Query psy15503
Match_columns 157
No_of_seqs 148 out of 1113
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 22:54:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ea3_A Fusion protein of nocic 92.4 0.033 1.1E-06 44.1 0.9 123 5-131 212-352 (434)
2 4amj_A Beta-1 adrenergic recep 90.9 0.074 2.5E-06 39.4 1.3 124 4-131 98-247 (315)
3 2z73_A Rhodopsin; visual pigme 87.8 0.46 1.6E-05 37.4 3.9 88 4-91 122-227 (448)
4 2ks9_A Substance-P receptor; w 87.1 0.06 2.1E-06 41.1 -1.6 20 111-130 243-262 (364)
5 3rze_A Histamine H1 receptor, 84.2 0.77 2.6E-05 35.8 3.5 86 4-89 95-196 (452)
6 4dkl_A MU-type opioid receptor 81.3 0.37 1.3E-05 37.7 0.5 85 4-88 103-205 (464)
7 3sn6_R Lysozyme, beta-2 adrene 80.3 0.64 2.2E-05 37.5 1.6 86 6-91 271-375 (514)
8 3pbl_A D(3) dopamine receptor, 79.3 1.1 3.6E-05 35.3 2.6 82 6-88 128-221 (481)
9 4eiy_A Adenosine receptor A2A/ 79.1 0.45 1.5E-05 37.1 0.3 87 7-93 119-231 (447)
10 3odu_A C-X-C chemokine recepto 66.5 4.2 0.00014 32.0 3.2 21 111-131 408-428 (502)
11 3uon_A Human M2 muscarinic ace 60.6 1.5 5E-05 34.3 -0.5 84 4-87 110-209 (467)
12 2lnl_A C-X-C chemokine recepto 58.0 5.2 0.00018 29.2 2.2 22 109-130 207-228 (296)
13 4grv_A Neurotensin receptor ty 56.3 7.7 0.00026 31.1 3.1 86 5-90 125-231 (510)
14 1u19_A Rhodopsin; G protein-co 54.8 0.29 1E-05 36.8 -5.4 21 111-131 248-268 (349)
15 3eml_A Human adenosine A2A rec 46.7 9.5 0.00032 29.7 2.1 19 112-130 391-409 (488)
16 3v2y_A Sphingosine 1-phosphate 37.2 22 0.00074 28.5 2.9 82 8-91 153-246 (520)
17 3vw7_A Proteinase-activated re 32.1 26 0.00088 27.2 2.5 19 112-130 386-404 (484)
18 2rh1_A Beta-2-adrenergic recep 26.8 16 0.00056 28.9 0.5 19 112-130 404-422 (500)
19 3mp7_B Preprotein translocase 23.6 56 0.0019 18.6 2.3 22 106-127 25-46 (61)
No 1
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=92.43 E-value=0.033 Score=44.07 Aligned_cols=123 Identities=13% Similarity=0.128 Sum_probs=54.8
Q ss_pred hHHHhHHHHHHHHHHHHhhcc----CCcchhhhhhhhcccceeeeEEeeeeec-cccCCcccccccc-cc-c--------
Q psy15503 5 YFWMFCEGLHLHLALVVVFVK----DTSLMRWFHFIGWVVPLIITSVYAYVRH-TSLEDIKYCWMND-AH-S-------- 69 (157)
Q Consensus 5 f~Wm~ve~~~l~~~lv~~~~~----~~~~~~~~~~~gwg~P~~iv~i~~~~~~-~~y~~~~~CWl~~-~~-~-------- 69 (157)
..-+.+.+++=|..+...... .+++.....+..|..+++.......... ....++..|.... .+ .
