Query psy15503
Match_columns 157
No_of_seqs 148 out of 1113
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 22:54:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4193|consensus 100.0 3.9E-36 8.4E-41 252.0 10.9 155 1-157 397-556 (610)
2 PF00002 7tm_2: 7 transmembran 100.0 3.3E-35 7.2E-40 223.3 0.0 154 1-157 83-238 (242)
3 KOG4564|consensus 100.0 2.6E-33 5.6E-38 227.4 9.6 152 2-157 241-394 (473)
4 KOG4289|consensus 99.9 5.6E-22 1.2E-26 173.4 6.1 142 1-157 2237-2379(2531)
5 PF05462 Dicty_CAR: Slime mold 99.5 1.4E-14 3.1E-19 113.6 1.4 130 2-134 87-220 (303)
6 PF02101 Ocular_alb: Ocular al 98.7 1.5E-08 3.1E-13 80.8 3.3 152 1-157 127-302 (405)
7 PF01534 Frizzled: Frizzled/Sm 97.8 1.5E-05 3.3E-10 63.4 3.4 96 2-97 106-207 (328)
8 PF11710 Git3: G protein-coupl 96.9 0.00032 6.9E-09 52.3 1.1 98 3-100 87-199 (201)
9 PF02076 STE3: Pheromone A rec 93.6 0.051 1.1E-06 42.6 2.2 67 33-99 107-178 (283)
10 PF00001 7tm_1: 7 transmembran 92.5 0.065 1.4E-06 39.4 1.4 123 4-130 71-216 (257)
11 PF10320 7TM_GPCR_Srsx: Serpen 84.6 0.44 9.6E-06 36.6 1.0 26 108-133 179-204 (257)
12 PF10323 7TM_GPCR_Srv: Serpent 68.3 6 0.00013 30.8 3.1 33 29-61 119-151 (283)
13 PF10292 7TM_GPCR_Srab: Serpen 51.6 35 0.00076 27.0 4.9 72 60-131 169-245 (324)
14 PHA03087 G protein-coupled che 49.3 28 0.00062 27.2 4.0 19 112-130 240-258 (335)
15 PHA03049 IMV membrane protein; 49.0 48 0.001 20.1 3.9 27 78-104 5-31 (68)
16 PF10328 7TM_GPCR_Srx: Serpent 46.8 41 0.00089 25.7 4.5 33 32-64 113-147 (274)
17 KOG4219|consensus 46.5 1.7E+02 0.0038 24.4 10.8 126 3-130 121-275 (423)
18 PHA02902 putative IMV membrane 38.7 90 0.002 18.9 4.1 23 78-100 6-28 (70)
19 PHA02834 chemokine receptor-li 36.5 6.3 0.00014 31.1 -1.5 18 113-130 226-243 (323)
20 PF10328 7TM_GPCR_Srx: Serpent 33.8 82 0.0018 24.0 4.3 18 115-132 209-226 (274)
21 KOG3577|consensus 31.9 26 0.00056 30.3 1.3 58 28-85 350-411 (556)
22 PF05961 Chordopox_A13L: Chord 30.6 1.3E+02 0.0028 18.3 3.9 26 78-103 5-30 (68)
23 PHA03234 DNA packaging protein 28.6 37 0.0008 27.1 1.7 20 111-130 232-251 (338)
24 CHL00019 atpF ATP synthase CF0 26.3 62 0.0013 23.5 2.4 28 70-97 19-46 (184)
25 PF15102 TMEM154: TMEM154 prot 25.8 36 0.00078 24.1 1.0 20 68-87 56-76 (146)
26 PRK09400 secE preprotein trans 24.1 81 0.0018 18.8 2.2 23 105-127 26-48 (61)
27 PF02009 Rifin_STEVOR: Rifin/s 22.3 1.5E+02 0.0032 23.6 3.9 9 107-115 289-297 (299)
28 PF06796 NapE: Periplasmic nit 22.0 93 0.002 18.3 2.1 24 108-131 15-38 (56)
29 TIGR02972 TMAO_torE trimethyla 21.4 94 0.002 17.5 1.9 24 108-131 7-30 (47)
No 1
>KOG4193|consensus
Probab=100.00 E-value=3.9e-36 Score=252.00 Aligned_cols=155 Identities=30% Similarity=0.494 Sum_probs=133.5
Q ss_pred CchhhHHHhHHHHHHHHHHHHhhccCCcch-hhhhhhhcccceeeeEEeeeeeccc---cCCcccccccc-ccceeeeeh
Q psy15503 1 MVANYFWMFCEGLHLHLALVVVFVKDTSLM-RWFHFIGWVVPLIITSVYAYVRHTS---LEDIKYCWMND-AHSRWILTV 75 (157)
Q Consensus 1 ~Lasf~Wm~ve~~~l~~~lv~~~~~~~~~~-~~~~~~gwg~P~~iv~i~~~~~~~~---y~~~~~CWl~~-~~~~~~f~~ 75 (157)
+||+|+||++||+|+|+.+++++...++++ ..|+++|||+|+++|+++++++.+. |+.+++||+++ ++.+|.|+|
T Consensus 397 ~LaaF~Wm~leg~hl~~~~v~vf~~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~~~~~~~~F~G 476 (610)
T KOG4193|consen 397 FLAAFFWMLLEGFHLYLLLVEVFRSRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDTQNGFIWSFLG 476 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCceEEecCCceEEEEeh
Confidence 589999999999999999999986655544 4565999999999999999999988 88899999996 689999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCChhhHHHHHHHHhchhhhhcchhccccccccCCCchHHHHHHHHHHHhc
