BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15505
(2400 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RYT|A Chain A, The Plexin A1 Intracellular Region In Complex With Rac1
pdb|3RYT|B Chain B, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 626
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/618 (61%), Positives = 462/618 (74%), Gaps = 43/618 (6%)
Query: 1632 STENTRVLKNMQEQMDILELRVAAECKEAFAELQTEITDLTGDLTSGGIPFLDYRTYAMM 1691
S + R LK +Q QMD LE RVA ECKEAFAELQT+I +LT DL GIPFLDYRTYAM
Sbjct: 1 SRDADRTLKRLQLQMDNLESRVALECKEAFAELQTDIHELTSDLDGAGIPFLDYRTYAMR 60
Query: 1692 ILFPNSEHHAVLQFERPELLHKEKGLRLFGQLIQNKTFLLLFIRTLESNRYFSMRDRVNV 1751
+LFP E H VL+ E + EK L LFGQL+ K FLL FIRTLE+ R FSMRDR NV
Sbjct: 61 VLFPGIEDHPVLK-EMEVQANVEKSLTLFGQLLTKKHFLLTFIRTLEAQRSFSMRDRGNV 119
Query: 1752 ASLIMVTLQN-------ILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWFTFLL 1804
ASLIM LQ +LK LL++LIEK +E K+HPKLLLRRTESVAEKML++WFTFLL
Sbjct: 120 ASLIMTALQGEMEYATGVLKQLLSDLIEKNLESKNHPKLLLRRTESVAEKMLTNWFTFLL 179
Query: 1805 YKFLRECAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLSEEKLIRHAIDFKPMTV---- 1860
YKFL+ECAGEPL++L+ A+KQQ++KGP+DAIT EARYSLSE+KLIR ID+K +T+
Sbjct: 180 YKFLKECAGEPLFMLYCAIKQQMEKGPIDAITGEARYSLSEDKLIRQQIDYKTLTLNCVN 239
Query: 1861 --------------------YVKEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILY 1900
VKEK LD +Y+ PYS RP+ D+D+EWR G R+IL
Sbjct: 240 PEHENAPEVPVKGLNCDTVTQVKEKLLDAVYKGVPYSQRPKAGDMDLEWRQGRMARIILQ 299
Query: 1901 DYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQ---YNLS---ILSEKTDKYETLNLS 1954
D D TTK++ +WK++NTL HY+V DG + LV KQ YN+S ++ +YE++ +
Sbjct: 300 DEDVTTKIDNDWKRLNTLAHYQVTDGSSVALVPKQTSAYNISNSSTFTKSLSRYESMLRT 359
Query: 1955 KMG----RNTSPL-NRDHDGMAKEWHLVKHHDSDNQKEGERSNKMVSEIYLTRLLATKGT 2009
R+ +P+ D + K WHLVK+HD +Q+EG+R +KMVSEIYLTRLLATKGT
Sbjct: 360 ASSPDSLRSRTPMITPDLESGTKLWHLVKNHDHLDQREGDRGSKMVSEIYLTRLLATKGT 419
Query: 2010 LQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRF 2069
LQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLD+QA H I D +V HTWKSN LPLRF
Sbjct: 420 LQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDEQADKHQIHDSDVRHTWKSNCLPLRF 479
Query: 2070 WVNLIKNPNFVFDIHKSNIVDSCLSVVAQTFMDSCSTSDHRLGKDSPSSKLLYAKDIPAY 2129
WVN+IKNP FVFDIHK++I D+CLSVVAQTFMDSCSTS+H+LGKDSPS+KLLYAKDIP Y
Sbjct: 480 WVNVIKNPQFVFDIHKNSITDACLSVVAQTFMDSCSTSEHKLGKDSPSNKLLYAKDIPNY 539
Query: 2130 KEWVERYYSDIKSMQAISDQDMNAMLAEESRLHNSEFSTNCALYELYTYASKYNEQLTVT 2189
K WVERYY+DI M AISDQDM+A LAE+SRLH S+F++ AL+E+Y+Y +KY +++ V
Sbjct: 540 KSWVERYYADIAKMPAISDQDMSAYLAEQSRLHLSQFNSMSALHEIYSYIAKYKDEILVA 599
Query: 2190 LEEDEFSQKQRLAYKLEQ 2207
LE+DE +++QRL KLEQ
Sbjct: 600 LEKDEQARRQRLRSKLEQ 617
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 349 STENTRVLKNMQEQMDILELRVAAECK 375
S + R LK +Q QMD LE RVA ECK
Sbjct: 1 SRDADRTLKRLQLQMDNLESRVALECK 27
>pdb|3IG3|A Chain A, Crystal Strucure Of Mouse Plexin A3 Intracellular Domain
Length = 627
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/614 (59%), Positives = 451/614 (73%), Gaps = 45/614 (7%)
Query: 1637 RVLKNMQEQMDILELRVAAECKEAFAELQTEITDLTGDLTSGGIPFLDYRTYAMMILFPN 1696
R LK +Q QMD LE RVA ECKEAFAELQT+I +LT + IPFLDYRTYA+ +LFP
Sbjct: 7 RTLKRLQLQMDNLESRVALECKEAFAELQTDINELTNHMDGVQIPFLDYRTYAVRVLFPG 66
Query: 1697 SEHHAVL-QFERPELLHKEKGLRLFGQLIQNKTFLLLFIRTLESNRYFSMRDRVNVASLI 1755
E H VL + + P + EK LRLFGQL+ ++ FLL FI TLE+ FSMRDR VASL
Sbjct: 67 IEAHPVLKELDTPP--NVEKALRLFGQLLHSRAFLLTFIHTLEAQSSFSMRDRGTVASLT 124
Query: 1756 MVTLQN-------ILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWFTFLLYKFL 1808
MV LQ+ +LK LLA+LIEK +E K+HPKLLLRRTESVAEKML++WFTFLL+KFL
Sbjct: 125 MVALQSRLDYATGLLKQLLADLIEKNLESKNHPKLLLRRTESVAEKMLTNWFTFLLHKFL 184
Query: 1809 RECAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLSEEKLIRHAIDFKPMTVY------- 1861
+ECAGEPL+LL+ A+KQQ++KGP+DAIT EARYSLSE+KLIR ID+K +T++
Sbjct: 185 KECAGEPLFLLYCAIKQQMEKGPIDAITGEARYSLSEDKLIRQQIDYKTLTLHCVCPESE 244
Query: 1862 -----------------VKEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDS 1904
K+K LDT+Y+ PYS RP+ +D+D+EWR G R+IL D D