T Consensus 212 ~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 291 (434)
T 4ea3_A 212 TFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEIECLVEIPTPQDYWGPVFAI 291 (434)
T ss_dssp HHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCSSCCCEEECCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhEEEcccccccccchhhhHHhhhhhhhHHHHHHhhHheeeeeEeecCceeEEEecCChHhHHHHHHHH
Confidence 334455666666666643321 1123334456678777665432222111 1112445787652 11 1
Q ss_pred ---eeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCChhhHHHHHHHHhchhhhhcchhcc
Q psy15503 70 ---RWILTVPVCLSILVNLAILMNVLRVLLTKLHSNSTNPAPIGIRKAARAALILVPLFGLHHIL 131 (157)
Q Consensus 70 ---~~~f~~Pv~~ill~N~vif~~v~~~l~~k~~~~~~~~~~~~~~~~~r~~~~L~~llG~tW~~ 131 (157)
...+..|..+++..+ ..+.+.++++.+..++++++++.+|..|..+.+..++-+.|+-
T Consensus 292 ~~~~~~~~ip~~ii~~~y----~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vv~~F~i~w~P 352 (434)
T 4ea3_A 292 CIFLFSFIVPVLVISVCY----SLMIRRLRGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTP 352 (434)
T ss_dssp HHHHHHTHHHHHHHHHHH----HHHHHHHTTCSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHhhccccccchhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 112334444443333 3333333221111111112233456667777777777888873
No 2
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=90.94 E-value=0.074 Score=39.39 Aligned_cols=124 Identities=14% Similarity=0.176 Sum_probs=59.9
Q ss_pred hhHHHhHHHHHHHHHHHHhhcc----CCcchhhhhhhhcccceeeeEEeeeeecc--ccCCcccccccc-------c---
Q psy15503 4 NYFWMFCEGLHLHLALVVVFVK----DTSLMRWFHFIGWVVPLIITSVYAYVRHT--SLEDIKYCWMND-------A--- 67 (157)
Q Consensus 4 sf~Wm~ve~~~l~~~lv~~~~~----~~~~~~~~~~~gwg~P~~iv~i~~~~~~~--~y~~~~~CWl~~-------~--- 67 (157)
+..-+.+.+++=|..+...... .+++........|..+++........... ...+...|..+. +
T Consensus 98 S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 177 (315)
T 4amj_A 98 SIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAY 177 (315)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSHHHHHHHHCTTCCCCCCCHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccccchhhHHHhhhHHHHHHHHHHHHHHHHHhccccCCCccccccccccchhhcchHH
Confidence 4445556777777777654321 22344455677788776654332221111 111123444321 0
Q ss_pred ---cceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccC---CC-CCCh---hhHHHHHHHHhchhhhhcchhcc
Q psy15503 68 ---HSRWILTVPVCLSILVNLAILMNVLRVLLTKLHSN---ST-NPAP---IGIRKAARAALILVPLFGLHHIL 131 (157)
Q Consensus 68 ---~~~~~f~~Pv~~ill~N~vif~~v~~~l~~k~~~~---~~-~~~~---~~~~~~~r~~~~L~~llG~tW~~ 131 (157)
.....+..|..+++..+..++ +.+.++.+.. ++ +.++ ++.+|..|....+...+-+.|.-
T Consensus 178 ~~~~~~~~~~ip~~ii~~~y~~i~----~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~~~P 247 (315)
T 4amj_A 178 AIASSIISFYIPLLIMIFVALRVY----REAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLP 247 (315)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHHH----HHHHTC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhccCcccccccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 124557788888877665443 3333321111 11 1111 13345566666667777788873
No 3
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=87.83 E-value=0.46 Score=37.39 Aligned_cols=88 Identities=9% Similarity=0.041 Sum_probs=43.1
Q ss_pred hhHHHhHHHHHHHHHHHHhhccC----CcchhhhhhhhcccceeeeEEeee-eecccc-CCcccccccc---c--c----
Q psy15503 4 NYFWMFCEGLHLHLALVVVFVKD----TSLMRWFHFIGWVVPLIITSVYAY-VRHTSL-EDIKYCWMND---A--H---- 68 (157)
Q Consensus 4 sf~Wm~ve~~~l~~~lv~~~~~~----~~~~~~~~~~gwg~P~~iv~i~~~-~~~~~y-~~~~~CWl~~---~--~---- 68 (157)
+...+.+.+++=|..+..-.... +++.....++.|..+++....... .+...+ +....|+... + .