Q psy15503 76 PVCLSILVNLAILMNVLRVLLTKLHSNSTNPAPIGIRKAARAALILVPLFGLHHILLPFRPEPKSPWEMVYDVFSAVLVS 155 (157)
Q Consensus 76 Pv~~ill~N~vif~~v~~~l~~k~~~~~~~~~~~~~~~~~r~~~~L~~llG~tW~~g~~~~~~~~~~~~~~~ylF~ilns 155 (157)
|+++++++|+++|+.+++++.+++...++..++.+..+..|.++.|+++||+||+||++...++ ...++.|+|+|+|+
T Consensus 477 Pv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~~~~~~~~~~~~~~l~L~~lLGlTW~fgi~s~~~~--~~~v~~YlFti~Na 554 (610)
T KOG4193|consen 477 PVTLIILVNIVMFVVTLKKLLRRLSKLQPIASKLENISLIRSALALLFLLGLTWIFGIFSWLPG--TSVVFAYLFTIFNA 554 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 9999999999999999999887665444333333333678999999999999999999987643 58899999999999
Q ss_pred CC
Q psy15503 156 SQ 157 (157)
Q Consensus 156 lQ 157 (157)
+|
T Consensus 555 lQ 556 (610)
T KOG4193|consen 555 LQ 556 (610)
T ss_pred hh
Confidence 99
No 2
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=100.00 E-value=3.3e-35 Score=223.29 Aligned_cols=154 Identities=31% Similarity=0.564 Sum_probs=0.0
Q ss_pred CchhhHHHhHHHHHHHHHHHHhhccCCcchhhhhhhhcccceeeeEEeeeeeccccCCcccccccc-ccceeeeehhHHH
Q psy15503 1 MVANYFWMFCEGLHLHLALVVVFVKDTSLMRWFHFIGWVVPLIITSVYAYVRHTSLEDIKYCWMND-AHSRWILTVPVCL 79 (157)
Q Consensus 1 ~Lasf~Wm~ve~~~l~~~lv~~~~~~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~~~~CWl~~-~~~~~~f~~Pv~~ 79 (157)
.+++|+||++||+|+|+.+++..+++++++++|+++|||+|+++++++++.+.++|++ +.||+++ ++..|+|.+|+++
T Consensus 83 ~la~f~Wm~~~~~~l~~~~~~~~~~~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~-~~CWl~~~~~~~~~f~~P~~~ 161 (242)
T PF00002_consen 83 FLASFFWMLVEAFYLYRLLVKVFNSSRRRFWWYYLIGWGIPALIVVISVAVNSDGYGN-DNCWLSNDWGFIWAFVGPVLI 161 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhheeEEEeecccchhhheeeeeeecCcceeeeeeeeeccccccc-ccccccCCCceEEEEEecccc
Confidence 4789999999999999999998777778889999999999999999999999777766 6899996 5899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCChhhHH-HHHHHHhchhhhhcchhccccccccCCCchHHHHHHHHHHHhcCC
Q psy15503 80 SILVNLAILMNVLRVLLTKLHSNSTNPAPIGIR-KAARAALILVPLFGLHHILLPFRPEPKSPWEMVYDVFSAVLVSSQ 157 (157)
Q Consensus 80 ill~N~vif~~v~~~l~~k~~~~~~~~~~~~~~-~~~r~~~~L~~llG~tW~~g~~~~~~~~~~~~~~~ylF~ilnslQ 157 (157)
++++|+++++.+++++.++.+++++ +++++.+ +..|+.+.|+|++|++|+++++...++ ..+.+++|+|+++||+|
T Consensus 162 ~l~in~vi~~~v~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~L~~llg~~w~~~~~~~~~~-~~~~~~~~lf~i~nslQ 238 (242)
T PF00002_consen 162 ILLINIVIFILVLRVLVRKSRSSDK-SEKKKRRKKILRASLILLPLLGITWLFGILAVSDS-VDSLVFQYLFAILNSLQ 238 (242)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred eecccchhheeeEEeehhhhhhhhh-hhccchhhhHHHHHHHHHHHHHHHheeeeeeeccc-chHHHHHHHHHHHHcCc
Confidence 9999999999999999887664333 3444444 489999999999999999998876542 35789999999999999
No 3
>KOG4564|consensus
Probab=100.00 E-value=2.6e-33 Score=227.39 Aligned_cols=152 Identities=41% Similarity=0.761 Sum_probs=138.4
Q ss_pred chhhHHHhHHHHHHHHHHHHhhccCCcchhhhhhhhcccceeeeEEeeeeeccccCCcccccccc-c-cceeeeehhHHH
Q psy15503 2 VANYFWMFCEGLHLHLALVVVFVKDTSLMRWFHFIGWVVPLIITSVYAYVRHTSLEDIKYCWMND-A-HSRWILTVPVCL 79 (157)
Q Consensus 2 Lasf~Wm~ve~~~l~~~lv~~~~~~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~~~~CWl~~-~-~~~~~f~~Pv~~ 79 (157)
+|+|+||++||+|||.+++..+.+++++++.|.++|||+|+++|++++.++. |.+|..||..+ + +..|+.-||+.+
T Consensus 241 ~aNf~WmlvEGlYLhtLlv~~~~ser~~~~~y~~iGWG~P~v~v~~Wai~r~--~~~d~~CW~~~~~~~~~WIi~gPi~~ 318 (473)
T KOG4564|consen 241 LANFFWMLVEGLYLHTLLVVAFFSERRYFWLYLLIGWGVPAVFVVVWAIVRL--YLEDTGCWDSNDTGHIWWIIRGPILL 318 (473)
