RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15503
         (157 letters)



>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
           5' phosphat external aldimine, chloroplast, pyridox
           phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
           3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
           3eia_A*
          Length = 432

 Score = 26.0 bits (58), Expect = 5.8
 Identities = 5/28 (17%), Positives = 9/28 (32%)

Query: 92  LRVLLTKLHSNSTNPAPIGIRKAARAAL 119
           +     ++     N A    +  A A L
Sbjct: 296 VAKDFNRIICTCFNGASNISQAGALACL 323


>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
           aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
           3asb_A*
          Length = 400

 Score = 26.0 bits (58), Expect = 5.9
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 95  LLTKLHSNSTNPAPIGIRKAARAAL 119
              +  S + N A I  ++A  A L
Sbjct: 265 DWERFLSTTFNGASIPAQEAGVAGL 289


>2nrl_A Myoglobin; transport protein; HET: HEM; 0.91A {Thunnus atlanticus}
           PDB: 2nx0_A* 3qm5_A* 3qm6_A* 3qm7_A* 3qm8_A* 3qm9_A*
           3qma_A* 1myt_A* 2nrm_A*
          Length = 147

 Score = 25.5 bits (55), Expect = 7.3
 Identities = 12/108 (11%), Positives = 28/108 (25%), Gaps = 9/108 (8%)

Query: 48  YAYVRHTSLEDIKYCWMNDAHSRWILTVPVCLSILVNLAILMNVLRVLLTKLHSNSTNPA 107
           +      +  DI       AH   +L       +L        +L+  L   H+      
Sbjct: 40  FPKFAGIAQADIAGNAAVSAHGATVLKK--LGELLKAKGSHAAILK-PLANSHATKHKIP 96

Query: 108 PIGIRKAARAALILVPLFGLHHILLPFRPEPKSPWEMVYDVFSAVLVS 155
               +  +   + ++                ++    V  +  A L +
Sbjct: 97  INNFKLISEVLVKVM------QEKAGLDAGGQTALRNVMGIIIADLEA 138


>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
           phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
           {Chlamydomonas reinhardtii}
          Length = 449

 Score = 25.7 bits (57), Expect = 9.1
 Identities = 4/28 (14%), Positives = 10/28 (35%)

Query: 92  LRVLLTKLHSNSTNPAPIGIRKAARAAL 119
           +     ++ +   N A   ++    A L
Sbjct: 308 VHADWNRVMTTCFNGASNIVQAGGLACL 335


>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
           {Staphylococcus aureus}
          Length = 404

 Score = 25.6 bits (57), Expect = 9.6
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 96  LTKLHSNSTNPAPIGIRKAARAAL 119
           L K  +++       ++ AA  AL
Sbjct: 275 LKKYQTHTNAGMFGALQDAAIYAL 298


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.141    0.469 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,495,949
Number of extensions: 135698
Number of successful extensions: 302
Number of sequences better than 10.0: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 21
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.4 bits)