Query psy15505
Match_columns 2400
No_of_seqs 632 out of 1577
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 22:59:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15505.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15505hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3610|consensus 100.0 5E-204 1E-208 1964.4 55.4 989 860-2208 1-1025(1025)
2 PF08337 Plexin_cytopl: Plexin 100.0 6E-188 1E-192 1737.7 21.1 500 1678-2186 1-539 (539)
3 KOG3611|consensus 100.0 2E-47 4.2E-52 496.6 30.4 361 371-778 111-523 (737)
4 smart00630 Sema semaphorin dom 100.0 2.6E-43 5.7E-48 439.2 28.9 293 371-729 56-389 (390)
5 PF01403 Sema: Sema domain; I 100.0 1.5E-40 3.2E-45 422.7 27.9 330 371-738 56-432 (433)
6 KOG3610|consensus 100.0 5.3E-39 1.2E-43 421.2 23.4 339 8-380 138-480 (1025)
7 cd01179 IPT_plexin_repeat2 Sec 99.5 5.3E-14 1.1E-18 141.2 11.0 85 13-98 1-85 (85)
8 cd01180 IPT_plexin_repeat1 Fir 99.5 1.4E-13 3.1E-18 140.7 9.9 86 13-98 1-94 (94)
9 cd01181 IPT_plexin_repeat3 Thi 99.4 2.9E-13 6.2E-18 139.6 9.6 99 100-213 1-99 (99)
10 cd01180 IPT_plexin_repeat1 Fir 99.4 4.4E-13 9.6E-18 137.1 10.4 92 916-1008 1-94 (94)
11 cd01179 IPT_plexin_repeat2 Sec 99.4 5.7E-13 1.2E-17 133.8 11.0 74 1009-1087 1-74 (85)
12 cd00603 IPT_PCSR IPT domain of 99.2 3.3E-11 7.2E-16 121.9 10.8 86 13-98 1-90 (90)
13 cd01181 IPT_plexin_repeat3 Thi 99.2 6E-11 1.3E-15 122.6 9.0 83 13-97 1-98 (99)
14 cd00603 IPT_PCSR IPT domain of 99.2 1.4E-10 3E-15 117.3 10.7 74 1009-1087 1-75 (90)
15 cd00102 IPT Immunoglobulin-lik 99.2 2.1E-10 4.5E-15 115.1 11.3 86 13-98 1-89 (89)
16 smart00429 IPT ig-like, plexin 99.1 3.8E-10 8.3E-15 114.1 9.0 85 13-97 2-90 (90)
17 cd00102 IPT Immunoglobulin-lik 99.0 1.1E-09 2.3E-14 110.0 11.2 74 1009-1087 1-75 (89)
18 smart00429 IPT ig-like, plexin 99.0 1.7E-09 3.8E-14 109.3 9.0 78 1008-1090 1-82 (90)
19 PF01833 TIG: IPT/TIG domain; 98.9 4.9E-09 1.1E-13 103.9 10.3 83 13-96 1-85 (85)
20 PF01833 TIG: IPT/TIG domain; 98.9 1.4E-08 3.1E-13 100.6 11.8 76 1009-1090 1-78 (85)
21 cd01175 IPT_COE IPT domain of 98.7 3.6E-08 7.8E-13 96.3 9.0 72 1009-1087 1-72 (85)
22 cd01175 IPT_COE IPT domain of 98.6 1.6E-07 3.6E-12 91.8 9.0 83 13-97 1-84 (85)
23 cd02849 CGTase_C_term Cgtase ( 98.1 1.5E-05 3.2E-10 80.0 10.3 64 1008-1075 2-65 (81)
24 cd02849 CGTase_C_term Cgtase ( 98.1 1.1E-05 2.4E-10 80.9 9.2 69 12-84 2-70 (81)
25 cd00604 IPT_CGTD IPT domain (d 98.0 2.6E-05 5.7E-10 78.2 9.7 63 1009-1075 1-63 (81)
26 cd00604 IPT_CGTD IPT domain (d 98.0 4E-05 8.6E-10 76.9 9.8 78 13-96 1-79 (81)
27 TIGR03437 Soli_cterm Solibacte 96.9 0.044 9.5E-07 64.8 18.3 146 928-1088 2-207 (215)
28 cd05136 RasGAP_DAB2IP The DAB2 96.3 0.016 3.4E-07 72.2 10.0 293 1719-2208 5-307 (309)
29 cd05392 RasGAP_Neurofibromin_l 95.6 0.12 2.6E-06 65.1 13.6 183 2010-2212 128-320 (323)
30 PF01437 PSI: Plexin repeat; 95.0 0.011 2.4E-07 54.4 1.5 49 864-914 1-51 (51)
31 PF01437 PSI: Plexin repeat; 94.7 0.0049 1.1E-07 56.7 -1.5 32 1089-1120 5-37 (51)
32 cd05128 RasGAP_GAP1_like The G 94.4 0.069 1.5E-06 66.8 6.8 136 2008-2147 132-272 (315)
33 cd01176 IPT_RBP-Jkappa IPT dom 94.0 0.29 6.2E-06 49.8 8.8 84 11-98 4-97 (97)
34 cd01176 IPT_RBP-Jkappa IPT dom 93.1 0.55 1.2E-05 47.9 9.0 74 1009-1090 6-89 (97)
35 smart00423 PSI domain found in 90.9 0.15 3.3E-06 46.0 2.2 37 870-907 5-41 (46)
36 smart00423 PSI domain found in 90.7 0.11 2.4E-06 46.8 1.2 29 1090-1118 5-33 (46)
37 cd01178 IPT_NFAT IPT domain of 90.2 1.4 3E-05 46.5 8.7 85 916-1007 2-100 (101)
38 TIGR03437 Soli_cterm Solibacte 89.5 3.1 6.7E-05 49.7 12.0 63 24-86 1-76 (215)
39 smart00323 RasGAP GTPase-activ 88.5 0.33 7.1E-06 61.7 3.4 166 2009-2191 151-318 (344)
40 cd00602 IPT_TF IPT domain of e 88.4 2.1 4.5E-05 45.4 8.6 86 916-1007 1-100 (101)
41 cd00602 IPT_TF IPT domain of e 88.3 1.9 4.1E-05 45.7 8.2 84 13-98 1-101 (101)
42 cd01178 IPT_NFAT IPT domain of 84.6 4.9 0.00011 42.6 8.8 83 13-98 2-101 (101)
43 PRK00182 tatB sec-independent 77.7 4.5 9.8E-05 46.0 6.1 76 1617-1698 11-90 (160)
44 PF04478 Mid2: Mid2 like cell 75.5 2.1 4.5E-05 48.0 2.8 29 1605-1633 49-78 (154)
45 KOG0520|consensus 74.8 7 0.00015 54.8 7.9 73 10-83 402-475 (975)
46 cd05137 RasGAP_CLA2_BUD2 CLA2/ 74.1 1.4 3E-05 57.0 1.2 153 2008-2170 199-366 (395)
47 cd05130 RasGAP_Neurofibromin N 74.0 2.2 4.7E-05 54.1 2.8 169 2008-2193 135-305 (329)
48 PF02009 Rifin_STEVOR: Rifin/s 73.6 0.99 2.1E-05 56.2 -0.3 19 1625-1643 278-297 (299)
49 KOG0520|consensus 72.2 6.9 0.00015 54.9 6.9 73 1001-1084 402-475 (975)
50 PF09099 Qn_am_d_aIII: Quinohe 72.1 14 0.00031 37.8 7.4 64 1008-1075 1-68 (81)
51 PF08693 SKG6: Transmembrane a 72.1 3.3 7.3E-05 36.7 2.6 26 1606-1631 13-39 (40)
52 PF15102 TMEM154: TMEM154 prot 71.8 2.5 5.5E-05 47.1 2.3 28 1606-1633 59-87 (146)
53 cd01177 IPT_NFkappaB IPT domai 70.1 25 0.00055 37.4 8.9 86 917-1007 2-101 (102)
54 cd05134 RasGAP_RASA3 RASA3 (or 69.0 9.8 0.00021 47.9 6.8 94 2008-2105 131-227 (310)
55 PRK03100 sec-independent trans 68.8 11 0.00024 42.0 6.3 76 1617-1698 11-90 (136)
56 TIGR01477 RIFIN variant surfac 68.8 1.6 3.6E-05 54.8 0.1 31 1605-1635 311-342 (353)
57 cd05135 RasGAP_RASAL Ras GTPas 68.6 9.4 0.0002 48.6 6.6 129 2008-2144 149-285 (333)
58 PF09099 Qn_am_d_aIII: Quinohe 68.1 12 0.00027 38.2 6.1 69 13-85 2-72 (81)
59 PTZ00046 rifin; Provisional 67.8 1.8 3.8E-05 54.7 0.1 30 1606-1635 317-347 (358)
60 cd01177 IPT_NFkappaB IPT domai 67.6 34 0.00074 36.5 9.2 85 13-98 1-102 (102)
61 cd05391 RasGAP_p120GAP p120GAP 67.3 7 0.00015 49.4 5.1 181 2010-2213 128-314 (315)
62 PRK01371 sec-independent trans 65.8 15 0.00032 41.1 6.6 69 1616-1698 9-81 (137)
63 cd05132 RasGAP_GAPA GAPA is an 65.5 3.7 8.1E-05 52.2 2.3 142 1993-2147 112-259 (331)
64 cd04519 RasGAP RasGAP: Ras-GTP 63.0 4.2 9.1E-05 50.6 2.1 132 2009-2147 129-262 (318)
65 cd05395 RasGAP_RASA4 Ras GTPas 61.0 3 6.5E-05 52.9 0.3 133 2008-2148 148-288 (337)
66 PF06305 DUF1049: Protein of u 60.7 3.7 8.1E-05 39.9 0.9 18 1637-1654 48-65 (68)
67 PRK11677 hypothetical protein; 60.2 14 0.00031 41.2 5.2 38 1631-1669 30-67 (134)
68 cd05394 RasGAP_RASA2 RASA2 (or 59.9 4.9 0.00011 50.5 1.8 93 2008-2104 131-226 (313)
69 cd05395 RasGAP_RASA4 Ras GTPas 59.7 16 0.00035 46.6 6.3 87 1732-1821 23-111 (337)
70 cd05131 RasGAP_IQGAP2 IQGAP2 i 57.7 9.5 0.00021 48.8 3.9 140 1994-2147 114-264 (339)
71 PF08374 Protocadherin: Protoc 57.2 5.1 0.00011 47.3 1.3 24 1605-1628 38-61 (221)
72 PF13043 DUF3903: Domain of un 57.2 6.3 0.00014 33.9 1.4 20 1651-1670 11-33 (40)
73 COG3167 PilO Tfp pilus assembl 56.5 7.1 0.00015 45.1 2.2 39 1639-1679 75-113 (211)
74 cd05127 RasGAP_IQGAP_related T 54.4 7.2 0.00016 49.5 2.1 142 1994-2148 112-259 (325)
75 KOG2059|consensus 52.0 7.1 0.00015 52.5 1.5 89 2005-2098 411-503 (800)
76 PF06103 DUF948: Bacterial pro 50.6 12 0.00025 38.7 2.6 40 1636-1676 25-64 (90)
77 cd05394 RasGAP_RASA2 RASA2 (or 49.9 30 0.00064 43.8 6.3 75 1746-1821 32-108 (313)
78 PF01299 Lamp: Lysosome-associ 48.8 25 0.00054 44.3 5.6 29 1606-1634 271-301 (306)
79 PF06667 PspB: Phage shock pro 48.8 12 0.00027 37.7 2.2 20 1635-1654 40-59 (75)
80 KOG2297|consensus 48.3 45 0.00097 41.6 7.1 119 1653-1771 31-176 (412)
81 KOG2347|consensus 47.7 11 0.00025 51.8 2.4 84 915-1005 12-96 (934)
82 PF07204 Orthoreo_P10: Orthore 47.6 15 0.00032 38.3 2.6 31 1613-1643 49-81 (98)
83 cd05135 RasGAP_RASAL Ras GTPas 47.6 6.9 0.00015 49.8 0.4 80 1731-1813 23-104 (333)
84 PF10805 DUF2730: Protein of u 46.6 17 0.00036 39.0 3.0 40 1637-1676 35-82 (106)
85 PF02439 Adeno_E3_CR2: Adenovi 41.3 7 0.00015 34.3 -0.6 11 1607-1617 9-19 (38)
86 PF01102 Glycophorin_A: Glycop 40.9 8.9 0.00019 42.1 -0.1 9 1605-1613 64-72 (122)
87 KOG0010|consensus 40.8 18 0.00038 47.5 2.5 51 1862-1938 40-90 (493)
88 cd05137 RasGAP_CLA2_BUD2 CLA2/ 40.5 74 0.0016 41.7 8.0 97 1718-1820 55-169 (395)
89 TIGR02209 ftsL_broad cell divi 40.3 30 0.00066 35.1 3.7 36 1630-1673 24-59 (85)
90 cd05391 RasGAP_p120GAP p120GAP 40.1 52 0.0011 41.8 6.4 96 1720-1821 6-103 (315)
91 TIGR02976 phageshock_pspB phag 40.0 28 0.00061 35.2 3.2 18 1637-1654 42-59 (75)
92 KOG4403|consensus 39.6 32 0.0007 44.1 4.3 123 1625-1778 231-355 (575)
93 PF06295 DUF1043: Protein of u 39.0 53 0.0011 36.5 5.5 37 1633-1670 28-64 (128)
94 cd05130 RasGAP_Neurofibromin N 38.7 87 0.0019 40.2 8.1 86 1731-1819 19-106 (329)
95 cd05134 RasGAP_RASA3 RASA3 (or 38.7 11 0.00025 47.4 0.4 77 1733-1814 23-101 (310)
96 PTZ00382 Variant-specific surf 38.4 21 0.00047 37.6 2.3 16 1605-1620 66-81 (96)
97 PF01034 Syndecan: Syndecan do 38.0 10 0.00022 37.0 -0.1 24 1606-1631 14-37 (64)
98 PF04478 Mid2: Mid2 like cell 38.0 28 0.0006 39.5 3.1 28 323-350 50-78 (154)
99 PF06305 DUF1049: Protein of u 37.6 39 0.00085 32.9 3.8 39 1611-1649 29-67 (68)
100 cd05133 RasGAP_IQGAP1 IQGAP1 i 37.1 32 0.00069 44.4 4.0 149 1993-2154 113-272 (360)
101 KOG1159|consensus 36.0 56 0.0012 43.1 5.7 168 2031-2205 167-360 (574)
102 KOG3848|consensus 34.9 14 0.00031 46.9 0.4 27 868-894 321-347 (516)
103 PF05454 DAG1: Dystroglycan (D 34.8 13 0.00028 46.4 0.0 21 1614-1634 156-176 (290)
104 PF13908 Shisa: Wnt and FGF in 34.6 23 0.0005 41.2 2.0 14 1522-1535 43-56 (179)
105 PF14575 EphA2_TM: Ephrin type 34.5 13 0.00029 37.4 0.0 12 1711-1722 60-71 (75)
106 PF02899 Phage_int_SAM_1: Phag 34.4 30 0.00065 34.3 2.5 65 2115-2181 15-82 (84)
107 PF14584 DUF4446: Protein of u 34.3 20 0.00043 40.9 1.3 59 1629-1687 22-90 (151)
108 COG3105 Uncharacterized protei 33.4 73 0.0016 35.2 5.2 28 1632-1663 36-63 (138)
109 PF05568 ASFV_J13L: African sw 32.6 11 0.00025 41.5 -0.8 41 1607-1648 31-72 (189)
110 PF00616 RasGAP: GTPase-activa 29.6 55 0.0012 38.1 4.1 91 2008-2101 100-193 (197)
111 PF04999 FtsL: Cell division p 29.3 55 0.0012 34.2 3.6 36 1629-1672 34-69 (97)
112 PF12877 DUF3827: Domain of un 29.1 33 0.00071 46.4 2.3 27 1605-1631 270-296 (684)
113 KOG3836|consensus 28.9 1.1E+02 0.0024 41.5 6.8 101 917-1037 244-351 (605)
114 PHA03049 IMV membrane protein; 28.8 12 0.00026 36.5 -1.3 46 1614-1659 9-55 (68)
115 PTZ00370 STEVOR; Provisional 27.2 14 0.00031 45.5 -1.4 10 1625-1634 276-285 (296)
116 PF09190 DALR_2: DALR domain; 26.8 1.4E+02 0.003 29.0 5.5 46 2163-2212 7-52 (63)
117 PF07047 OPA3: Optic atrophy 3 25.3 75 0.0016 35.6 3.9 29 1626-1654 94-122 (134)
118 PF02009 Rifin_STEVOR: Rifin/s 24.9 23 0.00051 44.5 -0.1 15 339-353 275-289 (299)
119 smart00323 RasGAP GTPase-activ 24.1 1.8E+02 0.0039 37.4 7.5 86 1731-1819 39-126 (344)
120 PF08114 PMP1_2: ATPase proteo 24.1 54 0.0012 29.4 1.9 20 1620-1640 22-41 (43)
121 PF00558 Vpu: Vpu protein; In 24.0 32 0.0007 35.3 0.7 13 1644-1656 37-49 (81)
122 KOG1025|consensus 23.5 41 0.00089 46.8 1.6 23 2086-2108 993-1015(1177)
123 PF14991 MLANA: Protein melan- 23.3 25 0.00054 37.9 -0.3 32 1608-1644 27-58 (118)
124 PRK04778 septation ring format 23.3 48 0.001 45.5 2.3 84 2129-2213 453-547 (569)
125 PF00960 Neocarzinostat: Neoca 23.1 3.2E+02 0.0069 29.9 7.7 43 17-66 3-45 (110)
126 PF07204 Orthoreo_P10: Orthore 22.8 51 0.0011 34.5 1.8 7 1634-1640 76-82 (98)
127 PRK01919 tatB sec-independent 22.4 1.5E+02 0.0032 34.6 5.4 35 1642-1676 62-96 (169)
128 PF05961 Chordopox_A13L: Chord 22.1 20 0.00042 35.3 -1.2 46 1614-1659 9-55 (68)
129 PRK00708 sec-independent trans 22.1 1.1E+02 0.0025 36.6 4.7 20 1656-1675 77-96 (209)
130 KOG3611|consensus 22.0 40 0.00086 47.3 1.1 37 1081-1118 489-526 (737)
131 PF06103 DUF948: Bacterial pro 21.8 56 0.0012 33.7 2.0 45 1628-1673 24-68 (90)
132 PRK04654 sec-independent trans 21.8 1.2E+02 0.0026 36.3 4.8 10 1608-1617 2-11 (214)
133 PF06116 RinB: Transcriptional 21.7 33 0.00071 32.2 0.2 49 1792-1844 2-50 (53)
134 PF01956 DUF106: Integral memb 21.7 41 0.00089 38.7 1.0 43 1633-1675 43-85 (168)
135 cd04519 RasGAP RasGAP: Ras-GTP 20.9 2.8E+02 0.0062 34.5 8.3 66 1750-1816 34-101 (318)
136 PF12273 RCR: Chitin synthesis 20.7 40 0.00087 37.3 0.7 16 1608-1623 5-20 (130)
137 PF15102 TMEM154: TMEM154 prot 20.7 59 0.0013 36.8 1.9 16 334-349 71-86 (146)
138 PF00960 Neocarzinostat: Neoca 20.1 4.3E+02 0.0094 28.9 7.9 43 1013-1062 3-45 (110)
No 1
>KOG3610|consensus
Probab=100.00 E-value=4.6e-204 Score=1964.36 Aligned_cols=989 Identities=44% Similarity=0.688 Sum_probs=908.3
Q ss_pred EEEeecccCCCCccccccCCCcccceecCCCCCccccccCCCCCCCcccCCCCCCCCeEEEEecCcccCCCCcEEEEEee
Q psy15505 860 VNIYRCRDLANNCGLCLALPEKYGCGWCQSSKRCEIFEQCDKGLGTWLNRNHTCPNPEITSFQPKSGPWEGGTNVTINGI 939 (2400)
Q Consensus 860 VtLYnCs~~~~dCs~Cl~ad~~y~C~WC~~~~~C~~~~~C~~~~~~w~~~~~~CP~P~ItsI~P~sGp~~GGT~VTI~Gs 939 (2400)
|.||+|..++.+|++|+++++++.|+||..++ ..++.|. |.+.+..||.|.|+.++|..||++|||.+||.|.