T ss_pred HHHHHHHHHHHHHHHHhhheeeccCccHHHHHHHHhhCCcHHHhhhHHhHhe--eeccccccccCCCcceEEEEeccHHH
Confidence 6899999999999999999999999999999999999999999999999984 45667899985 3 889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCChhhHHHHHHHHhchhhhhcchhccccccccCCCchHHHHHHHHHHHhcCC
Q psy15503 80 SILVNLAILMNVLRVLLTKLHSNSTNPAPIGIRKAARAALILVPLFGLHHILLPFRPEPKSPWEMVYDVFSAVLVSSQ 157 (157)
Q Consensus 80 ill~N~vif~~v~~~l~~k~~~~~~~~~~~~~~~~~r~~~~L~~llG~tW~~g~~~~~~~~~~~~~~~ylF~ilnslQ 157 (157)
.+++|+++|+.++|++.+|+|++++. |.+++||.+|+++.|+||||++.+..++.++++ ....+++|.-..++|+|
T Consensus 319 ai~vNf~flinIvrILv~KLr~~~~~-~~~~y~K~vKaTLvLIPLfGI~~ilf~~~P~~~-~~~~v~~~~~~~L~SfQ 394 (473)
T KOG4564|consen 319 AILVNFIFLINIVRILVTKLRASNAS-ETDQYRKLVKATLVLIPLFGIHYILFAFRPDED-TLREVYLYFELFLGSFQ 394 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccc-chHHHHHHHHHHHHHHHHcCCeeEEEEecCchH-HHHHHHHHHHHHHHhcc
Confidence 99999999999999999999988754 567799999999999999999999888887654 56789999999999999
No 4
>KOG4289|consensus
Probab=99.85 E-value=5.6e-22 Score=173.37 Aligned_cols=142 Identities=25% Similarity=0.456 Sum_probs=120.0
Q ss_pred CchhhHHHhHHHHHHHHHHHHhhccCCcchhhhhhhhcccceeeeEEeeeeeccccCCccccccc-cccceeeeehhHHH
Q psy15503 1 MVANYFWMFCEGLHLHLALVVVFVKDTSLMRWFHFIGWVVPLIITSVYAYVRHTSLEDIKYCWMN-DAHSRWILTVPVCL 79 (157)
Q Consensus 1 ~Lasf~Wm~ve~~~l~~~lv~~~~~~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~~~~CWl~-~~~~~~~f~~Pv~~ 79 (157)
+++.|.|.++||+|+||+++. +.++..++.|+++|||+|+++.+.+++++ +.||++ +..++|.|.+|+++
T Consensus 2237 ~~stFaWlfl~gLhlYRml~e--~v~tg~mrfy~~vGwgvPa~itglavgld-------DfCwlS~h~~LiWsfagPigl 2307 (2531)
T KOG4289|consen 2237 YLSTFAWLFLEGLHLYRMLTE--NVDTGPMRFYYLVGWGVPALITGLAVGLD-------DFCWLSPHDTLIWSFAGPIGL 2307 (2531)
T ss_pred HhhhHHHHHHHHHHHHHHHhc--cCCCCceeEEEEeecchhhheeeeeeccc-------ceeecccchheeeeeccccee
Confidence 478999999999999999999 45677899999999999999999988875 889999 57999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCChhhHHHHHHHHhchhhhhcchhccccccccCCCchHHHHHHHHHHHhcCC
Q psy15503 80 SILVNLAILMNVLRVLLTKLHSNSTNPAPIGIRKAARAALILVPLFGLHHILLPFRPEPKSPWEMVYDVFSAVLVSSQ 157 (157)
Q Consensus 80 ill~N~vif~~v~~~l~~k~~~~~~~~~~~~~~~~~r~~~~L~~llG~tW~~g~~~~~~~~~~~~~~~ylF~ilnslQ 157 (157)
.++.|...++...++-.+|++..- .++..-+.++..+.++.++|.||++|+.+..++ ...|.|+|+.++.+|
T Consensus 2308 ~i~ms~~~~~lsa~vSc~~k~~~f---~kK~~v~~lq~~fl~llllsatwl~~ll~vn~~---~l~fhyl~a~~~~lq 2379 (2531)
T KOG4289|consen 2308 VILMSFYAAALSARVSCHKKYQVF---VKKGNVSVLQHSFLLLLLLSATWLLGLLAVNPD---PLEFHYLFASIIGLQ 2379 (2531)
T ss_pred eehHHHHHHHHHHHHhhhhhheee---eeccchhhhHHHHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhh
Confidence 999999999999987766543221 122223357888889999999999998887544 778999999999988
No 5
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.46 E-value=1.4e-14 Score=113.62 Aligned_cols=130 Identities=15% Similarity=0.387 Sum_probs=84.5
Q ss_pred chhhHHHhHHHHHHHHHHHHhhccCCcchhhhhhhhcccceeeeEEeeeeeccccC-Cccccccccc--c-ceeeeehhH
Q psy15503 2 VANYFWMFCEGLHLHLALVVVFVKDTSLMRWFHFIGWVVPLIITSVYAYVRHTSLE-DIKYCWMNDA--H-SRWILTVPV 77 (157)
Q Consensus 2 Lasf~Wm~ve~~~l~~~lv~~~~~~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~-~~~~CWl~~~--~-~~~~f~~Pv 77 (157)
+|++.|+++.|+++|+.+++..+..++..++|++++||+|++++.+...-+ .|| .++.||++++ . .+..|++|+
T Consensus 87 ~as~lWt~~iA~nly~~~~~~~~~~~k~e~~Y~l~~wGiPli~a~i~l~~~--~~g~~G~WCWI~~~~~~~r~~lfY~Pl 164 (303)
T PF05462_consen 87 LASFLWTLCIAFNLYLTFVKRYDELEKLEKYYHLVCWGIPLIPAVIPLIGN--DYGPAGNWCWIKPEWDVWRFALFYIPL 164 (303)