T Consensus 122 S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 201 (448)
T 2z73_A 122 SIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNI 201 (448)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTCCCCCHHHHHHHHHHHHHHHHHHHSGGGGTSSCEEECTTSSSEEECCSCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccceechhHHHHHHHHHHHHHHHHHHHHHhceeeeeecCCceeEecccccCCcchhHHH
Confidence 34455566666666665433211 123344567778877665433222 111111 2234676542 1 0
Q ss_pred ---ceeeeehhHHHHHHHHHHHHHHH
Q psy15503 69 ---SRWILTVPVCLSILVNLAILMNV 91 (157)
Q Consensus 69 ---~~~~f~~Pv~~ill~N~vif~~v 91 (157)
....+..|.++++..+..++..+
T Consensus 202 ~~~~~~~~~lP~~ii~~~y~~I~~~l 227 (448)
T 2z73_A 202 LCMFILGFFGPILIIFFCYFNIVMSV 227 (448)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12235677777777666555444
No 4
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=87.15 E-value=0.06 Score=41.10 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=14.1
Q ss_pred HHHHHHHHhchhhhhcchhc
Q psy15503 111 IRKAARAALILVPLFGLHHI 130 (157)
Q Consensus 111 ~~~~~r~~~~L~~llG~tW~ 130 (157)
.+|..|..+.+...+-+.|.
T Consensus 243 ~~k~~~~~~~v~~~f~~~~~ 262 (364)
T 2ks9_A 243 KRKVVKMMIVVVCTFAICWL 262 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 45566777777777778886
No 5
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=84.22 E-value=0.77 Score=35.78 Aligned_cols=86 Identities=9% Similarity=-0.005 Sum_probs=43.4
Q ss_pred hhHHHhHHHHHHHHHHHHhhccC----CcchhhhhhhhcccceeeeEEeeeeeccc----cCCccccccccc-c------
Q psy15503 4 NYFWMFCEGLHLHLALVVVFVKD----TSLMRWFHFIGWVVPLIITSVYAYVRHTS----LEDIKYCWMNDA-H------ 68 (157)
Q Consensus 4 sf~Wm~ve~~~l~~~lv~~~~~~----~~~~~~~~~~gwg~P~~iv~i~~~~~~~~----y~~~~~CWl~~~-~------ 68 (157)
+..-+.+.+++=|..+....... +++.....+..|.++++......+..... +.....|+.+.. .
T Consensus 95 s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 174 (452)
T 3rze_A 95 SIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIPILGWNHFMQQTSVRREDKCETDFYDVTWFKVM 174 (452)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCTTTTSSHHHHHHHHHHHHHHHGGGHHHHHCCCC-------CCSSSSCCSCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHheeCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCeecCCCcccHHHHHH
Confidence 34455667777777776544221 12333455677888766544322222211 123457876532 1
Q ss_pred -ceeeeehhHHHHHHHHHHHHH
Q psy15503 69 -SRWILTVPVCLSILVNLAILM 89 (157)
Q Consensus 69 -~~~~f~~Pv~~ill~N~vif~ 89 (157)
....+..|.++++..+..++.
T Consensus 175 ~~~~~~~~p~~ii~~~y~~I~~ 196 (452)
T 3rze_A 175 TAIINFYLPTLLMLWFYAKIYK 196 (452)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 123356666666666555443
No 6
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=81.27 E-value=0.37 Score=37.75 Aligned_cols=85 Identities=8% Similarity=0.108 Sum_probs=44.5
Q ss_pred hhHHHhHHHHHHHHHHHHhhcc----CCcchhhhhhhhcccceeeeEEeeee-eccccCCcccccccc-cc---------
Q psy15503 4 NYFWMFCEGLHLHLALVVVFVK----DTSLMRWFHFIGWVVPLIITSVYAYV-RHTSLEDIKYCWMND-AH--------- 68 (157)
Q Consensus 4 sf~Wm~ve~~~l~~~lv~~~~~----~~~~~~~~~~~gwg~P~~iv~i~~~~-~~~~y~~~~~CWl~~-~~--------- 68 (157)
+..-+.+.+++=|..+...... .+++.....+..|.+++++....... ....+.++..|.... ..
