RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15502
         (99 letters)



>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
          Length = 470

 Score =  115 bits (289), Expect = 7e-32
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 42  IHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFEASYIPLR 99
           IH GK+VPIV+GGE T MEE E +AIETF STG+G V++D++ SHYMK+  A ++PLR
Sbjct: 330 IHGGKSVPIVKGGENTRMEEGELFAIETFASTGRGYVNEDLECSHYMKDPGAEFVPLR 387


>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
           known as methionyl aminopeptidase and peptidase M.
           Catalyzes release of N-terminal amino acids,
           preferentially methionine, from peptides and arylamides.
          Length = 291

 Score = 95.8 bits (239), Expect = 2e-25
 Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 3/58 (5%)

Query: 42  IHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFEASYIPLR 99
           +HAGK++P V+GGEGT +EE + YAIE F +TGKG VHD  + S YM N +    PLR
Sbjct: 158 LHAGKSIPNVKGGEGTRLEEGDVYAIEPFATTGKGYVHDGPECSIYMLNRDK---PLR 212


>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
           Methionine aminopeptidase (map) is a cobalt-binding
           enzyme. Bacterial and organellar examples (type I)
           differ from eukaroytic and archaeal (type II) examples
           in lacking a region of approximately 60 amino acids
           between the 4th and 5th cobalt-binding ligands. The role
           of this protein in general is to produce the mature
           amino end of cytosolic proteins by removing the
           N-terminal methionine. This model describes type II,
           among which the eukaryotic members typically have an
           N-terminal extension not present in archaeal members. It
           can act cotranslationally. The enzyme from rat has been
           shown to associate with translation initiation factor 2
           (IF-2) and may have a role in translational regulation
           [Protein fate, Protein modification and repair].
          Length = 295

 Score = 54.8 bits (132), Expect = 2e-10
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 42  IHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHY 87
           +H GK++P V+  + T +EE +  AIE F + G G V D  +VS Y
Sbjct: 162 LHGGKSIPNVKERDTTKLEEGDVVAIEPFATDGVGYVTDGGEVSIY 207


>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
          Length = 291

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 42  IHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYM 88
           +HAG ++P    G G  +EE + YAIE F + G+G V +  +V  Y 
Sbjct: 159 LHAGPSIPNYDEGGGVKLEEGDVYAIEPFATDGEGKVVEGPEVEIYS 205


>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
           structure and biogenesis].
          Length = 255

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 34  FIKHS-SRSIHAGKTVPIV-RGGEGTLMEENEFYAIETFGSTGKGMVHDDMD 83
              H   R +H   ++P   + G G  ++E   +AIE   +TG G V +   
Sbjct: 168 LTGHGIGRELHEEPSIPNYGKDGTGVRLKEGMVFAIEPMINTGSGEVVEGPS 219


>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein.  Proteins
           identified by This model have been identified in a
           number of species as a nuclear (but not nucleolar)
           protein with a cell cycle dependence. Various names
           given to members of this family have included cell cycle
           protein p38-2G4, DNA-binding protein GBP16, and
           proliferation-associated protein 1. This protein is
           closely related to methionine aminopeptidase, a
           cobolt-binding protein [Unknown function, General].
          Length = 389

 Score = 27.9 bits (62), Expect = 0.73
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 60  EENEFYAIETFGSTGKGMVHD-DMDVSHYMKNFEASY 95
           EENE YA++   STG+G   D D   + Y ++   +Y
Sbjct: 220 EENEVYAVDILVSTGEGKAKDADQRTTIYKRDPSKTY 256


>gnl|CDD|202693 pfam03583, LIP, Secretory lipase.  These lipases are expressed and
           secreted during the infection cycle of these pathogens.
           In particular, C. albicans has a large number of
           different lipases, possibly reflecting broad lipolytic
           activity, which may contribute to the persistence and
           virulence of C. albicans in human tissue.
          Length = 291

 Score = 27.0 bits (60), Expect = 1.5
 Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 6/44 (13%)

Query: 2   FLVTKSWTGLVTEERFSIQIAPTKLSG------PKPPIFIKHSS 39
               +    L+ +   +  +    L        P+ P+F+ H +
Sbjct: 186 NRDFEKGWDLLEDPVINKTLEDNGLLVYDKSAVPQIPVFVYHGT 229


>gnl|CDD|131358 TIGR02305, HpaG-N-term, 4-hydroxyphenylacetate degradation
          bifunctional isomerase/decarboxylase, N-terminal
          subunit.  This model represents one of two
          subunits/domains of the bifunctional
          isomerase/decarboxylase involved in
          4-hydroxyphenylacetate degradation. In E. coli and some
          other species this enzyme is encoded by a single
          polypeptide containing both this domain and the closely
          related C-terminal domain (TIGR02303). In other species
          such as Pasteurella multocida these domains are found
          as two separate proteins (usually as tandem genes).
          Together, these domains carry out the decarboxylation
          of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to
          2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the
          subsequent isomerization to 2-oxohept-3-ene-1,7-dioate
          (OHED).
          Length = 205

 Score = 26.2 bits (58), Expect = 3.0
 Identities = 13/60 (21%), Positives = 25/60 (41%)

Query: 1  MFLVTKSWTGLVTEERFSIQIAPTKLSGPKPPIFIKHSSRSIHAGKTVPIVRGGEGTLME 60
          +F V  ++   +   + + Q AP K     P ++IK  +     G+ +P+  G E     
Sbjct: 3  VFGVALNYREQLDRLQEAFQQAPYKAPPKTPVLYIKPRNTHNGCGQPIPLPAGVEKLRSG 62


>gnl|CDD|223280 COG0202, RpoA, DNA-directed RNA polymerase, alpha subunit/40 kD
           subunit [Transcription].
          Length = 317

 Score = 26.2 bits (58), Expect = 3.3
 Identities = 11/35 (31%), Positives = 13/35 (37%)

Query: 38  SSRSIHAGKTVPIVRGGEGTLMEENEFYAIETFGS 72
           S RS +  K   I   GE     E E   +E  G 
Sbjct: 253 SVRSYNCLKREGIETIGELVQRTEEELLKVENLGK 287


>gnl|CDD|237295 PRK13187, PRK13187, UDP-3-O-[3-hydroxymyristoyl]
           N-acetylglucosamine deacetylase; Reviewed.
          Length = 304

 Score = 26.0 bits (57), Expect = 4.2
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 7/48 (14%)

Query: 8   WTGLVTEERFSIQIAPTKLSGPKPPIFIKHSSRSIHAG--KTVPIVRG 53
           W G +T   F+ +IAP++  G      +K +  +I AG  + VPI+RG
Sbjct: 184 WDGALTPAAFATEIAPSRSYGR-----VKWAVPAILAGYLRGVPILRG 226


>gnl|CDD|177408 PHA02579, 7, baseplate wedge subunit; Provisional.
          Length = 1030

 Score = 25.1 bits (55), Expect = 8.4
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 5   TKSWT---GLVTEERFSIQIAPTKLSGPKPPIFIKHS 38
            K+WT   G   EER  I+   T +S     +FI  S
Sbjct: 411 GKTWTRVFGNTEEERRRIEHGYTNMSTDGEEVFISSS 447


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0693    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,969,727
Number of extensions: 398500
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 13
Length of query: 99
Length of database: 10,937,602
Length adjustment: 65
Effective length of query: 34
Effective length of database: 8,054,592
Effective search space: 273856128
Effective search space used: 273856128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)