T ss_pred HHHHHHHHHHHHHhhheeEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCCCCCCceeecCCCcchHHHHHHHHH
Confidence 688999999999999998876544455668899999999999776655433 344 3579999964 3 455799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCChhhHHHHHHHHhchhhhhcchhccccc
Q psy15503 78 CLSILVNLAILMNVLRVLLTKLHSNSTNPAPIGIRKAARAALILVPLFGLHHILLPF 134 (157)
Q Consensus 78 ~~ill~N~vif~~v~~~l~~k~~~~~~~~~~~~~~~~~r~~~~L~~llG~tW~~g~~ 134 (157)
.+++.++.++...+.+...+..+...++.++++.+...|...-. .++=+.|+++.+
T Consensus 165 ~ii~~~~~ilv~i~~~~~y~~~~~~~sd~~~~~~~~~~kL~~Yp-~ifiicw~fa~I 220 (303)
T PF05462_consen 165 WIIIIISAILVGITMRYIYRVIRNGVSDNKDKHLKYQLKLVNYP-LIFIICWIFATI 220 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 98888887766666655444333222222222233334433222 223347887654
No 6
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=98.67 E-value=1.5e-08 Score=80.84 Aligned_cols=152 Identities=14% Similarity=0.235 Sum_probs=101.2
Q ss_pred CchhhHHHhHHHHHHHHHHHHhhccCCcchhhhhhhhcccceeeeEEeeeeeccccCCccccccc-cc--cceeeeehhH
Q psy15503 1 MVANYFWMFCEGLHLHLALVVVFVKDTSLMRWFHFIGWVVPLIITSVYAYVRHTSLEDIKYCWMN-DA--HSRWILTVPV 77 (157)
Q Consensus 1 ~Lasf~Wm~ve~~~l~~~lv~~~~~~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~~~~CWl~-~~--~~~~~f~~Pv 77 (157)
|.|+|.|.++-|+|.|+.+.+. +.+..++.|+.++||.|++.++....+-+. .+.+.|==+ +. +.+..-++|+
T Consensus 127 YsAtfwWtfcYAVDv~Lv~~~~--ag~~~~~lYH~~aWgl~~lL~~~Gl~~Ly~--Ps~~~Ce~~l~~alphYvttY~Pl 202 (405)
T PF02101_consen 127 YSATFWWTFCYAVDVYLVIRRS--AGRSTIWLYHMMAWGLPALLCAEGLAMLYY--PSISRCESGLEHALPHYVTTYIPL 202 (405)
T ss_pred HHHHHHHHHHHHHHHhheeecc--CCCcchhHHHHHHHHHHHHHHHhccceeec--CCHHhhhhhhhhcchhHHHHHHHH
Confidence 4689999999999999877654 234467899999999999988766654332 333456322 22 6788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC---CCChhhHHHHHHH-Hhchhhhhcchhccccc----c----ccCC------
Q psy15503 78 CLSILVNLAILMNVLRVLLTKLHSNST---NPAPIGIRKAARA-ALILVPLFGLHHILLPF----R----PEPK------ 139 (157)
Q Consensus 78 ~~ill~N~vif~~v~~~l~~k~~~~~~---~~~~~~~~~~~r~-~~~L~~llG~tW~~g~~----~----~~~~------ 139 (157)
+++++.|=++|..+.+.+-+.++.+.. ++|++. -+.+|. .+....++=+-|+-..+ . ...+
T Consensus 203 llVlvaNPiLy~~a~~~V~~~lk~r~g~yT~~ER~l-~~~IK~kFf~I~lVF~iCWlpNIINg~LL~~l~~~~~i~~~sl 281 (405)
T PF02101_consen 203 LLVLVANPILYIKAVRAVASLLKGRQGIYTENERRL-GAQIKIKFFKIMLVFYICWLPNIINGSLLFYLEMQPDINGGSL 281 (405)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhhccccccHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHhhcccccccccc
Confidence 999999999999999887765544432 223222 223333 34445666777775321 1 1111
Q ss_pred ---CchHHHHHHHHHHHhcCC
Q psy15503 140 ---SPWEMVYDVFSAVLVSSQ 157 (157)
Q Consensus 140 ---~~~~~~~~ylF~ilnslQ 157 (157)
.......+|+-.|+|-+|
T Consensus 282 ~~~~~a~~t~W~IMaIlNPlQ 302 (405)
T PF02101_consen 282 KQVRNAALTTWFIMAILNPLQ 302 (405)
T ss_pred cchhhHHHHHHHHHHHHhHHH
Confidence 012457789999999887
No 7
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=97.83 E-value=1.5e-05 Score=63.44 Aligned_cols=96 Identities=18% Similarity=0.351 Sum_probs=72.2
Q ss_pred chhhHHHhHHHHHHHHHHHHhhcc--CCcchhhhhhhhcccceeeeEEeeeeec-cccCCcccccccc-c--cceeeeeh
Q psy15503 2 VANYFWMFCEGLHLHLALVVVFVK--DTSLMRWFHFIGWVVPLIITSVYAYVRH-TSLEDIKYCWMND-A--HSRWILTV 75 (157)
Q Consensus 2 Lasf~Wm~ve~~~l~~~lv~~~~~--~~~~~~~~~~~gwg~P~~iv~i~~~~~~-~~y~~~~~CWl~~-~--~~~~~f~~ 75 (157)
+|+..|=.+.++.-|......-.+ -+++-..+++++|++|++.+++.+..+. ++..-.+.|++++ + ......++
T Consensus 106 mAa~~WWviLt~~W~lsa~~kw~~e~i~~~s~yfH~~aW~iP~~~ti~vL~~~~VdgD~ltGiC~Vg~~~~~~l~~fvl~ 185 (328)