T Consensus 1 v~ly~c~~~~~~c~~cl~~~p~~~C~wc~~~~--~~~~~C~-----~~~v~~~c~~P~i~~~~P~~g~~eggt~iti~g~ 73 (1025)
T KOG3610|consen 1 VELYSCLRLAKDCALCLPASPVLLCGWCIRGS--KEAHACS-----EMNVNCVCPLPSITALSPLNGPIEGGTNISIVGT 73 (1025)
T ss_pred CeeeeccccccchhhhhccCccceeEEEeCCc--hhhhhcc-----cccCceecCCCcccceeeccccccCCceeeeeee
Confidence 47999999999999999999999999996665 7778895 5667779999999999999999999999999999
Q ss_pred cCCCccCCccceEEEeCeeeecccceeecccEEEEEeCCCCCCCCccccEEEEEc---ccccccccceEEeCcEEEEEec
Q psy15505 940 NLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVCQVDGPGTRGSREGPVIVKIE---DFRGQSKDNYQFVDPVIKSIQP 1016 (2400)
Q Consensus 940 Nfg~~~~di~~~V~Vgg~~C~v~~~~y~~st~IvC~tpps~~~~~~~G~V~V~V~---~~~~~S~~~FtY~~P~ItsIsP 1016 (2400)
|||...+|+...+.|++.+|.+.++.|..+..|+|.+.++. . ..|+|.|+|. .+.+.++..|+|+.|.+.++.|
T Consensus 74 nlg~~~~dv~~~v~Va~v~c~~~~~~y~~~~~i~C~~~~~~--~-~~g~v~~~v~~~~~~~~~ss~~~s~~~~~~~~~~P 150 (1025)
T KOG3610|consen 74 NLGNSLNDVSDGVKVAGVRCSPVAEEYDCSPCIACSPGANG--S-WPGPINVAVGVTPYGPALSSCGSSLQGPCFLSAEP 150 (1025)
T ss_pred ehhhhhhhccCCceEeeeecCCCccccccccceeeccCCCC--C-CCCceeEEeccccccccccccceeecceeEEeecc
Confidence 99999999988999999999999999999999999988875 2 6789999987 3457889999999999999999
Q ss_pred CceecCCCcEEEEEeecCCCCCcEEEEECCc-eeEEEEecCce-EEEEcCCCCCCceeEeEeeeeEEEECCceeeeeccc
Q psy15505 1017 LQGPRSGGTILHISGSHMNAGSRIEAFIDDL-PCRITSVEPEM-AHCVTSASDRQRNGKLSESNTQHSFTELVQTLTCWD 1094 (2400)
Q Consensus 1017 ~~GP~sGGT~VTItGs~L~~gs~v~V~IG~~-~C~i~s~s~t~-I~C~Tp~~~~~~~v~V~~~~v~V~~d~~~~~~~C~~ 1094 (2400)
.+||.+|||.++|+|++|++|+.+.|.+|+. +|.+..+.+.. |.|+|++.......++. |.||+..+...
T Consensus 151 ~~Gp~~ggt~v~~~Gs~l~~gs~~~~vv~~~~~c~~~~~~~~~~~~c~t~~~~~~~~~~~~-----v~f~~~~~~~~--- 222 (1025)
T KOG3610|consen 151 VNGPASGGTQVHCTGSPLDTGSCPDCVVSGLGPCVISVVQDSAVIFCVTSSQGAGSEAPVL-----VSFDRTPQKLT--- 222 (1025)
T ss_pred CcCCCCCCcceEEeccccccCCCceEEecCCccceeEeecCceEEEEecCCCCCCCccceE-----EEecccccccC---
Confidence 9999999999999999999999999999999 99999987776 99999999887888888 99999887664
Q ss_pred cCCCCCCCcCccCCCCcCCCCCCCceeecCCcccccccCCccceEEEEecCccccCCCcEEEEccccCCCCCCcccccee
Q psy15505 1095 CLNRKDPYCGWCSLDNKCSLRSDCQDAAKDPLSWISYKSGRCTTITSVTPNQLQRTTARTLDLAIENLPKLPGQFLCAFT 1174 (2400)
Q Consensus 1095 c~~~~dpycgwC~l~~rCs~~~~cF~Y~~~P~~w~s~~~~~c~~ItsI~P~~g~~sGGt~Iti~~~~~p~l~~~~~C~f~ 1174 (2400)
... |.|+.|| ++.+|.|..++.+||+.|+
T Consensus 223 --~~~-------------------f~y~~dp------------s~~~i~P~~si~~gg~~i~------------------ 251 (1025)
T KOG3610|consen 223 --PLA-------------------FNYTADP------------SYSSVLPATSIKYGGRFIT------------------ 251 (1025)
T ss_pred --CCC-------------------cccccCC------------cceeccceeeEeeCCEEEE------------------
Confidence 455 9999999 9999999999999999999
Q ss_pred cccccceeceEEecCCceeeCCCCCCCCceeeeccceeeEEeeccCCCCCcccceeeeccCCCCcceEEecCCCCCcccc
Q psy15505 1175 IAEKTLTTEAVKKTNGVGCITPRTDFLPSIPVGQHNITAKLSVRSSNGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCDCI 1254 (2400)
Q Consensus 1175 ~~~~~~~~~~V~Gsnf~~~q~P~~~~~P~~~v~~d~v~v~l~~~~~~~~~~~~~~~~~~~c~~~~~C~~~~~t~~pc~~~ 1254 (2400)
|.|++|+.||+ |++.+ +. .+..+ .+.|.+++++
T Consensus 252 ----------v~G~~f~tVQ~------~~i~~-------~~-----~~~~~------------~~~c~i~~~t------- 284 (1025)
T KOG3610|consen 252 ----------VNGTYFLTVQR------PRLDV-------QT-----SGLRR------------IRACSINNGT------- 284 (1025)
T ss_pred ----------EeeeeeeeccC------ceEEe-------ec-----cceee------------cccccccccc-------
Confidence 99999999999 88877 33 12111 2679999988
Q ss_pred cccccCCcEEEecCCcccCCCCCCCCCCCCCCCCCCCcccccchhhhhhccccccccccccccccCCCceeeeeeecCcc
Q psy15505 1255 KCCQLLGDVIYCDPMEFTLTPRDYPISTPRLPMSGFSHNCGLCLRAREKLDAAGVSSKYSATARSLDPRVVTILHISGSH 1334 (2400)
Q Consensus 1255 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1334 (2400)
.|.|. +|.++.+. . ++.+.
T Consensus 285 --------~~~c~--------------~P~~~~~~------~-~~~~~-------------------------------- 303 (1025)
T KOG3610|consen 285 --------YMECQ--------------TPLIFIPK------R-RRGTI-------------------------------- 303 (1025)
T ss_pred --------ceeee--------------cccccCCc------c-ccccc--------------------------------
Confidence 99999 98887553 1 11110
Q ss_pred cccceeeeeEEEecCCccccccccccccCCCcccccccccccccccccccccccccCccccccccccccCCccccccCCC
Q psy15505 1335 MNAAVSLLKHFMMDPPMSAVTSVSREMAPWRKPLRQKTAGMAKLQYEASVDCWHRIPEQGMQYPRMRSRHGWHTYQCGGK 1414 (2400)
Q Consensus 1335 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 1414 (2400)
. ...+++|++|+.
T Consensus 304 --~-~~~~~~fl~d~~---------------------------------------------------------------- 316 (1025)
T KOG3610|consen 304 --E-RKVEYTFLQDAQ---------------------------------------------------------------- 316 (1025)
T ss_pred --c-cceeeeEEeech----------------------------------------------------------------
Confidence 1 445667777751
Q ss_pred CCCccccCCCCceeeccCcccccccccccccccccccceeeecccCCccEEEecCcCCCCcceeccccccc-eeccCCce
Q psy15505 1415 NPPVYIKDPPHFHVVYQDKKFCQLCEVNEVTYSYDLYRTTITGALDKMMKYRASSHLAGSYGFEMDNVTKE-IKYYKSDY 1493 (2400)
Q Consensus 1415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Y~p~~~~~~dp~f~~~~~~~~-~~~~~g~~ 1493 (2400)
.....+|.|+| ||.|++ |.++ ....+++.
T Consensus 317 ------------------------------------------~~~~~~f~~~~------dp~f~~--f~~~~~~~~p~~~ 346 (1025)
T KOG3610|consen 317 ------------------------------------------LARQIGFSYYP------DPLFGV--FAQSKDSHKPGER 346 (1025)
T ss_pred ------------------------------------------hhcccCceecC------CceEEe--ecccccccCCCCe
Confidence 01223699999 999999 8754 56788899
Q ss_pred EEEeeeccCcccccceeeEEEeceeeeEEEecCceEEEeCCCCCCCCCCCCCCccCCCCcEEEEEcCceEEEeeeEEecC
Q psy15505 1494 LTINGQHLDRASQESDVIVKIGTGFCNVTSVSRLQLTCRPPAEQPPNKNDDDESTAELPDVTVIVGNNLKFYIGKLSYSP 1573 (2400)
Q Consensus 1494 LtI~G~nL~~a~~~~dv~V~IG~~~C~V~~ls~~~L~C~pP~~qp~~~~~~~~~~~~~~~v~V~vG~~l~~~~G~v~y~~ 1573 (2400)
++++|.||+++.++.|+.|+||+++|.++.++++|++|++|..+|.+ +.++|++| +++|.+|.++|++
T Consensus 347 ~~~~g~nl~l~~~~~~~~v~ig~~~C~~t~l~~~~l~c~~p~~~p~~-----------~~~~v~~g-~~~~~~g~l~~~s 414 (1025)
T KOG3610|consen 347 SVVCGFNINLADPFFDFIVEIGNVRCLVTFLTRNQLHCQPPSLTPNS-----------PGLEARMG-NLEYKLGLLVYSS 414 (1025)
T ss_pred eeeeccccccCCCCcceEEEEcCcccceeecccCceeecChhhCCCC-----------CCeEEEcC-ceEEecCcEEEec
Confidence 99999999999999999999999999999999999999999999765 33999999 9999999999987
Q ss_pred CCCCCCCcceeeeecccccCCCcccCCCcccceEEeehhhHHHHHHHHHhhheeeeccchHhHHHHHHHHHHHHHHHHHH
Q psy15505 1574 PAALNSPLTKTAIVGKLSYSPPAALNSPLTKTAMYGGIAIITILFLIFIAFLIAYRRKSTENTRVLKNMQEQMDILELRV 1653 (2400)
Q Consensus 1574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~li~~~~~~~yrrks~~~~r~~k~~~~qme~lE~~V 1653 (2400)
...+.+ . +++++++++++++++++|+++.+|+||++|++|+++|+|.|||+||++|
T Consensus 415 ----~~~~~~-------------------~-~~~~~~~~~~~~~~l~~i~~~~~~~~k~~~s~~~~~~~~~qmdnlE~~v 470 (1025)
T KOG3610|consen 415 ----ESLLSL-------------------F-QAVLLISIGLFLLVLLVIAVLLMSKRKSSQSQVELRKPQTQLDNLENDV 470 (1025)
T ss_pred ----ccccch-------------------h-hhHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHHh
Confidence 333322 0 2677888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccccccCCCCCCCccChHhHhhhccCCCCCCCcccccCCchhhhHHHHHHHHHhhccCchhHhHH
Q psy15505 1654 AAECKEAFAELQTEITDLTGDLTSGGIPFLDYRTYAMMILFPNSEHHAVLQFERPELLHKEKGLRLFGQLIQNKTFLLLF 1733 (2400)
Q Consensus 1654 ~~eck~~FaeLqt~m~dl~~dl~~~giPfldy~~y~~~~~Fp~~~~~p~~~~~~~~~~~~~~~l~~f~~ll~~k~Fl~~f 1733 (2400)
++|||||||||||||+|++.++.+.+|||||||+|++|+|||+. +++++.+|++||++|.||.+|
T Consensus 471 ~~ecke~Faelqt~~~d~t~~~~~~~i~fl~yr~~~~R~~fp~~---------------~~~~l~~~~~ll~~k~Fl~t~ 535 (1025)
T KOG3610|consen 471 IKECKEAFAELQTDLNDYTLSLTGGNIPFLPYRGYGCRIFFPGG---------------VEMGLQICGQLLVNKKFLLTS 535 (1025)
T ss_pred hhhhhhhhhhccccCceeEEeeccCCcceEeecCceeeeecCcc---------------ccchhHHHHHHhcccccccce
Confidence 99999999999999999999999999999999999999999997 679999999999999999999
Q ss_pred HHhhccCCCCCcccchhhHHHHHHHHHH-------HHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhH
Q psy15505 1734 IRTLESNRYFSMRDRVNVASLIMVTLQN-------ILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWFTFLLYK 1806 (2400)
Q Consensus 1734 i~tlE~q~~fs~rdr~~~aSLl~v~l~~-------il~~Ll~~li~~~~~~~~~pkl~lRrtEsvvEkmltnW~s~~ly~ 1806 (2400)
|||+|.|++|++|||++||||+|+|||+ +|+.|+.+||++.+++|+|||||||||||||||||+|||++|||.
T Consensus 536 i~t~e~~~sfs~~~r~~vasl~~~aLq~~l~Ylt~~l~~l~~~l~~~~~~~k~~pkl~lrrtesvvekmls~w~~~~l~~ 615 (1025)
T KOG3610|consen 536 WHTDECVPSFSERSRTSVASLLTLALQGSLAYLTPILGVLLGDLIEKVVQSKRNPKLMLRRTESVVEKMLSNWMSFCLYE 615 (1025)
T ss_pred eeeeccccccccccchhhHHHHHHHHHhhcccccccccccHHhHHhhhcccccCcchhhcccchhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCchhHHHHHHHHccccccCcceeecccccccchhhhhcccceeeeEEee-----------------------ec
Q psy15505 1807 FLRECAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLSEEKLIRHAIDFKPMTVY-----------------------VK 1863 (2400)
Q Consensus 1807 ~l~~~ag~pl~~L~~aik~QvekGPvDaitg~ArytL~e~~Llr~~i~~~~l~l~-----------------------vK 1863 (2400)
|||+++|||||+||+|||+|++|||||++||+|||||||++|||+++||+++++. ||
T Consensus 616 ~l~~~~gepl~~L~~~i~~q~~kgpvd~~t~~a~ySl~e~~Llr~s~~~~p~~~~~~l~l~~~~~v~~~v~~cdtI~q~k 695 (1025)
T KOG3610|consen 616 FLRECAGEPLYMLHCAIKQQISKGPVDATTGKARYSLNEPVLLRVSPEYGPLAGGVLLTLGGGQSVPVKVLDCDTISQVK 695 (1025)
T ss_pred HHhhccCccHHHhhhhhhcccCCCccccccccceEeeccCeeeeccccccccccceeeccCCCcceeeeeeccceeeecc
Confidence 9999999999999999999999999999999999999999999999999988755 99
Q ss_pred hhhHHhhhccCCCCCCCCCCCcceEEeeCCCCcEEEecCCCCceeeCceEEEeeccCCCCCCCcEEEEEeeecccccccc
Q psy15505 1864 EKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQYNLSILSE 1943 (2400)
Q Consensus 1864 eKild~~yk~~p~s~rp~~~~~dlew~~~~~~~~~L~d~D~ts~~~~~w~rlNTl~hY~v~d~a~~~l~~~~~~~~~~~~ 1943 (2400)
|||||++|++.|++|||++.+++|||+.|..|+++|+|+|.|++.+++|+||||++||+||||+++.|+|+++.....
T Consensus 696 ~k~l~~~~~~~~~~~~p~~~~~~le~~~g~~~~~~l~d~d~ts~~~~~~~~l~tl~hy~v~~gst~~lvp~~~~~~~~-- 773 (1025)
T KOG3610|consen 696 EKCLLASYSGGPLSQRPPPQTIDLEWRVGLRGGIILQDEDLTSQLSGRWDPLNTLIHYNVPDGSTHILVPLQVSAFSH-- 773 (1025)
T ss_pred cchhhhHhcCCccccCCCCcceEEEEecCCccccccccchhhhhhhccCcccccccccCCCCCceEEEeccchhhhhh--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999653100
Q ss_pred CCCcccccccccccCCCCCCccCCCCCceeEEeecCCCCCccccCcCCcccchhHHhhhhhccccchhhhhHhHHhhhhc
Q psy15505 1944 KTDKYETLNLSKMGRNTSPLNRDHDGMAKEWHLVKHHDSDNQKEGERSNKMVSEIYLTRLLATKGTLQKFVDDLFETIFS 2023 (2400)
Q Consensus 1944 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HLvk~~~~~~~~~~~~~~k~i~EiyltrLls~Kgtlq~fvdd~f~~i~~ 2023 (2400)
....|. ...+++|+..++.++|.|+|||||++++..+ +|+|+||||||||+||||+||||||||++||+
T Consensus 774 ~~~~~~-----s~~~~~~~~~~~~~~~~~~~hlv~~~~~~~~------~k~V~eiyltrlls~kGtlq~~v~~l~~~i~s 842 (1025)
T KOG3610|consen 774 LLSSFD-----SGGSRTPTRCEKNLNGVKLWHLVKPVDEAGQ------KKTVAEIYLTRLLSTKGTLQKFVQDLFQSILS 842 (1025)
T ss_pred hhhhhc-----cccccccccccccCCcceeeecccccccccc------ccchhHHHHhhhhhccccHHHHHHhccccccc
Confidence 000111 1245789999999999999999999998876 59999999999999999999999999999999
Q ss_pred cCcCCCCCCcchhhhhhccHHHHHhcCCCCchhhcccccCCCcceeeeecccCCCeeeeeccCCCCCcceeeehhhhccc
Q psy15505 2024 TAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLIKNPNFVFDIHKSNIVDSCLSVVAQTFMDS 2103 (2400)
Q Consensus 2024 ~~~~~~~~P~aiKy~FDflD~~A~~~~i~d~~~~h~WKtN~lpLRFWvn~ikNp~fvfDi~~s~~vd~~lsviaqtfmda 2103 (2400)
++++ .+|+|||||||||||||++|||+||+++|+||+|+||||||||||||||||||++++..+|+|||||||||||+
T Consensus 843 t~~~--~~P~a~Ky~Fd~ldeqA~~~~i~dp~v~~~wksn~LplR~wvni~knP~~vfd~~~~~~~d~clsviaqt~md~ 920 (1025)
T KOG3610|consen 843 TADS--LVPIAHKYFFDFLDEQAVFHGIEDPDVIHIWKSNSLPLRFWVNIIKNPQFVFDIQKSVGNDACLSVIAQTFMDL 920 (1025)
T ss_pred cccc--cCchHHHHHHHHhhhhhhccCCCCcceeeecccceeeEeeeeeeecChhhhcCccccccchhHHHHHHHHHhhc
Confidence 9984 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccCCCCCCccccccccchhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHhhH
Q psy15505 2104 CSTSDHRLGKDSPSSKLLYAKDIPAYKEWVERYYSDIKSMQAISDQDMNAMLAEESRLHNSEFSTNCALYELYTYASKYN 2183 (2400)
Q Consensus 2104 cs~se~~lgkdspsnklLyakdip~yk~~v~~yy~~I~~~p~~s~qem~~~l~~~s~~~~~~f~~~~al~ely~y~~~y~ 2183 (2400)
||++||+||||||+||||||||||+||.||++||++|++||++++||||++|+++|+.|.++||.+.||+|||+|+.||+
T Consensus 921 cs~~e~~l~~~sp~nkLlyakdi~~y~~~v~~y~~~ir~~~~i~~~~m~~~l~~~s~~h~~~~~~~~al~el~s~~~~y~ 1000 (1025)
T KOG3610|consen 921 CSTSEHKLGKDSPSNKLLYAKDIPEYKAGVVVYYKDIRFTPPISDQEMNSTLALLSRAHATELNKLVALSELYSYLVKYD 1000 (1025)
T ss_pred ccCccccccccCcchhhhHhhhHHHhhhheeehhhhhhhcCccchhhHHHHHHHHhhccCCccchhhhhHHHHHHHhhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcChhhHhhhHHHHHHHH
Q psy15505 2184 EQLTVTLEEDEFSQKQRLAYKLEQK 2208 (2400)
Q Consensus 2184 ~~i~~~L~~d~~~~~~~l~~~l~~v 2208 (2400)
++|+++||+|+.+++++|+.||||+
T Consensus 1001 ~~i~~~l~~d~~~~~~~l~~~le~v 1025 (1025)
T KOG3610|consen 1001 DRILTALEEDEGASKSRLAPKLEQV 1025 (1025)
T ss_pred hhhhhhhhccchhhhhcCcchhcCC
Confidence 9999999999999999999999985
No 2
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=100.00 E-value=6e-188 Score=1737.67 Aligned_cols=500 Identities=66% Similarity=1.052 Sum_probs=398.5
Q ss_pred CCCCccChHhHhhhccC--CCCCCCcccccCCch-hhhHHHHHHHHHhhccCchhHhHHHHhhccCCCCCcccchhhHHH
Q psy15505 1678 GGIPFLDYRTYAMMILF--PNSEHHAVLQFERPE-LLHKEKGLRLFGQLIQNKTFLLLFIRTLESNRYFSMRDRVNVASL 1754 (2400)
Q Consensus 1678 ~giPfldy~~y~~~~~F--p~~~~~p~~~~~~~~-~~~~~~~l~~f~~ll~~k~Fl~~fi~tlE~q~~fs~rdr~~~aSL 1754 (2400)
+||||||||+|++|+|| ||.++||++++++.. +.++|+||.+|++||+||.||+.||||||+||+|++||||+||||
T Consensus 1 ~giPfldy~~y~~rvlFp~~~~~~~p~~~~~~~~~~~~~~~~l~~f~~LL~nk~Fl~~fi~tlE~q~~fs~rDr~~vASL 80 (539)
T PF08337_consen 1 SGIPFLDYRTYAMRVLFPEPGIEDHPVLRELEESRRSTVEQGLRQFSQLLNNKHFLLTFIHTLESQRSFSMRDRCNVASL 80 (539)
T ss_dssp ----B--HHHHHHHHHS--TTTTT-TTCS---TTTHHHHHHHHHHHHHHHTSHHHHHHHHHHHHCSSSS-HHHHHHHHHH
T ss_pred CCCCcccHHHHHHHhCcCCCCCCCCCCccccccccchhHhHHHHHHHHHhcCchHHHHHHHHHHhCCCcccccchhhhhH
Confidence 59999999999999999 899999999998743 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-------HHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhHHhhhhcCchhHHHHHHHHccc
Q psy15505 1755 IMVTLQN-------ILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWFTFLLYKFLRECAGEPLYLLFRAMKQQV 1827 (2400)
Q Consensus 1755 l~v~l~~-------il~~Ll~~li~~~~~~~~~pkl~lRrtEsvvEkmltnW~s~~ly~~l~~~ag~pl~~L~~aik~Qv 1827 (2400)
||+|||| ||++||.|||+|++++| ||||||||||||||||||||||||||+||||+||||||||||||||||
T Consensus 81 L~vaL~~kl~Y~T~Il~~LL~~li~~~~~~k-~pkLllRRTESVvEKmLtnW~sicLY~~Lke~aGepLf~L~~AiK~Qv 159 (539)
T PF08337_consen 81 LMVALQGKLEYATDILKTLLADLIEKSVESK-NPKLLLRRTESVVEKMLTNWMSICLYQFLKECAGEPLFLLYKAIKQQV 159 (539)
T ss_dssp HHHHTGGGHHHHHHHHHHHHHHHHHHHHHTT--CCCTTSSSSSHHHHHHHHHHHHHTHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHhcC-CCccchhhhhHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 9999999 99999999999998876 999999999999999999999999999999999999999999999999
