7.7E-05 35.8 0.3 24 46-69 388-412 (492)
35 PF10781 DSRB: Dextransucrase 58.7 6.7 0.00014 25.6 1.5 23 54-77 11-33 (62)
36 PRK10708 hypothetical protein; 57.3 6.9 0.00015 25.5 1.4 22 55-77 12-33 (62)
37 PRK06488 sulfur carrier protei 56.5 12 0.00026 22.9 2.4 56 18-74 2-65 (65)
38 PF10681 Rot1: Chaperone for p 50.8 27 0.00058 27.7 4.0 54 10-80 42-95 (212)
39 KOG1942|consensus 50.5 5.6 0.00012 34.0 0.2 71 23-99 152-225 (456)
40 TIGR01683 thiS thiamine biosyn 50.0 31 0.00067 21.0 3.5 56 19-74 1-64 (64)
41 KOG2413|consensus 37.9 28 0.0006 31.4 2.5 42 40-81 483-526 (606)
42 PF14453 ThiS-like: ThiS-like 37.8 44 0.00096 21.2 2.8 48 18-65 2-51 (57)
43 COG0361 InfA Translation initi 31.4 39 0.00085 22.6 1.9 20 54-73 42-61 (75)
44 PRK12442 translation initiatio 28.8 2E+02 0.0043 19.8 5.2 16 56-71 44-59 (87)
45 PF01000 RNA_pol_A_bac: RNA po 28.1 62 0.0013 21.7 2.5 23 57-79 86-108 (112)
46 PF07292 NID: Nmi/IFP 35 domai 25.4 39 0.00085 23.0 1.1 37 11-47 14-51 (88)
47 PF09891 DUF2118: Uncharacteri 23.1 98 0.0021 23.0 2.9 25 53-80 96-120 (150)
48 PF03506 Flu_C_NS1: Influenza 22.4 44 0.00095 24.9 0.9 40 11-52 14-56 (162)
49 PF07305 DUF1454: Protein of u 21.3 53 0.0012 25.8 1.2 9 62-70 179-187 (200)
No 1
>KOG2775|consensus
Probab=99.92 E-value=8.2e-26 Score=184.30 Aligned_cols=84 Identities=57% Similarity=0.892 Sum_probs=82.7
Q ss_pred eeeEEEEecceeeeCCccceeeccc----ccccccCceeeeeeCCCCeEeecCcEEEEeEeeeCCcceEEeCCceeeeee
Q psy15502 14 EERFSIQIAPTKLSGPKPPIFIKHS----SRSIHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMK 89 (99)
Q Consensus 14 ~~~~~~~~~~~~~s~~~~vVrnl~G----gy~lHegPsIPN~~~g~~~~L~eGmV~AIEPF~TtG~g~V~~~~~~~iy~~ 89 (99)
||||+|||||++. ++++||||+| +|.||+|++||+++.+..++|+||++||||+|++||+|+|+++.+||||++
T Consensus 227 meSyEvEi~Gk~~--~VKpIrnLnGHSI~~yrIH~gksVPiVkgge~trmee~e~yAIETFgSTGkG~v~ddmecSHymk 304 (397)
T KOG2775|consen 227 MESYEVEINGKTY--QVKPIRNLNGHSIAQYRIHGGKSVPIVKGGEQTRMEEGEIYAIETFGSTGKGYVHDDMECSHYMK 304 (397)
T ss_pred hhheEEEeCCcee--cceeccccCCCcccceEeecCcccceecCCcceeecCCeeEEEEeeccCCcceecCCcccchhhh
Confidence 8999999999988 9999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q psy15502 90 NFEASYIPLR 99 (99)
Q Consensus 90 ~~~~~~~~~~ 99 (99)
|.+..++|||
T Consensus 305 n~~~~~vplr 314 (397)
T KOG2775|consen 305 NFELGHVPLR 314 (397)
T ss_pred hccccccccc
Confidence 9999999997
No 2
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=99.77 E-value=2e-19 Score=150.91 Aligned_cols=84 Identities=48% Similarity=0.800 Sum_probs=78.0
Q ss_pred eeeEEEEecceeeeCCccceeeccc---c-cccccCceeeeeeCCCCeEeecCcEEEEeEeeeCCcceEEeCCceeeeee
Q psy15502 14 EERFSIQIAPTKLSGPKPPIFIKHS---S-RSIHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMK 89 (99)
Q Consensus 14 ~~~~~~~~~~~~~s~~~~vVrnl~G---g-y~lHegPsIPN~~~g~~~~L~eGmV~AIEPF~TtG~g~V~~~~~~~iy~~ 89 (99)
+++|.++|||+.+ |+++|++++| | |.+|++|+|||+..++..+|++|||||||||+|+|.|+|.++.+|+||++
T Consensus 300 ies~G~e~~Gk~f--~~k~I~nltGHgIG~y~iHe~k~iP~v~~~~~~~LeeGmVfaIEPf~stG~G~v~~~~~~siY~~ 377 (470)
T PTZ00053 300 IESYEVEIKGKTY--PIKSIRNLNGHSIGPYIIHGGKSVPIVKGGENTRMEEGELFAIETFASTGRGYVNEDLECSHYMK 377 (470)
T ss_pred HHHcCCcccCccc--ccccccCCcccCCCCccccCCCcCCeeCCCCCCEecCCCEEEEcceeeCCCCeEecCCCceeeeE
Confidence 6789999999987 9999999998 4 79999999999988888999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q psy15502 90 NFEASYIPLR 99 (99)
Q Consensus 90 ~~~~~~~~~~ 99 (99)
+.+...+|||
T Consensus 378 ~~~~~~~~lk 387 (470)
T PTZ00053 378 DPGAEFVPLR 387 (470)
T ss_pred cCcCCcCCCC
Confidence 9888766775
No 3
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=7.1e-16 Score=121.26 Aligned_cols=57 Identities=25% Similarity=0.324 Sum_probs=51.7
Q ss_pred eCCccceeeccc---ccccccCceeeeeeC-CCCeEeecCcEEEEeEeeeCCcceEEeCCc
Q psy15502 27 SGPKPPIFIKHS---SRSIHAGKTVPIVRG-GEGTLMEENEFYAIETFGSTGKGMVHDDMD 83 (99)
Q Consensus 27 s~~~~vVrnl~G---gy~lHegPsIPN~~~-g~~~~L~eGmV~AIEPF~TtG~g~V~~~~~ 83 (99)
+++++|||||+| |..+|++|+||||.. +.+.+|+||||||||||+|+|.+.+...+.
T Consensus 159 ~~G~~vVr~~~GHgig~~~He~p~ip~y~~~~~~~~l~~Gmv~aIEPmi~~G~~~~~~~~~ 219 (255)
T COG0024 159 SRGFSVVRNLTGHGIGRELHEEPSIPNYGKDGTGVRLKEGMVFAIEPMINTGSGEVVEGPS 219 (255)
T ss_pred HcCCEEeecccCCccCcccCCCCeeccccCCCCCcccCCCCEEEEeeEEEcCCCceEecCC
Confidence 678999999999 789999999999955 667999999999999999999999888773
No 4
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=99.57 E-value=4.1e-15 Score=115.87 Aligned_cols=70 Identities=46% Similarity=0.648 Sum_probs=62.9
Q ss_pred eeeeCCccceeeccc---c-cccccCceeeeeeCCCCeEeecCcEEEEeEeeeCCcceEEeCCceeeeeeccCC
Q psy15502 24 TKLSGPKPPIFIKHS---S-RSIHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFEA 93 (99)
Q Consensus 24 ~~~s~~~~vVrnl~G---g-y~lHegPsIPN~~~g~~~~L~eGmV~AIEPF~TtG~g~V~~~~~~~iy~~~~~~ 93 (99)
.+-+++++++++++| | |.+|++|+|||+..+.+..|++|||||||||+++|.|+|.++..++||+++.+.