T PF01534_consen 106 MAASLWWVILTLTWFLSAGLKWGSEAIEKKSSYFHLVAWGIPAVLTIAVLALRKVDGDELTGICFVGNQNPSALRGFVLA 185 (328)
T ss_pred hHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhhhHHhhhhHHHHHHHHHhcccccccccceeEEeCCCHHHHhHHHHH
Confidence 677788888877777776654432 2355667899999999998877776554 4333457899985 3 46677999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy15503 76 PVCLSILVNLAILMNVLRVLLT 97 (157)
Q Consensus 76 Pv~~ill~N~vif~~v~~~l~~ 97 (157)
|.++.+++...+++.....+.|
T Consensus 186 Pl~i~l~iG~~fL~~G~~~l~r 207 (328)
T PF01534_consen 186 PLFIYLLIGTVFLLAGFVSLFR 207 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999888777665
No 8
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=96.95 E-value=0.00032 Score=52.25 Aligned_cols=98 Identities=18% Similarity=0.362 Sum_probs=66.5
Q ss_pred hhhHHHhHHHHHHHHHHHHhhccC------Cc---chh-hhhhhhcccceeeeEEeeee-eccccCC-ccccccccc---
Q psy15503 3 ANYFWMFCEGLHLHLALVVVFVKD------TS---LMR-WFHFIGWVVPLIITSVYAYV-RHTSLED-IKYCWMNDA--- 67 (157)
Q Consensus 3 asf~Wm~ve~~~l~~~lv~~~~~~------~~---~~~-~~~~~gwg~P~~iv~i~~~~-~~~~y~~-~~~CWl~~~--- 67 (157)
++=.|.++.|+|.|..+.+...+. +. +.+ .-+.+.+++|++.......- +.+.|++ +..||++++
T Consensus 87 ~sd~~ilaIAihT~l~v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~~~~~~Y~~~g~WCWi~~~~~~ 166 (201)
T PF11710_consen 87 ASDLWILAIAIHTFLIVFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFIGLGGPGYGPAGAWCWIPSRYEW 166 (201)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccccccccceEEeeeeeehHHHHHHHHHHHHHHhccccCcccccCcEEEECCCcHH
Confidence 344688999999998887761110 10 111 12344457777766554332 3455654 679999964
Q ss_pred cceeeeehhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy15503 68 HSRWILTVPVCLSILVNLAILMNVLRVLLTKLH 100 (157)
Q Consensus 68 ~~~~~f~~Pv~~ill~N~vif~~v~~~l~~k~~ 100 (157)
..++.-.+|..++....+++++.+...++++.|
T Consensus 167 ~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~ 199 (201)
T PF11710_consen 167 YRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIR 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 468889999999999999999999888776554
No 9
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=93.55 E-value=0.051 Score=42.63 Aligned_cols=67 Identities=10% Similarity=0.170 Sum_probs=55.2
Q ss_pred hhhhhcccceeeeEEeeeeeccccC--Cccccccc-c-c-cceeeeehhHHHHHHHHHHHHHHHHHHHHHHh
Q psy15503 33 FHFIGWVVPLIITSVYAYVRHTSLE--DIKYCWMN-D-A-HSRWILTVPVCLSILVNLAILMNVLRVLLTKL 99 (157)
Q Consensus 33 ~~~~gwg~P~~iv~i~~~~~~~~y~--~~~~CWl~-~-~-~~~~~f~~Pv~~ill~N~vif~~v~~~l~~k~ 99 (157)
=.++|+|.|.+.++....++..-|+ ++..|.-. + + +.+..+..|..+.-++..+.-+.+++.+.+++
T Consensus 107 d~~i~~g~Pil~m~l~yivQ~~Rf~I~e~~GC~~~~~~s~~~~~l~~iwp~i~~lia~vYa~lt~~~f~~rr 178 (283)
T PF02076_consen 107 DLLICFGIPILQMALHYIVQGHRFDIVEDVGCYPAIYPSWPTIFLFIIWPPIFSLIAAVYAILTLRRFIRRR 178 (283)
T ss_pred HHHHHHHHHHHHHHHHHHhcccceeEecccCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999988877665 56789877 3 3 66777889999999999999999998887654
No 10
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=92.51 E-value=0.065 Score=39.39 Aligned_cols=123 Identities=17% Similarity=0.278 Sum_probs=60.7
Q ss_pred hhHHHhHHHHHHHHHHHHhhcc----CCcchhhhhhhhcccceeeeEEeeee-e--ccccCCccccccccc-c-------
Q psy15503 4 NYFWMFCEGLHLHLALVVVFVK----DTSLMRWFHFIGWVVPLIITSVYAYV-R--HTSLEDIKYCWMNDA-H------- 68 (157)
Q Consensus 4 sf~Wm~ve~~~l~~~lv~~~~~----~~~~~~~~~~~gwg~P~~iv~i~~~~-~--~~~y~~~~~CWl~~~-~------- 68 (157)
+..-+...++|=|..+...... ++++........|..+.+........ . ...+++...|+.+.. .