Q ss_pred cccCcceeecccccccchhhhhcccceeeeEEee-----------------------echhhHHhhhccCCCCCCCCCCC
Q psy15505 1828 DKGPVDAITAEARYSLSEEKLIRHAIDFKPMTVY-----------------------VKEKSLDTIYRATPYSLRPRKDD 1884 (2400)
Q Consensus 1828 ekGPvDaitg~ArytL~e~~Llr~~i~~~~l~l~-----------------------vKeKild~~yk~~p~s~rp~~~~ 1884 (2400)
||||||||||||||||||+|||||+|||++|||+ ||||||||+|||+||||||+++|
T Consensus 160 eKGPVDaiTg~ArYTLnE~~LLre~id~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d 239 (539)
T PF08337_consen 160 EKGPVDAITGKARYTLNEDKLLREQIDYKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADD 239 (539)
T ss_dssp CTS-B-TTT--BTT-SSCCCB--SSS-S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGG
T ss_pred hccChhhhhcceeeeechhhhhccccceEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccc
Confidence 9999999999999999999999999999999988 99999999999999999999999
Q ss_pred cceEEeeCCCCcEEEecCCCCceeeCceEEEeeccCCCCCCCcEEEEEeeeccccccccCCCcccccccccccCCCCCCc
Q psy15505 1885 LDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQYNLSILSEKTDKYETLNLSKMGRNTSPLN 1964 (2400)
Q Consensus 1885 ~dlew~~~~~~~~~L~d~D~ts~~~~~w~rlNTl~hY~v~d~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1964 (2400)
+|||||+|++|+++|+|+|.||+++|+|||||||+||+|||||+|+|+||++...+.+..+ +....++++|+++
T Consensus 240 ~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dga~vaLv~k~~~~~~~~~~~------~~~~~~~~~~~~~ 313 (539)
T PF08337_consen 240 VDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPDGATVALVPKQHSSYNQSYSS------SPDSSRSRTPMIS 313 (539)
T ss_dssp EEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--TTEEEEEEES------------------------------
T ss_pred cceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCCCceEEEeeccccccccCccc------CCCcccccCcccc
Confidence 9999999999999999999999999999999999999999999999999995322111100 1111256789999
Q ss_pred cCCCCCceeEEeecCCCC-CccccCcC-----CcccchhHHhhhhhccccchhhhhHhHHhhhhccCcCCCCCCcchhhh
Q psy15505 1965 RDHDGMAKEWHLVKHHDS-DNQKEGER-----SNKMVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYM 2038 (2400)
Q Consensus 1965 ~~~~~~~~~~HLvk~~~~-~~~~~~~~-----~~k~i~EiyltrLls~Kgtlq~fvdd~f~~i~~~~~~~~~~P~aiKy~ 2038 (2400)
++.++|.|+||||||+|+ .+.++++| ++|+||||||||||+|||||||||||||++||++ +++++|+|||||
T Consensus 314 ~~~~~g~k~~HLVk~~~~~~~~~~~~~~~~~~~~k~i~EIyLTRLLstKgtlqkfVDdlf~si~s~--~~~~~P~aIKY~ 391 (539)
T PF08337_consen 314 DDQESGTKYWHLVKPHDELMDQKKGDRSSHRERKKMIPEIYLTRLLSTKGTLQKFVDDLFESIFSV--RNSKLPLAIKYF 391 (539)
T ss_dssp -------EEESSS-------------SS---TSS---TCHHHHHHHHHHHHHHHHHHHHHHHHT-S--CCCB--HHHHHH
T ss_pred ccccccccccCccCchhhhcccccCccccchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCccHHHH
Confidence 999999999999999998 45666665 7899999999999999999999999999999998 357999999999
Q ss_pred hhccHHHHHhcCCCCchhhcccccCCCcceeeeecccCCCeeeeeccCCCCCcceeeehhhhccccccCCcccCCCCCCc
Q psy15505 2039 FDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLIKNPNFVFDIHKSNIVDSCLSVVAQTFMDSCSTSDHRLGKDSPSS 2118 (2400)
Q Consensus 2039 FDflD~~A~~~~i~d~~~~h~WKtN~lpLRFWvn~ikNp~fvfDi~~s~~vd~~lsviaqtfmdacs~se~~lgkdspsn 2118 (2400)
||||||||+||||+||||+|+||||||||||||||||||||||||+||++|||||||||||||||||++|||||||||||
T Consensus 392 FDfLDeqA~k~~i~Dpev~H~WKtNsLpLRFWVNiiKNP~FvFDi~ks~~vDacLSVIAQtfmDaCS~se~~lgkdSPsn 471 (539)
T PF08337_consen 392 FDFLDEQAEKHGITDPEVLHIWKTNSLPLRFWVNIIKNPQFVFDIHKSPTVDACLSVIAQTFMDACSTSEHKLGKDSPSN 471 (539)
T ss_dssp HHHHHHHHHTTT---HHHHHHHHHCCTTTTCHHHHHH-GGGTBS----HHHHHHHHHHHHHHHHHHSSS-----TTS-HH
T ss_pred hcccHHHHHhcCCCCcchhhHHhhhhhHHHHHHHHhcCcceEEeeecCcchhhHHHHHHHHHHHhhcccccccCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHhhHHHH
Q psy15505 2119 KLLYAKDIPAYKEWVERYYSDIKSMQAISDQDMNAMLAEESRLHNSEFSTNCALYELYTYASKYNEQL 2186 (2400)
Q Consensus 2119 klLyakdip~yk~~v~~yy~~I~~~p~~s~qem~~~l~~~s~~~~~~f~~~~al~ely~y~~~y~~~i 2186 (2400)
|||||||||+||+||++||++|++||++|+||||++|+|+|+.|+++||+++||+|||+|++||++||
T Consensus 472 KLLyAKdIp~Yk~~V~~YY~~I~~~p~vs~qem~~~l~e~S~~~~~efn~~~AL~eLY~y~~ky~~qi 539 (539)
T PF08337_consen 472 KLLYAKDIPRYKKMVERYYKDIRNMPPVSDQEMNAYLAEESRKHSNEFNTLSALHELYKYIKKYYDQI 539 (539)
T ss_dssp HHHCTTTHHHHHHHHHHHHHHHHHS----HHHHHHHHHHHHHCTTTSSSHHHHHHHHHHHHHHTHHHH
T ss_pred hccccccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
No 3
>KOG3611|consensus
Probab=100.00 E-value=2e-47 Score=496.58 Aligned_cols=361 Identities=22% Similarity=0.358 Sum_probs=290.4
Q ss_pred cccccCccc----ccCCEEEEecc----ceeEeeeccccc----ccccCeeeEEEecCCCCceEEEEcCCCCCCCCceeE
Q psy15505 371 AAECKAPIY----HTNPILILCVS----GTCTVRSLQNIS----DIVQNVREAVVANNGNASTFAFIAPGPPKPPSTHVM 438 (2400)
Q Consensus 371 ~dEC~~~~~----~~~~~LivCGS----GiC~lr~Lsni~----~~~~g~~~~vasnd~~~StVGvI~~g~~~~~~~~~L 438 (2400)
..||.|.+. .++++|++||| +.|..+++.+.. ....|+..|++ ||.+..+++++.| .|
T Consensus 111 ~~eC~N~irvL~~~~~~~L~vCGT~Af~P~C~~~~~~~~~~~~~~~~~g~g~CP~--dP~~nstav~~~~--------~L 180 (737)
T KOG3611|consen 111 ETECRNYIRVLAPRNNGHLYVCGTNAFNPVCRNYNVTTLQESVQRLESGIGRCPY--DPKHNSTAVFVDG--------EL 180 (737)
T ss_pred hhHccceeEEEeecCCCeEEEeecccCCcchhhhccccccccCccccCCceeCCC--CCCcCceEEEECC--------EE
Confidence 568999753 56669999999 999999999864 35678888998 7777778888865 69
Q ss_pred EEEEEeeCCCCCCCCCCeeEEeeCCCCccceecccceeeeeeeeeccccccccceeeEEeeecCCEEEEEEEeeccCC--
Q psy15505 439 YVGVTFTGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVNNLARERYIINYVYGFSSEGFSYFLTTQLKSNI-- 516 (2400)
Q Consensus 439 yVGtt~~~~~~yr~~~paIS~R~L~~~~~f~~~~~~v~s~~~i~v~~~~~~~y~~~FV~sF~~g~fVYFlf~e~~~~~-- 516 (2400)
|.|+..++.+ ..++.+|+++..+.+. + ..........|+||.+|..+++|||||+|.+.+.
T Consensus 181 ys~t~~dF~g-----~d~~I~Rs~g~~~~lr-------T-----~~~dskwLneP~FV~a~~i~~~vyFFFrE~a~e~~~ 243 (737)
T KOG3611|consen 181 YSGTVADFLG-----SDALIYRSLGKNPTLR-------T-----VKYDSKWLNEPNFVGAFDIGDHVYFFFREIAVENNN 243 (737)
T ss_pred EEEecccccC-----CCceEEEecCCCCCce-------e-----ccCCchhccCCcEEEeeeeCCEEEEEecccccccCc
Confidence 9999876652 2357789886544321 1 1112334568999999999999999999999975
Q ss_pred CCcceeeeEEEEecCCC--------CcceeeeEEEEccCCCC--ccccceeEEeecCCCCCcccccccCCCCcEEEEEEe
Q psy15505 517 GTSFYISKLVRICHDDS--------NYYSYTEIPITCNSNSG--KQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFA 586 (2400)
Q Consensus 517 ~~~~~~SRVaRVCk~D~--------~wtSY~Ea~L~Cs~p~~--~~yN~LQaa~v~~pG~~LA~~Lgi~~~~~vLyaVFS 586 (2400)
.++..++|||||||+|. +||||+||||+|+.|++ +|||.+|++++.... .. .+++||||+
T Consensus 244 ~~~~v~sRVARVCknD~GG~~~l~~~WTSFLKARL~CSvp~~~~fyFn~lq~v~~~~~~---------~~-~~~~YgvFt 313 (737)
T KOG3611|consen 244 CGKAVYSRVARVCKNDVGGRRVLEKKWTSFLKARLNCSVPGDSPFYFNELQSVFLLVSL---------GG-RDVFYAVFS 313 (737)
T ss_pred ccceEEeeeeeEeccCCCCceEcccchhHhhhhheecccCCCCCCcccccceeeecccc---------CC-CceEEEEEc
Confidence 78999999999999994 99999999999999954 799999999863221 22 339999999
Q ss_pred ccCCCCCCCCCCCCCCccccccchHHHHHHhhcccceeecCCCCcceecc------CCCCCccccc-cCccCCcccCccc
Q psy15505 587 ESEAPDGEGSNRPKNSSALCIYPLASIRRKFMQNIKTCFSGQGNRGLDFI------SPAHPCVQTK-LQTIGEDFCGLDV 659 (2400)
Q Consensus 587 ~~~~~~~~~s~~P~~~SAVCvFsL~dI~~~F~~~~~~Cytg~~~~~lp~~------~~~~~C~~~~-~~~~~~~~C~~~~ 659 (2400)
++++. ..+||||+|+|++|+++|++.+++ ..+..+.|+||. +|||.|.+.. ...++++...+..
T Consensus 314 t~~n~--------~~~SAVC~f~l~dI~~vF~G~fk~-q~~~~~~W~pv~~~~vP~PRPG~C~~~~ss~~lpd~vl~Fik 384 (737)
T KOG3611|consen 314 TSSNS--------IPGSAVCAFSLSDIRAVFDGPFKE-QKGPNSAWLPVPGDKVPKPRPGTCANNGSSLDLPDDVLNFIK 384 (737)
T ss_pred ccccC--------cceeEEecCCHHHHHHHhCCcccc-ccCCcccceeccCCcCCCCCCCccCCCCCCCCCChhhhhhhh
Confidence 99972 357999999999999999998887 566778999996 5899999853 1123333222223
Q ss_pred cccCCc--cCCccceeEEEEe-c-eeeEEEEeee----cceEEEEEecCCCcEEEEEEeCC---cceEEEEEEEecCC-C
Q psy15505 660 NTPLGG--ENPIEAVAVLNFS-V-RCTAVAATST----GDYTVVFIGTDTGHLKKVVVETS---SIAIEYGDVKVDEN-M 727 (2400)
Q Consensus 660 ~~PL~~--~~pv~~~Pll~~~-~-~lTsVAV~~~----~~~TVvFLGTs~G~L~KV~l~~s---~~a~~ye~i~v~~g-s 727 (2400)
+||||. +.|+.++|++... + +||+|+||.. ..|+|+||||++|+||||+..+. ....++||+++++. +
T Consensus 385 ~HpLM~~~V~p~~~~P~l~~~~~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~ 464 (737)
T KOG3611|consen 385 THPLMDEAVPPVHGRPLLVKTGDYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAE 464 (737)
T ss_pred hCcccccccCCCCCCceEEecccceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCC
Confidence 599996 5789999999988 4 8999999966 78999999999999999987644 22347899999864 7
Q ss_pred eeeeeeEEeccCCEEEEEecceEEEEEEecccccccc--ccccc-c---Cc---cccccc
Q psy15505 728 TVNADLHLDSKAMHLYVMTERRVSKVKVQECKVYKTC--CLGFQ-P---TI---AACVAS 778 (2400)
Q Consensus 728 pV~~~L~Ld~~~~~LYV~T~~kV~kVPv~~Cs~YtsC--Cl~ar-P---W~---~~Cvss 778 (2400)
||. +|.|++.++.|||++..+|+|||+++|+.|.+| |.++| | |+ .+|+..
T Consensus 465 pI~-~m~Ls~~~~~LyVgs~~gV~qvpl~~C~~y~~C~dcclarDPYCAWd~~~~~C~~~ 523 (737)
T KOG3611|consen 465 PIR-SMQLSSKRGSLYVGSRSGVVQVPLARCSRYGSCADCCLARDPYCAWDGVNSKCSLL 523 (737)
T ss_pred cee-EEEecccCCeEEEEccCcEEEeehhHhhcccchhhhhhccCCCccccCCCCcceEC
Confidence 888 999999999999999999999999999999999 66668 8 97 478764
No 4
>smart00630 Sema semaphorin domain.
Probab=100.00 E-value=2.6e-43 Score=439.24 Aligned_cols=293 Identities=25% Similarity=0.414 Sum_probs=227.1
Q ss_pred cccccCcc----cccCCEEEEecc----ceeEeeecccccccccCeeeEEEecCCCCceEEEEcCCCCCCCCceeEEEEE
Q psy15505 371 AAECKAPI----YHTNPILILCVS----GTCTVRSLQNISDIVQNVREAVVANNGNASTFAFIAPGPPKPPSTHVMYVGV 442 (2400)
Q Consensus 371 ~dEC~~~~----~~~~~~LivCGS----GiC~lr~Lsni~~~~~g~~~~vasnd~~~StVGvI~~g~~~~~~~~~LyVGt 442 (2400)
..+|.|.+ ..++++||+||| |+|++++++ .||||+
T Consensus 56 ~~dc~N~irll~~~~~~~L~~CGT~a~~p~C~~~~l~-------------------------------------~ly~gt 98 (390)
T smart00630 56 PTDCVNYIRLLLDYNDDRLLVCGTNAFQPVCRLINLG-------------------------------------ELYVGT 98 (390)
T ss_pred cccCcceEEEEEEcCCCEEEEeCCCCCCCceeEEecC-------------------------------------ceEEEE
Confidence 46788865 246789999999 999999986 499999
Q ss_pred EeeCCCCCCCCCCeeEEeeCCCCccceecccceeeeeeeeeccccccccceeeEEeeecCCEEEEEEEeeccCC--CCcc
Q psy15505 443 TFTGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVNNLARERYIINYVYGFSSEGFSYFLTTQLKSNI--GTSF 520 (2400)
Q Consensus 443 t~~~~~~yr~~~paIS~R~L~~~~~f~~~~~~v~s~~~i~v~~~~~~~y~~~FV~sF~~g~fVYFlf~e~~~~~--~~~~ 520 (2400)
++++.+..+-..++++.|.|... .+..+.+ .....++.++++||++|.+++||||||+|++.+. .++.
T Consensus 99 ~~~~~~~~~~i~r~~~~r~l~~~-----~~~~l~t-----~~~~~~~l~~~~FV~sf~~~~~vYFff~e~~~e~~~~~~~ 168 (390)
T smart00630 99 VADFSGSDPAIPRSLSVRRLKGT-----SGVSLRT-----VLYDSKWLNEPNFVYAFESGDFVYFFFRETAVEDDNCGKA 168 (390)
T ss_pred ecccCCCCcceeccccccccccc-----cCceeec-----cccCcccccCCcEEEEEEcCCEEEEEEEEEccccCcCCce
Confidence 98754211101234444544322 1112222 1113445689999999999999999999998853 6788
Q ss_pred eeeeEEEEecCC--------CCcceeeeEEEEccCCC--CccccceeEEeecCCCCCcccccccCCCCcEEEEEEeccCC
Q psy15505 521 YISKLVRICHDD--------SNYYSYTEIPITCNSNS--GKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEA 590 (2400)
Q Consensus 521 ~~SRVaRVCk~D--------~~wtSY~Ea~L~Cs~p~--~~~yN~LQaa~v~~pG~~LA~~Lgi~~~~~vLyaVFS~~~~ 590 (2400)
++|||||||++| ++|+||+||||+|+.|+ +++||+|||||+++|| .+++++|||||+++++
T Consensus 169 ~~SRVaRVCk~D~Gg~~~l~~~wtSflka~L~Cs~~g~~~~~fn~lQ~v~~~~~g---------~~~~~vlygvFst~~~ 239 (390)
T smart00630 169 VHSRVARVCKNDVGGPRSLDKKWTSFLKARLECSVPGESPFYFNELQAAFLLPPG---------SESDDVLYGVFSTSSN 239 (390)
T ss_pred eeeeeeeecccCcCccccccccccEEEEEEEEecCCCcCCccchhhhheeecccC---------CCCCCEEEEEEeCCCC
Confidence 999999999999 79999999999999875 5799999999999987 4689999999999875
Q ss_pred CCCCCCCCCCCCccccccchHHHHHHhhcccceeecCCCCcceec----c--CCCCCcccccc--CccCC-cccCccccc
Q psy15505 591 PDGEGSNRPKNSSALCIYPLASIRRKFMQNIKTCFSGQGNRGLDF----I--SPAHPCVQTKL--QTIGE-DFCGLDVNT 661 (2400)
Q Consensus 591 ~~~~~s~~P~~~SAVCvFsL~dI~~~F~~~~~~Cytg~~~~~lp~----~--~~~~~C~~~~~--~~~~~-~~C~~~~~~ 661 (2400)
|+.+||||+|+|++|+++|++++++|+++.+ .|.++ . ++++.|.+.+. ..+++ .+|... .|
T Consensus 240 --------~~~~SAvC~f~l~~I~~~F~~~~~~~~~~~~-~~~~~~~~~vp~~rpg~C~~~~~~~~~~pd~~~~~~~-~~ 309 (390)
T smart00630 240 --------PIPGSAVCAFSLKDINAVFNGPFKECETSTS-QWLPYSRGKVPFPRPGTCPNKPPSSKDLPDEVLNFIK-SH 309 (390)
T ss_pred --------CCCccEEEEeEHHHHHHHHhhhhhhccCcCc-ceecccCCcCCCCCCCcCCCCCcccccCCchhhcccc-cc
Confidence 4679999999999999999999999998754 56544 1 47999998542 11333 355433 37
Q ss_pred cCC--ccCCccceeEEEEe--c-eeeEEEEeee---cceEEEEEecCCCcEEEEEEeCCc---ceEEEEEEEec-CCCee
Q psy15505 662 PLG--GENPIEAVAVLNFS--V-RCTAVAATST---GDYTVVFIGTDTGHLKKVVVETSS---IAIEYGDVKVD-ENMTV 729 (2400)
Q Consensus 662 PL~--~~~pv~~~Pll~~~--~-~lTsVAV~~~---~~~TVvFLGTs~G~L~KV~l~~s~---~a~~ye~i~v~-~gspV 729 (2400)
||| ++.|+.++|+|... + +||+|||+.+ .+|||+||||++|+|+||++.+.. .+..|++++++ .++||
T Consensus 310 pl~~~~v~p~~~~pl~~~~~~~~~lT~IaVd~v~~~~~~tV~flGT~~G~i~Kvv~~~~~~~~~~~~~ee~~v~~~~~pI 389 (390)
T smart00630 310 PLMDEVVQPLTGRPLFVKTDSNYLLTSIAVDRVATDGNYTVLFLGTSDGRILKVVLSRSSSSSESVVLEEISVFPDGSPV 389 (390)
T ss_pred ccccccccccCCcceEEecCccccEEEEEEEEEccCCcEEEEEEECCCCeEEEEEEcCCCCCccceEEEEEEecCCCCcC
Confidence 776 47899999999975 3 7999999765 499999999999999999987543 34789999998 56776
No 5
>PF01403 Sema: Sema domain; InterPro: IPR001627 The Sema domain occurs in semaphorins, which are a large family of secreted and transmembrane proteins, some of which function as repellent signals during axon guidance. Sema domains also occur in a hepatocyte growth factor receptor, in SEX protein [] and in viral proteins. CD100 (also called SEMA4D) is associated with PTPase and serine kinase activity. CD100 increases PMA, CD3 and CD2 induced T cell proliferation, increases CD45 induced T cell adhesion, induces B cell homotypic adhesion and down-regulates B cell expression of CD23. The Sema domain is characterised by a conserved set of cysteine residues, which form four disulphide bonds to stabilise the structure. The Sema domain fold is a variation of the beta propeller topology, with seven blades radially arranged around a central axis. Each blade contains a four- stranded (strands A to D) antiparallel beta sheet. The inner strand of each blade (A) lines the channel at the centre of the propeller, with strands B and C of the same repeat radiating outward, and strand D of the next repeat forming the outer edge of the blade. The large size of the Sema domain is not due to a single inserted domain but results from the presence of additional secondary structure elements inserted in most of the blades. The Sema domain uses a 'loop and hook' system to close the circle between the first and the last blades. The blades are constructed sequentially with an N-terminal beta- strand closing the circle by providing the outermost strand (D) of the seventh (C-terminal) blade. The beta-propeller is further stabilised by an extension of the N terminus, providing an additional, fifth beta-strand on the outer edge of blade 6 [, , ]. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0005515 protein binding; PDB: 3NVX_A 3NVQ_A 3OL2_A 1OLZ_B 3OKT_A 3AL9_B 3OKY_A 3AL8_B 3NVN_A 3OKW_A ....