Sbjct: 245 GSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDI 304
Query: 1905 TTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQ---YNLS---ILSEKTDKYETLNLSKMG- 1957
TTK+E +WK+VN+L HY+V DG + LV KQ YN++ + +YE+L +
Sbjct: 305 TTKIECDWKRVNSLAHYQVTDGSLVALVPKQVSAYNMANSFTFTRSLSRYESLLRAASSP 364
Query: 1958 ---RNTSP-LNRDHDGMAKEWHLVKHHDSDNQKEGERSNKMVSEIYLTRLLATKGTLQKF 2013
R+ +P L D + K WHLV++HD + +EG+R +KMVSEIYLTRLLATKGTLQKF
Sbjct: 365 DSLRSRAPMLTPDQEAGTKLWHLVRNHDHTDHREGDRGSKMVSEIYLTRLLATKGTLQKF 424
Query: 2014 VDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNL 2073
VDDLFET+FSTAHRGSALPLAIKYMFDFLD+QA I+DP+V HTWKSN LPLRFWVN+
Sbjct: 425 VDDLFETVFSTAHRGSALPLAIKYMFDFLDEQADQRQISDPDVRHTWKSNCLPLRFWVNV 484
Query: 2074 IKNPNFVFDIHKSNIVDSCLSVVAQTFMDSCSTSDHRLGKDSPSSKLLYAKDIPAYKEWV 2133
IKNP FVFDIHK++I D+CLSVVAQTFMDSCSTS+HRLGKDSPS+KLLYAKDIP YK WV
Sbjct: 485 IKNPQFVFDIHKNSITDACLSVVAQTFMDSCSTSEHRLGKDSPSNKLLYAKDIPNYKSWV 544
Query: 2134 ERYYSDIKSMQAISDQDMNAMLAEESRLHNSEFSTNCALYELYTYASKYNEQLTVTLEED 2193
ERYY DI M +ISDQDM+A L E+SRLH ++F+ AL ELY Y +KY +++ +L+ D
Sbjct: 545 ERYYRDIAKMASISDQDMDAYLVEQSRLHANDFNVLSALSELYFYVTKYRQEILTSLDRD 604
Query: 2194 EFSQKQRLAYKLEQ 2207
+K +L KLEQ
Sbjct: 605 ASCRKHKLRQKLEQ 618
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 354 RVLKNMQEQMDILELRVAAECK 375
R LK +Q QMD LE RVA ECK
Sbjct: 7 RTLKRLQLQMDNLESRVALECK 28
>pdb|3HM6|X Chain X, Crystal Structure Of The Cytoplasmic Domain Of Human Plexin
B1
Length = 644
Score = 541 bits (1395), Expect = e-153, Method: Compositional matrix adjust.
Identities = 287/633 (45%), Positives = 394/633 (62%), Gaps = 65/633 (10%)
Query: 1628 YRRKSTENTRVLKNMQEQMDILELRVAAECKEAFAELQTEITDLTGDLTSGGIPFLDYRT 1687
YRRKS + R K +Q Q++ LE V CK+ F +L TE+TDLT DL GIPFLDY+
Sbjct: 20 YRRKSKQALRDYKKVQIQLENLESSVRDRCKKEFTDLMTEMTDLTSDLLGSGIPFLDYKV 79
Query: 1688 YAMMILFPNSEHH------AVLQFERPELLHKEKGLRLFGQLIQNKTFLLLFIRTLESNR 1741
YA I FP V + RP + E+GL L+ +K FL FI TLE+ R
Sbjct: 80 YAERIFFPGHRESPLHRDLGVPESRRPTV---EQGLGQLSNLLNSKLFLTKFIHTLETQR 136
Query: 1742 YFSMRDRVNVASLIMVTLQ-------NILKTLLAELIEKCMEGKSHPKLLLRRTESVAEK 1794
FS RDR VASL+ V L +IL+TLL++L+ + + +PKL+LRRTE+V EK
Sbjct: 137 TFSARDRAYVASLLTVALHGKLEYFTDILRTLLSDLVAQYV--AKNPKLMLRRTETVVEK 194
Query: 1795 MLSSWFTFLLYKFLRECAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLSEEKLIRHAID 1854
+L++W + LY F+R+ GEPLY+LFR +K QVDKGPVD++T +A+Y+L++ +L+R ++
Sbjct: 195 LLTNWMSICLYTFVRDSVGEPLYMLFRGIKHQVDKGPVDSVTGKAKYTLNDNRLLREDVE 254
Query: 1855 FKPMTV---------------------------YVKEKSLDTIYRATPYSLRPRKDDLDV 1887
++P+T+ KEK LD +Y+ P + RP LDV
Sbjct: 255 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDV 314
Query: 1888 EWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQYNLSILSEKTDK 1947
EWR+G G LIL D D T++V+G W+++NTL HY+VPDG + LV +L E D
Sbjct: 315 EWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVALVPC-LTKHVLRENQDY 373
Query: 1948 YETLNLSKMGRNTSPLNRDHDGMAKEWHLVKHHDS--------DNQKEGERSN-KMVSEI 1998
G T L +G + WHLVK D + + GER K + EI
Sbjct: 374 VP-------GERTPMLEDVDEGGIRPWHLVKPSDEPEPPRPRRGSLRGGERERAKAIPEI 426
Query: 1999 YLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVH 2058
YLTRLL+ KGTLQKFVDDLF+ I ST+ +PLA+KY FD LD+QA HGI+D + +H
Sbjct: 427 YLTRLLSMKGTLQKFVDDLFQVILSTSR---PVPLAVKYFFDLLDEQAQQHGISDQDTIH 483
Query: 2059 TWKSNSLPLRFWVNLIKNPNFVFDIHKSNIVDSCLSVVAQTFMDSCSTSDHRLGKDSPSS 2118
WK+NSLPLRFW+N+IKNP FVFD+ S+ +D+ L V+AQTFMD+C+ +DH+LG+DSP +
Sbjct: 484 IWKTNSLPLRFWINIIKNPQFVFDVQTSDNMDAVLLVIAQTFMDACTLADHKLGRDSPIN 543
Query: 2119 KLLYAKDIPAYKEWVERYYSDIKSMQAISDQDMNAMLAEESRLHNSEFSTNCALYELYTY 2178
KLLYA+DIP YK VERYY+DI+ SDQ+MN++LAE S ++ + AL+ELY Y
Sbjct: 544 KLLYARDIPRYKRMVERYYADIRQTVPASDQEMNSVLAELSWNYSGDLGARVALHELYKY 603
Query: 2179 ASKYNEQLTVTLEEDEFSQKQRLAYKLEQKSNA 2211
+KY +Q+ LEED +QK +L Y+L+Q + A
Sbjct: 604 INKYYDQIITALEEDGTAQKMQLGYRLQQIAAA 636
>pdb|3SUA|D Chain D, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|E Chain E, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|F Chain F, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
Length = 633
Score = 541 bits (1394), Expect = e-153, Method: Compositional matrix adjust.