T Consensus 136 ~i~~~G~~~~~~~~GHgig~~~~h~~~~ip~~~~~~~~~le~gmV~aIEp~~s~G~G~v~~~~~~~iy~~~~~~ 209 (291)
T cd01088 136 VIESYGFKPIRNLTGHSIERYRLHAGKSIPNVKGGEGTRLEEGDVYAIEPFATTGKGYVHDGPECSIYMLNRDK 209 (291)
T ss_pred HHHHcCCEEeecCCccCccCccccCCCccCccCCCCCCEeCCCCEEEEceeEECCCCeeecCCceEEEEEcCCC
Confidence 344567888999998 5 899999999999887889999999999999999999999999999999997665
No 5
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=99.55 E-value=8.4e-15 Score=114.67 Aligned_cols=68 Identities=34% Similarity=0.402 Sum_probs=61.3
Q ss_pred eeeCCccceeeccc----ccccccCceeeeeeCCCCeEeecCcEEEEeEeeeCCcceEEeCCceeeeeeccC
Q psy15502 25 KLSGPKPPIFIKHS----SRSIHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFE 92 (99)
Q Consensus 25 ~~s~~~~vVrnl~G----gy~lHegPsIPN~~~g~~~~L~eGmV~AIEPF~TtG~g~V~~~~~~~iy~~~~~ 92 (99)
.-+++++++++++| +|.+|++++|||+..++..+|++|||||||||+++|.|.|.+.+.++||++...
T Consensus 141 i~~~G~~~i~~~~GHgig~~~~h~g~~ip~i~~~~~~~le~GmV~aIEP~~~~G~G~v~~~~~~~iy~~~~~ 212 (295)
T TIGR00501 141 IESYGVKPISNLTGHSMAPYRLHGGKSIPNVKERDTTKLEEGDVVAIEPFATDGVGYVTDGGEVSIYAFLAE 212 (295)
T ss_pred HHHcCCeeecCCCCcceecccccCCCccCeecCCCCCEeCCCCEEEEceeEECCcCeEecCCCeEEEeECCC
Confidence 34567888899998 589999999999988888999999999999999999999999999999998654
No 6
>PRK08671 methionine aminopeptidase; Provisional
Probab=99.54 E-value=9.2e-15 Score=113.89 Aligned_cols=68 Identities=32% Similarity=0.417 Sum_probs=61.1
Q ss_pred eeeeCCccceeeccc---c-cccccCceeeeeeCCCCeEeecCcEEEEeEeeeCCcceEEeCCceeeeeecc
Q psy15502 24 TKLSGPKPPIFIKHS---S-RSIHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNF 91 (99)
Q Consensus 24 ~~~s~~~~vVrnl~G---g-y~lHegPsIPN~~~g~~~~L~eGmV~AIEPF~TtG~g~V~~~~~~~iy~~~~ 91 (99)
..-+++++++++++| | |.+|++|+|||+..+++..|+||||||||||+++|.|.|+++..++||+++.
T Consensus 137 vi~~~G~~~~~~~~GHgiG~~~~he~p~ip~~~~~~~~~le~GmV~aIEp~~t~G~G~v~~~~~~~iy~~~~ 208 (291)
T PRK08671 137 TIRSYGFKPIRNLTGHGLERYELHAGPSIPNYDEGGGVKLEEGDVYAIEPFATDGEGKVVEGPEVEIYSLLR 208 (291)
T ss_pred HHHHcCCcccCCCcccCcCCCcccCCCccCccCCCCCceeCCCCEEEEcceEECCCCeEecCCceEEEeecC
Confidence 344667888889988 4 7999999999998888999999999999999999999999999999999854
No 7
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=99.31 E-value=3e-12 Score=104.55 Aligned_cols=69 Identities=25% Similarity=0.259 Sum_probs=57.0
Q ss_pred eeeCCccceeeccc----ccccccCcee-eeeeC-----CCCeEeecCcEEEEeEeeeCCcceEEeCC-ceeeeeeccCC
Q psy15502 25 KLSGPKPPIFIKHS----SRSIHAGKTV-PIVRG-----GEGTLMEENEFYAIETFGSTGKGMVHDDM-DVSHYMKNFEA 93 (99)
Q Consensus 25 ~~s~~~~vVrnl~G----gy~lHegPsI-PN~~~-----g~~~~L~eGmV~AIEPF~TtG~g~V~~~~-~~~iy~~~~~~ 93 (99)
.-++++++|+|++| +|.+|++|+| ||+.. ..+.+|++|||||||||+|+|.|++++.. .++||+++...
T Consensus 175 ~~~~G~~~v~~~~gH~igr~~~~g~~~Ii~~~~~~~~~~~~~~~le~gev~aIEp~vs~G~g~v~~~~~~~tiy~~~~~~ 254 (389)
T TIGR00495 175 AHSYGCTPVEGMLSHQLKQHVIDGEKVIISNPSDSQKKDHDTAEFEENEVYAVDILVSTGEGKAKDADQRTTIYKRDPSK 254 (389)
T ss_pred HHHcCCeecCCceeecccceeccCCCeeeecCCccccCCCCCCEecCCCEEEEeeeecCCCceEEECCCeeEEEEECCCC
Confidence 44678999999998 5555559985 77642 45789999999999999999999999998 59999987654
No 8
>PLN03158 methionine aminopeptidase; Provisional
Probab=98.69 E-value=1.2e-08 Score=84.01 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=42.5
Q ss_pred eCCccceeeccc---ccccccCceeeeeeC-CCCeEeecCcEEEEeEeeeCCcc
Q psy15502 27 SGPKPPIFIKHS---SRSIHAGKTVPIVRG-GEGTLMEENEFYAIETFGSTGKG 76 (99)
Q Consensus 27 s~~~~vVrnl~G---gy~lHegPsIPN~~~-g~~~~L~eGmV~AIEPF~TtG~g 76 (99)
+.++.+++++.| |..+|+.|+||+|.. .....|++||||+||||++.|..