Probab=100.00 E-value=1.5e-40 Score=422.65 Aligned_cols=330 Identities=29% Similarity=0.485 Sum_probs=246.4
Q ss_pred cccccCcc----cccCCEEEEecc----ceeEeeecccc---cc---cccCeeeEEEecCCCCceEEEEcCCCCCCCCce
Q psy15505 371 AAECKAPI----YHTNPILILCVS----GTCTVRSLQNI---SD---IVQNVREAVVANNGNASTFAFIAPGPPKPPSTH 436 (2400)
Q Consensus 371 ~dEC~~~~----~~~~~~LivCGS----GiC~lr~Lsni---~~---~~~g~~~~vasnd~~~StVGvI~~g~~~~~~~~ 436 (2400)
..+|.+.+ ..++++||+||| |+|++|+|+++ .. ........+++++|+.+++++++. .
T Consensus 56 ~~~c~N~i~vL~~~~~~~Li~CGT~~~~p~C~~~~l~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--------~ 127 (433)
T PF01403_consen 56 ETECNNYIKVLLVYNDNRLIVCGTNAFQPICRLRNLSNISCLFSLSPDESPSGQGVCPYDPNQSSVALVVN--------G 127 (433)
T ss_dssp TTTSSEBEEEEEEESSSEEEEEESTTTSCEEEEEETTTCEEEEEEEECCEEEGTTTS-SSTTSCEEEEEET--------T
T ss_pred cccCcceeEEEEecCCCEEEEcCccccccCccEeccccccceeeeecccccCCeeecccccCCCcceeccc--------c
Confidence 45677753 245559999999 99999999993 21 223344556677999999999984 3
Q ss_pred eEEEEEEeeCCCCCCCCCCeeEEeeCCCCccceecccceeeeeeeeeccccccccceeeEEeeecCCEEEEEEEeeccCC
Q psy15505 437 VMYVGVTFTGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVNNLARERYIINYVYGFSSEGFSYFLTTQLKSNI 516 (2400)
Q Consensus 437 ~LyVGtt~~~~~~yr~~~paIS~R~L~~~~~f~~~~~~v~s~~~i~v~~~~~~~y~~~FV~sF~~g~fVYFlf~e~~~~~ 516 (2400)
.||||++++.. +..| +.+|.+.....+......-. +..+..++..|.+.||++| +++||||||+|++.+.
T Consensus 128 ~lyvgt~~~~~----~~~~-~i~R~~~~~~~l~~~~~~~~----~~~~p~fv~~~~~~~v~~f-~~~~vYF~f~e~~~~~ 197 (433)
T PF01403_consen 128 ELYVGTTYDFS----GSSP-IISRSLGSQPPLRTEQYDSK----WLNEPSFVSSFEIGYVYGF-SDDFVYFFFRERASEY 197 (433)
T ss_dssp EEEEEEESSTT----SSSE-EEEEEETSSSTEESCCCCTT----SSSSTEEEEEEEEEECEEE-ETTEEEEEEEEEESSS
T ss_pred cEEEeeecccc----CCCc-ceeecccccccccccccccc----ccccccccccccccccccc-CCcEEEEEEEeecccc
Confidence 89999998743 2234 45788876555543222100 1122356678999999999 9999999999999864
Q ss_pred --CCcceeeeEEEEecCCC--------CcceeeeEEEEccCCC-C--ccccceeEEeecCCCCCcccccccCCCCcEEEE
Q psy15505 517 --GTSFYISKLVRICHDDS--------NYYSYTEIPITCNSNS-G--KQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFA 583 (2400)
Q Consensus 517 --~~~~~~SRVaRVCk~D~--------~wtSY~Ea~L~Cs~p~-~--~~yN~LQaa~v~~pG~~LA~~Lgi~~~~~vLya 583 (2400)
.++.++|||||||++|. .|+||+|++|+|+.++ + ++||+||++++++++. +++++|||
T Consensus 198 ~~~~~~~~srvaRvCk~D~g~~~~~e~~wttf~karL~C~~~~~~~~~~fn~lq~~~~~~~~~---------~~~~vlya 268 (433)
T PF01403_consen 198 DSCGKPYYSRVARVCKNDPGGYSYLEPLWTTFLKARLNCSVPGDGSPFYFNELQAVFVSKPGS---------GDDDVLYA 268 (433)
T ss_dssp STSSCCEEEEEEEEETTSSTBSSSCCTBESSEEEEEEECEETTCSCTEECHEEEEEEEEECTT---------TTSEEEEE
T ss_pred ccccccceeeeeeccccCCccccchhhccccccccceeccccCcCCCchhhhhhhhccccccc---------cCCceEEE
Confidence 36889999999999995 7889999999999876 3 5799999999999874 26899999
Q ss_pred EEeccCCCCCCCCCCCCCCccccccchHHHHHHhhcccceeecCCCCcceecc-----CCCCCccccccCccCCcccCcc
Q psy15505 584 VFAESEAPDGEGSNRPKNSSALCIYPLASIRRKFMQNIKTCFSGQGNRGLDFI-----SPAHPCVQTKLQTIGEDFCGLD 658 (2400)
Q Consensus 584 VFS~~~~~~~~~s~~P~~~SAVCvFsL~dI~~~F~~~~~~Cytg~~~~~lp~~-----~~~~~C~~~~~~~~~~~~C~~~ 658 (2400)
||+++|+. ..+||||+|+|++|+++|++.+ +|+.+....|+++. ++|+.|...+.. +++..|...
T Consensus 269 vFt~~~~~--------~~~SAvC~ysl~~I~~~F~g~~-~~~~~~~~~~~~~~~~~~~~~p~~C~~~~~~-~~~~~~~~~ 338 (433)
T PF01403_consen 269 VFTTSWNS--------SPGSAVCAYSLSDINQAFNGPF-KCCDGSTSKWLPYPNSVPSPRPGQCPNSSSN-LPDETLCFI 338 (433)
T ss_dssp EEEESSSS--------SSCEEEEEEEHHHHHHHHCSHB-EECCSCHTTBCCTTSCCCSSSTTC-TTSTTG-SHHHHHHHH
T ss_pred EEEecccc--------cCCceEEEEEHHHHHHHhhcch-hhcccccCccccccCcccCCccccccccccc-Ccccccccc
Confidence 99999872 3469999999999999995555 45565666788753 578899986542 344445544
Q ss_pred ccccCCc--cCCccceeEEEEec---eeeEEEEe--eecc--eEEEEEecCCCcEEEEE-EeCCc----ceEEEEEEEec
Q psy15505 659 VNTPLGG--ENPIEAVAVLNFSV---RCTAVAAT--STGD--YTVVFIGTDTGHLKKVV-VETSS----IAIEYGDVKVD 724 (2400)
Q Consensus 659 ~~~PL~~--~~pv~~~Pll~~~~---~lTsVAV~--~~~~--~TVvFLGTs~G~L~KV~-l~~s~----~a~~ye~i~v~ 724 (2400)
..||+|. +.|+.+.|++...+ ++|+|+|+ ...+ |||+||||++|+|||++ +.++. ....||+++++
T Consensus 339 ~~~~l~~~~v~~~~~~p~~~~~~~~~~~T~i~v~~v~~~~~~~tV~flGT~~G~l~K~v~~~~~~~~~~~~~~iee~~~~ 418 (433)
T PF01403_consen 339 KNHPLMDESVQPISGQPLFTRQGVNYRLTSIAVDRVQVENGSYTVAFLGTDDGRLHKKVVLSNSSSGHYESYIIEEIQVF 418 (433)
T ss_dssp HHSSBBCSEBS-CCGSCSEEEETSSS-EEEEEEEEEEETTTCEEEEEEEETTSEEEEEEEESSSSTCT-EEEEEEEEE-S
T ss_pred ccccCccccccCCCCcceeeeccccceeeEEEEEEEecCCCcEEEEEEecCCceEEEEEEecCCCCcccccEEEEEEeec
Confidence 4699986 48999999999886 59999999 4555 99999999999999654 54332 24589999998
Q ss_pred CC-CeeeeeeEEecc
Q psy15505 725 EN-MTVNADLHLDSK 738 (2400)
Q Consensus 725 ~g-spV~~~L~Ld~~ 738 (2400)
+. +||. +|+|+++
T Consensus 419 ~~~~pI~-~~~l~~~ 432 (433)
T PF01403_consen 419 PDSEPIQ-SMKLSPK 432 (433)
T ss_dssp TSC-EEE-EEEEETT
T ss_pred CCCCceE-EEEeccC
Confidence 75 5998 8988764
No 6
>KOG3610|consensus
Probab=100.00 E-value=5.3e-39 Score=421.21 Aligned_cols=339 Identities=27% Similarity=0.441 Sum_probs=298.4
Q ss_pred CCCceeeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEeCCc-cceeEEecCce-EEEEcCCCCCccceeEEEEECCC
Q psy15505 8 AGDGTLRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFIDDL-PCRITSVEPEM-AHCVTSASDRQRNGKLSMKFDKG 85 (2400)
Q Consensus 8 ~~~~~~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtVG~~-pC~I~~v~~t~-I~C~Tpps~~~g~~~V~V~~dg~ 85 (2400)
-..+++.+.+++|.+||.+|||.+||+|++|++|+.+.+.+|+. +|.+.++.+.. |.|+|++.++.+..+|.|.||+.
T Consensus 138 ~s~~~~~~~~~~P~~Gp~~ggt~v~~~Gs~l~~gs~~~~vv~~~~~c~~~~~~~~~~~~c~t~~~~~~~~~~~~v~f~~~ 217 (1025)
T KOG3610|consen 138 SSLQGPCFLSAEPVNGPASGGTQVHCTGSPLDTGSCPDCVVSGLGPCVISVVQDSAVIFCVTSSQGAGSEAPVLVSFDRT 217 (1025)
T ss_pred eeecceeEEeeccCcCCCCCCcceEEeccccccCCCceEEecCCccceeEeecCceEEEEecCCCCCCCccceEEEeccc
Confidence 34567889999999999999999999999999999999999999 99999888777 99999999888889999999999
Q ss_pred eeeecCcceEEeeCCceeeecCCCcCCCCCCCCceeccCCeEEEEEeccccccccCeEEEEEcCceeeeeeEEeccceeE
Q psy15505 86 TRFFDGSLYEYVEDPTIDSVDSGIQSGQGLKYPKGFPAGGTRINVVGKNLLYIKDPHIYVVYKDKKFVNSCEVMSNNYMI 165 (2400)
Q Consensus 86 ~~~~~~~~F~Y~enP~ItsIsP~~~~~~~~~P~~Sf~SGG~~ITV~G~nFd~Vq~p~m~V~~~~~~~~~~C~v~n~T~I~ 165 (2400)
.+...+..|.|+.||++.+|.| .+||.+||+.|++.|++|++||+|++.+...+.+..+.|++.|+|.|.
T Consensus 218 ~~~~~~~~f~y~~dps~~~i~P----------~~si~~gg~~i~v~G~~f~tVQ~~~i~~~~~~~~~~~~c~i~~~t~~~ 287 (1025)
T KOG3610|consen 218 PQKLTPLAFNYTADPSYSSVLP----------ATSIKYGGRFITVNGTYFLTVQRPRLDVQTSGLRRIRACSINNGTYME 287 (1025)
T ss_pred ccccCCCCcccccCCcceeccc----------eeeEeeCCEEEEEeeeeeeeccCceEEeeccceeecccccccccccee
Confidence 9888778899999999999998 668999999999999999999999999999998888899999999999
Q ss_pred EecCCccCCcCccCCCCCceeEEEEEECCceeecccccCCCCCceEccCCccccCcccc-cccccceEEEecccCCcccc
Q psy15505 166 CTAPTITGALDKIDEEHPEQLEYGFEMDNVTSVRNLSSKLNSPYFLFPNPIYEPFSEEI-KYYKSDYLTINGQHLDRASQ 244 (2400)
Q Consensus 166 C~sPal~~~~~~~~~~~~~~~~v~f~lDg~~s~~~ls~~~~~~f~Y~pdPvf~pfs~~v-~~~~g~~LtI~G~nL~~a~~ 244 (2400)
|.+|.+..+.+ .........++.|.+||.. . ....|.|+|||.|.+|.++- ...+++.++++|.||+++..
T Consensus 288 c~~P~~~~~~~-~~~~~~~~~~~~fl~d~~~--~-----~~~~f~~~~dp~f~~f~~~~~~~~p~~~~~~~g~nl~l~~~ 359 (1025)
T KOG3610|consen 288 CQTPLIFIPKR-RRGTIERKVEYTFLQDAQL--A-----RQIGFSYYPDPLFGVFAQSKDSHKPGERSVVCGFNINLADP 359 (1025)
T ss_pred eecccccCCcc-cccccccceeeeEEeechh--h-----cccCceecCCceEEeecccccccCCCCeeeeeccccccCCC
Confidence 99999986554 4444556789999999922 1 14569999999999998873 46677799999999999998
Q ss_pred cceEEEEEcCccceEEEeecceEEEeCCCCCCCCCCCCCCCcCCCCcEEEEEcCeEEEEEeEEEeCCCCCCCCCceee-e
Q psy15505 245 ESDVIVKIGTGFCNVTSVSRLQLTCRPPAEQPPNKNDDDESTAELPDVTVIVGNNLKFYIGKLSYSPPAALNSPLTKT-A 323 (2400)
Q Consensus 245 ~~ev~V~VG~~~C~Vtsls~t~L~C~~P~~~p~~~~~~~~~~~~lp~V~V~vGn~l~~~vG~V~Y~~~~~~~~Pl~~~-~ 323 (2400)
..++.|.+|+++|.++.++.++++|++|...|++ +.++|++|+ +++.+|.++|+.+.. +++. +
T Consensus 360 ~~~~~v~ig~~~C~~t~l~~~~l~c~~p~~~p~~-----------~~~~v~~g~-~~~~~g~l~~~s~~~----~~~~~~ 423 (1025)
T KOG3610|consen 360 FFDFIVEIGNVRCLVTFLTRNQLHCQPPSLTPNS-----------PGLEARMGN-LEYKLGLLVYSSESL----LSLFQA 423 (1025)
T ss_pred CcceEEEEcCcccceeecccCceeecChhhCCCC-----------CCeEEEcCc-eEEecCcEEEecccc----cchhhh
Confidence 8889999999999999999999999999999865 349999996 999999999987653 2222 4
Q ss_pred eecceehhhhhHHHHHhhhhheecccchhhhhhhhcccccccccccccccccCcccc
Q psy15505 324 MYGGIAIITILFLIFIAFLIAYRRKSTENTRVLKNMQEQMDILELRVAAECKAPIYH 380 (2400)
Q Consensus 324 ivgv~~~~~~llii~i~~ii~yrRKs~eaer~~~k~~~Qme~lE~sV~dEC~~~~~~ 380 (2400)
++++.+++.++++++++++.+|+||++++++++++.+.||+++|++++.||+++|+.
T Consensus 424 ~~~~~~~~~~~~l~~i~~~~~~~~k~~~s~~~~~~~~~qmdnlE~~v~~ecke~Fae 480 (1025)
T KOG3610|consen 424 VLLISIGLFLLVLLVIAVLLMSKRKSSQSQVELRKPQTQLDNLENDVIKECKEAFAE 480 (1025)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 555555666677777778899999999999999999999999999999999999983
No 7
>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=99.52 E-value=5.3e-14 Score=141.20 Aligned_cols=85 Identities=31% Similarity=0.556 Sum_probs=76.8
Q ss_pred eeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEeCCccceeEEecCceEEEEcCCCCCccceeEEEEECCCeeeecCc
Q psy15505 13 LRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSMKFDKGTRFFDGS 92 (2400)
Q Consensus 13 ~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtVG~~pC~I~~v~~t~I~C~Tpps~~~g~~~V~V~~dg~~~~~~~~ 92 (2400)
|.|++|+|++||.+|||+|||+|++|+.++.++|++|+.+|.+..++.++|+|+||++...+.+.|.|.+|+.... ...
T Consensus 1 P~I~~i~P~~Gp~~GGT~vtI~G~~~~~~~~~~V~ig~~~C~~~~~~~~~i~C~tp~~~~~~~~~v~V~~d~~~~~-~~~ 79 (85)
T cd01179 1 PSITSLSPSYGPQSGGTRLTITGKHLNAGSSVRVTVGGQPCKILSVSSSQIVCLTPPSASPGEAPVKVLIDGARRL-APL 79 (85)
T ss_pred CeeeEEcCCCCCCCCCEEEEEEEECCCCCCeEEEEECCeEeeEEEecCCEEEEECCCCCCCceEEEEEEECCcccC-CCc
Confidence 5799999999999999999999999999988999999999999998999999999998777888999999987443 456
Q ss_pred ceEEee
Q psy15505 93 LYEYVE 98 (2400)
Q Consensus 93 ~F~Y~e 98 (2400)
.|+|.|
T Consensus 80 ~F~Y~~ 85 (85)
T cd01179 80 VFTYTE 85 (85)
T ss_pred cEEEeC
Confidence 799975
No 8
>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=99.47 E-value=1.4e-13 Score=140.71 Aligned_cols=86 Identities=23% Similarity=0.367 Sum_probs=73.8
Q ss_pred eeEEEEecCCccCCCCcEEEEEEecCCCCC---cEEEEeCCccceeE---EecCceEEEEcCCCCCc-cceeEEEEECCC
Q psy15505 13 LRNQCVRQTKGPRSGGTILHISGSHMNAGS---RIEAFIDDLPCRIT---SVEPEMAHCVTSASDRQ-RNGKLSMKFDKG 85 (2400)
Q Consensus 13 ~~ItsIsPt~GP~aGGT~LTItG~~L~tGS---~v~VtVG~~pC~I~---~v~~t~I~C~Tpps~~~-g~~~V~V~~dg~ 85 (2400)
|.|++|+|.+||.+|||+|||+|+||+.+. .++|+||+.+|.+. .++.++|+|+|+++... +..+|.|.+|+.