Identities = 287/633 (45%), Positives = 394/633 (62%), Gaps = 65/633 (10%)
Query: 1628 YRRKSTENTRVLKNMQEQMDILELRVAAECKEAFAELQTEITDLTGDLTSGGIPFLDYRT 1687
YRRKS + R K +Q Q++ LE V CK+ F +L TE+TDLT DL GIPFLDY+
Sbjct: 9 YRRKSKQALRDYKKVQIQLENLESSVRDRCKKEFTDLMTEMTDLTSDLLGSGIPFLDYKV 68
Query: 1688 YAMMILFPNSEHH------AVLQFERPELLHKEKGLRLFGQLIQNKTFLLLFIRTLESNR 1741
YA I FP V + RP + E+GL L+ +K FL FI TLE+ R
Sbjct: 69 YAERIFFPGHRESPLHRDLGVPESRRPTV---EQGLGQLSNLLNSKLFLTKFIHTLETQR 125
Query: 1742 YFSMRDRVNVASLIMVTLQ-------NILKTLLAELIEKCMEGKSHPKLLLRRTESVAEK 1794
FS RDR VASL+ V L +IL+TLL++L+ + + +PKL+LRRTE+V EK
Sbjct: 126 TFSARDRAYVASLLTVALHGKLEYFTDILRTLLSDLVAQYV--AKNPKLMLRRTETVVEK 183
Query: 1795 MLSSWFTFLLYKFLRECAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLSEEKLIRHAID 1854
+L++W + LY F+R+ GEPLY+LFR +K QVDKGPVD++T +A+Y+L++ +L+R ++
Sbjct: 184 LLTNWMSICLYTFVRDSVGEPLYMLFRGIKHQVDKGPVDSVTGKAKYTLNDNRLLREDVE 243
Query: 1855 FKPMTV---------------------------YVKEKSLDTIYRATPYSLRPRKDDLDV 1887
++P+T+ KEK LD +Y+ P + RP LDV
Sbjct: 244 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDV 303
Query: 1888 EWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQYNLSILSEKTDK 1947
EWR+G G LIL D D T++V+G W+++NTL HY+VPDG + LV +L E D
Sbjct: 304 EWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVALVPC-LTKHVLRENQDY 362
Query: 1948 YETLNLSKMGRNTSPLNRDHDGMAKEWHLVKHHDS--------DNQKEGERSN-KMVSEI 1998
G T L +G + WHLVK D + + GER K + EI
Sbjct: 363 VP-------GERTPMLEDVDEGGIRPWHLVKPSDEPEPPRPRRGSLRGGERERAKAIPEI 415
Query: 1999 YLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVH 2058
YLTRLL+ KGTLQKFVDDLF+ I ST+ +PLA+KY FD LD+QA HGI+D + +H
Sbjct: 416 YLTRLLSMKGTLQKFVDDLFQVILSTSR---PVPLAVKYFFDLLDEQAQQHGISDQDTIH 472
Query: 2059 TWKSNSLPLRFWVNLIKNPNFVFDIHKSNIVDSCLSVVAQTFMDSCSTSDHRLGKDSPSS 2118
WK+NSLPLRFW+N+IKNP FVFD+ S+ +D+ L V+AQTFMD+C+ +DH+LG+DSP +
Sbjct: 473 IWKTNSLPLRFWINIIKNPQFVFDVQTSDNMDAVLLVIAQTFMDACTLADHKLGRDSPIN 532
Query: 2119 KLLYAKDIPAYKEWVERYYSDIKSMQAISDQDMNAMLAEESRLHNSEFSTNCALYELYTY 2178
KLLYA+DIP YK VERYY+DI+ SDQ+MN++LAE S ++ + AL+ELY Y
Sbjct: 533 KLLYARDIPRYKRMVERYYADIRQTVPASDQEMNSVLAELSWNYSGDLGARVALHELYKY 592
Query: 2179 ASKYNEQLTVTLEEDEFSQKQRLAYKLEQKSNA 2211
+KY +Q+ LEED +QK +L Y+L+Q + A
Sbjct: 593 INKYYDQIITALEEDGTAQKMQLGYRLQQIAAA 625
>pdb|3SU8|X Chain X, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 611
Score = 525 bits (1352), Expect = e-148, Method: Compositional matrix adjust.
Identities = 277/611 (45%), Positives = 380/611 (62%), Gaps = 65/611 (10%)
Query: 1650 ELRVAAECKEAFAELQTEITDLTGDLTSGGIPFLDYRTYAMMILFPNSEHH------AVL 1703
E V CK+ F +L TE+TDLT DL GIPFLDY+ YA I FP V
Sbjct: 9 ESSVRDRCKKEFTDLMTEMTDLTSDLLGSGIPFLDYKVYAERIFFPGHRESPLHRDLGVP 68
Query: 1704 QFERPELLHKEKGLRLFGQLIQNKTFLLLFIRTLESNRYFSMRDRVNVASLIMVTLQ--- 1760
+ RP + E+GL L+ +K FL FI TLE+ R FS RDR VASL+ V L
Sbjct: 69 ESRRPTV---EQGLGQLSNLLNSKLFLTKFIHTLETQRTFSARDRAYVASLLTVALHGKL 125
Query: 1761 ----NILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWFTFLLYKFLRECAGEPL 1816
+IL+TLL++L+ + + +PKL+LRRTE+V EK+L++W + LY F+R+ GEPL
Sbjct: 126 EYFTDILRTLLSDLVAQYV--AKNPKLMLRRTETVVEKLLTNWMSICLYTFVRDSVGEPL 183
Query: 1817 YLLFRAMKQQVDKGPVDAITAEARYSLSEEKLIRHAIDFKPMTV---------------- 1860
Y+LFR +K QVDKGPVD++T +A+Y+L++ +L+R ++++P+T+
Sbjct: 184 YMLFRGIKHQVDKGPVDSVTGKAKYTLNDNRLLREDVEYRPLTLNALLAVGPGAGEAQGV 243
Query: 1861 -----------YVKEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVE 1909
KEK LD +Y+ P + RP LDVEWR+G G LIL D D T++V+
Sbjct: 244 PVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQ 303
Query: 1910 GEWKKVNTLNHYRVPDGGCLNLVSKQYNLSILSEKTDKYETLNLSKMGRNTSPLNRDHDG 1969
G W+++NTL HY+VPDG + LV +L E D G T L +G
Sbjct: 304 GLWRRLNTLQHYKVPDGATVALVPC-LTKHVLRENQDYVP-------GERTPMLEDVDEG 355
Query: 1970 MAKEWHLVKHHDS--------DNQKEGERSN-KMVSEIYLTRLLATKGTLQKFVDDLFET 2020
+ WHLVK D + + GER K + EIYLTRLL+ KGTLQKFVDDLF+
Sbjct: 356 GIRPWHLVKPSDEPEPPRPRRGSLRGGERERAKAIPEIYLTRLLSMKGTLQKFVDDLFQV 415
Query: 2021 IFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLIKNPNFV 2080
I ST+ +PLA+KY FD LD+QA HGI+D + +H WK+NSLPLRFW+N+IKNP FV
Sbjct: 416 ILSTSR---PVPLAVKYFFDLLDEQAQQHGISDQDTIHIWKTNSLPLRFWINIIKNPQFV 472
Query: 2081 FDIHKSNIVDSCLSVVAQTFMDSCSTSDHRLGKDSPSSKLLYAKDIPAYKEWVERYYSDI 2140
FD+ S+ +D+ L V+AQTFMD+C+ +DH+LG+DSP +KLLYA+DIP YK VERYY+DI
Sbjct: 473 FDVQTSDNMDAVLLVIAQTFMDACTLADHKLGRDSPINKLLYARDIPRYKRMVERYYADI 532
Query: 2141 KSMQAISDQDMNAMLAEESRLHNSEFSTNCALYELYTYASKYNEQLTVTLEEDEFSQKQR 2200
+ SDQ+MN++LAE S ++ + AL+ELY Y +KY +Q+ LEED +QK +
Sbjct: 533 RQTVPASDQEMNSVLAELSWNYSGDLGARVALHELYKYINKYYDQIITALEEDGTAQKMQ 592
