Query psy15503
Match_columns 157
No_of_seqs 148 out of 1113
Neff 8.7
Searched_HMMs 13730
Date Fri Aug 16 22:55:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15503.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15503hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u19a_ f.13.1.2 (A:) Rhodopsi 63.6 0.21 1.6E-05 35.8 -2.9 22 110-131 246-267 (348)
2 d2ftxa1 d.300.1.1 (A:133-221) 28.4 7.1 0.00052 21.6 0.4 10 56-65 31-40 (89)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 19.8 74 0.0054 18.1 4.1 11 89-99 45-55 (100)
4 d1w7ja1 b.34.3.1 (A:5-62) Myos 16.4 24 0.0017 18.6 1.0 16 56-71 3-18 (58)
5 d1jb0i_ f.23.17.1 (I:) Subunit 11.5 12 0.00088 17.8 -1.1 12 35-46 17-28 (38)
6 d3ehbb2 f.17.2.1 (B:1-107) Bac 11.0 1.4E+02 0.01 17.1 3.6 6 92-97 54-59 (107)
7 d1rh5b_ f.23.28.1 (B:) Preprot 8.3 98 0.0071 16.0 1.8 22 106-127 18-39 (56)
8 d3b2ua2 g.3.9.1 (A:481-502) EG 6.6 69 0.005 13.5 0.5 8 58-65 7-14 (26)
9 d2pqrb1 a.118.8.1 (B:5-128) Mi 6.5 1.7E+02 0.012 17.4 2.6 20 4-23 40-68 (124)
10 d1v54l_ f.23.6.1 (L:) Mitochon 4.6 40 0.0029 16.7 -1.2 16 30-45 24-39 (46)
No 1
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=63.63 E-value=0.21 Score=35.77 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=15.9
Q ss_pred hHHHHHHHHhchhhhhcchhcc
Q psy15503 110 GIRKAARAALILVPLFGLHHIL 131 (157)
Q Consensus 110 ~~~~~~r~~~~L~~llG~tW~~ 131 (157)
+.||..|..+.+...+-+.|.-
T Consensus 246 ~~~~~~~~~~~i~~~f~~~~~P 267 (348)
T d1u19a_ 246 AEKEVTRMVIIMVIAFLICWLP 267 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHhheEEEeehHHHHHhhH
Confidence 3456677777788888888873
No 2
>d2ftxa1 d.300.1.1 (A:133-221) Kinetochore protein Spc25 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.35 E-value=7.1 Score=21.57 Aligned_cols=10 Identities=30% Similarity=0.983 Sum_probs=8.5
Q ss_pred cCCccccccc
Q psy15503 56 LEDIKYCWMN 65 (157)
Q Consensus 56 y~~~~~CWl~ 65 (157)
+|++..||++
T Consensus 31 fgddsrcwie 40 (89)
T d2ftxa1 31 FGDDSRCWIE 40 (89)
T ss_dssp ESSSSSEEEE
T ss_pred ecCCCceEEE
Confidence 5788999986
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=19.84 E-value=74 Score=18.07 Aligned_cols=11 Identities=9% Similarity=0.030 Sum_probs=4.7
Q ss_pred HHHHHHHHHHh
Q psy15503 89 MNVLRVLLTKL 99 (157)
Q Consensus 89 ~~v~~~l~~k~ 99 (157)
....+.+.+++
T Consensus 45 ~~l~~~~~~~r 55 (100)
T d3dtub2 45 LLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHB
T ss_pred HHHHHHhhhhh
Confidence 33344444433
No 4
>d1w7ja1 b.34.3.1 (A:5-62) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=16.37 E-value=24 Score=18.61 Aligned_cols=16 Identities=19% Similarity=0.648 Sum_probs=11.1
Q ss_pred cCCcccccccccccee
Q psy15503 56 LEDIKYCWMNDAHSRW 71 (157)
Q Consensus 56 y~~~~~CWl~~~~~~~ 71 (157)
|..+..||+.+...-|
T Consensus 3 Y~kgtRvWiPd~e~vW 18 (58)
T d1w7ja1 3 YTKYARVWIPDPEEVW 18 (58)
T ss_dssp CCTTCEEEEEETTTEE
T ss_pred cccCcEEEEECccccE
Confidence 6677889998754433
No 5
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=11.51 E-value=12 Score=17.79 Aligned_cols=12 Identities=17% Similarity=0.864 Sum_probs=9.3
Q ss_pred hhhcccceeeeE
Q psy15503 35 FIGWVVPLIITS 46 (157)
Q Consensus 35 ~~gwg~P~~iv~ 46 (157)
+.||..|+++.+
T Consensus 17 vv~wl~p~vvMg 28 (38)
T d1jb0i_ 17 VVCWLMPTVVMG 28 (38)
T ss_dssp HHHTHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 689999987654
No 6
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=10.95 E-value=1.4e+02 Score=17.08 Aligned_cols=6 Identities=17% Similarity=0.335 Sum_probs=2.5
Q ss_pred HHHHHH
Q psy15503 92 LRVLLT 97 (157)
Q Consensus 92 ~~~l~~ 97 (157)
++.+.+
T Consensus 54 ~~~~~~ 59 (107)
T d3ehbb2 54 LICIVR 59 (107)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 344443
No 7
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.32 E-value=98 Score=15.96 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=15.6
Q ss_pred CChhhHHHHHHHHhchhhhhcc
Q psy15503 106 PAPIGIRKAARAALILVPLFGL 127 (157)
Q Consensus 106 ~~~~~~~~~~r~~~~L~~llG~ 127 (157)
.++++.++..+++..=+.++|+
T Consensus 18 P~~~Ef~~ia~v~~iG~~i~G~ 39 (56)
T d1rh5b_ 18 PTKDEYLAVAKVTALGISLLGI 39 (56)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888877666666664
No 8
>d3b2ua2 g.3.9.1 (A:481-502) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.57 E-value=69 Score=13.47 Aligned_cols=8 Identities=25% Similarity=0.684 Sum_probs=5.6
Q ss_pred Cccccccc
Q psy15503 58 DIKYCWMN 65 (157)
Q Consensus 58 ~~~~CWl~ 65 (157)
+++.||=.
T Consensus 7 ssegcwgp 14 (26)
T d3b2ua2 7 SPEGCWGP 14 (26)
T ss_dssp CTTCBSSS
T ss_pred CcCcccCC
Confidence 56789954
No 9
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.50 E-value=1.7e+02 Score=17.38 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=14.6
Q ss_pred hhHHHhH---------HHHHHHHHHHHhh
Q psy15503 4 NYFWMFC---------EGLHLHLALVVVF 23 (157)
Q Consensus 4 sf~Wm~v---------e~~~l~~~lv~~~ 23 (157)
.+.|.++ +|+.+...+.+..
T Consensus 40 ~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~ 68 (124)
T d2pqrb1 40 NYAWGLIKSTDVNDERLGVKILTDIYKEA 68 (124)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHhcC
Confidence 3568887 6888888887653
No 10
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.62 E-value=40 Score=16.73 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=10.4
Q ss_pred hhhhhhhhcccceeee
Q psy15503 30 MRWFHFIGWVVPLIIT 45 (157)
Q Consensus 30 ~~~~~~~gwg~P~~iv 45 (157)
+..|+--|.+.|.++|
T Consensus 24 m~~~fGsgfa~PF~iv 39 (46)
T d1v54l_ 24 MTLFFGSGFAAPFFIV 39 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchHHHH
Confidence 3346667788887654
Done!