T Consensus 1 P~I~~i~P~~Gp~~GGT~vTI~G~nl~~~~~~~~~~V~ig~~~C~i~~~~~~~~~~I~C~t~~~~~~~~~~~V~V~v~~~ 80 (94)
T cd01180 1 PVITEFFPLSGPLEGGTRLTICGSNLGLRKNDVRHGVRVGGVPCNPEPPEYSSSEKIVCTTGPAGNPVFNGPVEVTVGHG 80 (94)
T ss_pred CeeEEEeCCCCCCCCCEEEEEEEEcCCCCcccceeEEEECCEECcccCCCcCcCCEEEEECCCCCCCCcceEEEEEECCc
Confidence 579999999999999999999999999984 68999999999997 56778999999987654 789999999987
Q ss_pred e-eeecCcceEEee
Q psy15505 86 T-RFFDGSLYEYVE 98 (2400)
Q Consensus 86 ~-~~~~~~~F~Y~e 98 (2400)
. +......|+|.+
T Consensus 81 ~~~~~~~~~F~Y~~ 94 (94)
T cd01180 81 SFRTESSEGFSFVD 94 (94)
T ss_pred eecccccCceEEeC
Confidence 5 334456799974
No 9
>cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=99.44 E-value=2.9e-13 Score=139.62 Aligned_cols=99 Identities=32% Similarity=0.571 Sum_probs=79.6
Q ss_pred CceeeecCCCcCCCCCCCCceeccCCeEEEEEeccccccccCeEEEEEcCceeeeeeEEeccceeEEecCCccCCcCccC
Q psy15505 100 PTIDSVDSGIQSGQGLKYPKGFPAGGTRINVVGKNLLYIKDPHIYVVYKDKKFVNSCEVMSNNYMICTAPTITGALDKID 179 (2400)
Q Consensus 100 P~ItsIsP~~~~~~~~~P~~Sf~SGG~~ITV~G~nFd~Vq~p~m~V~~~~~~~~~~C~v~n~T~I~C~sPal~~~~~~~~ 179 (2400)
|+|++|+| .+||.||||.|||+|+|||++|+|+|+|++++.... .|.+.+++.|.|+||++...... .
T Consensus 1 P~I~~i~P----------~~g~~SGGt~itV~G~~Lds~q~p~~~V~~~~~~~~-~C~v~s~~~i~C~tP~~~~~~~~-~ 68 (99)
T cd01181 1 PTITRIEP----------EWSFLSGGTPITVTGTNLNTVQEPRIRVKYGGVEKT-SCKVRNSTLMTCPAPSLALLNRS-P 68 (99)
T ss_pred CEEEEecc----------CCCccCCCEEEEEEeeccCcccccEEEEEECCceec-cceeCCCCEEEeCCCCCcccccc-c
Confidence 88999987 789999999999999999999999999999986544 79999999999999998752110 1
Q ss_pred CCCCceeEEEEEECCceeecccccCCCCCceEcc
Q psy15505 180 EEHPEQLEYGFEMDNVTSVRNLSSKLNSPYFLFP 213 (2400)
Q Consensus 180 ~~~~~~~~v~f~lDg~~s~~~ls~~~~~~f~Y~p 213 (2400)
......+++.|.+||++++..+. +..|.|+|
T Consensus 69 ~~~~~~~~~~fd~~~v~~~~~~~---~~~f~y~p 99 (99)
T cd01181 69 EPGERPVEFGLDGDNVQSLLILN---RTSFSYYP 99 (99)
T ss_pred CCCCcCeEEEEeccchhhhhhcc---CCceEEeC
Confidence 12455678899999988654442 34688986
No 10
>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=99.43 E-value=4.4e-13 Score=137.08 Aligned_cols=92 Identities=42% Similarity=0.721 Sum_probs=78.2
Q ss_pred CeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCeeeecccceeecccEEEEEeCCCCCCCCccccEEEEEcc
Q psy15505 916 PEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVCQVDGPGTRGSREGPVIVKIED 995 (2400)
Q Consensus 916 P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~~C~v~~~~y~~st~IvC~tpps~~~~~~~G~V~V~V~~ 995 (2400)
|+|++|+|..||.+|||+|||+|+||+...+|....|+||+.+|.+.+..|..+++|+|+++++.. ....++|.|.+.+
T Consensus 1 P~I~~i~P~~Gp~~GGT~vTI~G~nl~~~~~~~~~~V~ig~~~C~i~~~~~~~~~~I~C~t~~~~~-~~~~~~V~V~v~~ 79 (94)
T cd01180 1 PVITEFFPLSGPLEGGTRLTICGSNLGLRKNDVRHGVRVGGVPCNPEPPEYSSSEKIVCTTGPAGN-PVFNGPVEVTVGH 79 (94)
T ss_pred CeeEEEeCCCCCCCCCEEEEEEEEcCCCCcccceeEEEECCEECcccCCCcCcCCEEEEECCCCCC-CCcceEEEEEECC
Confidence 789999999999999999999999999887666678999999999976668888999999998752 1367889999875
Q ss_pred c--ccccccceEEeC
Q psy15505 996 F--RGQSKDNYQFVD 1008 (2400)
Q Consensus 996 ~--~~~S~~~FtY~~ 1008 (2400)
. ...+...|+|++
T Consensus 80 ~~~~~~~~~~F~Y~~ 94 (94)
T cd01180 80 GSFRTESSEGFSFVD 94 (94)
T ss_pred ceecccccCceEEeC
Confidence 3 466778999973
No 11
>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=99.43 E-value=5.7e-13 Score=133.77 Aligned_cols=74 Identities=35% Similarity=0.600 Sum_probs=69.3
Q ss_pred cEEEEEecCceecCCCcEEEEEeecCCCCCcEEEEECCceeEEEEecCceEEEEcCCCCCCceeEeEeeeeEEEECCce
Q psy15505 1009 PVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSESNTQHSFTELV 1087 (2400)
Q Consensus 1009 P~ItsIsP~~GP~sGGT~VTItGs~L~~gs~v~V~IG~~~C~i~s~s~t~I~C~Tp~~~~~~~v~V~~~~v~V~~d~~~ 1087 (2400)
|.|++|+|..||.+|||+|||+|+||+.++.++|+||+.+|.+...++++|+|+||++...+.++|. |.+|+..
T Consensus 1 P~I~~i~P~~Gp~~GGT~vtI~G~~~~~~~~~~V~ig~~~C~~~~~~~~~i~C~tp~~~~~~~~~v~-----V~~d~~~ 74 (85)
T cd01179 1 PSITSLSPSYGPQSGGTRLTITGKHLNAGSSVRVTVGGQPCKILSVSSSQIVCLTPPSASPGEAPVK-----VLIDGAR 74 (85)
T ss_pred CeeeEEcCCCCCCCCCEEEEEEEECCCCCCeEEEEECCeEeeEEEecCCEEEEECCCCCCCceEEEE-----EEECCcc
Confidence 8999999999999999999999999999988999999999999999999999999998877888888 8999873
No 12
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=99.24 E-value=3.3e-11 Score=121.85 Aligned_cols=86 Identities=29% Similarity=0.578 Sum_probs=74.0
Q ss_pred eeEEEEecCCccCCCCcEEEEEEecCCCCC-cEEEEeCCccceeEEecCceEEEEcCCCCCccceeEEEEECCCe---ee
Q psy15505 13 LRNQCVRQTKGPRSGGTILHISGSHMNAGS-RIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSMKFDKGT---RF 88 (2400)
Q Consensus 13 ~~ItsIsPt~GP~aGGT~LTItG~~L~tGS-~v~VtVG~~pC~I~~v~~t~I~C~Tpps~~~g~~~V~V~~dg~~---~~ 88 (2400)
|.|++|+|..||.+|||.|||+|.||+.+. +.+|++|+.+|.+...++++|+|.+|+....+..+|.|.+++.. +.
T Consensus 1 P~I~~i~P~~g~~~Ggt~vtI~G~~f~~~~~~~~V~ig~~~C~~~~~~~~~i~C~~p~~~~~~~~~v~v~v~~~~~~~~~ 80 (90)
T cd00603 1 PVITSISPSSGPLSGGTRLTITGSNLGSGSPRVRVTVGGVPCKVLNVSSTEIVCRTPAAATPGEGPVEVTVDGANVSARV 80 (90)
T ss_pred CeEEEEcCCCCCCCCCeEEEEEEECCCCCCceEEEEECCEECcEEecCCCEEEEECCCCCCCCcEeEEEEECCccccccc
Confidence 579999999999999999999999998885 78999999999999889999999999976655688899998775 33
Q ss_pred ecCcceEEee
Q psy15505 89 FDGSLYEYVE 98 (2400)
Q Consensus 89 ~~~~~F~Y~e 98 (2400)
.....|+|.+
T Consensus 81 ~~~~~F~Y~~ 90 (90)
T cd00603 81 LSNTTFTYVE 90 (90)
T ss_pred cCCcceEEeC
Confidence 4455698863
No 13
>cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=99.18 E-value=6e-11 Score=122.57 Aligned_cols=83 Identities=14% Similarity=0.292 Sum_probs=68.2
Q ss_pred eeEEEEecCCccCCCCcEEEEEEecCCCCC--cEEEEeCCc---cceeEEecCceEEEEcCCCCC------ccceeEEEE
Q psy15505 13 LRNQCVRQTKGPRSGGTILHISGSHMNAGS--RIEAFIDDL---PCRITSVEPEMAHCVTSASDR------QRNGKLSMK 81 (2400)
Q Consensus 13 ~~ItsIsPt~GP~aGGT~LTItG~~L~tGS--~v~VtVG~~---pC~I~~v~~t~I~C~Tpps~~------~g~~~V~V~ 81 (2400)
|+|++|+|.+||.||||+|||+|+||++|+ .+.|.+++. +|.+ .++++|+|.||+... .+..+|.+.
T Consensus 1 P~I~~i~P~~g~~SGGt~itV~G~~Lds~q~p~~~V~~~~~~~~~C~v--~s~~~i~C~tP~~~~~~~~~~~~~~~~~~~ 78 (99)
T cd01181 1 PTITRIEPEWSFLSGGTPITVTGTNLNTVQEPRIRVKYGGVEKTSCKV--RNSTLMTCPAPSLALLNRSPEPGERPVEFG 78 (99)
T ss_pred CEEEEeccCCCccCCCEEEEEEeeccCcccccEEEEEECCceecccee--CCCCEEEeCCCCCcccccccCCCCcCeEEE
Confidence 579999999999999999999999999998 678888987 9998 467899999998765 356788999
Q ss_pred ECCCeee----ecCcceEEe
Q psy15505 82 FDKGTRF----FDGSLYEYV 97 (2400)
Q Consensus 82 ~dg~~~~----~~~~~F~Y~ 97 (2400)
||+.... .....|.|.
T Consensus 79 fd~~~v~~~~~~~~~~f~y~ 98 (99)
T cd01181 79 LDGDNVQSLLILNRTSFSYY 98 (99)
T ss_pred EeccchhhhhhccCCceEEe
Confidence 9976422 133357775
No 14
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=99.16 E-value=1.4e-10 Score=117.31 Aligned_cols=74 Identities=35% Similarity=0.632 Sum_probs=66.3
Q ss_pred cEEEEEecCceecCCCcEEEEEeecCCCCC-cEEEEECCceeEEEEecCceEEEEcCCCCCCceeEeEeeeeEEEECCce
Q psy15505 1009 PVIKSIQPLQGPRSGGTILHISGSHMNAGS-RIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSESNTQHSFTELV 1087 (2400)
Q Consensus 1009 P~ItsIsP~~GP~sGGT~VTItGs~L~~gs-~v~V~IG~~~C~i~s~s~t~I~C~Tp~~~~~~~v~V~~~~v~V~~d~~~ 1087 (2400)
|+|++|+|..||.+|||.|||.|+||+.+. +++|+||+.+|.+...++++|.|.+|+....+..+|. |.+++..
T Consensus 1 P~I~~i~P~~g~~~Ggt~vtI~G~~f~~~~~~~~V~ig~~~C~~~~~~~~~i~C~~p~~~~~~~~~v~-----v~v~~~~ 75 (90)
T cd00603 1 PVITSISPSSGPLSGGTRLTITGSNLGSGSPRVRVTVGGVPCKVLNVSSTEIVCRTPAAATPGEGPVE-----VTVDGAN 75 (90)
T ss_pred CeEEEEcCCCCCCCCCeEEEEEEECCCCCCceEEEEECCEECcEEecCCCEEEEECCCCCCCCcEeEE-----EEECCcc
Confidence 899999999999999999999999998874 8999999999999999999999999998766556666 7777765
No 15
>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.
Probab=99.15 E-value=2.1e-10 Score=115.15 Aligned_cols=86 Identities=26% Similarity=0.466 Sum_probs=72.9
Q ss_pred eeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEe-CCccceeEEecCceEEEEcCCCCCccceeEEEEECCCe--eee
Q psy15505 13 LRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFI-DDLPCRITSVEPEMAHCVTSASDRQRNGKLSMKFDKGT--RFF 89 (2400)
Q Consensus 13 ~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtV-G~~pC~I~~v~~t~I~C~Tpps~~~g~~~V~V~~dg~~--~~~ 89 (2400)
|.|++|+|..||.+|||.|||.|++|+.+.+++|.+ |+.+|.+..++++.|+|.+|+....+..+|.|.+++.. ...
T Consensus 1 P~I~~i~P~~g~~~GGt~itI~G~~f~~~~~~~v~~~g~~~c~~~~~~~~~i~C~~p~~~~~~~~~v~v~v~~~~~~~~~ 80 (89)
T cd00102 1 PVITSISPSSGPVSGGTEVTITGSNFGSGSNLRVTFGGGVPCSVLSVSSTAIVCTTPPYANPGPGPVEVTVDRGNGGITS 80 (89)
T ss_pred CEEeEEECCcCCCCCCeEEEEEEECCCCCCcEEEEEeCCCeEEEEEecCCEEEEECCCCCCCCcEEEEEEEeCCCCcccC
Confidence 578999999999999999999999999888899999 99999999889999999999876654567777777654 344
Q ss_pred cCcceEEee
Q psy15505 90 DGSLYEYVE 98 (2400)
Q Consensus 90 ~~~~F~Y~e 98 (2400)
....|+|.+
T Consensus 81 ~~~~F~Y~~ 89 (89)
T cd00102 81 SPLTFTYVP 89 (89)
T ss_pred CCccEEeeC
Confidence 555799863
No 16
>smart00429 IPT ig-like, plexins, transcription factors.
Probab=99.07 E-value=3.8e-10 Score=114.06 Aligned_cols=85 Identities=19% Similarity=0.289 Sum_probs=71.6
Q ss_pred eeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEe--CCccceeEEecCceEEEEcCCCC-CccceeE-EEEECCCeee
Q psy15505 13 LRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFI--DDLPCRITSVEPEMAHCVTSASD-RQRNGKL-SMKFDKGTRF 88 (2400)
Q Consensus 13 ~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtV--G~~pC~I~~v~~t~I~C~Tpps~-~~g~~~V-~V~~dg~~~~ 88 (2400)
|.|++|+|..||.+|||.|||+|+||+.++.+.+.+ ++.+|.+...++++|.|.||+.. ..+.++| .|.+++....
T Consensus 2 P~I~~i~P~~g~~~GGt~iti~G~nf~~~~~~~~~~~~~~~~c~~~~~~~~~i~C~tp~~~~~~~~~~v~~v~~~~~~~~ 81 (90)
T smart00429 2 PVITRISPTSGPVSGGTEITLCGKNLDSISVVFVEVGVGEAPCTFLPSSSTAIVCKTPPYHTIPGSVPVREVGLRNGGVP 81 (90)
T ss_pred CEEEEEccCcCcCCCCeEEEEeeecCCcceEEEEEEEeCCEEeEEeCCcceEEEEECCCCCCCCCCcCeEEEEEeCCCcc
Confidence 689999999999999999999999999998876666 45899998778899999999987 6677888 8888877665
Q ss_pred ecCcceEEe
Q psy15505 89 FDGSLYEYV 97 (2400)
Q Consensus 89 ~~~~~F~Y~ 97 (2400)
.....|+|.
T Consensus 82 ~~~~~f~y~ 90 (90)
T smart00429 82 SSPQPFTYV 90 (90)
T ss_pred CcccCeEEC
Confidence 444568873
No 17
>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.
Probab=99.05 E-value=1.1e-09 Score=110.02 Aligned_cols=74 Identities=32% Similarity=0.556 Sum_probs=64.1
Q ss_pred cEEEEEecCceecCCCcEEEEEeecCCCCCcEEEEE-CCceeEEEEecCceEEEEcCCCCCCceeEeEeeeeEEEECCce
Q psy15505 1009 PVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFI-DDLPCRITSVEPEMAHCVTSASDRQRNGKLSESNTQHSFTELV 1087 (2400)
Q Consensus 1009 P~ItsIsP~~GP~sGGT~VTItGs~L~~gs~v~V~I-G~~~C~i~s~s~t~I~C~Tp~~~~~~~v~V~~~~v~V~~d~~~ 1087 (2400)
|.|++|+|..||.+|||.|||.|+||+.+.+++|+| |+.+|.+...++++|+|.+|+....+..+|. |.+++..
T Consensus 1 P~I~~i~P~~g~~~GGt~itI~G~~f~~~~~~~v~~~g~~~c~~~~~~~~~i~C~~p~~~~~~~~~v~-----v~v~~~~ 75 (89)
T cd00102 1 PVITSISPSSGPVSGGTEVTITGSNFGSGSNLRVTFGGGVPCSVLSVSSTAIVCTTPPYANPGPGPVE-----VTVDRGN 75 (89)
T ss_pred CEEeEEECCcCCCCCCeEEEEEEECCCCCCcEEEEEeCCCeEEEEEecCCEEEEECCCCCCCCcEEEE-----EEEeCCC
Confidence 899999999999999999999999999887899999 9999999988999999999998766444455 5555543
No 18
>smart00429 IPT ig-like, plexins, transcription factors.
Probab=98.96 E-value=1.7e-09 Score=109.29 Aligned_cols=78 Identities=23% Similarity=0.363 Sum_probs=65.3
Q ss_pred CcEEEEEecCceecCCCcEEEEEeecCCCCCcEEEEEC--CceeEEEEecCceEEEEcCCCC-CCceeEe-EeeeeEEEE
Q psy15505 1008 DPVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFID--DLPCRITSVEPEMAHCVTSASD-RQRNGKL-SESNTQHSF 1083 (2400)
Q Consensus 1008 ~P~ItsIsP~~GP~sGGT~VTItGs~L~~gs~v~V~IG--~~~C~i~s~s~t~I~C~Tp~~~-~~~~v~V-~~~~v~V~~ 1083 (2400)
+|.|++|+|..||.+|||.|+|+|+||+.++.+.+.++ +.+|.+...++++|.|.+|+.. ....++| + +.+
T Consensus 1 ~P~I~~i~P~~g~~~GGt~iti~G~nf~~~~~~~~~~~~~~~~c~~~~~~~~~i~C~tp~~~~~~~~~~v~~-----v~~ 75 (90)
T smart00429 1 DPVITRISPTSGPVSGGTEITLCGKNLDSISVVFVEVGVGEAPCTFLPSSSTAIVCKTPPYHTIPGSVPVRE-----VGL 75 (90)
T ss_pred CCEEEEEccCcCcCCCCeEEEEeeecCCcceEEEEEEEeCCEEeEEeCCcceEEEEECCCCCCCCCCcCeEE-----EEE
Confidence 59999999999999999999999999999887766664 4899999888999999999987 5566666 5 777
Q ss_pred CCceeee
Q psy15505 1084 TELVQTL 1090 (2400)
Q Consensus 1084 d~~~~~~ 1090 (2400)
++.....
T Consensus 76 ~~~~~~~ 82 (90)
T smart00429 76 RNGGVPS 82 (90)
T ss_pred eCCCccC
Confidence 7665443
No 19
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....
Probab=98.92 E-value=4.9e-09 Score=103.93 Aligned_cols=83 Identities=22% Similarity=0.366 Sum_probs=72.0
Q ss_pred eeEEEEecCCccCCCCcEEEEEEecC-CCCCcEEEEeCCccceeE-EecCceEEEEcCCCCCccceeEEEEECCCeeeec
Q psy15505 13 LRNQCVRQTKGPRSGGTILHISGSHM-NAGSRIEAFIDDLPCRIT-SVEPEMAHCVTSASDRQRNGKLSMKFDKGTRFFD 90 (2400)
Q Consensus 13 ~~ItsIsPt~GP~aGGT~LTItG~~L-~tGS~v~VtVG~~pC~I~-~v~~t~I~C~Tpps~~~g~~~V~V~~dg~~~~~~ 90 (2400)
|.|++|+|..|+.+||+.|||+|.+| .....+.|.+|+..|.+. .++++.|+|.+|+.. .+.++|.|.+++......
T Consensus 1 P~I~si~P~~~~~~gg~~ItI~G~~f~~~~~~~~v~i~~~~~~~~~~~~~~~i~c~~p~~~-~~~~~v~v~~~~~~~~~~ 79 (85)
T PF01833_consen 1 PVITSISPNSGSISGGTNITITGSNFGSNSSNISVKIGGSQCTVITVVSSTQITCTSPALP-SGNVNVSVTVNGQQIYSN 79 (85)
T ss_dssp SEEEEEESSEEETTCTSEEEEEEESSESSSTTEEEEETTEEEEEEGEEETTEEEEE--SCS-SEEEEEEEEETTSEEEEE
T ss_pred CEEEEEECCeEecCCCEEEEEEEEeecccCCceEEEECCEeeeEEEEECCcEEEEEECCCC-CccEEEEEEECCcCeEEC
Confidence 67999999999999999999999999 555789999999999999 889999999999875 668999999999666566
Q ss_pred CcceEE
Q psy15505 91 GSLYEY 96 (2400)
Q Consensus 91 ~~~F~Y 96 (2400)
...|+|
T Consensus 80 ~~~F~Y 85 (85)
T PF01833_consen 80 NTSFTY 85 (85)
T ss_dssp EEEEEE
T ss_pred CeeeEC
Confidence 667887
No 20
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....