T Consensus 289 ~~G~~~v~~~~GHGIG~~~He~P~i~~~~~~~~~~~l~~GMVfTIEP~i~~g~~ 342 (396)
T PLN03158 289 MSGLSVVKSYCGHGIGELFHCAPNIPHYARNKAVGVMKAGQVFTIEPMINAGVW 342 (396)
T ss_pred HcCCCccCCccCCccccccCCCCCCCcccCCCCCCEecCCcEEEECCeeccCcc
Confidence 346778999987 999999999999954 56679999999999999997754
No 9
>KOG2738|consensus
Probab=98.66 E-value=1.6e-08 Score=83.17 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=45.5
Q ss_pred CCccceeeccc---ccccccCceeeeeeC-CCCeEeecCcEEEEeEeeeCCcceE
Q psy15502 28 GPKPPIFIKHS---SRSIHAGKTVPIVRG-GEGTLMEENEFYAIETFGSTGKGMV 78 (99)
Q Consensus 28 ~~~~vVrnl~G---gy~lHegPsIPN~~~-g~~~~L~eGmV~AIEPF~TtG~g~V 78 (99)
.+++|||.|+| +.-+|.+|.||+|.+ ..-..|++||+|+||||+|.|...-
T Consensus 269 ~g~sVVr~ycGHGig~~FH~~PnipHya~n~a~GvM~~G~tFTIEPmit~G~~~d 323 (369)
T KOG2738|consen 269 NGYSVVRSYCGHGIGRVFHCAPNIPHYAKNKAPGVMKPGQTFTIEPMITIGTWED 323 (369)
T ss_pred cCceeehhhhccccccccccCCCchhhcccCCcceeecCceEEeeeeeccccccc
Confidence 47899999998 999999999999955 5667999999999999999998763
No 10
>PRK07281 methionine aminopeptidase; Reviewed
Probab=98.43 E-value=1.7e-07 Score=73.82 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=40.3
Q ss_pred ccceeeccc---ccccccCceeeeee-CCCCeEeecCcEEEEeEeeeCCcce
Q psy15502 30 KPPIFIKHS---SRSIHAGKTVPIVR-GGEGTLMEENEFYAIETFGSTGKGM 77 (99)
Q Consensus 30 ~~vVrnl~G---gy~lHegPsIPN~~-~g~~~~L~eGmV~AIEPF~TtG~g~ 77 (99)
+..++++.| |..+|+.|.||++. .+....|++||||+|||++..|.+.
T Consensus 190 ~~~~~~~~GHGIGl~~hE~P~i~~~~~~~~~~~Le~GMV~tiEPgiy~~~~~ 241 (286)
T PRK07281 190 YGVVRDLVGHGVGPTMHEEPMVPNYGTAGRGLRLREGMVLTIEPMINTGTWE 241 (286)
T ss_pred CccCCCeeeeeCCCccCCCCcCCCcccCCCCCEECCCCEEEECCeeEcCCcc
Confidence 344667777 99999999999984 5788899999999999999887554
No 11
>PRK12897 methionine aminopeptidase; Reviewed
Probab=98.39 E-value=2.4e-07 Score=70.02 Aligned_cols=48 Identities=17% Similarity=0.138 Sum_probs=39.5
Q ss_pred Cccceeeccc---ccccccCceeeeee-CCCCeEeecCcEEEEeEeeeCCcc
Q psy15502 29 PKPPIFIKHS---SRSIHAGKTVPIVR-GGEGTLMEENEFYAIETFGSTGKG 76 (99)
Q Consensus 29 ~~~vVrnl~G---gy~lHegPsIPN~~-~g~~~~L~eGmV~AIEPF~TtG~g 76 (99)
++...++++| |..+|+.|.++++. .++...|++||||+|||++..|..
T Consensus 158 g~~~~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~l~~Gmv~tiEP~~~~~~~ 209 (248)
T PRK12897 158 GFSVARDFTGHGIGKEIHEEPAIFHFGKQGQGPELQEGMVITIEPIVNVGMR 209 (248)
T ss_pred CCccCCCeEECccCCcccCCCccCCCCCCCCCCCcCCCCEEEECCeEecCCC
Confidence 4455567777 99999999999874 477889999999999999996543
No 12
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=98.38 E-value=5e-07 Score=67.51 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=40.0
Q ss_pred ceeeccc---ccccccCceeeeee-CCCCeEeecCcEEEEeEeeeCCcceEEe
Q psy15502 32 PIFIKHS---SRSIHAGKTVPIVR-GGEGTLMEENEFYAIETFGSTGKGMVHD 80 (99)
Q Consensus 32 vVrnl~G---gy~lHegPsIPN~~-~g~~~~L~eGmV~AIEPF~TtG~g~V~~ 80 (99)
..++++| |..+|+.|.+||+. .+++..|++||||+|||++..|.+.+..
T Consensus 160 ~~~~~~GHgiG~~~~e~p~i~~~~~~~~~~~l~~gmv~~iEp~i~~~~~~~~~ 212 (247)
T TIGR00500 160 VVREYCGHGIGRKFHEEPQIPNYGKKFTNVRLKEGMVFTIEPMVNTGTEEITT 212 (247)
T ss_pred eccCccCCccCcccCCCCccCCcCcCCCCCEecCCCEEEEeeEEEcCCCcEEE
Confidence 3455666 99999999999985 4678999999999999999987665444
No 13
>PRK05716 methionine aminopeptidase; Validated
Probab=98.35 E-value=5.8e-07 Score=67.04 Aligned_cols=49 Identities=22% Similarity=0.376 Sum_probs=39.9
Q ss_pred ceeeccc---ccccccCceeeee-eCCCCeEeecCcEEEEeEeeeCCcceEEe
Q psy15502 32 PIFIKHS---SRSIHAGKTVPIV-RGGEGTLMEENEFYAIETFGSTGKGMVHD 80 (99)
Q Consensus 32 vVrnl~G---gy~lHegPsIPN~-~~g~~~~L~eGmV~AIEPF~TtG~g~V~~ 80 (99)
..+++.| |..+|+.|.++++ ..+++..|+|||||+|||++..|.+.+..
T Consensus 162 ~~~~~~GHgiG~~~~e~p~~~~~~~~~~~~~le~Gmv~~vEp~i~~~~~~~~~ 214 (252)
T PRK05716 162 VVREYCGHGIGRKFHEEPQIPHYGAPGDGPVLKEGMVFTIEPMINAGKREVKT 214 (252)
T ss_pred eecCccccccCCccCCCCccCcCCCCCCCCEecCCCEEEEccEEEcCCCceEE
Confidence 3455666 9999999999998 45788999999999999999986655443
No 14
>PRK12896 methionine aminopeptidase; Reviewed
Probab=98.34 E-value=5.5e-07 Score=67.26 Aligned_cols=51 Identities=18% Similarity=0.074 Sum_probs=39.7
Q ss_pred ceeeccc---ccccccCceee-ee-eCCCCeEeecCcEEEEeEeeeCCcceEEeCC
Q psy15502 32 PIFIKHS---SRSIHAGKTVP-IV-RGGEGTLMEENEFYAIETFGSTGKGMVHDDM 82 (99)
Q Consensus 32 vVrnl~G---gy~lHegPsIP-N~-~~g~~~~L~eGmV~AIEPF~TtG~g~V~~~~ 82 (99)
..+++.| |..+|+.|.+. ++ ..+++..|++||||+|||+++.|..++....