T Consensus 103 s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 182 (464)
T 4dkl_A 103 SIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLK 182 (464)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHSBCCEEETTEEECCBCCSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccHhHHhHHHHHHHHHHHHHHHHHheeecccCCCceEEeecCCcchHHHHHHH
Confidence 3445556777777777654321 22334455677788776655433322 122223445687652 11
Q ss_pred ---ceeeeehhHHHHHHHHHHHH
Q psy15503 69 ---SRWILTVPVCLSILVNLAIL 88 (157)
Q Consensus 69 ---~~~~f~~Pv~~ill~N~vif 88 (157)
....+..|.++++..+..++
T Consensus 183 ~~~~~~~~~~p~~ii~~~y~~i~ 205 (464)
T 4dkl_A 183 ICVFIFAFIMPVLIITVCYGLMI 205 (464)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 12235667666666665443
No 7
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=80.31 E-value=0.64 Score=37.46 Aligned_cols=86 Identities=12% Similarity=0.185 Sum_probs=41.3
Q ss_pred HHHhHHHHHHHHHHHHhhc----cCCcchhhhhhhhcccceeeeEEeeeeecccc--CCcccccccc-------c-----
Q psy15503 6 FWMFCEGLHLHLALVVVFV----KDTSLMRWFHFIGWVVPLIITSVYAYVRHTSL--EDIKYCWMND-------A----- 67 (157)
Q Consensus 6 ~Wm~ve~~~l~~~lv~~~~----~~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y--~~~~~CWl~~-------~----- 67 (157)
.-+.+.+++=|..+..... ..+++.....+..|.++++...+........+ .+...|...+ +
T Consensus 271 ~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~Wi~s~l~~~~p~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~y~~ 350 (514)
T 3sn6_R 271 ETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAI 350 (514)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHCCHHHHHHHHHHHHHHHHHTTHHHHHTTTTC---CHHHHHHHSSSCCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCccccchhccchHHHHHHHHHHHHHHHHHhhhhhccceecccCcccceeecccccccccccHHHH
Confidence 3445566666766654432 12233445567778877665432222111111 1122343321 0
Q ss_pred -cceeeeehhHHHHHHHHHHHHHHH
Q psy15503 68 -HSRWILTVPVCLSILVNLAILMNV 91 (157)
Q Consensus 68 -~~~~~f~~Pv~~ill~N~vif~~v 91 (157)
.....+..|.++++..+..++..+
T Consensus 351 ~~~~~~~~lP~~ii~~~y~~I~~~l 375 (514)
T 3sn6_R 351 ASSIVSFYVPLVIMVFVYSRVFQEA 375 (514)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122336677777777776665444
No 8
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=79.33 E-value=1.1 Score=35.35 Aligned_cols=82 Identities=13% Similarity=0.212 Sum_probs=43.0
Q ss_pred HHHhHHHHHHHHHHHHhhcc----CC---cchhhhhhhhcccceeeeEEeeeeeccccCCccccccccc-----cceeee
Q psy15503 6 FWMFCEGLHLHLALVVVFVK----DT---SLMRWFHFIGWVVPLIITSVYAYVRHTSLEDIKYCWMNDA-----HSRWIL 73 (157)
Q Consensus 6 ~Wm~ve~~~l~~~lv~~~~~----~~---~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~~~~CWl~~~-----~~~~~f 73 (157)
.-+.+.+++=|..+...... .. ++.....+..|.+++++...... ....+++...|...+. .....+
T Consensus 128 ~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~-~~~~~~~~~~C~~~~~~~~~~~~~~~~ 206 (481)
