RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15502
         (99 letters)



>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
           {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
           1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
           1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
           2ga2_A* 2oaz_A*
          Length = 478

 Score = 85.4 bits (211), Expect = 3e-21
 Identities = 44/58 (75%), Positives = 51/58 (87%)

Query: 42  IHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFEASYIPLR 99
           IHAGKTVPIV+GGE T MEE E YAIETFGSTGKG+VHDDM+ SHYMKNF+  ++P+R
Sbjct: 338 IHAGKTVPIVKGGEATRMEEGEVYAIETFGSTGKGVVHDDMECSHYMKNFDVGHVPIR 395


>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
           protein structure initiative; 2.18A {Encephalitozoon
           cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
          Length = 360

 Score = 78.7 bits (194), Expect = 5e-19
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 41  SIHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFEASYIPLR 99
            IH G ++P V   + T ++ + FYA+ETF +TGKG + D    SH++ N   S   L 
Sbjct: 218 RIHGGISIPAVNNRDTTRIKGDSFYAVETFATTGKGSIDDRPPCSHFVLNTYKSR-KLF 275


>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
           furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
           1xgo_A 1wkm_A 2dfi_A
          Length = 295

 Score = 75.4 bits (186), Expect = 5e-18
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 42  IHAGKTVP-IVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFEASYIPLR 99
           +HAG ++P I R  +  +++E + +AIE F + G G V +      YM   +    P+R
Sbjct: 160 LHAGISIPNIYRPHDNYVLKEGDVFAIEPFATIGAGQVIEVPPTLIYMYVRDV---PVR 215


>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
           aminopeptidase, PITA-bread, transcri; 1.60A {Homo
           sapiens} PDB: 2v6c_A
          Length = 401

 Score = 73.3 bits (180), Expect = 6e-17
 Identities = 13/63 (20%), Positives = 24/63 (38%)

Query: 37  HSSRSIHAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDDMDVSHYMKNFEASYI 96
              ++I    T    +  E    E +E YA++   S+G+G   D    +   K   +   
Sbjct: 203 DGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQRTTIYKRDPSKQY 262

Query: 97  PLR 99
            L+
Sbjct: 263 GLK 265


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.9 bits (61), Expect = 0.57
 Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 3/37 (8%)

Query: 34  FIKHSSRSIHAGKTVPIVRGGEGTLMEENEFYAIETF 70
           F+     ++   K   ++R     LM E+E    E  
Sbjct: 551 FLPKIEENLICSKYTDLLRIA---LMAEDEAIFEEAH 584


>2ksg_A Dermcidin; antibiotic peptide, peptide-membrane interaction,
          amphipathic alpha helix, antibiotic; NMR {Homo sapiens}
          Length = 48

 Score = 25.7 bits (56), Expect = 0.97
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)

Query: 53 GGEGTLMEENEFYAIETFGSTGKGMVHDDMDV 84
          GG G L ++    A+E   S GKG VHD  DV
Sbjct: 16 GGLGKLGKD----AVEDLESVGKGAVHDVKDV 43


>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural
          genomics, PSI-2, protein structure initiative; HET:
          TAR; 2.10A {Oleispira antarctica} PDB: 3v77_A*
          Length = 224

 Score = 24.0 bits (53), Expect = 9.5
 Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)

Query: 29 PKPP-IFIKHSSRSIHAGKTVPI 50
          P  P +FIK +S ++  G    I
Sbjct: 37 PSSPILFIKPASSAVPFGPVFSI 59


>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
           cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
           2.95A {Streptococcus agalactiae serogroup V}
          Length = 750

 Score = 24.5 bits (53), Expect = 9.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 56  GTLMEENEFYA 66
           G L+ E EFY+
Sbjct: 248 GQLIAEKEFYS 258


>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
           thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
           a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
           PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
           1jdb_B* 1kee_A* 1t36_A*
          Length = 1073

 Score = 24.4 bits (54), Expect = 9.8
 Identities = 6/19 (31%), Positives = 11/19 (57%), Gaps = 2/19 (10%)

Query: 74  GKGM--VHDDMDVSHYMKN 90
           G+ M  V+D+ D+  Y + 
Sbjct: 722 GRAMEIVYDEADLRRYFQT 740


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0823    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,471,297
Number of extensions: 73263
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 14
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.2 bits)