T Consensus 167 ~~~~~~GHgiG~~~he~p~~~~~~~~~~~~~~le~GmV~~iEp~i~~g~~~~~~~~ 222 (255)
T PRK12896 167 VVRDLTGHGVGRSLHEEPSVILTYTDPLPNRLLRPGMTLAVEPFLNLGAKDAETLD 222 (255)
T ss_pred eccCcccCCcCcccccCCCccccCCCCCCCCEecCCcEEEEeceEEcCCCceEEcC
Confidence 3456666 88999999554 44 3467889999999999999999988766543
No 15
>PRK12318 methionine aminopeptidase; Provisional
Probab=98.32 E-value=3.7e-07 Score=71.70 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=38.2
Q ss_pred ccceeeccc---ccccccCceeeeeeCCCCeEeecCcEEEEeEeeeCC
Q psy15502 30 KPPIFIKHS---SRSIHAGKTVPIVRGGEGTLMEENEFYAIETFGSTG 74 (99)
Q Consensus 30 ~~vVrnl~G---gy~lHegPsIPN~~~g~~~~L~eGmV~AIEPF~TtG 74 (99)
+.+++.+.| |..+||.|.|+++.+++...|++||||+|||++..+
T Consensus 200 ~~~~~~~~GHgIGl~~hE~P~i~~~~~~~~~~L~~GMV~~iEP~i~~~ 247 (291)
T PRK12318 200 FSVVDQFVGHGVGIKFHENPYVPHHRNSSKIPLAPGMIFTIEPMINVG 247 (291)
T ss_pred CccCCCcccCCcCccccCCCcccCcCCCCCCEeCCCCEEEECCEEEcC
Confidence 344456666 999999999999877778899999999999999865
No 16
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=98.08 E-value=3.5e-06 Score=63.67 Aligned_cols=43 Identities=12% Similarity=-0.004 Sum_probs=33.9
Q ss_pred cccccCceeeeeeCCCCeEeecCcEEEEeEeee-CCcceEEeCCc
Q psy15502 40 RSIHAGKTVPIVRGGEGTLMEENEFYAIETFGS-TGKGMVHDDMD 83 (99)
Q Consensus 40 y~lHegPsIPN~~~g~~~~L~eGmV~AIEPF~T-tG~g~V~~~~~ 83 (99)
..+||.|.++ +..++...|++||||+|||++. .|.+-|+....
T Consensus 168 l~~hE~P~i~-~~~~~~~~L~~GmvftiEP~iy~~g~~gvried~ 211 (224)
T cd01085 168 LNVHEGPQSI-SPAPNNVPLKAGMILSNEPGYYKEGKYGIRIENL 211 (224)
T ss_pred CcCCCCCCcC-CcCCCCCCcCCCCEEEECCEeEeCCCeEEEeeEE
Confidence 5889999987 5556778999999999999998 56665554443
No 17
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=97.94 E-value=1.7e-05 Score=58.73 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=37.8
Q ss_pred eeeccc---ccccccCceeeee-eCCCCeEeecCcEEEEeEeeeCCcceEEe
Q psy15502 33 IFIKHS---SRSIHAGKTVPIV-RGGEGTLMEENEFYAIETFGSTGKGMVHD 80 (99)
Q Consensus 33 Vrnl~G---gy~lHegPsIPN~-~~g~~~~L~eGmV~AIEPF~TtG~g~V~~ 80 (99)
.+++.| |..+|+.|.++++ ..+.+..|++||||+|||++..|.+.+..
T Consensus 153 ~~~~~GHgiG~~~~e~p~~~~~~~~~~~~~le~Gmv~~iep~i~~~~~~~~~ 204 (238)
T cd01086 153 VREFGGHGIGRKFHEEPQIPNYGRPGTGPKLKPGMVFTIEPMINLGTYEVVT 204 (238)
T ss_pred ecCccccCCCCccccCCCcCCccCCCCCCEecCCCEEEEeeEEECCCCceEE
Confidence 445566 8899999999866 45778899999999999999876544333
No 18
>PRK09795 aminopeptidase; Provisional
Probab=97.28 E-value=0.00028 Score=56.03 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=30.4
Q ss_pred ccccccCceeeeeeCCCCeEeecCcEEEEeEeee-CCcceEEe
Q psy15502 39 SRSIHAGKTVPIVRGGEGTLMEENEFYAIETFGS-TGKGMVHD 80 (99)
Q Consensus 39 gy~lHegPsIPN~~~g~~~~L~eGmV~AIEPF~T-tG~g~V~~ 80 (99)
|+.+|+.|.| ..++...|++||||+|||.+. .|.+-|+.
T Consensus 295 Gl~~he~p~i---~~~~~~~l~~gmv~~iEpgiy~~~~~gvri 334 (361)
T PRK09795 295 GIEVHEDPRF---SPRDTTTLQPGMLLTVEPGIYLPGQGGVRI 334 (361)
T ss_pred CccccCCCCc---CCCCCCCcCCCCEEEECCEEEeCCCCEEEE
Confidence 8999998865 456778999999999999986 45444444
No 19
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=97.27 E-value=0.00029 Score=53.08 Aligned_cols=35 Identities=14% Similarity=-0.024 Sum_probs=26.9
Q ss_pred ccccccCce--eeeeeCCCCeEeecCcEEEEeEeeeC
Q psy15502 39 SRSIHAGKT--VPIVRGGEGTLMEENEFYAIETFGST 73 (99)
Q Consensus 39 gy~lHegPs--IPN~~~g~~~~L~eGmV~AIEPF~Tt 73 (99)
|...|+.|. .|.+..+...+|++||||+|||++..
T Consensus 164 Gl~~he~~~~~g~~~~~~~~~~Le~GMV~~iEP~i~~ 200 (228)
T cd01090 164 GVLSHYYGREAGLELREDIDTVLEPGMVVSMEPMIML 200 (228)
T ss_pred ccccccCCCccccccCCCCCCccCCCCEEEECCEEee
Confidence 666788662 23445567789999999999999975
No 20
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=97.20 E-value=0.0004 Score=49.62 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=29.9
Q ss_pred ccccccCceeeeeeCCCCeEeecCcEEEEeEeeeC-CcceEEe
Q psy15502 39 SRSIHAGKTVPIVRGGEGTLMEENEFYAIETFGST-GKGMVHD 80 (99)
Q Consensus 39 gy~lHegPsIPN~~~g~~~~L~eGmV~AIEPF~Tt-G~g~V~~ 80 (99)
|+.+|+.|.| ..+++..|++||+|+|||++.. |.+-+..
T Consensus 158 G~~~~e~p~i---~~~~~~~l~~gmv~~iep~~~~~~~~g~~~ 197 (208)
T cd01092 158 GLEVHEAPYI---SPGSDDVLEEGMVFTIEPGIYIPGKGGVRI 197 (208)
T ss_pred CcccCcCCCc---CCCCCCCcCCCCEEEECCeEEecCCCEEEe
Confidence 8889998864 4567889999999999999863 4444433
No 21
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=97.14 E-value=0.00046 Score=51.43 Aligned_cols=34 Identities=12% Similarity=-0.084 Sum_probs=26.7
Q ss_pred ccccccCceeeeeeCCCCeEeecCcEEEEeEeeeC
Q psy15502 39 SRSIHAGKTVPIVRGGEGTLMEENEFYAIETFGST 73 (99)
Q Consensus 39 gy~lHegPsIPN~~~g~~~~L~eGmV~AIEPF~Tt 73 (99)
|..+|+.|.+ ....++...|++||||+|||++..
T Consensus 176 Gl~~~e~p~~-~~~~~~~~~l~~GMv~~iEp~iy~ 209 (243)
T cd01087 176 GLDVHDVGGY-LRYLRRARPLEPGMVITIEPGIYF 209 (243)
T ss_pred CcccccCccc-cccCCCCCCCCCCCEEEECCEEEe
Confidence 8888987755 114467789999999999999863
No 22
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=97.03 E-value=0.00083 Score=48.35 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=26.6
Q ss_pred ccccccC-ceeeeeeCCCCeEeecCcEEEEeEeee--CCcceEE
Q psy15502 39 SRSIHAG-KTVPIVRGGEGTLMEENEFYAIETFGS--TGKGMVH 79 (99)
Q Consensus 39 gy~lHeg-PsIPN~~~g~~~~L~eGmV~AIEPF~T--tG~g~V~ 79 (99)
|..+|+. |.|++ .++...|++||||+|||.+. .|.+-+.