T 3pbl_A 128 WNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLF-GFNTTGDPTVCSISNPDFVIYSSVVSF 206 (481)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHT-TTCCCSSTTCCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHh-eecccCCCCcccccCccHHHHHHHHHH
Confidence 34455677777776654321 11 22234556778877665443222 1222345677987743 123346
Q ss_pred ehhHHHHHHHHHHHH
Q psy15503 74 TVPVCLSILVNLAIL 88 (157)
Q Consensus 74 ~~Pv~~ill~N~vif 88 (157)
..|.++++..+..++
T Consensus 207 ~ip~~ii~~~y~~i~ 221 (481)
T 3pbl_A 207 YLPFGVTVLVYARIY 221 (481)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 667766666654443
No 9
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=79.07 E-value=0.45 Score=37.09 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=44.2
Q ss_pred HHhHHHHHHHHHHHHhhc----cCCcchhhhhhhhcccceeeeEEeee-eeccccC------------Ccccccccc-c-
Q psy15503 7 WMFCEGLHLHLALVVVFV----KDTSLMRWFHFIGWVVPLIITSVYAY-VRHTSLE------------DIKYCWMND-A- 67 (157)
Q Consensus 7 Wm~ve~~~l~~~lv~~~~----~~~~~~~~~~~~gwg~P~~iv~i~~~-~~~~~y~------------~~~~CWl~~-~- 67 (157)
-+.+.+++=|..+..... ..+++.....+..|..++++...... .....+. +...|+.++ .
T Consensus 119 ~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~Wi~s~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 198 (447)
T 4eiy_A 119 SLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVP 198 (447)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHSCHHHHHHHHHHHHHHHHHHHTGGGGTCSSTTSCCHHHHHHTTCCTTEEECCHHHHSC
T ss_pred HHHHHHHHHHeEEecccccchhhhHHHHHHHHhHHHHHHHHHHHhhhheeccccccCccccccccccccchhhccccccc
Confidence 345567777777665432 12233344556778877654432222 1111110 112354432 1
Q ss_pred -------cceeeeehhHHHHHHHHHHHHHHHHH
Q psy15503 68 -------HSRWILTVPVCLSILVNLAILMNVLR 93 (157)
Q Consensus 68 -------~~~~~f~~Pv~~ill~N~vif~~v~~ 93 (157)
.....+..|.++++..+..++..+-+
T Consensus 199 ~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~ 231 (447)
T 4eiy_A 199 MNYMVYFNFFACVLVPLLLMLGVYLRIFLAARR 231 (447)
T ss_dssp HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13345788999888888777655543
No 10
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=66.54 E-value=4.2 Score=32.04 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=15.0
Q ss_pred HHHHHHHHhchhhhhcchhcc
Q psy15503 111 IRKAARAALILVPLFGLHHIL 131 (157)
Q Consensus 111 ~~~~~r~~~~L~~llG~tW~~ 131 (157)
.+|..|..+.+...+-+.|+-
T Consensus 408 ~~k~~k~l~~vv~~F~icw~P 428 (502)
T 3odu_A 408 KRKALKTTVILILAFFACWLP 428 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 356677777777777888883
No 11
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=60.62 E-value=1.5 Score=34.31 Aligned_cols=84 Identities=10% Similarity=0.152 Sum_probs=42.5
Q ss_pred hhHHHhHHHHHHHHHHHHhhccC----CcchhhhhhhhcccceeeeEEeeeeec----cccCCcccccccc-cc------
Q psy15503 4 NYFWMFCEGLHLHLALVVVFVKD----TSLMRWFHFIGWVVPLIITSVYAYVRH----TSLEDIKYCWMND-AH------ 68 (157)
Q Consensus 4 sf~Wm~ve~~~l~~~lv~~~~~~----~~~~~~~~~~gwg~P~~iv~i~~~~~~----~~y~~~~~CWl~~-~~------ 68 (157)
+..-+.+.+++=|..+....... +++.....++.|.+++++......... ....+...|.... ..
