RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15502
         (99 letters)



>d1b6aa1 a.4.5.25 (A:375-448) Methionine aminopeptidase, insert
          domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 74

 Score = 42.8 bits (101), Expect = 1e-07
 Identities = 13/21 (61%), Positives = 18/21 (85%)

Query: 79 HDDMDVSHYMKNFEASYIPLR 99
          HDDM+ SHYMKNF+  ++P+R
Sbjct: 1  HDDMECSHYMKNFDVGHVPIR 21


>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 295

 Score = 36.8 bits (84), Expect = 1e-04
 Identities = 30/39 (76%), Positives = 32/39 (82%)

Query: 43  HAGKTVPIVRGGEGTLMEENEFYAIETFGSTGKGMVHDD 81
           HAGKTVPIV+GGE T MEE E YAIETFGSTGKG+V   
Sbjct: 230 HAGKTVPIVKGGEATRMEEGEVYAIETFGSTGKGVVDIK 268


>d1ccwb_ c.1.19.2 (B:) Glutamate mutase, large subunit {Clostridium
           cochlearium [TaxId: 1494]}
          Length = 483

 Score = 27.5 bits (61), Expect = 0.29
 Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 3/67 (4%)

Query: 27  SGPKPPIFIKHSSRSIHAGKTVPIVRGGEGTLMEENEFY-AIETFGSTGKGMVHDDMDVS 85
             P    F +    +   G T+   R G   L E  E    ++  G          +D  
Sbjct: 41  KIPAEKNFAEKLVLAKKKGITMAQPRAGVALLDEHIELLRYLQDEGGADFLPST--IDAY 98

Query: 86  HYMKNFE 92
                ++
Sbjct: 99  TRQNRYD 105


>d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 225

 Score = 26.3 bits (56), Expect = 0.67
 Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 5/47 (10%)

Query: 29  PKPPIFIKHSSRSIHAGK-----TVPIVRGGEGTLMEENEFYAIETF 70
               +F+  +   + A       T    R G   + +  ++   + F
Sbjct: 176 ASEVLFLSDNPLELDAAAGVGIATGLASRPGNAPVPDGQKYQVYKNF 222


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0374    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 359,673
Number of extensions: 13847
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 5
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.8 bits)