Probab=98.88 E-value=1.4e-08 Score=100.65 Aligned_cols=76 Identities=30% Similarity=0.415 Sum_probs=65.5
Q ss_pred cEEEEEecCceecCCCcEEEEEeecC-CCCCcEEEEECCceeEEE-EecCceEEEEcCCCCCCceeEeEeeeeEEEECCc
Q psy15505 1009 PVIKSIQPLQGPRSGGTILHISGSHM-NAGSRIEAFIDDLPCRIT-SVEPEMAHCVTSASDRQRNGKLSESNTQHSFTEL 1086 (2400)
Q Consensus 1009 P~ItsIsP~~GP~sGGT~VTItGs~L-~~gs~v~V~IG~~~C~i~-s~s~t~I~C~Tp~~~~~~~v~V~~~~v~V~~d~~ 1086 (2400)
|.|++|+|..|+.+||+.|+|+|++| .....+.|.||+..|.+. ..+++.|+|.+|+.. .+.++|. |.+++.
T Consensus 1 P~I~si~P~~~~~~gg~~ItI~G~~f~~~~~~~~v~i~~~~~~~~~~~~~~~i~c~~p~~~-~~~~~v~-----v~~~~~ 74 (85)
T PF01833_consen 1 PVITSISPNSGSISGGTNITITGSNFGSNSSNISVKIGGSQCTVITVVSSTQITCTSPALP-SGNVNVS-----VTVNGQ 74 (85)
T ss_dssp SEEEEEESSEEETTCTSEEEEEEESSESSSTTEEEEETTEEEEEEGEEETTEEEEE--SCS-SEEEEEE-----EEETTS
T ss_pred CEEEEEECCeEecCCCEEEEEEEEeecccCCceEEEECCEeeeEEEEECCcEEEEEECCCC-CccEEEE-----EEECCc
Confidence 89999999999999999999999999 445789999999999999 899999999999976 5577887 999994
Q ss_pred eeee
Q psy15505 1087 VQTL 1090 (2400)
Q Consensus 1087 ~~~~ 1090 (2400)
....
T Consensus 75 ~~~~ 78 (85)
T PF01833_consen 75 QIYS 78 (85)
T ss_dssp EEEE
T ss_pred CeEE
Confidence 4443
No 21
>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.
Probab=98.74 E-value=3.6e-08 Score=96.25 Aligned_cols=72 Identities=19% Similarity=0.319 Sum_probs=64.2
Q ss_pred cEEEEEecCceecCCCcEEEEEeecCCCCCcEEEEECCceeEEEEecCceEEEEcCCCCCCceeEeEeeeeEEEECCce
Q psy15505 1009 PVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSESNTQHSFTELV 1087 (2400)
Q Consensus 1009 P~ItsIsP~~GP~sGGT~VTItGs~L~~gs~v~V~IG~~~C~i~s~s~t~I~C~Tp~~~~~~~v~V~~~~v~V~~d~~~ 1087 (2400)
|+|+.|.|+.|+++|||.|+|.|.||..| ++|.||+..---..++...|+|.|||+..+|.|.|+ +++.+..
T Consensus 1 P~I~ai~P~eG~~tGGt~VtI~GenF~~g--l~V~FG~~~~w~e~isp~~i~~~tPP~~~pG~V~Vt-----l~~~~~~ 72 (85)
T cd01175 1 PCIKAISPSEGWTTGGATVIIIGDNFFDG--LQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVT-----LSYKSKQ 72 (85)
T ss_pred CcccEecCCCCcccCCeEEEEECCCCCCC--cEEEECCEeEEEEEeccceEEEecCCCCCCceEEEE-----EEECcee
Confidence 78999999999999999999999999877 789999997555567888999999999999999999 7777654
No 22
>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.
Probab=98.60 E-value=1.6e-07 Score=91.76 Aligned_cols=83 Identities=11% Similarity=0.191 Sum_probs=66.8
Q ss_pred eeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEeCCccceeEEecCceEEEEcCCCCCccceeEEEEECCCeeee-cC
Q psy15505 13 LRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSMKFDKGTRFF-DG 91 (2400)
Q Consensus 13 ~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtVG~~pC~I~~v~~t~I~C~Tpps~~~g~~~V~V~~dg~~~~~-~~ 91 (2400)
|.|.+|.|+.|+++|||.+||.|.||..| .+|.+|+..=--..+++..|.|.|||+..+|.+.|++++.+.+--. ..
T Consensus 1 P~I~ai~P~eG~~tGGt~VtI~GenF~~g--l~V~FG~~~~w~e~isp~~i~~~tPP~~~pG~V~Vtl~~~~~~~~~~~p 78 (85)
T cd01175 1 PCIKAISPSEGWTTGGATVIIIGDNFFDG--LQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTP 78 (85)
T ss_pred CcccEecCCCCcccCCeEEEEECCCCCCC--cEEEECCEeEEEEEeccceEEEecCCCCCCceEEEEEEECceeeccCCC
Confidence 57899999999999999999999999777 8889998852112456779999999999999999999998765322 22
Q ss_pred cceEEe
Q psy15505 92 SLYEYV 97 (2400)
Q Consensus 92 ~~F~Y~ 97 (2400)
..|.|.
T Consensus 79 ~~f~y~ 84 (85)
T cd01175 79 GRFVYT 84 (85)
T ss_pred ceEEec
Confidence 357775
No 23
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=98.12 E-value=1.5e-05 Score=80.03 Aligned_cols=64 Identities=16% Similarity=0.262 Sum_probs=56.8
Q ss_pred CcEEEEEecCceecCCCcEEEEEeecCCCCCcEEEEECCceeEEEEecCceEEEEcCCCCCCceeEeE
Q psy15505 1008 DPVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLS 1075 (2400)
Q Consensus 1008 ~P~ItsIsP~~GP~sGGT~VTItGs~L~~gs~v~V~IG~~~C~i~s~s~t~I~C~Tp~~~~~~~v~V~ 1075 (2400)
.|.|.+|.|..|+. |+.|||+|++|... ..+|+||+.+|.+.+.++++|+|..|.. ..+.+.|+
T Consensus 2 ~P~I~~i~P~~g~~--G~~VtI~G~gFg~~-~~~V~~g~~~a~v~s~sdt~I~~~vP~~-~aG~~~V~ 65 (81)
T cd02849 2 TPLIGHVGPMMGKA--GNTVTISGEGFGSA-PGTVYFGTTAATVISWSDTRIVVTVPNV-PAGNYDVT 65 (81)
T ss_pred CCEEeeEcCCCCCC--CCEEEEEEECCCCC-CcEEEECCEEeEEEEECCCEEEEEeCCC-CCceEEEE
Confidence 59999999999987 89999999999753 3589999999999999999999999975 46777887
No 24
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=98.12 E-value=1.1e-05 Score=80.91 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=60.1
Q ss_pred eeeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEeCCccceeEEecCceEEEEcCCCCCccceeEEEEECC
Q psy15505 12 TLRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSMKFDK 84 (2400)
Q Consensus 12 ~~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtVG~~pC~I~~v~~t~I~C~Tpps~~~g~~~V~V~~dg 84 (2400)
+|.|.+|.|..|+- |+.|||+|.+|.. ..-+|.+|+.+|.+.+.++++|+|..|.. .++...|.|.-.+
T Consensus 2 ~P~I~~i~P~~g~~--G~~VtI~G~gFg~-~~~~V~~g~~~a~v~s~sdt~I~~~vP~~-~aG~~~V~V~~~~ 70 (81)
T cd02849 2 TPLIGHVGPMMGKA--GNTVTISGEGFGS-APGTVYFGTTAATVISWSDTRIVVTVPNV-PAGNYDVTVKTAD 70 (81)
T ss_pred CCEEeeEcCCCCCC--CCEEEEEEECCCC-CCcEEEECCEEeEEEEECCCEEEEEeCCC-CCceEEEEEEeCC
Confidence 58899999999986 8889999999953 33579999999999999999999999864 6788899999763
No 25
>cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes. These enzymes are involved in the enzymatic hydrolysis of alpha-1,4 linkages of starch polymers and belong to the glycosyl hydrolase family 13. Most consist of three domains (A,B,C) but CGTase is more complex and has two additional domains (D,E). The function of the IPT/D domain is unknown.
Probab=98.02 E-value=2.6e-05 Score=78.23 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=55.6
Q ss_pred cEEEEEecCceecCCCcEEEEEeecCCCCCcEEEEECCceeEEEEecCceEEEEcCCCCCCceeEeE
Q psy15505 1009 PVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLS 1075 (2400)
Q Consensus 1009 P~ItsIsP~~GP~sGGT~VTItGs~L~~gs~v~V~IG~~~C~i~s~s~t~I~C~Tp~~~~~~~v~V~ 1075 (2400)
|.|.+|.|..|+. |+.|+|+|++|... ..+|+||+.+|.+.+.+++.|+|..|.. ..+...|+
T Consensus 1 P~I~~i~P~~g~p--G~~VtI~G~gFg~~-~~~V~~g~~~a~v~s~sdt~I~~~VP~~-~~g~~~i~ 63 (81)
T cd00604 1 PLIGSVGPVMGKP--GNTVTISGEGFGST-GGTVYFGGTAAEVLSWSDTSIVVEVPRV-APGNYNIS 63 (81)
T ss_pred CeEeeEcCCCCCC--CCEEEEEEECCCCC-ccEEEECCEEEEEEEECCCEEEEEeCCC-CCCceEEE
Confidence 8899999999997 89999999999662 4689999999999999999999999875 55666777
No 26
>cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes. These enzymes are involved in the enzymatic hydrolysis of alpha-1,4 linkages of starch polymers and belong to the glycosyl hydrolase family 13. Most consist of three domains (A,B,C) but CGTase is more complex and has two additional domains (D,E). The function of the IPT/D domain is unknown.
Probab=97.96 E-value=4e-05 Score=76.94 Aligned_cols=78 Identities=17% Similarity=0.145 Sum_probs=62.8
Q ss_pred eeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEeCCccceeEEecCceEEEEcCCCCCccceeEEEEE-CCCeeeecC
Q psy15505 13 LRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSMKF-DKGTRFFDG 91 (2400)
Q Consensus 13 ~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtVG~~pC~I~~v~~t~I~C~Tpps~~~g~~~V~V~~-dg~~~~~~~ 91 (2400)
|.|.+|.|..|+- |+.|||+|.+|.. +.-+|.+|+.+|.+.+.+++.|+|..|.. .++...|+|.. +|... .+
T Consensus 1 P~I~~i~P~~g~p--G~~VtI~G~gFg~-~~~~V~~g~~~a~v~s~sdt~I~~~VP~~-~~g~~~i~V~~~~G~~S--n~ 74 (81)
T cd00604 1 PLIGSVGPVMGKP--GNTVTISGEGFGS-TGGTVYFGGTAAEVLSWSDTSIVVEVPRV-APGNYNISVTTVDGVTS--NG 74 (81)
T ss_pred CeEeeEcCCCCCC--CCEEEEEEECCCC-CccEEEECCEEEEEEEECCCEEEEEeCCC-CCCceEEEEEECCCccc--Cc
Confidence 5799999999994 7778999999944 24679999999999999999999999864 67778898887 45432 34
Q ss_pred cceEE
Q psy15505 92 SLYEY 96 (2400)
Q Consensus 92 ~~F~Y 96 (2400)
..|+|
T Consensus 75 ~~f~~ 79 (81)
T cd00604 75 YNFEV 79 (81)
T ss_pred EeEEE
Confidence 45666
No 27
>TIGR03437 Soli_cterm Solibacter uncharacterized C-terminal domain. This model describes a protein domain found in 90 proteins of Solibacter usitatus Ellin6076, nearly always as the C-terminal domain of a much larger protein. No homologs to this domain are detected outside of S. usitatus, a member of the Acidobacteria.
Probab=96.87 E-value=0.044 Score=64.83 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=99.5
Q ss_pred CCCCcEEEEEeecCCCcc------------CCccceEEEeCeeeecccceeecccEEEEEeCCCCCCCCccccEEEEEcc
Q psy15505 928 WEGGTNVTINGINLGKTF------------KDIYGGVSVAGITCQPYESLYNRTTQIVCQVDGPGTRGSREGPVIVKIED 995 (2400)
Q Consensus 928 ~~GGT~VTI~GsNfg~~~------------~di~~~V~Vgg~~C~v~~~~y~~st~IvC~tpps~~~~~~~G~V~V~V~~ 995 (2400)
+.-|..+||.|+||+... .. .+|+|+|++..+ .|.+.+||.+.+|..- ..|...|.|..
T Consensus 2 vAPG~~vsIfG~~L~~~t~~~~~~plpt~l~G--v~V~vnG~~APl---~yvSp~QIN~qvP~~~----~~g~~~v~V~~ 72 (215)
T TIGR03437 2 VAPGSIVSIFGTNLAPATLTAAGGPLPTSLGG--VSVTVNGVAAPL---LYVSPGQINAQVPYEV----APGAATVTVTY 72 (215)
T ss_pred cCCCcEEEEEeccCCCccccccCCCCccccCC--eEEEECCEEEEE---EEeCcceEEEEeCCCc----CCCcEEEEEEe
Confidence 345788999999998532 12 379999998776 4888999999998643 23445555541
Q ss_pred cccccccceEEe----CcEEEEEec------------------CceecCCCcEEEEEeecCCC-------C---------
Q psy15505 996 FRGQSKDNYQFV----DPVIKSIQP------------------LQGPRSGGTILHISGSHMNA-------G--------- 1037 (2400)
Q Consensus 996 ~~~~S~~~FtY~----~P~ItsIsP------------------~~GP~sGGT~VTItGs~L~~-------g--------- 1037 (2400)
..+ .+..|+.. .|-|..... ..-|..=|..|+|.|++|.. |
T Consensus 73 ~g~-~s~~~~v~va~~aPgiFt~~~~g~g~~a~~~~~d~s~~~~~~PA~~G~~i~iy~TG~G~~~p~~~~G~~~~~~~~~ 151 (215)
T TIGR03437 73 NGG-ASAAVTVTVAAAAPGIFTLDGSGTGQAAALNNQDGSVNSAANPAAPGDVVVLYATGLGPTSPAVADGAPAPSSPLA 151 (215)
T ss_pred CCc-ccceEEEEeeccccEEEEecCCCCcceeEEEcCCCccccCCCCCCCCCEEEEEEeCCCCCCCccccCccccCCccc
Confidence 111 11223222 344443221 12366778999999999952 1
Q ss_pred ---CcEEEEECCceeEEEEe-------cCceEEEEcCCCCCCceeEeEeeeeEEEECCcee
Q psy15505 1038 ---SRIEAFIDDLPCRITSV-------EPEMAHCVTSASDRQRNGKLSESNTQHSFTELVQ 1088 (2400)
Q Consensus 1038 ---s~v~V~IG~~~C~i~s~-------s~t~I~C~Tp~~~~~~~v~V~~~~v~V~~d~~~~ 1088 (2400)
..++|+||+.++.+... --.+|..+.|+....|.++|. +.+++...
T Consensus 152 ~~~~~v~vtigG~~a~V~yaGlaPg~~Gl~QvNv~vP~~~~~G~~~v~-----itvgg~~S 207 (215)
T TIGR03437 152 PALAPVTVTIGGVPATVLYAGLAPGFVGLYQVNVRVPAGLATGAVPVV-----ITVGGVTS 207 (215)
T ss_pred cccCCeEEEECCEEeeEEEeccCCCCCceEEEEEEcCCCCCCCcEeEE-----EEECCccC
Confidence 34789999999998742 234789999987778889998 99998754
No 28
>cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP. Disabled 2 interactive protein, (DAB2IP; also known as ASK-interacting protein 1 (AIP1)), is a member of the GTPase-activating proteins, down-regulates Ras-mediated signal pathways, and mediates TNF-induced activation of ASK1-JNK signaling pathways. The mechanism by which TNF signaling is coupled to DAB2IP is not known.
Probab=96.27 E-value=0.016 Score=72.20 Aligned_cols=293 Identities=17% Similarity=0.293 Sum_probs=191.5
Q ss_pred HHHhhccCchhHhHHHHhhccCCCCCcccchhhHHHHHHHHHH--HHHHHHHHHHHHHhcCCC-CCccccccchHHHHHH
Q psy15505 1719 LFGQLIQNKTFLLLFIRTLESNRYFSMRDRVNVASLIMVTLQN--ILKTLLAELIEKCMEGKS-HPKLLLRRTESVAEKM 1795 (2400)
Q Consensus 1719 ~f~~ll~~k~Fl~~fi~tlE~q~~fs~rdr~~~aSLl~v~l~~--il~~Ll~~li~~~~~~~~-~pkl~lRrtEsvvEkm 1795 (2400)
.|..+|.+.- ..+..+||. -++.+||.-+|+-|.-.++. ....+|.+||.+-++.-. ++.++||+ .|+|=||
T Consensus 5 ~~~~~~~~~~--~~l~~~l~~--~~~~~~~~ela~~Lv~if~~~~~~~~~l~~Li~~EI~~~~~~~~~lfRg-Nsl~tK~ 79 (309)
T cd05136 5 EFAEYLTSNY--ARLCEVLEP--VLSVRAKEELACALVHVLQSTGKAKDFLTDLVMAEVDRCGENERLIFRE-NTLATKA 79 (309)
T ss_pred HHHHHHHhhH--HHHHHHHHh--hCCchhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhccccHHHHHhc-CcHHHHH
Confidence 4555555533 566788886 78899999999999999998 777788888877775434 68888876 5999999
Q ss_pred HHHHHHHHHhHHhhhhcCchhHHHHHHHHccccccCcceeecccccccchhhhhcccceeeeEEeeechhhHHhhhccCC
Q psy15505 1796 LSSWFTFLLYKFLRECAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLSEEKLIRHAIDFKPMTVYVKEKSLDTIYRATP 1875 (2400)
Q Consensus 1796 ltnW~s~~ly~~l~~~ag~pl~~L~~aik~QvekGPvDaitg~ArytL~e~~Llr~~i~~~~l~l~vKeKild~~yk~~p 1875 (2400)
++.+|-..=.+||++..|..+ +.++...