T Consensus 71 s~~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~ 150 (257)
T PF00001_consen 71 SIFSLVAISIDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFI 150 (257)
T ss_dssp HHHHHHHHHHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4445566677777777654321 12334455677788887755444222 1 111122568998742 2
Q ss_pred --ceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCCC------CCChhhHHHHHHHHhchhhhhcchhc
Q psy15503 69 --SRWILTVPVCLSILVNLAILMNVLRVLLTKLHSNST------NPAPIGIRKAARAALILVPLFGLHHI 130 (157)
Q Consensus 69 --~~~~f~~Pv~~ill~N~vif~~v~~~l~~k~~~~~~------~~~~~~~~~~~r~~~~L~~llG~tW~ 130 (157)
....+..|..+++..+ ..+.+.++++.+..+. +.+.++.+|..|..+.+...+-+.|.
T Consensus 151 ~~~~~~~~~p~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~ 216 (257)
T PF00001_consen 151 YFFIVFFILPLIIILICY----IRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWL 216 (257)
T ss_dssp HHHHHHTHHHHHHHHHHH----HHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccceeeeeeec----ccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 1223445555554444 3444444443332221 11122334445555556666666776
No 11
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=84.61 E-value=0.44 Score=36.57 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHhchhhhhcchhcccc
Q psy15503 108 PIGIRKAARAALILVPLFGLHHILLP 133 (157)
Q Consensus 108 ~~~~~~~~r~~~~L~~llG~tW~~g~ 133 (157)
+++.||..|.......+.-.+|.+..
T Consensus 179 ~~~~~kv~ksL~v~v~i~i~~w~~s~ 204 (257)
T PF10320_consen 179 SSRSKKVFKSLKVTVIIFIFSWFLSQ 204 (257)
T ss_pred chhHHHHHHHhhhheeeeeHHHHHHH
Confidence 34456677888888888899999744
No 12
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=68.28 E-value=6 Score=30.83 Aligned_cols=33 Identities=15% Similarity=0.379 Sum_probs=21.7
Q ss_pred chhhhhhhhcccceeeeEEeeeeeccccCCccc
Q psy15503 29 LMRWFHFIGWVVPLIITSVYAYVRHTSLEDIKY 61 (157)
Q Consensus 29 ~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~~~~ 61 (157)
+.+.-.++-|..|.++..+...-....|++.+.
T Consensus 119 ~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~ 151 (283)
T PF10323_consen 119 KIWIIILIQWIPPLLISLPFFFDTDFYFDNEEN 151 (283)
T ss_pred chhheeeeeehhhhhheeeeeccCceeeecccc
Confidence 444556788999999888865544444555444
No 13
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=51.63 E-value=35 Score=27.01 Aligned_cols=72 Identities=18% Similarity=0.354 Sum_probs=42.3
Q ss_pred cccccccccceeeeehhHHHHHHHHHHHHHHHHHHHHH--HhccCCCC---CChhhHHHHHHHHhchhhhhcchhcc
Q psy15503 60 KYCWMNDAHSRWILTVPVCLSILVNLAILMNVLRVLLT--KLHSNSTN---PAPIGIRKAARAALILVPLFGLHHIL 131 (157)
Q Consensus 60 ~~CWl~~~~~~~~f~~Pv~~ill~N~vif~~v~~~l~~--k~~~~~~~---~~~~~~~~~~r~~~~L~~llG~tW~~ 131 (157)
.+|+...++.......|..+.++.|++-++.-.+-+.+ |+|.++.+ +++=|..+..|..=.|.|...+++++
T Consensus 169 ~yC~~~~~~~~~~~~~~~~~~~~~~i~~~i~f~~L~~~Nkk~r~~~~~~~LS~RYQl~ENl~slr~L~p~~~~~~i~ 245 (324)
T PF10292_consen 169 YYCQASSSSSPYRVNIPFIVILVLQILALILFRYLLRKNKKLRKQQKHSTLSERYQLEENLRSLRLLKPFIILSSIF 245 (324)
T ss_pred eeeEEecCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHhHHhHHHHHHHHHHHHHHHHHH
Confidence 57998765456667888888888887765543322222 33322211 23445566666666666666666664
No 14
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=49.31 E-value=28 Score=27.24 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=14.2
Q ss_pred HHHHHHHhchhhhhcchhc
Q psy15503 112 RKAARAALILVPLFGLHHI 130 (157)
Q Consensus 112 ~~~~r~~~~L~~llG~tW~ 130 (157)
+|..|....+..++-+.|.
T Consensus 240 ~k~~k~l~~iv~~f~i~w~ 258 (335)
T PHA03087 240 KKAIKLVLIIVILFVIFWL 258 (335)
T ss_pred chHHHhHHHHHHHHHHHHH
Confidence 4557777777788888886
No 15
>PHA03049 IMV membrane protein; Provisional
Probab=48.95 E-value=48 Score=20.14 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC
Q psy15503 78 CLSILVNLAILMNVLRVLLTKLHSNST 104 (157)
Q Consensus 78 ~~ill~N~vif~~v~~~l~~k~~~~~~ 104 (157)
++.+.+.+++..++++.+.+|.+.+++
T Consensus 5 ~~l~iICVaIi~lIvYgiYnkk~~~q~ 31 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNKKTTTSQ 31 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 345566666777888888877665543
No 16
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=46.79 E-value=41 Score=25.73 Aligned_cols=33 Identities=12% Similarity=0.395 Sum_probs=14.6
Q ss_pred hhhhhhcccceeeeEEeeeeec--cccCCcccccc
Q psy15503 32 WFHFIGWVVPLIITSVYAYVRH--TSLEDIKYCWM 64 (157)
Q Consensus 32 ~~~~~gwg~P~~iv~i~~~~~~--~~y~~~~~CWl 64 (157)
....+.|..+..........+. ..|+.+..-|.