T Consensus 157 G~~~~~~~P~i~~--~~~~~~l~~gmv~~iep~~~~~~~~~g~~ 198 (207)
T PF00557_consen 157 GLEFHEPGPNIAR--PGDDTVLEPGMVFAIEPGLYFIPGWGGVR 198 (207)
T ss_dssp SSSSSEEEEEESS--TTTSSB--TTBEEEEEEEEEEETTSEEEE
T ss_pred cccccccceeeec--ccccceecCCCceeEeeeEEccCCCcEEE
Confidence 7788875 55433 67888999999999999765 3554333
No 23
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=96.65 E-value=0.0025 Score=44.35 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=28.2
Q ss_pred ccccccCceeeeeeCCCCeEeecCcEEEEeEeeeCC
Q psy15502 39 SRSIHAGKTVPIVRGGEGTLMEENEFYAIETFGSTG 74 (99)
Q Consensus 39 gy~lHegPsIPN~~~g~~~~L~eGmV~AIEPF~TtG 74 (99)
|+..|+.|. +..+.+.+|++||+++|||+....
T Consensus 157 G~~~~e~~~---~~~~~~~~l~~gmv~~iep~~~~~ 189 (207)
T cd01066 157 GLEIHEPPV---LKAGDDTVLEPGMVFAVEPGLYLP 189 (207)
T ss_pred CcccCCCCC---cCCCCCCCcCCCCEEEECCEEEEC
Confidence 999999887 445677899999999999999864
No 24
>PRK15173 peptidase; Provisional
Probab=96.40 E-value=0.0041 Score=49.40 Aligned_cols=37 Identities=14% Similarity=0.074 Sum_probs=27.6
Q ss_pred cc-cc--ccccCceeeeeeCCCCeEeecCcEEEEeEeee-CCcc
Q psy15502 37 HS-SR--SIHAGKTVPIVRGGEGTLMEENEFYAIETFGS-TGKG 76 (99)
Q Consensus 37 ~G-gy--~lHegPsIPN~~~g~~~~L~eGmV~AIEPF~T-tG~g 76 (99)
|| |+ .+|+.|.+.. +....|++||||+|||.+- .|.+
T Consensus 254 HGiG~~lg~~E~P~i~~---~~~~~Le~GMV~tiEPgiy~~g~g 294 (323)
T PRK15173 254 HGNGVFLGLEESPFVST---HATESFTSGMVLSLETPYYGYNLG 294 (323)
T ss_pred CcCCCCCCcCCCCCCCC---CCCCccCCCCEEEECCEEEcCCCc
Confidence 45 65 7899987643 5567899999999999764 4444
No 25
>PRK14576 putative endopeptidase; Provisional
Probab=95.95 E-value=0.0087 Score=48.81 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=27.9
Q ss_pred cccccCceeeeeeCCCCeEeecCcEEEEeE-eeeCCcceEEe
Q psy15502 40 RSIHAGKTVPIVRGGEGTLMEENEFYAIET-FGSTGKGMVHD 80 (99)
Q Consensus 40 y~lHegPsIPN~~~g~~~~L~eGmV~AIEP-F~TtG~g~V~~ 80 (99)
-.+|+.|.+ ..++...|++||||+||| +...|.+-++.
T Consensus 342 l~~~e~P~i---~~~~~~~Le~GMv~~vEp~~y~~g~ggvri 380 (405)
T PRK14576 342 LGLEEVPFV---STQATETFCPGMVLSLETPYYGIGVGSIML 380 (405)
T ss_pred CCcCcCCCc---CCCCCCccCCCCEEEECCceeecCCCEEEE
Confidence 467887754 456678999999999997 77766554444
No 26
>PRK10879 proline aminopeptidase P II; Provisional
Probab=95.91 E-value=0.0048 Score=51.05 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=24.5
Q ss_pred ccccccCceeeeeeCCCCeEeecCcEEEEeEeeeC
Q psy15502 39 SRSIHAGKTVPIVRGGEGTLMEENEFYAIETFGST 73 (99)
Q Consensus 39 gy~lHegPsIPN~~~g~~~~L~eGmV~AIEPF~Tt 73 (99)
|-.+|+ +|++..++...|++||||+|||.+..
T Consensus 355 GldvHd---~~~~~~~~~~~L~~GmV~tvEPgiY~ 386 (438)
T PRK10879 355 GLDVHD---VGVYGQDRSRILEPGMVLTVEPGLYI 386 (438)
T ss_pred CcCcCc---CCCcCCCCCCcCCCCCEEEECCEEEE
Confidence 555564 56665567789999999999998863
No 27
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=95.77 E-value=0.0057 Score=46.94 Aligned_cols=32 Identities=3% Similarity=0.011 Sum_probs=26.2
Q ss_pred ccccccCceeeeeeCCCCeEeecCcEEEEeEeee
Q psy15502 39 SRSIHAGKTVPIVRGGEGTLMEENEFYAIETFGS 72 (99)
Q Consensus 39 gy~lHegPsIPN~~~g~~~~L~eGmV~AIEPF~T 72 (99)
|..+|+.|.+. ..+....|++||||+|||-+.
T Consensus 176 Gle~hE~~~~l--~~~~~~~L~~GMvf~vepGi~ 207 (243)
T cd01091 176 GLEFRESSLII--NAKNDRKLKKGMVFNLSIGFS 207 (243)
T ss_pred CcccccCcccc--CCCCCCCcCCCCEEEEeCCcc
Confidence 99999987543 345567899999999999986
No 28
>PRK14575 putative peptidase; Provisional
Probab=95.71 E-value=0.01 Score=48.36 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=26.1
Q ss_pred cc-cc--ccccCceeeeeeCCCCeEeecCcEEEEeEeee
Q psy15502 37 HS-SR--SIHAGKTVPIVRGGEGTLMEENEFYAIETFGS 72 (99)
Q Consensus 37 ~G-gy--~lHegPsIPN~~~g~~~~L~eGmV~AIEPF~T 72 (99)
|| |+ .+|+.|.+. .++...|++||||+|||.+.
T Consensus 337 HGiG~~lg~~e~P~i~---~~~~~~Le~GMv~tiEpgiy 372 (406)
T PRK14575 337 HGNGVFLGLEESPFVS---THATESFTSGMVLSLETPYY 372 (406)
T ss_pred CcccCCCCCccCCCCC---CCCCCCcCCCCEEEECCeee
Confidence 45 65 689988764 35677899999999999874
No 29
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=95.20 E-value=0.019 Score=45.87 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=29.7
Q ss_pred c--cccccCceeeeeeCCCCeEeecCcEEEEeEeee-CCcceEEe
Q psy15502 39 S--RSIHAGKTVPIVRGGEGTLMEENEFYAIETFGS-TGKGMVHD 80 (99)
Q Consensus 39 g--y~lHegPsIPN~~~g~~~~L~eGmV~AIEPF~T-tG~g~V~~ 80 (99)
| -.+||.|. ....+....|++||||++||-.- .|.+-|+.