T Consensus 110 s~~~l~~isidRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 189 (467)
T 3uon_A 110 SVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTFG 189 (467)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCSSCCCCGGGGSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCcceeecCcchHHHHH
Confidence 33445566777777776543211 123334567788887765443322211 1123456788763 21
Q ss_pred -ceeeeehhHHHHHHHHHHH
Q psy15503 69 -SRWILTVPVCLSILVNLAI 87 (157)
Q Consensus 69 -~~~~f~~Pv~~ill~N~vi 87 (157)
....+..|.++++..+..+
T Consensus 190 ~~~~~~~~p~~ii~~~y~~I 209 (467)
T 3uon_A 190 TAIAAFYLPVIIMTVLYWHI 209 (467)
T ss_dssp HHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 1223556666665555444
No 12
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=57.96 E-value=5.2 Score=29.21 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=15.9
Q ss_pred hhHHHHHHHHhchhhhhcchhc
Q psy15503 109 IGIRKAARAALILVPLFGLHHI 130 (157)
Q Consensus 109 ~~~~~~~r~~~~L~~llG~tW~ 130 (157)
++.+|..|........+-+.|.
T Consensus 207 ~~~~k~~~~~~~v~~~f~icw~ 228 (296)
T 2lnl_A 207 GQKHRAMRVIFAVVLIFLLCWL 228 (296)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhhhheeeeeh
Confidence 4445667777777778888887
No 13
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=56.32 E-value=7.7 Score=31.12 Aligned_cols=86 Identities=13% Similarity=0.068 Sum_probs=42.9
Q ss_pred hHHHhHHHHHHHHHHHHhhcc----CCcchhhhhhhhcccceeeeEEee---eeecccc----CCccccccccc------
Q psy15503 5 YFWMFCEGLHLHLALVVVFVK----DTSLMRWFHFIGWVVPLIITSVYA---YVRHTSL----EDIKYCWMNDA------ 67 (157)
Q Consensus 5 f~Wm~ve~~~l~~~lv~~~~~----~~~~~~~~~~~gwg~P~~iv~i~~---~~~~~~y----~~~~~CWl~~~------ 67 (157)
..-+.+.+++=|..++..... .+++.....+..|.+++++....+ ....... .....|....+
T Consensus 125 ~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 204 (510)
T 4grv_A 125 ALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHPGGLVCTPIVDTATVKV 204 (510)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSSCCGGGEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCCCCCCccccccccccchhhh
Confidence 334555677777777654322 223334455666776655433211 1111110 11234654321
Q ss_pred ----cceeeeehhHHHHHHHHHHHHHH
Q psy15503 68 ----HSRWILTVPVCLSILVNLAILMN 90 (157)
Q Consensus 68 ----~~~~~f~~Pv~~ill~N~vif~~ 90 (157)
.....|++|.++++..+..++..
T Consensus 205 ~~~~~~~~~f~iP~~ii~~~Y~~I~~~ 231 (510)
T 4grv_A 205 VIQVNTFMSFLFPMLVISILNTVIANK 231 (510)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHhhhHHHHHHHHHHHHHH
Confidence 12345788988888877766543
No 14
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=54.79 E-value=0.29 Score=36.77 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=12.6
Q ss_pred HHHHHHHHhchhhhhcchhcc
Q psy15503 111 IRKAARAALILVPLFGLHHIL 131 (157)
Q Consensus 111 ~~~~~r~~~~L~~llG~tW~~ 131 (157)
.+|..|..+.+...+-+.|+-
T Consensus 248 ~~~~~~~~~~i~~~f~i~~~P 268 (349)
T 1u19_A 248 EKEVTRMVIIMVIAFLICWLP 268 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556566666666677763
No 15
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=46.70 E-value=9.5 Score=29.72 Aligned_cols=19 Identities=37% Similarity=0.520 Sum_probs=14.2
Q ss_pred HHHHHHHhchhhhhcchhc
Q psy15503 112 RKAARAALILVPLFGLHHI 130 (157)
Q Consensus 112 ~~~~r~~~~L~~llG~tW~ 130 (157)
+|..|..+.+...+-+.|+
T Consensus 391 ~r~~~~l~~iv~~F~icw~ 409 (488)
T 3eml_A 391 VHAAKSLAIIVGLFALCWL 409 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4556777777788888887
No 16
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=37.15 E-value=22 Score=28.47 Aligned_cols=82 Identities=11% Similarity=0.177 Sum_probs=40.2
Q ss_pred HhHHHHHHHHHHHHhhcc----CCcchhhhhhhhcccceeeeEEeeeeeccccCCccccccccc--c------ceeeeeh
Q psy15503 8 MFCEGLHLHLALVVVFVK----DTSLMRWFHFIGWVVPLIITSVYAYVRHTSLEDIKYCWMNDA--H------SRWILTV 75 (157)
Q Consensus 8 m~ve~~~l~~~lv~~~~~----~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~~~~CWl~~~--~------~~~~f~~ 75 (157)
+.+.+++=|..+. .... .+++.....+..|.++++....-.. ....|.+...|..... . ....|..