T Consensus 113 ~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~ 147 (274)
T PF10328_consen 113 ILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWS 147 (274)
T ss_pred hhhhHHHHHHHHHHHHhhhcCCCcceeccceeeee
Confidence 3456667765533322222211 12444455555
No 17
>KOG4219|consensus
Probab=46.45 E-value=1.7e+02 Score=24.40 Aligned_cols=126 Identities=12% Similarity=0.164 Sum_probs=59.9
Q ss_pred hhhHHHhHHHHHHHHHHHHhhccC--Ccchh------hhhhhhcccceeeeEEeeeeeccccCC-----cccccccc--c
Q psy15503 3 ANYFWMFCEGLHLHLALVVVFVKD--TSLMR------WFHFIGWVVPLIITSVYAYVRHTSLED-----IKYCWMND--A 67 (157)
Q Consensus 3 asf~Wm~ve~~~l~~~lv~~~~~~--~~~~~------~~~~~gwg~P~~iv~i~~~~~~~~y~~-----~~~CWl~~--~ 67 (157)
+|-+=|...|+|=|++++....+. +++-+ |...++-+.|.....-+-.. ..|++ ...||.++ .
T Consensus 121 vSVfTlvAiA~DRy~AIi~Pl~~r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~--~~~d~~~~~~~~~~~pe~~~~ 198 (423)
T KOG4219|consen 121 VSVFTLVAIAIDRYMAIIHPLQPRPSRRSSKIIILLIWALALLLALPQLLYSSVEEL--YLYDGESRVVCVTAWPEHVCP 198 (423)
T ss_pred HhHHHHHHHHHHHHHHHhhhcccCCCCcceeehhHHHHHHHHHHhccceeeeeeEEe--eccCCcceEEEEEecccccCC
Confidence 455668889999999998765322 22212 34445555555432211111 11211 13577765 1
Q ss_pred c---cee---eeehhHHHHHHHHHH----HHHHHHHHHHHHhccCCCCC---C-hhhHHHHHHHHhchhhhhcchhc
Q psy15503 68 H---SRW---ILTVPVCLSILVNLA----ILMNVLRVLLTKLHSNSTNP---A-PIGIRKAARAALILVPLFGLHHI 130 (157)
Q Consensus 68 ~---~~~---~f~~Pv~~ill~N~v----if~~v~~~l~~k~~~~~~~~---~-~~~~~~~~r~~~~L~~llG~tW~ 130 (157)
. ..- .-.+-+.+...+=++ -+..+.+.++.....++.++ | .+..||..|........+++-|.
T Consensus 199 ~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d~~~~~~kak~K~vkmliiVV~~FaicWl 275 (423)
T KOG4219|consen 199 TENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQDRKHEQLKAKKKVVKMLIIVVVIFAICWL 275 (423)
T ss_pred cchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 110 111111222222222 22344445554322222222 1 12345677888888899999998
No 18
>PHA02902 putative IMV membrane protein; Provisional
Probab=38.72 E-value=90 Score=18.87 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy15503 78 CLSILVNLAILMNVLRVLLTKLH 100 (157)
Q Consensus 78 ~~ill~N~vif~~v~~~l~~k~~ 100 (157)
.+++++.++++...++...++.|
T Consensus 6 fvi~~v~v~Ivclliya~YrR~k 28 (70)
T PHA02902 6 FVILAVIVIIFCLLIYAAYKRYK 28 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677777777877777776553
No 19
>PHA02834 chemokine receptor-like protein; Provisional
Probab=36.49 E-value=6.3 Score=31.09 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=11.8
Q ss_pred HHHHHHhchhhhhcchhc
Q psy15503 113 KAARAALILVPLFGLHHI 130 (157)
Q Consensus 113 ~~~r~~~~L~~llG~tW~ 130 (157)
|..|..+.+...+-+.|.
T Consensus 226 k~~k~~~~vv~~F~icWl 243 (323)
T PHA02834 226 RSIKIILTVVTFTVVFWV 243 (323)
T ss_pred eEEeehhHHHHHHHHHHh
Confidence 345666666666777887
No 20
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=33.83 E-value=82 Score=24.05 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=9.0
Q ss_pred HHHHhchhhhhcchhccc
Q psy15503 115 ARAALILVPLFGLHHILL 132 (157)
Q Consensus 115 ~r~~~~L~~llG~tW~~g 132 (157)
++.++..-.+.-+.++.-
T Consensus 209 ~~Qs~~Q~~~~~i~~~~~ 226 (274)
T PF10328_consen 209 FIQSFIQDLLYLIDLIFY 226 (274)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555543
No 21
>KOG3577|consensus
Probab=31.86 E-value=26 Score=30.32 Aligned_cols=58 Identities=17% Similarity=0.386 Sum_probs=38.9
Q ss_pred cchhhhhhhhcccceeeeEEeeeee-ccccCCcccccccc-c--cceeeeehhHHHHHHHHH
Q psy15503 28 SLMRWFHFIGWVVPLIITSVYAYVR-HTSLEDIKYCWMND-A--HSRWILTVPVCLSILVNL 85 (157)
Q Consensus 28 ~~~~~~~~~gwg~P~~iv~i~~~~~-~~~y~~~~~CWl~~-~--~~~~~f~~Pv~~ill~N~ 85 (157)
++-.++...+|+.|++-.++....+ -+++.-+..|.+.+ + ..-..+..|....+.+-.