T Consensus 80 ~~~y~k~~G~~YL~~~L~p~I---------------------------------------------------~~ii~~~- 107 (309)
T cd05136 80 IEEYLKLVGQDYLQDTLGEFI---------------------------------------------------RALYESE- 107 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHH---------------------------------------------------HHHHcCC-
Confidence 999997766778886554332 2222110
Q ss_pred CCCCCCCCCcceEEeeCCCCcEEEecCCCCceeeCceEEEeeccCCCCCCCcEEEEEeeeccccccccCCCccccccccc
Q psy15505 1876 YSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQYNLSILSEKTDKYETLNLSK 1955 (2400)
Q Consensus 1876 ~s~rp~~~~~dlew~~~~~~~~~L~d~D~ts~~~~~w~rlNTl~hY~v~d~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1955 (2400)
.++|--....+
T Consensus 108 ---------~~~EiDP~k~~------------------------------------------------------------ 118 (309)
T cd05136 108 ---------ENCEVDPSKCS------------------------------------------------------------ 118 (309)
T ss_pred ---------CCcccCccccC------------------------------------------------------------
Confidence 12220000000
Q ss_pred ccCCCCCCccCCCCCceeEEeecCCCCCccccCcCCcccchhHHhhhhhccccchhhhhHhHHhhhhccCcCCCCCCcch
Q psy15505 1956 MGRNTSPLNRDHDGMAKEWHLVKHHDSDNQKEGERSNKMVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAI 2035 (2400)
Q Consensus 1956 ~~~~~~~~~~~~~~~~~~~HLvk~~~~~~~~~~~~~~k~i~EiyltrLls~Kgtlq~fvdd~f~~i~~~~~~~~~~P~ai 2035 (2400)
..+ | + ..+..|.++++.++.+|.+..+ .+|..+
T Consensus 119 --------~~~---------l-------------------~--------~n~~~L~~~~~~~~~~I~~S~~---~~P~~l 151 (309)
T cd05136 119 --------ASE---------L-------------------P--------DHQANLRMCCELAWCKIINSHC---VFPAEL 151 (309)
T ss_pred --------chh---------H-------------------H--------HHHHHHHHHHHHHHHHHHHhHH---hCCHHH
Confidence 000 0 0 0013678888888899998875 799999
Q ss_pred hhhhhccHHHHHhcCCCCchhhcccccCCCcceeeeecccCCCeeeeecc---CCCCCcceeeehhhhccccccCCcccC
Q psy15505 2036 KYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLIKNPNFVFDIHK---SNIVDSCLSVVAQTFMDSCSTSDHRLG 2112 (2400)
Q Consensus 2036 Ky~FDflD~~A~~~~i~d~~~~h~WKtN~lpLRFWvn~ikNp~fvfDi~~---s~~vd~~lsviaqtfmdacs~se~~lg 2112 (2400)
+++|.-+=+.+.+.+ ++++...==++.+-|||---.|-+|+- |++-. ++..=..|..||.++...-+...- -|
T Consensus 152 R~i~~~lr~~~~~~~--~~~~~~~~Vg~fiFLRFi~PAIvsP~~-f~l~~~~p~~~~rR~LtlIAKvLQnlAN~~~f-~~ 227 (309)
T cd05136 152 REVFASWRERCEDRG--REDIADRLISASLFLRFLCPAILSPSL-FNLTQEYPSPRTARTLTLIAKVIQNLANFTKF-GG 227 (309)
T ss_pred HHHHHHHHHHHhhhc--cchHHHHHHHHHHHHHHhccccCCchh-cCCCCCCCChHHhhhHHHHHHHHHHHHCCCCC-CC
Confidence 999999988887764 455665566788999999999999997 65543 456777899999988776654321 12
Q ss_pred CCC---CCccccccccchhHHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhhhcccccHHHHHHHHHHHHHhhHHHHHH
Q psy15505 2113 KDS---PSSKLLYAKDIPAYKEWVERYYSDIKSMQAISDQ-DMNAMLAEESRLHNSEFSTNCALYELYTYASKYNEQLTV 2188 (2400)
Q Consensus 2113 kds---psnklLyakdip~yk~~v~~yy~~I~~~p~~s~q-em~~~l~~~s~~~~~~f~~~~al~ely~y~~~y~~~i~~ 2188 (2400)
|+. |.|. =|-+.+..|.+|+.+|.+.|...+. +|..+. ++++ .+.+||.| -.+-++
T Consensus 228 KE~~M~~ln~-----fi~~~~~~~~~fL~~is~v~~~~~~~~~d~y~-dl~~-------el~~lH~l-------l~e~~~ 287 (309)
T cd05136 228 KEEYMEFMND-----FLEREWGRMKDFLLEISNPDTISAPLGFDGYI-DLGK-------ELSVLHSL-------LWEVLA 287 (309)
T ss_pred cchHHHHHHH-----HHHHHHHHHHHHHHHHcCCCCcccccchhhhh-hhHH-------HHHHHHHH-------HHHHHH
Confidence 332 2222 1456788899999999988766433 333332 2221 33344443 334556
Q ss_pred HhhcChhhHhhhHHHHHHHH
Q psy15505 2189 TLEEDEFSQKQRLAYKLEQK 2208 (2400)
Q Consensus 2189 ~L~~d~~~~~~~l~~~l~~v 2208 (2400)
+|..|......-|+.-|++|
T Consensus 288 ~l~~~~~~~~~~~~~~~~~~ 307 (309)
T cd05136 288 QLDQDENDKLGPLPRILNDI 307 (309)
T ss_pred HhCCCccCCCCcchhHHhhc
Confidence 66667666566677766654
No 29
>cd05392 RasGAP_Neurofibromin_like Neurofibromin-like proteins include the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2, the closest homolog of neurofibromin, which is responsible for the human autosomal dominant disease neurofibromatosis type I (NF1). The RasGAP Ira1/2 proteins are negative regulators of the Ras-cAMP signaling pathway and conserved from yeast to human. In yeast Ras proteins are activated by GEFs, and inhibited by two GAPs, Ira1 and Ira2. Ras proteins activate the cAMP/protein kinase A (PKA) pathway, which controls metabolism, stress resistance, growth, and meiosis. Recent studies showed that the kelch proteins Gpb1 and Gpb2 inhibit Ras activity via association with Ira1 and Ira2. Gpb1/2 bind to a conserved C-terminal domain of Ira1/2, and loss of Gpb1/2 results in a destabilization of Ira1 and Ira2, leading to elevated levels of Ras2-GTP and uninhibited cAMP-PKA signaling. Since the Gpb1/2 binding domain on Ira1/2 is conserved in the human neurofibromin prote
Probab=95.57 E-value=0.12 Score=65.08 Aligned_cols=183 Identities=14% Similarity=0.138 Sum_probs=124.9
Q ss_pred hhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCCCCchhhcccccCCCcceeeeecccCCCeee--eeccCC
Q psy15505 2010 LQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLIKNPNFVF--DIHKSN 2087 (2400)
Q Consensus 2010 lq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i~d~~~~h~WKtN~lpLRFWvn~ikNp~fvf--Di~~s~ 2087 (2400)
|.++++.++++|.+..+ .+|..+||++-.+=+.+.+.- |+....==++.+-|||-.-.|-+|+-.- |...++
T Consensus 128 L~~~~~~~l~~I~~s~~---~~P~~lr~i~~~l~~~v~~kf---p~~~~~~Vg~fiFLRfi~PAIvsP~~~~l~~~~~~~ 201 (323)
T cd05392 128 LEKYCQKFIDAIISSLD---RFPPELREICHHIYEVVSEKF---PDSALSAVGSFIFLRFFCPAIVSPESEGIVDTKPSP 201 (323)
T ss_pred HHHHHHHHHHHHHHhHH---hCCHHHHHHHHHHHHHHHHHC---CCchHHHHHHHHHHHHhhhhhCCchhcCCCCCCCCh
Confidence 56667777777777654 799999999999988887752 4433333457889999999999999754 334467
Q ss_pred CCCcceeeehhhhccccccCCcccCCCC---CCccccccccchhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhcc
Q psy15505 2088 IVDSCLSVVAQTFMDSCSTSDHRLGKDS---PSSKLLYAKDIPAYKEWVERYYSDIKSMQAISDQDMNAMLAEESRLHNS 2164 (2400)
Q Consensus 2088 ~vd~~lsviaqtfmdacs~se~~lgkds---psnklLyakdip~yk~~v~~yy~~I~~~p~~s~qem~~~l~~~s~~~~~ 2164 (2400)
.+-.+|..||..+....+...-- +|+. |.|. -|-..++.+.+|+++|.+.|...+..-.+. -.
T Consensus 202 ~~rr~L~~iaKvLQ~lan~~~f~-~ke~~m~~ln~-----fi~~~~~~~~~fl~~i~~~~~~~~~~~~~~--------~~ 267 (323)
T cd05392 202 KARRSLILLAKVLQNIANGVLFS-IKEPFMESLND-----FLKSNSDKIFDFLKEISSDPRNIDIVNHTF--------ED 267 (323)
T ss_pred hhchhHHHHHHHHHHHhCcCcCC-CCchHHHHHHH-----HHHHHHHHHHHHHHHHcCCCCcccchhhcc--------cc
Confidence 88999999999888766544321 2432 4443 455789999999999999887654422211 12
Q ss_pred cccHHHHHHHHHHHHHhhHHHHHHHhhcChhhHh-----hhHHHHHHHHHHhc
Q psy15505 2165 EFSTNCALYELYTYASKYNEQLTVTLEEDEFSQK-----QRLAYKLEQKSNAG 2212 (2400)
Q Consensus 2165 ~f~~~~al~ely~y~~~y~~~i~~~L~~d~~~~~-----~~l~~~l~~v~~~~ 2212 (2400)
..-....+.-|.+.+.++.++|...|..+....+ .+...++..+...+
T Consensus 268 ~~~~~~~i~~lH~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 320 (323)
T cd05392 268 SEIDDTDLLFLHRFLYKHQEKIRKNLLSEKKSKANFHDGRVTFDKFDKLLVLL 320 (323)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhccccchHHHHHHHHHhc
Confidence 3344556666777788888999999887754422 33445555444433
No 30
>PF01437 PSI: Plexin repeat; InterPro: IPR002165 This is a cysteine rich repeat found in several different extracellular receptors. The function of the repeat is unknown. Three copies of the repeat are found in plexin (P70206 from SWISSPROT) []. Two copies of the repeat are found in mahogany protein. A related Caenorhabditis elegans protein (Q19981 from SWISSPROT) contains four copies of the repeat, while the Met receptor contains a single copy of the repeat.; GO: 0016020 membrane; PDB: 3NVQ_B 3NVN_B 3OL2_B 3OKT_A 3AL8_A 3OKW_A 3OKY_B 3AFC_B 1OLZ_B 1SHY_B ....
Probab=95.00 E-value=0.011 Score=54.38 Aligned_cols=49 Identities=33% Similarity=0.925 Sum_probs=36.2
Q ss_pred ecccCCCCccccccCCCcccceecCCCCCccccc-cCCCCC-CCcccCCCCCC
Q psy15505 864 RCRDLANNCGLCLALPEKYGCGWCQSSKRCEIFE-QCDKGL-GTWLNRNHTCP 914 (2400)
Q Consensus 864 nCs~~~~dCs~Cl~ad~~y~C~WC~~~~~C~~~~-~C~~~~-~~w~~~~~~CP 914 (2400)
+|+.. .+|+.|+.+... +|+||...++|+... +|.... ..|.....+||
T Consensus 1 ~C~~~-~sC~~Cl~~~dp-~CgWc~~~~~C~~~~~~c~~~~~~~~~~~~~~CP 51 (51)
T PF01437_consen 1 NCSQY-TSCSSCLSSRDP-YCGWCSSENRCVSGSGQCPRSQQNRWIWSYSQCP 51 (51)
T ss_dssp -GGGG-SSHHHHHHSTCT-TEEEETTTTEEEECCGGSSSTGSTCEEESGCGST
T ss_pred CCcCC-CcHHHHHcCCCc-CccccCCCCcccCCcccCCcccccccccCcCCCc
Confidence 36554 899999988544 999999999999998 897632 24544555676
No 31
>PF01437 PSI: Plexin repeat; InterPro: IPR002165 This is a cysteine rich repeat found in several different extracellular receptors. The function of the repeat is unknown. Three copies of the repeat are found in plexin (P70206 from SWISSPROT) []. Two copies of the repeat are found in mahogany protein. A related Caenorhabditis elegans protein (Q19981 from SWISSPROT) contains four copies of the repeat, while the Met receptor contains a single copy of the repeat.; GO: 0016020 membrane; PDB: 3NVQ_B 3NVN_B 3OL2_B 3OKT_A 3AL8_A 3OKW_A 3OKY_B 3AFC_B 1OLZ_B 1SHY_B ....
Probab=94.75 E-value=0.0049 Score=56.73 Aligned_cols=32 Identities=47% Similarity=1.254 Sum_probs=27.9
Q ss_pred eeeccccCCCCCCCcCccCCCCcCCCCC-CCce
Q psy15505 1089 TLTCWDCLNRKDPYCGWCSLDNKCSLRS-DCQD 1120 (2400)
Q Consensus 1089 ~~~C~~c~~~~dpycgwC~l~~rCs~~~-~cF~ 1120 (2400)
...|.+|+...|||||||...++|+... +|-.
T Consensus 5 ~~sC~~Cl~~~dp~CgWc~~~~~C~~~~~~c~~ 37 (51)
T PF01437_consen 5 YTSCSSCLSSRDPYCGWCSSENRCVSGSGQCPR 37 (51)
T ss_dssp GSSHHHHHHSTCTTEEEETTTTEEEECCGGSSS
T ss_pred CCcHHHHHcCCCcCccccCCCCcccCCcccCCc
Confidence 3558999999999999999999999988 7744
No 32
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=94.40 E-value=0.069 Score=66.76 Aligned_cols=136 Identities=20% Similarity=0.230 Sum_probs=98.6
Q ss_pred cchhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCCCCchhhcccccCCCcceeeeecccCCCeee--eecc
Q psy15505 2008 GTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLIKNPNFVF--DIHK 2085 (2400)
Q Consensus 2008 gtlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i~d~~~~h~WKtN~lpLRFWvn~ikNp~fvf--Di~~ 2085 (2400)
..|..+++.++++|.+..+ .+|..|+|+|.-|=+.+++.--.++++...==++.+-|||-.-.|-+|+-.- |-+.
T Consensus 132 ~~L~~~~~~~~~~I~~S~~---~~P~~lr~i~~~l~~~v~~kFp~~~~~~~~~V~gfiFLRfi~PAIvsP~~f~l~~~~p 208 (315)
T cd05128 132 ENLRYYLDRLFEAITKSSV---SCPTVMCDIFYQLRERVGERFPGDPDVQYLAVSSFLFLRFFAPAILSPKLFHLRPHHA 208 (315)
T ss_pred HHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHCCCCccchHHHHHHHHHHHHHhHHhcChHhcCCCCCCC
Confidence 5578889999999998865 7999999999999998888754444555544567899999999999999533 3333
Q ss_pred CCCCCcceeeehhhhccccccCCcc--cCCCCCCcccccccc-chhHHHHHHHHHHHhhcCCCCC
Q psy15505 2086 SNIVDSCLSVVAQTFMDSCSTSDHR--LGKDSPSSKLLYAKD-IPAYKEWVERYYSDIKSMQAIS 2147 (2400)
Q Consensus 2086 s~~vd~~lsviaqtfmdacs~se~~--lgkdspsnklLyakd-ip~yk~~v~~yy~~I~~~p~~s 2147 (2400)
++.+-..|..||.++-..-...... .+|+. -=+-||..| |-++++.|.+|..+|.+.+...
T Consensus 209 ~~~~rR~L~lIaKvLQnlaN~~~f~~~~~KE~-~M~pl~~n~fi~~~~~~~~~fL~~is~v~~~e 272 (315)
T cd05128 209 DARTSRTLLLLSKAVQTLGNLGSSAGSSFKEQ-WMAPLFKQPTEEQYVSAVKDFLDRISSTEERE 272 (315)
T ss_pred CHHHHHHHHHHHHHHHHHhCcCcccCCCCCCH-HHhccccChHHHHHHHHHHHHHHHHcCCCChh
Confidence 5567788999998877766544332 35553 333334333 4468899999999998765543
No 33
>cd01176 IPT_RBP-Jkappa IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known as the integrase family. Further studies indicated that RBP-J kappa functions as a repressor of transcription, via destabilization of the general transcription factor IID and recruitment of histone deacetylase complexes.
Probab=94.02 E-value=0.29 Score=49.83 Aligned_cols=84 Identities=13% Similarity=0.228 Sum_probs=58.0
Q ss_pred ceeeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEeCCccceeEEecCceEEEEcCCCC----------CccceeEEE
Q psy15505 11 GTLRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASD----------RQRNGKLSM 80 (2400)
Q Consensus 11 ~~~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtVG~~pC~I~~v~~t~I~C~Tpps~----------~~g~~~V~V 80 (2400)
+.|.|.|++=.-|- -.-+|.++|+||..+ .+|-+|+.+-.-..+.++.|.|..|+.+ .+..+||++
T Consensus 4 PvPvV~sl~lnGgg--dvamlEl~GenF~pn--LkVWFG~veaeTmyR~~e~l~CvvPdis~f~~~w~~~~~p~~VPisL 79 (97)
T cd01176 4 PVPVVSSLELNGGG--DVAMLELHGENFTPN--LKVWFGDVEAETMYRCEESLLCVVPDISAFREEWRWVRQPVQVPISL 79 (97)
T ss_pred ccceEeEEEEcCCC--cEEEEEEecCcCCCC--ceEEECCcceEEEEEccceeEEecCCHHHhccCceEecCceEeeEEE
Confidence 45666666532110 116899999999555 8899999987777889999999999864 234567765
Q ss_pred EECCCeeeecCcceEEee
Q psy15505 81 KFDKGTRFFDGSLYEYVE 98 (2400)
Q Consensus 81 ~~dg~~~~~~~~~F~Y~e 98 (2400)
.=+.+-....+.+|+|++
T Consensus 80 VR~DGvIY~T~ltFtYtp 97 (97)
T cd01176 80 VRNDGIIYPTGLTFTYTP 97 (97)
T ss_pred EecCCeEecCCceEEecC
Confidence 444444555666788863
No 34
>cd01176 IPT_RBP-Jkappa IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known as the integrase family. Further studies indicated that RBP-J kappa functions as a repressor of transcription, via destabilization of the general transcription factor IID and recruitment of histone deacetylase complexes.
Probab=93.06 E-value=0.55 Score=47.92 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=52.9
Q ss_pred cEEEEEecCceecCCCcEEEEEeecCCCCCcEEEEECCceeEEEEecCceEEEEcCCCC----------CCceeEeEeee
Q psy15505 1009 PVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASD----------RQRNGKLSESN 1078 (2400)
Q Consensus 1009 P~ItsIsP~~GP~sGGT~VTItGs~L~~gs~v~V~IG~~~C~i~s~s~t~I~C~Tp~~~----------~~~~v~V~~~~ 1078 (2400)
|+|.++.=+-|-- ..+|.|+|+||.. +.+|.||+.+..-..++++.+.|..|+.. .+..++|.+
T Consensus 6 PvV~sl~lnGggd--vamlEl~GenF~p--nLkVWFG~veaeTmyR~~e~l~CvvPdis~f~~~w~~~~~p~~VPisL-- 79 (97)
T cd01176 6 PVVSSLELNGGGD--VAMLELHGENFTP--NLKVWFGDVEAETMYRCEESLLCVVPDISAFREEWRWVRQPVQVPISL-- 79 (97)
T ss_pred ceEeEEEEcCCCc--EEEEEEecCcCCC--CceEEECCcceEEEEEccceeEEecCCHHHhccCceEecCceEeeEEE--
Confidence 6677776442211 2789999999964 58999999998888889999999999863 234566662
Q ss_pred eEEEECCceeee
Q psy15505 1079 TQHSFTELVQTL 1090 (2400)
Q Consensus 1079 v~V~~d~~~~~~ 1090 (2400)
|.-||.-..+
T Consensus 80 --VR~DGvIY~T 89 (97)
T cd01176 80 --VRNDGIIYPT 89 (97)
T ss_pred --EecCCeEecC
Confidence 5666654433
No 35
>smart00423 PSI domain found in Plexins, Semaphorins and Integrins.
Probab=90.93 E-value=0.15 Score=45.96 Aligned_cols=37 Identities=38% Similarity=0.958 Sum_probs=28.7
Q ss_pred CCccccccCCCcccceecCCCCCccccccCCCCCCCcc
Q psy15505 870 NNCGLCLALPEKYGCGWCQSSKRCEIFEQCDKGLGTWL 907 (2400)
Q Consensus 870 ~dCs~Cl~ad~~y~C~WC~~~~~C~~~~~C~~~~~~w~ 907 (2400)
.+|+.|+.+... .|+||...++|+....|+.....|.
T Consensus 5 ~sC~~C~~~~~~-~C~Wc~~~~~C~~~~~c~~~~~~~~ 41 (46)
T smart00423 5 TSCSECLLARDP-YCAWCSSQGRCTSGERCDSSRQNWL 41 (46)
T ss_pred CcHHHHHcCCCC-CCCccCCCCcccCccccCcccccee
Confidence 589999998665 8999998899999888864223444
No 36
>smart00423 PSI domain found in Plexins, Semaphorins and Integrins.
Probab=90.73 E-value=0.11 Score=46.77 Aligned_cols=29 Identities=41% Similarity=1.250 Sum_probs=25.9
Q ss_pred eeccccCCCCCCCcCccCCCCcCCCCCCC
Q psy15505 1090 LTCWDCLNRKDPYCGWCSLDNKCSLRSDC 1118 (2400)
Q Consensus 1090 ~~C~~c~~~~dpycgwC~l~~rCs~~~~c 1118 (2400)
.+|.+|+...||||+||+..++|+....|
T Consensus 5 ~sC~~C~~~~~~~C~Wc~~~~~C~~~~~c 33 (46)
T smart00423 5 TSCSECLLARDPYCAWCSSQGRCTSGERC 33 (46)
T ss_pred CcHHHHHcCCCCCCCccCCCCcccCcccc
Confidence 35999999999999999999999998666
No 37
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
Probab=90.22 E-value=1.4 Score=46.47 Aligned_cols=85 Identities=19% Similarity=0.221 Sum_probs=56.8
Q ss_pred CeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCe----------eeecccceeecccEEEEEeCCCCCCCCc
Q psy15505 916 PEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGI----------TCQPYESLYNRTTQIVCQVDGPGTRGSR 985 (2400)
Q Consensus 916 P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~----------~C~v~~~~y~~st~IvC~tpps~~~~~~ 985 (2400)
|.|...+-.+|+..||..|-+.|.||-. |+ .|.+-.. ...+.++.. -...|+|+|||... ...
T Consensus 2 p~I~r~s~~s~sv~GG~Ev~Ll~~k~~k---Di--kV~F~E~~~dG~~~WE~~a~f~~~~~-hQ~aIvf~tPpY~~-~~I 74 (101)
T cd01178 2 PEIEKKSLNSCSVNGGEELFLTGKNFLK---DS--KVVFQEKGQDGEAQWEAEATIDKEKS-HQNHLVVEVPPYHN-KHV 74 (101)
T ss_pred CeeEEeccCceeecCCCEEEEEehhcCC---CC--EEEEEEeCCCCccceEEEEEeChHhc-eeeeEEEecCCCCC-CCc
Confidence 8899999999999999999999999943 55 5555321 112222222 24679999999752 344
Q ss_pred cccEEEEEc---c-cccccccceEEe
Q psy15505 986 EGPVIVKIE---D-FRGQSKDNYQFV 1007 (2400)
Q Consensus 986 ~G~V~V~V~---~-~~~~S~~~FtY~ 1007 (2400)
..+|.|.+. + .....+..|+|.
T Consensus 75 ~~pV~V~~~l~~~~~~~S~~~~FtY~ 100 (101)
T cd01178 75 AAPVQVQFYVVNGKRKRSQPQTFTYT 100 (101)
T ss_pred CCceEEEEEEEcCCCCcCCCCCcEec
Confidence 556666654 2 223456888884
No 38
>TIGR03437 Soli_cterm Solibacter uncharacterized C-terminal domain. This model describes a protein domain found in 90 proteins of Solibacter usitatus Ellin6076, nearly always as the C-terminal domain of a much larger protein. No homologs to this domain are detected outside of S. usitatus, a member of the Acidobacteria.
Probab=89.46 E-value=3.1 Score=49.71 Aligned_cols=63 Identities=13% Similarity=0.325 Sum_probs=53.6
Q ss_pred cCCCCcEEEEEEecCCCC-------------CcEEEEeCCccceeEEecCceEEEEcCCCCCccceeEEEEECCCe
Q psy15505 24 PRSGGTILHISGSHMNAG-------------SRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSMKFDKGT 86 (2400)
Q Consensus 24 P~aGGT~LTItG~~L~tG-------------S~v~VtVG~~pC~I~~v~~t~I~C~Tpps~~~g~~~V~V~~dg~~ 86 (2400)
|.+-|..+||.|.+|... ..++|+|++++..+..++.++|-+..|..-..+...|.|...+..