T Consensus 317 G~~l~vhE~p~--~~~~~~~~~L~~GMv~t~Epg~y~~g~~GirI 359 (384)
T COG0006 317 GFVLDVHEHPQ--YLSPGSDTTLEPGMVFSIEPGIYIPGGGGVRI 359 (384)
T ss_pred CCCcccCcCcc--ccCCCCCccccCCcEEEeccccccCCCceEEE
Confidence 7 89999997 33567889999999999999633 34444333
No 30
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=94.11 E-value=0.074 Score=43.08 Aligned_cols=34 Identities=15% Similarity=0.028 Sum_probs=25.1
Q ss_pred ccccccCc--eeeeeeCCCCeEeecCcEEEEeEeee
Q psy15502 39 SRSIHAGK--TVPIVRGGEGTLMEENEFYAIETFGS 72 (99)
Q Consensus 39 gy~lHegP--sIPN~~~g~~~~L~eGmV~AIEPF~T 72 (99)
|..+|..+ .-|.+..++...|++||||+|||-+-
T Consensus 323 Gl~~~~~~~e~~~~l~~~~~~~L~~GMv~tvEpgiy 358 (391)
T TIGR02993 323 GLSYPPDWGERTMSLRPGDNTVLKPGMTFHFMTGLW 358 (391)
T ss_pred ccCcCCCCCCccccccCCCCceecCCCEEEEcceeE
Confidence 55566433 13456677889999999999999775
No 31
>PRK13607 proline dipeptidase; Provisional
Probab=91.12 E-value=0.12 Score=43.22 Aligned_cols=34 Identities=12% Similarity=-0.114 Sum_probs=24.2
Q ss_pred ccccccCceeeee------------eC-CCCeEeecCcEEEEeEeee
Q psy15502 39 SRSIHAGKTVPIV------------RG-GEGTLMEENEFYAIETFGS 72 (99)
Q Consensus 39 gy~lHegPsIPN~------------~~-g~~~~L~eGmV~AIEPF~T 72 (99)
|-..|+.+.++.. .. .....|++||||+|||=+-
T Consensus 342 GldvHd~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~GmV~TvEPGiY 388 (443)
T PRK13607 342 GLQVHDVAGFMQDDRGTHLAAPEKHPYLRCTRVLEPGMVLTIEPGLY 388 (443)
T ss_pred CcccccCCCcccccccccccccccccccccCCcCCCCcEEEECCeee
Confidence 8889987554321 11 2457899999999999764
No 32
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=90.72 E-value=0.19 Score=37.54 Aligned_cols=44 Identities=14% Similarity=0.049 Sum_probs=29.1
Q ss_pred CCccceeeccc---ccc--cccCceeeeeeCCCCeEeecCcEEEEeEeeeC-Ccce
Q psy15502 28 GPKPPIFIKHS---SRS--IHAGKTVPIVRGGEGTLMEENEFYAIETFGST-GKGM 77 (99)
Q Consensus 28 ~~~~vVrnl~G---gy~--lHegPsIPN~~~g~~~~L~eGmV~AIEPF~Tt-G~g~ 77 (99)
.++++++++.+ +|- .|+++. .-...|++||+|++||.... |.+-
T Consensus 160 ~G~~~~~~~~~h~~g~~~~~~~~~~------~~~~~l~~gmvf~~ep~~~~~g~~~ 209 (228)
T cd01089 160 YGCTPVEGVLSHQLKRVVSSGEGKA------KLVECVKHGLLFPYPVLYEKEGEVV 209 (228)
T ss_pred cCCEEecCccccCcCceEecCCCCc------cchhhccCCcccccceeEccCCCeE
Confidence 46788888875 443 333321 12567999999999999973 4443
No 33
>KOG2414|consensus
Probab=76.55 E-value=1.4 Score=38.23 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=23.3
Q ss_pred ccccccCceeeeeeCCCCeEeecCcEEEEeEeeeC
Q psy15502 39 SRSIHAGKTVPIVRGGEGTLMEENEFYAIETFGST 73 (99)
Q Consensus 39 gy~lHegPsIPN~~~g~~~~L~eGmV~AIEPF~Tt 73 (99)
|-.+|.-|.|| ....|++||||+|||=+--
T Consensus 409 GmDVHD~p~v~-----r~~pL~pg~ViTIEPGvYI 438 (488)
T KOG2414|consen 409 GMDVHDCPTVS-----RDIPLQPGMVITIEPGVYI 438 (488)
T ss_pred CcccccCCCCC-----CCccCCCCceEEecCceec
Confidence 67788877765 4568999999999996543
No 34
>KOG2737|consensus
Probab=59.08 E-value=3.5 Score=35.78 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=18.0
Q ss_pred ceeeeeeC-CCCeEeecCcEEEEeE
Q psy15502 46 KTVPIVRG-GEGTLMEENEFYAIET 69 (99)
Q Consensus 46 PsIPN~~~-g~~~~L~eGmV~AIEP 69 (99)
|+-|-++. .....|+||||++|||
T Consensus 388 p~~P~l~~LR~aR~L~e~MviTvEP 412 (492)
T KOG2737|consen 388 PDEPGLRSLRTARHLKEGMVITVEP 412 (492)
T ss_pred CCcchhhhhhhhhhhhcCcEEEecC
Confidence 34455543 5667899999999999
No 35
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=58.68 E-value=6.7 Score=25.58 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=16.9
Q ss_pred CCCeEeecCcEEEEeEeeeCCcce
Q psy15502 54 GEGTLMEENEFYAIETFGSTGKGM 77 (99)
Q Consensus 54 g~~~~L~eGmV~AIEPF~TtG~g~ 77 (99)
-++...++|-++||||| +.|.-+
T Consensus 11 TDG~~rR~G~ilavE~F-~EG~MY 33 (62)
T PF10781_consen 11 TDGGPRREGVILAVEPF-NEGTMY 33 (62)
T ss_pred cCCcccccceEEEEeec-cCcEEE
Confidence 35556788999999999 455444
No 36
>PRK10708 hypothetical protein; Provisional
Probab=57.34 E-value=6.9 Score=25.50 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=16.5
Q ss_pred CCeEeecCcEEEEeEeeeCCcce
Q psy15502 55 EGTLMEENEFYAIETFGSTGKGM 77 (99)
Q Consensus 55 ~~~~L~eGmV~AIEPF~TtG~g~ 77 (99)
++...++|-++||||| +.|.-+
T Consensus 12 DG~~rR~G~iLavE~F-~EG~My 33 (62)
T PRK10708 12 DGGPRRPGVVLAVEEF-SEGTMY 33 (62)
T ss_pred CCCccccceEEEEeec-cCcEEE
Confidence 4556788999999999 455544
No 37
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=56.54 E-value=12 Score=22.89 Aligned_cols=56 Identities=9% Similarity=0.067 Sum_probs=31.2
Q ss_pred EEEecceeeeCCccceeecccccccccCceeee-e-------eCCCCeEeecCcEEEEeEeeeCC
Q psy15502 18 SIQIAPTKLSGPKPPIFIKHSSRSIHAGKTVPI-V-------RGGEGTLMEENEFYAIETFGSTG 74 (99)
Q Consensus 18 ~~~~~~~~~s~~~~vVrnl~Ggy~lHegPsIPN-~-------~~g~~~~L~eGmV~AIEPF~TtG 74 (99)
+|.+||+.++-.-.-+.+|.-...+-. ..+.- + ..+....|++||.++|=||++-|
T Consensus 2 ~i~~Ng~~~~~~~~tl~~Ll~~l~~~~-~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 2 KLFVNGETLQTEATTLALLLAELDYEG-NWLATAVNGELVHKEARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred EEEECCeEEEcCcCcHHHHHHHcCCCC-CeEEEEECCEEcCHHHcCccccCCCCEEEEEEeccCC
Confidence 578888888653333343333211211 11211 1 12457789999999988887644
No 38
>PF10681 Rot1: Chaperone for protein-folding within the ER, fungal; InterPro: IPR019623 This conserved fungal family is an essential molecular chaperone in the endoplasmic reticulum. Molecular chaperones transiently interact with unfolded proteins to inhibit their self-aggregation and to support their folding and/or assembly. Rot1 is a general chaperone with some substrate specificity, its substrates being the structurally unrelated Kre5 Kre6 Big1 Atg22, which are type I, type II, and polytopic membrane proteins. The dependencies of each for Rot1 do not share similarities. However, their folding does require BiP, and one of these proteins was simultaneously associated with both Rot1 and BiP. In addition, Rot1 may cooperate with BiP/Kar2 in the folding of Kre6 [].