T Consensus 350 ~~~~~fh~~aw~~p~~~ti~~l~~~~v~~~~~~giC~vG~~~~~~~~~fvl~pl~~~l~ig~ 411 (556)
T KOG3577|consen 350 AKSSYFHLLAWGLPSVQTILILALNKVDGDELSGICFVGNSNPDALRGFVLAPLFLYLIIGT 411 (556)
T ss_pred cccceeeehhcCCchHHHHHHHHHHHhcccceeEEEecCCCCcchhceeeecchhhhhhHHH
Confidence 4455678999999998775555433 34445567899984 2 456667777777666665
No 22
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=30.65 E-value=1.3e+02 Score=18.33 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC
Q psy15503 78 CLSILVNLAILMNVLRVLLTKLHSNS 103 (157)
Q Consensus 78 ~~ill~N~vif~~v~~~l~~k~~~~~ 103 (157)
++.+.+-+++-..+++.+..|.+.++
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~~~~q 30 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRKKTTQ 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccC
Confidence 34555666677777888877655443
No 23
>PHA03234 DNA packaging protein UL33; Provisional
Probab=28.57 E-value=37 Score=27.13 Aligned_cols=20 Identities=25% Similarity=0.092 Sum_probs=16.0
Q ss_pred HHHHHHHHhchhhhhcchhc
Q psy15503 111 IRKAARAALILVPLFGLHHI 130 (157)
Q Consensus 111 ~~~~~r~~~~L~~llG~tW~ 130 (157)
.+|..|..+.+...+.+.|.
T Consensus 232 ~~k~~k~i~~vv~vF~iCWl 251 (338)
T PHA03234 232 HKKTLFFIRILILSFLCIQI 251 (338)
T ss_pred hhhhhhHHHHHHHHHHHHHh
Confidence 35668888888888888888
No 24
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=26.28 E-value=62 Score=23.46 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=21.7
Q ss_pred eeeeehhHHHHHHHHHHHHHHHHHHHHH
Q psy15503 70 RWILTVPVCLSILVNLAILMNVLRVLLT 97 (157)
Q Consensus 70 ~~~f~~Pv~~ill~N~vif~~v~~~l~~ 97 (157)
...|-.|+...-++|+++++.+++.+..
T Consensus 19 ~f~~n~~~~~~~~Inflill~lL~~fl~ 46 (184)
T CHL00019 19 SFGFNTDILETNLINLSVVLGVLIYFGK 46 (184)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHhH
Confidence 4567679888889999999988865443
No 25
>PF15102 TMEM154: TMEM154 protein family
Probab=25.80 E-value=36 Score=24.09 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=12.2
Q ss_pred cceeeeehh-HHHHHHHHHHH
Q psy15503 68 HSRWILTVP-VCLSILVNLAI 87 (157)
Q Consensus 68 ~~~~~f~~P-v~~ill~N~vi 87 (157)
.++...++| +++.+++=+++
T Consensus 56 efiLmIlIP~VLLvlLLl~vV 76 (146)
T PF15102_consen 56 EFILMILIPLVLLVLLLLSVV 76 (146)
T ss_pred ceEEEEeHHHHHHHHHHHHHH
Confidence 458888999 44444444443
No 26
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=24.07 E-value=81 Score=18.76 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=18.1
Q ss_pred CCChhhHHHHHHHHhchhhhhcc
Q psy15503 105 NPAPIGIRKAARAALILVPLFGL 127 (157)
Q Consensus 105 ~~~~~~~~~~~r~~~~L~~llG~ 127 (157)
+.+++++++..|++..-+.++|+
T Consensus 26 KPd~~Ef~~ia~~~~iG~~i~G~ 48 (61)
T PRK09400 26 KPTREEFLLVAKVTGLGILLIGL 48 (61)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 34678888989988888888875
No 27
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=22.28 E-value=1.5e+02 Score=23.63 Aligned_cols=9 Identities=11% Similarity=-0.053 Sum_probs=5.0
Q ss_pred ChhhHHHHH
Q psy15503 107 APIGIRKAA 115 (157)
Q Consensus 107 ~~~~~~~~~ 115 (157)
++.|+.|.+
T Consensus 289 KKlQYiKLL 297 (299)
T PF02009_consen 289 KKLQYIKLL 297 (299)
T ss_pred HHHHHHHHh
Confidence 455666644
No 28
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=22.03 E-value=93 Score=18.25 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHhchhhhhcchhcc
Q psy15503 108 PIGIRKAARAALILVPLFGLHHIL 131 (157)
Q Consensus 108 ~~~~~~~~r~~~~L~~llG~tW~~ 131 (157)
+++.|.-+-.+..++|++.+.=+-
T Consensus 15 ~~E~~~flfl~~~l~PiL~v~~Vg 38 (56)
T PF06796_consen 15 RSELKAFLFLAVVLFPILAVAFVG 38 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444567777887766553
No 29
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=21.40 E-value=94 Score=17.54 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHhchhhhhcchhcc
Q psy15503 108 PIGIRKAARAALILVPLFGLHHIL 131 (157)
Q Consensus 108 ~~~~~~~~r~~~~L~~llG~tW~~ 131 (157)
+++.|.-+-.+..++|++.+.=+-
T Consensus 7 ~~El~~flfl~v~l~PiLsV~~Vg 30 (47)
T TIGR02972 7 SNELKALGFIIVVLFPILSVAGIG 30 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556677778887766553
Done!