T Consensus 153 l~~isidRy~aI~-p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~-~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~l 230 (520)
T 3v2y_A 153 LLAIAIERYITML-KMKLHNGSNNFRLFLLISACWVISLILGGLPIM-GWNCISALSSCSTVLPLYHKHYILFCTTVFTL 230 (520)
T ss_dssp HHHHHHHHHHHHC-C-------CCHHHHHHHHHHHHHHHHHHHTTTT-TCBCTTCGGGBCSSSTTBBHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhEEe-ccccccccchhHHHHHHHHHHHHHHHHHHHHHH-eeccccCCCcccccCCccchHHHHHHHHHHHH
Confidence 4445666666654 3221 1223344556778877654432221 1222345567875421 1 1223667
Q ss_pred hHHHHHHHHHHHHHHH
Q psy15503 76 PVCLSILVNLAILMNV 91 (157)
Q Consensus 76 Pv~~ill~N~vif~~v 91 (157)
|.++++..+..++..+
T Consensus 231 Pl~ii~~~Y~~I~~~l 246 (520)
T 3v2y_A 231 LLLSIVILYCRIYSLV 246 (520)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777766665555433
No 17
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=32.07 E-value=26 Score=27.23 Aligned_cols=19 Identities=11% Similarity=-0.008 Sum_probs=14.1
Q ss_pred HHHHHHHhchhhhhcchhc
Q psy15503 112 RKAARAALILVPLFGLHHI 130 (157)
Q Consensus 112 ~~~~r~~~~L~~llG~tW~ 130 (157)
+|..|..+.+...+-+.|+
T Consensus 386 ~r~~k~l~~v~~~F~icwl 404 (484)
T 3vw7_A 386 SRALFLSAAVFCIFIICFG 404 (484)
T ss_dssp HHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4566767777777788888
No 18
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=26.80 E-value=16 Score=28.94 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=14.8
Q ss_pred HHHHHHHhchhhhhcchhc
Q psy15503 112 RKAARAALILVPLFGLHHI 130 (157)
Q Consensus 112 ~~~~r~~~~L~~llG~tW~ 130 (157)
+|..|....++..+-+.|+
T Consensus 404 ~ka~ktl~ivv~~F~icWl 422 (500)
T 2rh1_A 404 HKALKTLGIIMGTFTLCWL 422 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888898
No 19
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=23.63 E-value=56 Score=18.60 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=17.2
Q ss_pred CChhhHHHHHHHHhchhhhhcc
Q psy15503 106 PAPIGIRKAARAALILVPLFGL 127 (157)
Q Consensus 106 ~~~~~~~~~~r~~~~L~~llG~ 127 (157)
.+++++.+..|++..-+.++|+
T Consensus 25 Pd~~Ef~~iak~~~iG~~i~G~ 46 (61)
T 3mp7_B 25 PNWATYKRAAKITGLGIILIGL 46 (61)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888988888888775
Done!