Query: 2201 LAYKLEQKSNA 2211
L Y+L+Q + A
Sbjct: 593 LGYRLQQIAAA 603
>pdb|3OKT|A Chain A, Mouse Plexin A2, Extracellular Domains 1-4
pdb|3OKY|A Chain A, Plexin A2 In Complex With Semaphorin 6a
pdb|4GZA|A Chain A, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
pdb|4GZA|B Chain B, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
pdb|4GZA|C Chain C, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
pdb|4GZA|D Chain D, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
pdb|4GZA|E Chain E, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
pdb|4GZA|F Chain F, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
Length = 681
Score = 196 bits (498), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/344 (32%), Positives = 194/344 (56%), Gaps = 25/344 (7%)
Query: 438 MYVGVTFTGNSPYRSEVPSIASRSL--DPERM----FQIADSAVTTGTRMFVNNLAR-ER 490
+++G G Y P+++SR L DPE +++ V++ ++ + LA
Sbjct: 151 LFIGTAVDGKQDY---FPTLSSRKLPRDPESSAMLDYELHSDFVSSLIKIPSDTLALVSH 207
Query: 491 YIINYVYGFSSEGFSYFLTTQLKS-------NIGTSFYISKLVRICHDDSNYYSYTEIPI 543
+ I Y+YGF+S GF YFLT Q ++ + G FY S++VR+C DD ++SY +P
Sbjct: 208 FDIFYIYGFASGGFVYFLTVQPETPDGMAINSAGDLFYTSRIVRLCKDDPKFHSYVSLPF 267
Query: 544 TCNSNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRPKNSS 603
C + +G +Y L+QA ++ KPG LA I++ +DVLFA+F++ + + + P + S
Sbjct: 268 GC-TRAGVEYRLLQAAYLAKPGEALAQAFNISSDEDVLFAIFSKGQ----KQYHHPPDDS 322
Query: 604 ALCIYPLASIRRKFMQNIKTCFSGQGNRGLDFISPAHPCVQTKLQTIGEDFCGLDVNTPL 663
ALC +P+ +I + + +++C+ G+GN L+++ I ++FCGLD+N PL
Sbjct: 323 ALCAFPIRAINLQIKERLQSCYHGEGNLELNWLLGKDVQCTKAPVPIDDNFCGLDINQPL 382
Query: 664 GGENPIEAVAVLNFSV-RCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSSI-AIEYGDV 721
GG P+E + + S R T+VA+ Y+VVF+GT +G LKK+ + ++Y V
Sbjct: 383 GGSTPVEGLTLYTTSRDRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMV 442
Query: 722 KV-DENMTVNADLHLDSKAMHLYVMTERRVSKVKVQECKVYKTC 764
V + + D+ ++LYVM+ER+V++V V+ C+ Y TC
Sbjct: 443 SVFKDGSPILRDMAFSINQLYLYVMSERQVTRVPVESCEQYTTC 486
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 88/172 (51%), Gaps = 12/172 (6%)
Query: 1088 QTLTCWDCLNRKDPYCGWCSLDNKCSLRSDCQDAAKDPLSWISYKSGRCTTITSVTPNQL 1147
Q TC +CL+ DP+CGWC+L N CS R CQ A + + + +C ++ V PN +
Sbjct: 482 QYTTCGECLSSGDPHCGWCALHNMCSRRDKCQRAWE--ANRFAASISQCMSL-EVHPNSI 538
Query: 1148 QRTT-ARTLDLAIENLPKLPGQFLCAFTIAEKTLTTEAVKKTNG--VGCITPRTDFLPSI 1204
+ +R L L + + P L CAF TE + +G V CI+P +P I
Sbjct: 539 SVSDHSRLLSLVVNDAPNLSEGIACAFGN-----LTEVEGQVSGSQVICISPGPKDVPVI 593
Query: 1205 PVGQHNITAKLSVRS-SNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDCIK 1255
P+ Q +L +RS G FV+T+F F++C+ + C CV+S F C K
Sbjct: 594 PLDQDWFGLELQLRSKETGKIFVSTEFKFYNCSAHQLCLSCVNSAFRCHWCK 645
>pdb|3AL8|B Chain B, Plexin A2 SEMAPHORIN 6A COMPLEX
pdb|3AL9|A Chain A, Mouse Plexin A2 Extracellular Domain
pdb|3AL9|B Chain B, Mouse Plexin A2 Extracellular Domain
Length = 539
Score = 196 bits (498), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/348 (33%), Positives = 198/348 (56%), Gaps = 27/348 (7%)
Query: 438 MYVGVTFTGNSPYRSEVPSIASRSL--DPERM----FQIADSAVTTGTRMFVNNLAR-ER 490
+++G G Y P+++SR L DPE +++ V++ ++ + LA
Sbjct: 152 LFIGTAVDGKQDY---FPTLSSRKLPRDPESSAMLDYELHSDFVSSLIKIPSDTLALVSH 208
Query: 491 YIINYVYGFSSEGFSYFLTTQLKS-------NIGTSFYISKLVRICHDDSNYYSYTEIPI 543
+ I Y+YGF+S GF YFLT Q ++ + G FY S++VR+C DD ++SY +P
Sbjct: 209 FDIFYIYGFASGGFVYFLTVQPETPDGMAINSAGDLFYTSRIVRLCKDDPKFHSYVSLPF 268
Query: 544 TCNSNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRPKNSS 603
C + +G +Y L+QA ++ KPG LA I++ +DVLFA+F++ + + + P + S
Sbjct: 269 GC-TRAGVEYRLLQAAYLAKPGEALAQAFNISSDEDVLFAIFSKGQ----KQYHHPPDDS 323
Query: 604 ALCIYPLASIRRKFMQNIKTCFSGQGNRGLDFISPAHPCVQTKLQTIGEDFCGLDVNTPL 663
ALC +P+ +I + + +++C+ G+GN L+++ I ++FCGLD+N PL
Sbjct: 324 ALCAFPIRAINLQIKERLQSCYHGEGNLELNWLLGKDVQCTKAPVPIDDNFCGLDINQPL 383
Query: 664 GGENPIEAVAVLNFSV-RCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSSI-AIEYGDV 721
GG P+E + + S R T+VA+ Y+VVF+GT +G LKK+ + ++Y V
Sbjct: 384 GGSTPVEGLTLYTTSRDRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMV 443
Query: 722 KVDENMT-VNADLHLDSKAMHLYVMTERRVSKVKVQECKVYKTC--CL 766
V ++ + + D+ ++LYVM+ER+V++V V+ C+ Y TC CL
Sbjct: 444 SVFKDGSPILRDMAFSINQLYLYVMSERQVTRVPVESCEQYTTCGECL 491
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 1088 QTLTCWDCLNRKDPYCGWCSLDNKCSLRSDCQDA 1121
Q TC +CL+ DP+CGWC+L N CS R CQ A
Sbjct: 483 QYTTCGECLSSGDPHCGWCALHNMCSRRDKCQRA 516
>pdb|3OL2|B Chain B, Receptor-Ligand Structure Of Human Semaphorin 4d With
Plexin B1
Length = 528
Score = 124 bits (312), Expect = 5e-28, Method: Composition-based stats.
