RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15503
         (157 letters)



>d2e29a1 d.58.7.5 (A:8-92) ATP-dependent RNA helicase DDX50 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 24.7 bits (54), Expect = 2.7
 Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 3/26 (11%)

Query: 51 VRHTSLEDIKYCWMNDAHSRWILTVP 76
          V  T  E ++  W     S WIL+VP
Sbjct: 62 VPTTESERLQAEW---HDSDWILSVP 84


>d2fbaa1 a.102.1.1 (A:1-492) Glucoamylase {Yeast (Saccharomycopsis
          fibuligera) [TaxId: 4944]}
          Length = 492

 Score = 24.4 bits (52), Expect = 8.9
 Identities = 6/14 (42%), Positives = 7/14 (50%)

Query: 54 TSLEDIKYCWMNDA 67
          TS  D  Y W  D+
Sbjct: 58 TSNPDYYYQWTRDS 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.141    0.469 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 616,534
Number of extensions: 25334
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 16
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (22.9 bits)