Probab=50.79 E-value=27 Score=27.65 Aligned_cols=54 Identities=22% Similarity=0.474 Sum_probs=43.5
Q ss_pred ceeeeeeEEEEecceeeeCCccceeecccccccccCceeeeeeCCCCeEeecCcEEEEeEeeeCCcceEEe
Q psy15502 10 GLVTEERFSIQIAPTKLSGPKPPIFIKHSSRSIHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHD 80 (99)
Q Consensus 10 ~~~~~~~~~~~~~~~~~s~~~~vVrnl~Ggy~lHegPsIPN~~~g~~~~L~eGmV~AIEPF~TtG~g~V~~ 80 (99)
|...|..|.+-=|++..+-|..++.==||.|.+|. +-.+...||+.+|+-.+.+
T Consensus 42 G~~EeA~Yr~~~Np~~p~C~~a~l~wQHGtY~l~~-----------------nGsl~L~P~~~DGrQl~sd 95 (212)
T PF10681_consen 42 GYFEEAQYRVTSNPTNPSCPTAVLIWQHGTYELNS-----------------NGSLTLTPFAVDGRQLVSD 95 (212)
T ss_pred CeeeEEEEEEccCCCCCCCCceEEEEecceEEECC-----------------CCcEEEeecCCCCceeccC
Confidence 66778889999999999999999999999999985 3357778888887766543
No 39
>KOG1942|consensus
Probab=50.47 E-value=5.6 Score=34.01 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=45.2
Q ss_pred ceeeeCCccceeecccccccccCceeeeeeCCCCeEeecCcEEEEeEeeeCCcceEEeCCceeeeeeccC--C-CCCCCC
Q psy15502 23 PTKLSGPKPPIFIKHSSRSIHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFE--A-SYIPLR 99 (99)
Q Consensus 23 ~~~~s~~~~vVrnl~Ggy~lHegPsIPN~~~g~~~~L~eGmV~AIEPF~TtG~g~V~~~~~~~iy~~~~~--~-~~~~~~ 99 (99)
||++|-=+--.+.--|-..+.-+|+| |..-...+.+.|||+-||-= +|.|+..+.|..|+-.++ + +++|||
T Consensus 152 gKtIshv~i~LKtaKgtKqLkLdPsi--yesi~kerv~~GDViYIEaN----sGavKrvGRsda~ateFDLEaeeyVPlP 225 (456)
T KOG1942|consen 152 GKTISHVVIGLKTAKGTKQLKLDPSI--YESIQKERVEVGDVIYIEAN----SGAVKRVGRSDAYATEFDLEAEEYVPLP 225 (456)
T ss_pred CceeeeeEEEEeecCCcceeccChHH--HHHHHHhhhccCcEEEEEec----cchhhcccccccchhhcccccceeecCC
Confidence 34444333333333345556666666 33456678899999988843 667788899999987666 3 377775
No 40
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=50.01 E-value=31 Score=21.02 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=30.6
Q ss_pred EEecceeeeCCcc-ceeecccccccccCceeeee-------eCCCCeEeecCcEEEEeEeeeCC
Q psy15502 19 IQIAPTKLSGPKP-PIFIKHSSRSIHAGKTVPIV-------RGGEGTLMEENEFYAIETFGSTG 74 (99)
Q Consensus 19 ~~~~~~~~s~~~~-vVrnl~Ggy~lHegPsIPN~-------~~g~~~~L~eGmV~AIEPF~TtG 74 (99)
|.+||+..+.+-. -+.+|.-...+.....+--+ ..+....|++||.++|=|++.-|
T Consensus 1 i~iNg~~~~~~~~~tv~~ll~~l~~~~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 1 ITVNGEPVEVEDGLTLAALLESLGLDPRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred CEECCeEEEcCCCCcHHHHHHHcCCCCCeEEEEECCEEcCHHHcCceecCCCCEEEEEEeccCC
Confidence 4678888866543 24444432222211111111 11455689999999988887543
No 41
>KOG2413|consensus
Probab=37.95 E-value=28 Score=31.39 Aligned_cols=42 Identities=14% Similarity=0.053 Sum_probs=31.8
Q ss_pred cccccCceeeeee-CCCCeEeecCcEEEEeEeee-CCcceEEeC
Q psy15502 40 RSIHAGKTVPIVR-GGEGTLMEENEFYAIETFGS-TGKGMVHDD 81 (99)
Q Consensus 40 y~lHegPsIPN~~-~g~~~~L~eGmV~AIEPF~T-tG~g~V~~~ 81 (99)
-..||+|-.=.+. ..++..|+.||++.+||+-- .|...++.+
T Consensus 483 LnVhE~P~~is~r~~~~~~~l~ag~~~s~EPGYY~dg~fGIRie 526 (606)
T KOG2413|consen 483 LNVHEGPIGIGYRPYSSNFPLQAGMVFSIEPGYYKDGEFGIRIE 526 (606)
T ss_pred eEeccCCceeeeeecCCCchhcCceEeccCCcccccCcceEEEe
Confidence 4679999666665 47888999999999999876 455445444
No 42
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=37.84 E-value=44 Score=21.16 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=32.0
Q ss_pred EEEecceeeeCCcc-ceeecccccccccCceeeee-eCCCCeEeecCcEE
Q psy15502 18 SIQIAPTKLSGPKP-PIFIKHSSRSIHAGKTVPIV-RGGEGTLMEENEFY 65 (99)
Q Consensus 18 ~~~~~~~~~s~~~~-vVrnl~Ggy~lHegPsIPN~-~~g~~~~L~eGmV~ 65 (99)
.|-+||+..+-... -+.+|...+.-+++..|-|= .-..+..|+|||-+
T Consensus 2 ~I~vN~k~~~~~~~~tl~~lr~~~k~~~DI~I~NGF~~~~d~~L~e~D~v 51 (57)
T PF14453_consen 2 KIKVNEKEIETEENTTLFELRKESKPDADIVILNGFPTKEDIELKEGDEV 51 (57)
T ss_pred EEEECCEEEEcCCCcCHHHHHHhhCCCCCEEEEcCcccCCccccCCCCEE
Confidence 46788988865553 34555556666677666654 33688899999944
No 43
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=31.43 E-value=39 Score=22.58 Aligned_cols=20 Identities=5% Similarity=-0.077 Sum_probs=16.4
Q ss_pred CCCeEeecCcEEEEeEeeeC
Q psy15502 54 GEGTLMEENEFYAIETFGST 73 (99)
Q Consensus 54 g~~~~L~eGmV~AIEPF~Tt 73 (99)
....+|.|||++.+||.--+
T Consensus 42 ~~~i~I~~GD~V~Ve~~~~d 61 (75)
T COG0361 42 KNRIRILPGDVVLVELSPYD 61 (75)
T ss_pred heeEEeCCCCEEEEEecccc
Confidence 44789999999999998543
No 44
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=28.82 E-value=2e+02 Score=19.81 Aligned_cols=16 Identities=6% Similarity=-0.081 Sum_probs=13.8
Q ss_pred CeEeecCcEEEEeEee
Q psy15502 56 GTLMEENEFYAIETFG 71 (99)
Q Consensus 56 ~~~L~eGmV~AIEPF~ 71 (99)
..++.+||.+.+|+.-
T Consensus 44 rIrIl~GD~V~VE~sp 59 (87)