Identities = 118/422 (27%), Positives = 185/422 (43%), Gaps = 56/422 (13%)
Query: 385 LILCVS---GTCTVRSLQNISDIVQNVR-----EAVVANNGNASTFAFIAPGPPKPPSTH 436
L++C S G C R L + ++ + V AN+ ST +A G P
Sbjct: 92 LVVCGSVHQGVCEQRRLGQLEQLLLRPERPGDTQYVAANDPAVSTVGLVAQGLAGEP--- 148
Query: 437 VMYVGVTFTGNSPYRSEVPSIASRSL---DPERMFQIADSAVTTGTRMFVNNLARERYII 493
+++VG +T +P I +R+L DP+ F ++A ++ V L+ Y
Sbjct: 149 LLFVGRGYTSRG-VGGGIPPITTRALWPPDPQAAFSYEETA-----KLAVGRLSE--YSH 200
Query: 494 NYVYGFSSEGFSYFLTTQLKSNIGTSFYISKLVRICHDDSNYYSYTEIPITCNSNSGKQY 553
++V F+ +YFL + + + + + R+C D +YYSY E+P+ C G +Y
Sbjct: 201 HFVSAFARGASAYFLFLRRDLQAQSRAFRAYVSRVCLRDQHYYSYVELPLAC---EGGRY 257
Query: 554 NLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRP-------KNSSALC 606
L+QA V A +VLFA F+ S AP G RP +SALC
Sbjct: 258 GLIQAAAVATSRE--------VAHGEVLFAAFS-SAAPPTVG--RPPSAAAGASGASALC 306
Query: 607 IYPLASIRRKFMQNIKTCFSGQGNRGLDFISPAH-------PCVQTKLQTIGEDFCGLD- 658
+PL + R + C++ +G R D A+ C Q + T+ CG D
Sbjct: 307 AFPLDEVDRLANRTRDACYTREG-RAEDGTEVAYIEYDVNSDCAQLPVDTLDAYPCGSDH 365
Query: 659 VNTPLGGENPIEAVAVLNF-SVRCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSSIAIE 717
+P+ P+EA +L + ++ TAVA T +T+ F+G G L +V + S
Sbjct: 366 TPSPMASRVPLEATPILEWPGIQLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHP 425
Query: 718 YGDVKVDENMTVNADLHLDSKAMHLYVMTERRVSKVKVQECKVYKTC--CLGFQ-PTIAA 774
Y + + V+ DL D HLYVMT+ + KV V C + C CL + P
Sbjct: 426 YSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKVPVASCAQHLDCASCLAHRDPYCGW 485
Query: 775 CV 776
CV
Sbjct: 486 CV 487
Score = 50.4 bits (119), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 1088 QTLTCWDCLNRKDPYCGWCSLDNKCSLRSDCQDAAKDPLSWI 1129
Q L C CL +DPYCGWC L +CS RS+C + P W+
Sbjct: 468 QHLDCASCLAHRDPYCGWCVLLGRCSRRSECS-RGQGPEQWL 508
Score = 38.1 bits (87), Expect = 0.061, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 871 NCGLCLALPEKYGCGWCQSSKRCEIFEQCDKGLGTWLNRNHTCPNPEITSFQPKSGPWEG 930
+C CLA + Y CGWC RC +C +G G P + SFQP+ G +G
Sbjct: 471 DCASCLAHRDPY-CGWCVLLGRCSRRSECSRGQG---------PEQWLWSFQPELGCLQG 520
>pdb|2UZX|B Chain B, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|D Chain D, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|B Chain B, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|D Chain D, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
Length = 727
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 136/553 (24%), Positives = 239/553 (43%), Gaps = 88/553 (15%)
Query: 444 FTGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVNNLA--RERYIINYVYGFSS 501
F GN+ S P S+ R+ + D + + +++ L R+ Y I YV+ F S
Sbjct: 175 FVGNTINSSYFPDHPLHSISVRRLKETKDGFMFLTDQSYIDVLPEFRDSYPIKYVHAFES 234
Query: 502 EGFSYFLTTQLKSNIGTSFYISKLVRICHDDSNYYSYTEIPITC--------NSNSGKQY 553
F YFLT Q ++ +F+ ++++R C +S +SY E+P+ C S + +
Sbjct: 235 NNFIYFLTVQRETLDAQTFH-TRIIRFCSINSGLHSYMEMPLECILTEKRKKRSTKKEVF 293
Query: 554 NLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRPKNSSALCIYPLASI 613
N++QA +V KPG+ LA +G + DD+LFAVFA+S+ PD S P + SA+C +P+ +
Sbjct: 294 NILQAAYVSKPGAQLARQIGASLNDDILFAVFAQSK-PD---SAEPMDRSAMCAFPIKYV 349
Query: 614 RRKFMQNIKTCFSGQGNRGLD-FISPAHP-CVQTKLQTIGEDFCGLDVNTPLGGENPIEA 671
F + + + R L F P H C +T+ + G + A
Sbjct: 350 NDFFNKIV----NKNNVRCLQHFYGPNHEHCFN---RTLLRNSSGCEARRDEYRTEFTTA 402
Query: 672 VAVLNF------SVRCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSSIAIEYGDVKVDE 725
+ ++ V T+++ GD T+ +GT G +VVV S + + + +D
Sbjct: 403 LQRVDLFMGQFSEVLLTSISTFIKGDLTIANLGTSEGRFMQVVVSRSGPSTPHVNFLLDS 462
Query: 726 NMTVNADL---HLDSKAMHLYVMTERRVSKVKVQ--ECKVYKTC--CLGFQPTIAACVAS 778
+ V+ ++ H ++ + V+T ++++K+ + C+ +++C CL P +
Sbjct: 463 H-PVSPEVIVEHTLNQNGYTLVITGKKITKIPLNGLGCRHFQSCSQCLSAPPFVQCGWCH 521
Query: 779 NSKKAVNVKVHIVGQFIAQTRFVCQFNIEGRVTSVNAQLLGDVIYCDPMEFTYTSRLSNI 838
+ K V + + G + Q +C I +V +A L G +RL+
Sbjct: 522 D--KCVRSEECLSGTWTQQ---ICLPAIY-KVFPNSAPLEGG------------TRLTIC 563
Query: 839 NASFAVIWGGSKPLDNPDNVHVNIYRCRDLANNCGLCLALPEKYGCGWCQSSKRCEIFEQ 898
F N ++ + R L N L L E ++ +C +
Sbjct: 564 GWDFGF----------RRNNKFDLKKTRVLLGNESCTLTLSES-----TMNTLKCTVGPA 608
Query: 899 CDK----------GLGTWLNRNHTCPNPEITSFQPKSGPWEGGTNVTING--INLGKTFK 946
+K G GT + +P ITS PK GP GGT +T+ G +N G +
Sbjct: 609 MNKHFNMSIIISNGHGTTQYSTFSYVDPVITSISPKYGPMAGGTLLTLTGNYLNSGNS-- 666
Query: 947 DIYGGVSVAGITC 959
+S+ G TC
Sbjct: 667 ---RHISIGGKTC 676
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 98/218 (44%), Gaps = 27/218 (12%)
Query: 858 VHVNIYRCRDLANNCGLCLALPEKYGCGWCQSSKRCEIFEQCDKGLGTWLNRNHTCPNPE 917
+ +N CR +C CL+ P CGWC +C E+C G TW + C P
Sbjct: 492 IPLNGLGCRHF-QSCSQCLSAPPFVQCGWCHD--KCVRSEECLSG--TWTQQ--ICL-PA 543
Query: 918 ITSFQPKSGPWEGGTNVTINGINLG---------KTFKDIYGGVSVAGITCQPYESLYNR 968
I P S P EGGT +TI G + G K + + G S T ES N
Sbjct: 544 IYKVFPNSAPLEGGTRLTICGWDFGFRRNNKFDLKKTRVLLGNESC---TLTLSESTMN- 599
Query: 969 TTQIVCQVDGPGTRGSREGPVIVKIEDFRGQSK-DNYQFVDPVIKSIQPLQGPRSGGTIL 1027
+ C V GP +I I + G ++ + +VDPVI SI P GP +GGT+L
Sbjct: 600 --TLKCTV-GPAMNKHFNMSII--ISNGHGTTQYSTFSYVDPVITSISPKYGPMAGGTLL 654
Query: 1028 HISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSA 1065
++G+++N+G+ I C + SV + C T A
Sbjct: 655 TLTGNYLNSGNSRHISIGGKTCTLKSVSNSILECYTPA 692
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 23 GPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSMKF 82
GP +GGT+L ++G+++N+G+ I C + SV + C T A + +K
Sbjct: 646 GPMAGGTLLTLTGNYLNSGNSRHISIGGKTCTLKSVSNSILECYTPAQTISTEFAVKLKI 705
Query: 83 DKGTRFFDGSLYEYVED 99
D R + S++ Y ED
Sbjct: 706 DLANR--ETSIFSYRED 720
>pdb|1SHY|B Chain B, The Crystal Structure Of Hgf Beta-Chain In Complex With
The Sema Domain Of The Met Receptor
Length = 551
Score = 107 bits (267), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 91/354 (25%), Positives = 169/354 (47%), Gaps = 38/354 (10%)
Query: 444 FTGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVNNLA--RERYIINYVYGFSS 501
F GN+ S P S+ R+ + D + + +++ L R+ Y I YV+ F S
Sbjct: 172 FVGNTINSSYFPDHPLHSISVRRLKETKDGFMFLTDQSYIDVLPEFRDSYPIKYVHAFES 231
Query: 502 EGFSYFLTTQLKSNIGTSFYISKLVRICHDDSNYYSYTEIPITC--------NSNSGKQY 553
F YFLT Q ++ +F+ ++++R C +S +SY E+P+ C S + +
Sbjct: 232 NNFIYFLTVQRETLDAQTFH-TRIIRFCSINSGLHSYMEMPLECILTELVPRGSTKKEVF 290
Query: 554 NLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRPKNSSALCIYPLASI 613
N++QA +V KPG+ LA +G + DD+LF VFA+S+ PD S P + SA+C +P+ +
Sbjct: 291 NILQAAYVSKPGAQLARQIGASLNDDILFGVFAQSK-PD---SAEPMDRSAMCAFPIKYV 346
Query: 614 RRKFMQNIKTCFSGQGNRGLD-FISPAHP-CVQTKLQTIGEDFCGLDVNTPLGGENPIEA 671
F + + + R L F P H C +T+ + G + A
Sbjct: 347 NDFFNKIV----NKNNVRCLQHFYGPNHEHCFN---RTLLRNSSGCEARRDEYRTEFTTA 399
Query: 672 VAVLNF------SVRCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSSIAIEYGDVKVDE 725
+ ++ V T+++ GD T+ +GT G +VVV S + + + +D
Sbjct: 400 LQRVDLFMGQFSEVLLTSISTFIKGDLTIANLGTSEGRFMQVVVSRSGPSTPHVNFLLDS 459
Query: 726 NMTVNADL---HLDSKAMHLYVMTERRVSKVKVQ--ECKVYKTC--CLGFQPTI 772
+ V+ ++ H ++ + V+T ++++K+ + C+ +++C CL P +
Sbjct: 460 H-PVSPEVIVEHTLNQNGYTLVITGKKITKIPLNGLGCRHFQSCSQCLSAPPFV 512
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 865 CRDLANNCGLCLALPEKYGCGWCQSSKRCEIFEQCDKGLGTW 906
CR +C CL+ P CGWC +C E+C GTW
Sbjct: 496 CRHF-QSCSQCLSAPPFVQCGWCHD--KCVRSEECLS--GTW 532
>pdb|4E74|A Chain A, Crystal Structure Of The Rho Gtpase Binding Domain Of Plexin
A4a
Length = 117
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 66/114 (57%), Gaps = 24/114 (21%)
Query: 1846 EKLIRHAIDFKPMTV------------------------YVKEKSLDTIYRATPYSLRPR 1881
+KLIR ID+K + + VKEK LD I++ P S RP+
Sbjct: 2 DKLIRQQIDYKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPK 61
Query: 1882 KDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQ 1935
D+D+EWR G+ R+IL D D TTK+E +WK++NTL HY+VPDG + LVSKQ
Sbjct: 62 AADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDGSVVALVSKQ 115
>pdb|3Q3J|A Chain A, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 112
Score = 91.7 bits (226), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 52/73 (71%)
Query: 1862 VKEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHY 1921
VKEK LD +Y+ PYS RPR D+D+EWR G R++L D D TTK+EG+WK++NTL HY
Sbjct: 40 VKEKILDAVYKNVPYSQRPRAVDMDLEWRQGRIARVVLQDEDITTKIEGDWKRLNTLMHY 99
Query: 1922 RVPDGGCLNLVSK 1934
+V D + LV K
Sbjct: 100 QVSDRSVVALVPK 112
>pdb|2R2O|A Chain A, Crystal Structure Of The Effector Domain Of Human Plexin B1
pdb|2R2O|B Chain B, Crystal Structure Of The Effector Domain Of Human Plexin B1
Length = 138
Score = 86.7 bits (213), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 49/70 (70%)
Query: 1863 KEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYR 1922
KEK LD +Y+ P + RP LDVEWR+G G LIL D D T++V+G W+++NTL HY+
Sbjct: 57 KEKXLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYK 116
Query: 1923 VPDGGCLNLV 1932
VPDG + LV
Sbjct: 117 VPDGATVALV 126
>pdb|2REX|A Chain A, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|C Chain C, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 121
Score = 86.7 bits (213), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 49/70 (70%)
Query: 1863 KEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYR 1922
KEK LD +Y+ P + RP LDVEWR+G G LIL D D T++V+G W+++NTL HY+