T PRK12442 44 RIRILAGDRVTLELSP 59 (87)
T ss_pred eEEecCCCEEEEEECc
Confidence 5689999999999874
No 45
>PF01000 RNA_pol_A_bac: RNA polymerase Rpb3/RpoA insert domain; InterPro: IPR011262 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase (RNAP) II, which is responsible for all mRNA synthesis in eukaryotes, consists of 12 subunits. Subunits Rpb3 and Rpb11 form a heterodimer that is functionally analogous to the archaeal RNAP D/L heterodimer, and to the prokaryotic RNAP alpha (RpoA) subunit homodimer. In each case, they play a key role in RNAP assembly by forming a platform on which the catalytic subunits (eukaryotic Rpb1/Rpb2, and prokaryotic beta/beta') can interact []. The dimerisation domains differ between the different subunit families. In eukaryotic Rpb3, archaeal D and bacterial RpoA subunits (IPR011263 from INTERPRO), the dimerisation domain is comprised of a central insert domain, which interrupts an Rpb11-like domain (IPR009025 from INTERPRO), dividing it into two halves []. In eukaryotic Rpb11 and archaeal L subunits, the insert domain is lacking, leaving the Rpb11-like domain intact and contiguous.; GO: 0003899 DNA-directed RNA polymerase activity, 0046983 protein dimerization activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_O 1HQM_B 1YNJ_A 1YNN_A 1I6V_A 2GHO_A 3GTK_C 1TWH_C 3HOV_C 3S17_C ....
Probab=28.09 E-value=62 Score=21.66 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.8
Q ss_pred eEeecCcEEEEeEeeeCCcceEE
Q psy15502 57 TLMEENEFYAIETFGSTGKGMVH 79 (99)
Q Consensus 57 ~~L~eGmV~AIEPF~TtG~g~V~ 79 (99)
.+|.+|+.+-+|-.+..|.|++.
T Consensus 86 ~tl~~~~~l~~e~~i~~G~Gy~~ 108 (112)
T PF01000_consen 86 ATLSEGQKLEMELYIEKGRGYVH 108 (112)
T ss_dssp EEEESSTEEEEEEEEEEEESEEC
T ss_pred EEECCCCEEEEEEEEECCCcccc
Confidence 47899999999999999999974
No 46
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=25.38 E-value=39 Score=22.97 Aligned_cols=37 Identities=8% Similarity=0.271 Sum_probs=31.8
Q ss_pred eeeeeeEEEEecceeeeCCccceeeccc-ccccccCce
Q psy15502 11 LVTEERFSIQIAPTKLSGPKPPIFIKHS-SRSIHAGKT 47 (99)
Q Consensus 11 ~~~~~~~~~~~~~~~~s~~~~vVrnl~G-gy~lHegPs 47 (99)
++.+..|.|.+++..+.=.++++.+.++ .+.+|.+.+
T Consensus 14 i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs 51 (88)
T PF07292_consen 14 ILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVS 51 (88)
T ss_pred HHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEccc
Confidence 5678899999999999888888888887 888998873
No 47
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=23.07 E-value=98 Score=23.04 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=15.3
Q ss_pred CCCCeEeecCcEEEEeEeeeCCcceEEe
Q psy15502 53 GGEGTLMEENEFYAIETFGSTGKGMVHD 80 (99)
Q Consensus 53 ~g~~~~L~eGmV~AIEPF~TtG~g~V~~ 80 (99)
...|.++++|+.+| .++|++|.|+-
T Consensus 96 ~~~G~rV~~gd~lA---~v~T~KGeVR~ 120 (150)
T PF09891_consen 96 VDEGDRVRKGDRLA---YVTTRKGEVRY 120 (150)
T ss_dssp S-TSEEE-TT-EEE---EEE-TTS-EEE
T ss_pred cccCcEeccCcEEE---EEEecCcceEE
Confidence 35667889999887 68899988753
No 48
>PF03506 Flu_C_NS1: Influenza C non-structural protein (NS1); InterPro: IPR005187 The influenza C virus genome consists of seven single-stranded RNA segments. The shortest RNA segment encodes a 286 amino acid non-structural protein NS1 []. This protein contains 6 conserved cysteines that may be functionally important, perhaps binding to a metal ion.
Probab=22.43 E-value=44 Score=24.88 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=29.8
Q ss_pred eeeeeeEEEEecceeeeCCccce-eecc--cccccccCceeeeee
Q psy15502 11 LVTEERFSIQIAPTKLSGPKPPI-FIKH--SSRSIHAGKTVPIVR 52 (99)
Q Consensus 11 ~~~~~~~~~~~~~~~~s~~~~vV-rnl~--Ggy~lHegPsIPN~~ 52 (99)
-+||..-+||..||++ |+--| .|+. |+.-+--.|-|||++
T Consensus 14 sitmtpasvevkgkkf--pidfvpsniapigqnpiylspcipnfd 56 (162)
T PF03506_consen 14 SITMTPASVEVKGKKF--PIDFVPSNIAPIGQNPIYLSPCIPNFD 56 (162)
T ss_pred CCccCccceeecCCcC--CcccCccccccCCCCCeeecccccCCC
Confidence 3577788999999998 66433 4444 477788889999994
No 49
>PF07305 DUF1454: Protein of unknown function (DUF1454); InterPro: IPR009918 This family consists of several Enterobacterial sequences of around 200 residues in length, which are often known as YiiQ proteins. The function of this family is unknown.
Probab=21.31 E-value=53 Score=25.82 Aligned_cols=9 Identities=22% Similarity=0.397 Sum_probs=8.5
Q ss_pred CcEEEEeEe
Q psy15502 62 NEFYAIETF 70 (99)
Q Consensus 62 GmV~AIEPF 70 (99)
|.+|||||.
T Consensus 179 glTFAVEPI 187 (200)
T PF07305_consen 179 GLTFAVEPI 187 (200)
T ss_pred eeEEEeeee
Confidence 899999997
Done!