Sbjct: 40 KEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYK 99
Query: 1923 VPDGGCLNLV 1932
VPDG + LV
Sbjct: 100 VPDGATVALV 109
>pdb|2JPH|A Chain A, Nmr Solution Structure Of The Rho Gtpase Binding Domain Of
Human Plexin-B1
Length = 123
Score = 82.4 bits (202), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 49/70 (70%)
Query: 1863 KEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYR 1922
KEK LD +Y+ P + RP LDVEWR+G G LIL D D T++V+G ++++NTL HY+
Sbjct: 42 KEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLFRRLNTLQHYK 101
Query: 1923 VPDGGCLNLV 1932
VPDG + LV
Sbjct: 102 VPDGATVALV 111
>pdb|4E71|A Chain A, Crystal Structure Of The Rho Gtpase Binding Domain Of Plexin
B2
Length = 111
Score = 75.5 bits (184), Expect = 3e-13, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 1862 VKEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHY 1921
VKEK +D +YR P S PR D + +EWR G+T + IL D D T++ EG WK+VNTL HY
Sbjct: 39 VKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQ-ILSDLDLTSQREGRWKRVNTLMHY 97
Query: 1922 RVPDGGCLNL 1931
V DG L L
Sbjct: 98 NVRDGATLIL 107
>pdb|3H6N|A Chain A, Crystal Structure Of The Ubiquitin-Like Domain Of Plexin D1
Length = 127
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 1862 VKEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHY 1921
VKEK L+ + PYS PR +D+D+EW +T IL D D T+ VE KK+NTL HY
Sbjct: 32 VKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHY 91
Query: 1922 RVPDGGCL--NLVSKQYN 1937
++P+G L +L+ K+ N
Sbjct: 92 KIPEGASLAXSLIDKKDN 109
>pdb|4FWW|A Chain A, Crystal Structure Of The Sema-Psi Extracellular Domains Of
Human Ron Receptor Tyrosine Kinase
Length = 527
Score = 53.9 bits (128), Expect = 1e-06, Method: Composition-based stats.
Identities = 60/244 (24%), Positives = 96/244 (39%), Gaps = 41/244 (16%)
Query: 491 YIINYVYGFSSEGFSYFLTTQLKS-NIGTSFYISKLVRICHDDSNYYSYTEIPITC---- 545
Y I YV+ F + F YFLT Q S S ++L R+ + Y E+ + C
Sbjct: 204 YSIEYVHSFHTGAFVYFLTVQPASVTDDPSALHTRLARLSATEPELGDYRELVLDCRFAP 263
Query: 546 ------NSNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRP 599
+ G+ Y ++Q G+ LA +L I +VLF VF + DG P
Sbjct: 264 KLVPRGSPEGGQPYPVLQVAHSAPVGAQLATELSIAEGQEVLFGVFVTGK--DGGPGVGP 321
Query: 600 KNSSALCIYPLASIRRKFMQNIKTCFSGQGNRGLDFISPAHPCVQTKLQTI-GEDFC--- 655
+S +C +P+ + + ++ C SP HP ++ L FC
Sbjct: 322 --NSVVCAFPIDLLDTLIDEGVERCCE----------SPVHPGLRRGLDFFQSPSFCPNP 369
Query: 656 -GLDVNTPLGGENPIEAVAVLNFS-----------VRCTAVAATSTGDYTVVFIGTDTGH 703
GL+ +P + +FS V+ TA+ T + TV +GT G
Sbjct: 370 PGLEALSPNTSCRHFPLLVSSSFSRVDLFNGLLGPVQVTALYVTRLDNVTVAHMGTMDGR 429
Query: 704 LKKV 707
+ +V
Sbjct: 430 ILQV 433
>pdb|3NVQ|A Chain A, Molecular Mechanism Of Guidance Cue Recognition
pdb|3NVQ|E Chain E, Molecular Mechanism Of Guidance Cue Recognition
Length = 590
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 120/305 (39%), Gaps = 60/305 (19%)
Query: 492 IINYVYGFSSEGFSYFLTTQLKSNIGTSFYISKLVRICHDD---------SNYYSYTEIP 542
I++ + + + +F N +S++ ++C D S + ++ +
Sbjct: 185 IVHQDQAYDDKIYYFFREDNPDKNPEAPLNVSRVAQLCRGDQGGESSLSVSKWNTFLKAM 244
Query: 543 ITC-NSNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRPKN 601
+ C ++ + K +N +Q F L D +D ++ VF+ P N
Sbjct: 245 LVCSDAATNKNFNRLQDVF-------LLPDPSGQWRDTRVYGVFSN-----------PWN 286
Query: 602 SSALCIYPLASIRRKF-----------MQNIK--TCFSGQGNRGLDFISPA--HPCVQTK 646
SA+C+Y L I + F + N + C Q + A HP V +
Sbjct: 287 YSAVCVYSLGDIDKVFRTSSLKGYHSSLPNPRPGKCLPDQQPIPTETFQVADRHPEVAQR 346
Query: 647 LQTIGEDFCGLDVNTPL-GGENPIEAVAVLNFSVRCTAVAATSTGDYTVVFIGTDTGHLK 705
++ +G + TPL + + VAV + A+ + V+++ TD G +
Sbjct: 347 VEPMGP------LKTPLFHSKYHYQKVAVHR-------MQASHGETFHVLYLTTDRGTIH 393
Query: 706 KVVV---ETSSIAIEYGDVKVDENMTVNADLHLDSKAMHLYVMTERRVSKVKVQECKVYK 762
KVV + S A +++ + LD++ LYV ++ VS+V + C+VY
Sbjct: 394 KVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVPLDLCEVYG 453
Query: 763 TCCLG 767
C G
Sbjct: 454 GGCHG 458
>pdb|4GZ8|A Chain A, Mouse Semaphorin 3a, Domains Sema-Psi-Ig
pdb|4GZ8|B Chain B, Mouse Semaphorin 3a, Domains Sema-Psi-Ig
Length = 667
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 690 GDYTVVFIGTDTGHLKKVVVETSSIAIEYGDVKVDENMTVNAD------LHLDSKAMHLY 743
G Y V+FIGTD G + KVV + +V ++E MTV + + L +K LY
Sbjct: 427 GQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEE-MTVFREPTTISAMELSTKQQQLY 485
Query: 744 VMTERRVSKVKVQECKVY----KTCCLGFQPTIAACVASNSKKAVNVKVHIVGQFI 795
+ + V+++ + C +Y CCL P A +S S+ K Q I
Sbjct: 486 IGSTAGVAQLPLHRCDIYGKACAECCLARDPYCAWDGSSCSRYFPTAKARTRAQDI 541
>pdb|4GZA|G Chain G, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
Length = 538
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 690 GDYTVVFIGTDTGHLKKVVVETSSIAIEYGDVKVDENMTVNAD------LHLDSKAMHLY 743
G Y V+FIGTD G + KVV + +V ++E MTV + + L +K LY
Sbjct: 427 GQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEE-MTVFREPTTISAMELSTKQQQLY 485
Query: 744 VMTERRVSKVKVQECKVY----KTCCLGFQPTIAACVASNSK 781
+ + V+++ + C +Y CCL P A +S S+
Sbjct: 486 IGSTAGVAQLPLHRCDIYGKACAECCLARDPYCAWDGSSCSR 527
>pdb|3NVN|B Chain B, Molecular Mechanism Of Guidance Cue Recognition
pdb|3NVQ|B Chain B, Molecular Mechanism Of Guidance Cue Recognition
pdb|3NVQ|F Chain F, Molecular Mechanism Of Guidance Cue Recognition
Length = 476
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 1091 TCWDCLNRKDPYCGWCSLDNKCSLRSDCQDAAKDPLSWISYKSG 1134
+C +CL DP+CGWC +C+ + DC +++ +W+ SG
Sbjct: 426 SCSECLTATDPHCGWCHSLQRCTFQGDCVH-SENLENWLDISSG 468
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 44/197 (22%)
Query: 579 DVLFAVFAESEAPDGEGSNR-PKNSSALCIYPLASIRRKFMQNIKTCFSGQGNRGLDFIS 637
DV VF+ A GEG R ++ALC++ ++ I
Sbjct: 270 DVWAGVFS---AAAGEGQERRSPTTTALCLFRMSEI------------------------ 302
Query: 638 PAHPCVQTKLQTIGEDFCGLDVNTPLGGE----NPIEAVAVLNFSVRCTAVAATSTGDYT 693
Q + + + DF + + G + PI + +++ + T+V T + T
Sbjct: 303 ------QARAKRVSWDFKTAESHCKEGDQPERVQPIASSTLIHSDL--TSVYGTVVMNRT 354
Query: 694 VVFIGTDTGHLKKVVV-ETSSIAIEYGDVKVDENMTVNADLHLDS-KAMHLYVMTERRVS 751
V+F+GT G L KV++ E + ++ E V L D K +++Y+ + V
Sbjct: 355 VLFLGTGDGQLLKVILGENLTSNCPEVIYEIKEETPVFYKLVPDPVKNIYIYLTAGKEVR 414
Query: 752 KVKVQECKVYKTC--CL 766
+++V C +K+C CL
Sbjct: 415 RIRVANCNKHKSCSECL 431
>pdb|1Q47|A Chain A, Structure Of The Semaphorin 3a Receptor-Binding Module
pdb|1Q47|B Chain B, Structure Of The Semaphorin 3a Receptor-Binding Module
Length = 495
Score = 37.7 bits (86), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 690 GDYTVVFIGTDTGHLKKVVVETSSIAIEYGDVKVDENMTVNAD------LHLDSKAMHLY 743
G Y V+FIGTD G + KVV + +V ++E MTV + + L +K LY
Sbjct: 419 GQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEE-MTVFREPTTISAMELSTKQQQLY 477
Query: 744 VMTERRVSKVKVQECKVY 761
+ + V+++ + C +Y
Sbjct: 478 IGSTAGVAQLPLHRCDIY 495
>pdb|1UAD|C Chain C, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain
Complex
pdb|1UAD|D Chain D, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain
Complex
Length = 99
Score = 36.2 bits (82), Expect = 0.20, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 916 PEITSFQPKSG-PWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVC 974
P +T P G PW T VTI G NLG D+ G+++ G C + + ++IVC
Sbjct: 8 PLVTGISPNEGIPW---TKVTIRGENLGTGPTDLI-GLTICGHNCL-LTAEWMSASKIVC 62
Query: 975 QVDGPGTRGSREGPVIVKIED-FRGQSKDNYQFVDP 1009
+V G + +G +IV + RG S +++ + P
Sbjct: 63 RV---GQAKNDKGDIIVTTKSGGRGTSTVSFKLLKP 95
>pdb|1HK6|A Chain A, Ral Binding Domain From Sec5
Length = 95
Score = 35.0 bits (79), Expect = 0.50, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 911 HTCPNPEITSFQPKSG-PWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRT 969
H P +T P G PW T VTI G NLG D+ G+++ G C + +
Sbjct: 1 HMRQPPLVTGISPNEGIPW---TKVTIRGENLGTGPTDLI-GLTICGHNCL-LTAEWMSA 55
Query: 970 TQIVCQVDGPGTRGSREGPVIVKIED-FRGQSKDNYQFVDP 1009
++IVC+V G + +G +IV + +G S +++ + P
Sbjct: 56 SKIVCRV---GQAKNDKGDIIVTTKSGGKGTSTVSFKLLKP 93
>pdb|1SSL|A Chain A, Solution Structure Of The Psi Domain From The Met Receptor
Length = 48
Score = 31.2 bits (69), Expect = 7.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 865 CRDLANNCGLCLALPEKYGCGWCQSSKRCEIFEQCDKGLGTW 906
CR +C CL+ P CGWC +C E+C GTW
Sbjct: 6 CRHF-QSCSQCLSAPPFVQCGWCHD--KCVRSEECLS--GTW 42
>pdb|2A4V|A Chain A, Crystal Structure Of A Truncated Mutant Of Yeast Nuclear
Thiol Peroxidase
Length = 159
Score = 30.8 bits (68), Expect = 9.8, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Query: 134 NLLYIKDP--HIYVVYKDKKFVNSCEVMSNNYMI-------CTAPTITGALDKIDEEHPE 184
N L I DP + ++ +D ++ ++ NN ++ + P T + + E
Sbjct: 5 NELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQE 64
Query: 185 QLEY----GFEMDNVTSVRNLSSKLNSPYFLFPNPIYE 218
EY G D+VTS + SK N PY L +P E
Sbjct: 65 LKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKRE 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,671,107
Number of Sequences: 62578
Number of extensions: 3067255
Number of successful extensions: 6610
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 6504
Number of HSP's gapped (non-prelim): 65
length of query: 2400
length of database: 14,973,337
effective HSP length: 115
effective length of query: 2285
effective length of database: 7,776,867
effective search space: 17770141095
effective search space used: 17770141095
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)