T Consensus 1 ~vAPG~~vsIfG~~L~~~t~~~~~~plpt~l~Gv~V~vnG~~APl~yvSp~QIN~qvP~~~~~g~~~v~V~~~g~~ 76 (215)
T TIGR03437 1 PVAPGSIVSIFGTNLAPATLTAAGGPLPTSLGGVSVTVNGVAAPLLYVSPGQINAQVPYEVAPGAATVTVTYNGGA 76 (215)
T ss_pred CcCCCcEEEEEeccCCCccccccCCCCccccCCeEEEECCEEEEEEEeCcceEEEEeCCCcCCCcEEEEEEeCCcc
Confidence 467899999999999744 347899999999999999999999998766678888999888763
No 39
>smart00323 RasGAP GTPase-activator protein for Ras-like GTPases. All alpha-helical domain that accelerates the GTPase activity of Ras, thereby "switching" it into an "off" position. Improved domain limits from structure.
Probab=88.50 E-value=0.33 Score=61.72 Aligned_cols=166 Identities=18% Similarity=0.252 Sum_probs=110.8
Q ss_pred chhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCCCCchhhcccccCCCcceeeeecccCCCe--eeeeccC
Q psy15505 2009 TLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLIKNPNF--VFDIHKS 2086 (2400)
Q Consensus 2009 tlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i~d~~~~h~WKtN~lpLRFWvn~ikNp~f--vfDi~~s 2086 (2400)
.|.++++.++++|.+..+ .+|..+||+|-.+=+.+.++--.+ +....==++.+-|||-.-.|-+|+- +-|.+-+
T Consensus 151 ~L~~~~~~~~~~I~~s~~---~~P~~lr~i~~~l~~~~~~kfp~~-~~~~~~v~~fiFLRfi~PAIvsP~~~~l~~~~~~ 226 (344)
T smart00323 151 NLLQYVERLFDAIINSSD---RLPYGLRDICKQLRQAAEKRFPDA-DVIYKAVSSFVFLRFFCPAIVSPKLFNLVDEHPD 226 (344)
T ss_pred HHHHHHHHHHHHHHHhHH---hCcHHHHHHHHHHHHHHHHHCCCc-ccchhHHHHHHHHHHhhhHhCChHhhCCCCCCCC
Confidence 467788888888888764 799999999999988888873322 4455555688999999999999984 3344556
Q ss_pred CCCCcceeeehhhhccccccCCcccCCCCCCccccccccchhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhcccc
Q psy15505 2087 NIVDSCLSVVAQTFMDSCSTSDHRLGKDSPSSKLLYAKDIPAYKEWVERYYSDIKSMQAISDQDMNAMLAEESRLHNSEF 2166 (2400)
Q Consensus 2087 ~~vd~~lsviaqtfmdacs~se~~lgkdspsnklLyakdip~yk~~v~~yy~~I~~~p~~s~qem~~~l~~~s~~~~~~f 2166 (2400)
+.+-.+|..||+.++..-+.+.. -+|+.--..| -.=|-+.+..+.+|..+|..-|....++.+.. .....
T Consensus 227 ~~~rr~L~liaKvLQ~lan~~~f-~~ke~~m~~l--n~fi~~~~~~~~~fl~~i~~~~~~~~d~~~~~-------~~~~~ 296 (344)
T smart00323 227 PTTRRTLTLIAKVLQNLANLSEF-GSKEPWMEPL--NDFLLSHKDRVKDFLDELSSVPEILVDKVSDS-------TTISG 296 (344)
T ss_pred hhhhhhHHHHHHHHHHHhCCCCC-CCcchHHHHH--HHHHHHHHHHHHHHHHHHcCCCcccccccchh-------hhcch
Confidence 78899999999999888776553 1333211111 13345668888899999988775111111111 11113
Q ss_pred cHHHHHHHHHHHHHhhHHHHHHHhh
Q psy15505 2167 STNCALYELYTYASKYNEQLTVTLE 2191 (2400)
Q Consensus 2167 ~~~~al~ely~y~~~y~~~i~~~L~ 2191 (2400)
+.+.++|. ++.++.++|-..++
T Consensus 297 ~ei~~~h~---ll~~~~~~i~~~~~ 318 (344)
T smart00323 297 RELSLLHS---LLLENGDALKRELN 318 (344)
T ss_pred hhHHHhhH---HHHHHHHHHHhhhc
Confidence 44444444 55677888887666
No 40
>cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa). The IPT domains in these proteins are involved in DNA binding. Most NF-kappaB/Rel proteins form homo- and heterodimers, while NFAT proteins are largely monomeric (with TonEBP being an exception). While the majority of sequence-specific DNA binding elements are found in the N-terminal domain, several are found in the IPT domain in loops adjacent to, and including, the linker region.
Probab=88.44 E-value=2.1 Score=45.42 Aligned_cols=86 Identities=21% Similarity=0.165 Sum_probs=56.3
Q ss_pred CeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCee---------eecccceeecccEEEEEeCCCCCCCCcc
Q psy15505 916 PEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGIT---------CQPYESLYNRTTQIVCQVDGPGTRGSRE 986 (2400)
Q Consensus 916 P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~~---------C~v~~~~y~~st~IvC~tpps~~~~~~~ 986 (2400)
|.|..++-.+|+..||..+.|.|.|+.. .|+ .|.++... -...++.. ....|+|.|||... ....
T Consensus 1 l~I~r~s~~s~~~~GG~ev~Ll~~k~~k--~di--kV~F~e~~~g~~~WE~~~~f~~~dv-~q~aiv~~tP~y~~-~~i~ 74 (101)
T cd00602 1 LPICRVSSLSGSVNGGDEVFLLCDKVNK--PDI--KVWFGEKGPGETVWEAEAMFRQEDV-RQVAIVFKTPPYHN-KWIT 74 (101)
T ss_pred CceEEEeCCeeEcCCCcEEEEEecCCCC--CCC--EEEEEecCCCCCeEEEEEEECHHHc-eEeEEEecCCCcCC-CCcc
Confidence 3577888899999999999999999954 566 78876521 11111111 22458898888652 3345
Q ss_pred ccEEEEEc-----ccccccccceEEe
Q psy15505 987 GPVIVKIE-----DFRGQSKDNYQFV 1007 (2400)
Q Consensus 987 G~V~V~V~-----~~~~~S~~~FtY~ 1007 (2400)
.+|.|.+. +.....+..|+|.
T Consensus 75 ~pV~V~i~L~r~~~~~~S~~~~FtY~ 100 (101)
T cd00602 75 RPVQVPIQLVRPDDRKRSEPLTFTYT 100 (101)
T ss_pred ccEEEEEEEEeCCCCeecCCcCeEEc
Confidence 67777665 2223457888884
No 41
>cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa). The IPT domains in these proteins are involved in DNA binding. Most NF-kappaB/Rel proteins form homo- and heterodimers, while NFAT proteins are largely monomeric (with TonEBP being an exception). While the majority of sequence-specific DNA binding elements are found in the N-terminal domain, several are found in the IPT domain in loops adjacent to, and including, the linker region.
Probab=88.32 E-value=1.9 Score=45.67 Aligned_cols=84 Identities=11% Similarity=0.101 Sum_probs=53.7
Q ss_pred eeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEeCCc--cceeE----EecC-----ceEEEEcCCCCCcc-ceeEEE
Q psy15505 13 LRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFIDDL--PCRIT----SVEP-----EMAHCVTSASDRQR-NGKLSM 80 (2400)
Q Consensus 13 ~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtVG~~--pC~I~----~v~~-----t~I~C~Tpps~~~g-~~~V~V 80 (2400)
+.|.-++-..||..||..+-+.|.+++. .+++|-++.. ...+. .+.. ..|+|.||+..... ..+|.|
T Consensus 1 l~I~r~s~~s~~~~GG~ev~Ll~~k~~k-~dikV~F~e~~~g~~~WE~~~~f~~~dv~q~aiv~~tP~y~~~~i~~pV~V 79 (101)
T cd00602 1 LPICRVSSLSGSVNGGDEVFLLCDKVNK-PDIKVWFGEKGPGETVWEAEAMFRQEDVRQVAIVFKTPPYHNKWITRPVQV 79 (101)
T ss_pred CceEEEeCCeeEcCCCcEEEEEecCCCC-CCCEEEEEecCCCCCeEEEEEEECHHHceEeEEEecCCCcCCCCccccEEE
Confidence 3577788999999999999999999988 6677777542 11111 1111 24889999976432 233333
Q ss_pred EE----C-CCeeeecCcceEEee
Q psy15505 81 KF----D-KGTRFFDGSLYEYVE 98 (2400)
Q Consensus 81 ~~----d-g~~~~~~~~~F~Y~e 98 (2400)
.+ . +.. .+.+..|+|.+
T Consensus 80 ~i~L~r~~~~~-~S~~~~FtY~P 101 (101)
T cd00602 80 PIQLVRPDDRK-RSEPLTFTYTP 101 (101)
T ss_pred EEEEEeCCCCe-ecCCcCeEEcC
Confidence 33 2 332 34566799963
No 42
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
Probab=84.65 E-value=4.9 Score=42.56 Aligned_cols=83 Identities=10% Similarity=0.053 Sum_probs=52.6
Q ss_pred eeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEeC--Ccc-ceeEE---------ecCceEEEEcCCCCCc---ccee
Q psy15505 13 LRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFID--DLP-CRITS---------VEPEMAHCVTSASDRQ---RNGK 77 (2400)
Q Consensus 13 ~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtVG--~~p-C~I~~---------v~~t~I~C~Tpps~~~---g~~~ 77 (2400)
|.|...+-+.||..||-.|-+.|.++..+. +|.+- +.. ..+.+ +....|.|+|||.... ..+.
T Consensus 2 p~I~r~s~~s~sv~GG~Ev~Ll~~k~~kDi--kV~F~E~~~dG~~~WE~~a~f~~~~~hQ~aIvf~tPpY~~~~I~~pV~ 79 (101)
T cd01178 2 PEIEKKSLNSCSVNGGEELFLTGKNFLKDS--KVVFQEKGQDGEAQWEAEATIDKEKSHQNHLVVEVPPYHNKHVAAPVQ 79 (101)
T ss_pred CeeEEeccCceeecCCCEEEEEehhcCCCC--EEEEEEeCCCCccceEEEEEeChHhceeeeEEEecCCCCCCCcCCceE
Confidence 578889999999999999999999998853 44331 111 11111 1134699999998643 3344
Q ss_pred EEEEEC--CCeeeecCcceEEee
Q psy15505 78 LSMKFD--KGTRFFDGSLYEYVE 98 (2400)
Q Consensus 78 V~V~~d--g~~~~~~~~~F~Y~e 98 (2400)
|.+..- +..+ +....|+|.+
T Consensus 80 V~~~l~~~~~~~-S~~~~FtY~P 101 (101)
T cd01178 80 VQFYVVNGKRKR-SQPQTFTYTP 101 (101)
T ss_pred EEEEEEcCCCCc-CCCCCcEecC
Confidence 555441 1222 3555799863
No 43
>PRK00182 tatB sec-independent translocase; Provisional
Probab=77.74 E-value=4.5 Score=45.96 Aligned_cols=76 Identities=12% Similarity=0.263 Sum_probs=49.6
Q ss_pred HHHHHHhhheeeeccchH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccChHhHhhhc
Q psy15505 1617 LFLIFIAFLIAYRRKSTE----NTRVLKNMQEQMDILELRVAAECKEAFAELQTEITDLTGDLTSGGIPFLDYRTYAMMI 1692 (2400)
Q Consensus 1617 l~li~~~~~~~yrrks~~----~~r~~k~~~~qme~lE~~V~~eck~~FaeLqt~m~dl~~dl~~~giPfldy~~y~~~~ 1692 (2400)
|+|++|+++++--.|--+ .-+-+++++..+++....+++|.+.+|.||+..+.++. ++. =++.|.++++.
T Consensus 11 lvIlvIaLlVfGPerLP~~~r~lg~~ir~~R~~~~~~k~el~~Elg~e~~elrk~l~~l~-~~r-----~~~Pk~~i~k~ 84 (160)
T PRK00182 11 LLLLIVGLIVIGPERLPRLIEDVRAALLAARTAINNAKQQLDGDFGEEFDEFRKPLNQIA-SYR-----RMGPKTAITKA 84 (160)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHh-----hcChHHHHHHH
Confidence 334444444443333333 33344556777788888888888888999998887764 333 24569999999
Q ss_pred cCCCCC
Q psy15505 1693 LFPNSE 1698 (2400)
Q Consensus 1693 ~Fp~~~ 1698 (2400)
||.+.+
T Consensus 85 Lld~d~ 90 (160)
T PRK00182 85 LFDGDD 90 (160)
T ss_pred hccCCh
Confidence 997654
No 44
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=75.53 E-value=2.1 Score=48.03 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=14.8
Q ss_pred ceEEeehhhHHH-HHHHHHhhheeeeccch
Q psy15505 1605 TAMYGGIAIITI-LFLIFIAFLIAYRRKST 1633 (2400)
Q Consensus 1605 ~~i~~~~~~~~~-l~li~~~~~~~yrrks~ 1633 (2400)
-+|||++||+.+ |+|+++++++++++|+|
T Consensus 49 nIVIGvVVGVGg~ill~il~lvf~~c~r~k 78 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILALVFIFCIRRK 78 (154)
T ss_pred cEEEEEEecccHHHHHHHHHhheeEEEecc
Confidence 367888777433 33333444444444443
No 45
>KOG0520|consensus
Probab=74.77 E-value=7 Score=54.81 Aligned_cols=73 Identities=8% Similarity=0.106 Sum_probs=60.9
Q ss_pred CceeeEEEEecCCccCCCCcEEEEEEe-cCCCCCcEEEEeCCccceeEEecCceEEEEcCCCCCccceeEEEEEC
Q psy15505 10 DGTLRNQCVRQTKGPRSGGTILHISGS-HMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSMKFD 83 (2400)
Q Consensus 10 ~~~~~ItsIsPt~GP~aGGT~LTItG~-~L~tGS~v~VtVG~~pC~I~~v~~t~I~C~Tpps~~~g~~~V~V~~d 83 (2400)
++.++|+.++|.++-.-||+.+-|+|. .=.++++.++++|+.+=+-.-+.+.-+.|.-||. .+|-|++.|..+
T Consensus 402 ~qlf~I~DfSP~Wsy~~ggvKVlV~G~~~~~~~~~ysc~Fg~~~VPAeliq~GVLrC~~P~h-~~G~V~l~V~c~ 475 (975)
T KOG0520|consen 402 EQLFTITDFSPEWSYLDGGVKVLVTGFPQDETRSNYSCMFGEQRVPAELIQEGVLRCYAPPH-EPGVVNLQVTCR 475 (975)
T ss_pred cceeeeeccCcccccCCCCcEEEEecCccccCCCceEEEeCCccccHHHhhcceeeeecCcc-CCCeEEEEEEec
Confidence 788899999999999999999999995 3345588899999764443445678899999994 789999999988
No 46
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=74.07 E-value=1.4 Score=57.00 Aligned_cols=153 Identities=19% Similarity=0.277 Sum_probs=107.5
Q ss_pred cchhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhc-CCCCchhhcccccCCCcceeeeecccCCCeeeeecc-
Q psy15505 2008 GTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNH-GITDPEVVHTWKSNSLPLRFWVNLIKNPNFVFDIHK- 2085 (2400)
Q Consensus 2008 gtlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~-~i~d~~~~h~WKtN~lpLRFWvn~ikNp~fvfDi~~- 2085 (2400)
..|.++++.++++|.+..+ .+|..+||+|..+=+.+++. .-.++++...==+..+-|||---.|=||+- |++-.
T Consensus 199 ~~L~~~~~~~~~~I~~S~~---~~P~~lR~i~~~lr~~v~~kfpd~~~~~~~~~Vg~FiFLRFicPAIvsP~~-f~L~~~ 274 (395)
T cd05137 199 ERLISLTEEIWKRIANTSN---DLPQEIRHILKYIRAKLEDRYGDFLRTVVYNSISGFLFLRFFCPAILNPKL-FGLLRD 274 (395)
T ss_pred HHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHCCCchhhHHHHHHHHHHHHHHhccccCChhh-cCCCcC
Confidence 4577888999999998875 89999999999998888764 322345555445688999999999999997 77664
Q ss_pred --CCCCCcceeeehhhhccccccCCcccCCC---CCCccccccccchhHHHHHHHHHHHhhcCC--------CCCHHHHH
Q psy15505 2086 --SNIVDSCLSVVAQTFMDSCSTSDHRLGKD---SPSSKLLYAKDIPAYKEWVERYYSDIKSMQ--------AISDQDMN 2152 (2400)
Q Consensus 2086 --s~~vd~~lsviaqtfmdacs~se~~lgkd---spsnklLyakdip~yk~~v~~yy~~I~~~p--------~~s~qem~ 2152 (2400)
++..=..|..||.++...-..+.-. +|+ .|.|. =|-.+++.|.+|+.+|.+.| .+|...+.
T Consensus 275 ~p~~~~rRtLtLIAKvLQnLAN~~~f~-~KE~~M~~lN~-----Fi~~~~~~~~~FL~~is~v~~~~~~~~~~~s~~~~~ 348 (395)
T cd05137 275 HPQPRAQRTLTLIAKVLQNLANLTNFG-KKEPWMEPMNP-----FIEKHRQELKDYIDKICSIKLDFETKILKPSSSTPI 348 (395)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccCCCC-CcchHHHHHHH-----HHHHHHHHHHHHHHHHcCCCcccccccCCccccchh
Confidence 3445578999998887766544321 222 22332 24578888999999998765 34444566
Q ss_pred HHHHHHHhhhcccccHHH
Q psy15505 2153 AMLAEESRLHNSEFSTNC 2170 (2400)
Q Consensus 2153 ~~l~~~s~~~~~~f~~~~ 2170 (2400)
..+..++....++|=++-
T Consensus 349 ~~~~~l~~~~~~~~p~~p 366 (395)
T cd05137 349 TILLRLPPTSLEGFPSLP 366 (395)
T ss_pred hhhccCChhhhhcCCCCh
Confidence 666666666656665555
No 47
>cd05130 RasGAP_Neurofibromin Neurofibromin is the product of the neurofibromatosis type 1 gene (NF1) and shares a region of similarity with catalytic domain of the mammalian p120RasGAP protein and an extended similarity with the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2. Neurofibromin has been shown to function as a GAP (GTPase-activating protein) which inhibits low molecular weight G proteins such as Ras by stimulating their intrinsic GTPase activity. NF1 is a common genetic disorder characterized by various symptoms ranging from predisposition for the development of tumors to learning disability or mental retardation. Loss of neurofibromin activity can be correlated to the increase in Ras-GTP concentration in neurofibromas of NF1 of patients, supporting the notion that unregulated Ras signaling may contribute to their development.
Probab=74.02 E-value=2.2 Score=54.12 Aligned_cols=169 Identities=14% Similarity=0.188 Sum_probs=105.0
Q ss_pred cchhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCCCCchhhcccccCCCcceeeeecccCCCee--eeecc
Q psy15505 2008 GTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLIKNPNFV--FDIHK 2085 (2400)
Q Consensus 2008 gtlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i~d~~~~h~WKtN~lpLRFWvn~ikNp~fv--fDi~~ 2085 (2400)
..|..+++.++.+|.+..+ .+|..++|+|.-+=+.+.++=-.+.+....==++.+-|||---.|-+|+-. -|.+-
T Consensus 135 ~~L~~~~~~fl~~I~~S~~---~~P~~lR~i~~~l~~~v~~kFP~~~~~~~~~Vg~fiFLRfi~PAIvsP~~f~l~~~~p 211 (329)
T cd05130 135 RNLLQLTEKFFHAIINSSS---EFPPQLRSVCHCLYQVVSQRFPNKAQNSIGAVGSAMFLRFINPAIVSPYEAGILDKKP 211 (329)
T ss_pred HHHHHHHHHHHHHHHHhHH---hCCHHHHHHHHHHHHHHHHHCCCcccchHHHHHHHHHHHHhhhhhCCccccCCCCCCC
Confidence 4577888888889998865 799999999999988887753222222211226889999999999999853 23344
Q ss_pred CCCCCcceeeehhhhccccccCCcccCCCCCCccccccccchhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhccc
Q psy15505 2086 SNIVDSCLSVVAQTFMDSCSTSDHRLGKDSPSSKLLYAKDIPAYKEWVERYYSDIKSMQAISDQDMNAMLAEESRLHNSE 2165 (2400)
Q Consensus 2086 s~~vd~~lsviaqtfmdacs~se~~lgkdspsnklLyakdip~yk~~v~~yy~~I~~~p~~s~qem~~~l~~~s~~~~~~ 2165 (2400)
++..-.+|..||..+...-+... .||+.--. -...=|-..++.+.+|+.+|..-++..|+ . .+..-
T Consensus 212 ~~~~rR~L~lIAKvLQnlAN~~~--F~KE~~M~--~lN~fi~~~~~~~~~Fl~~i~~~~~~~d~-~---------~~p~~ 277 (329)
T cd05130 212 PPRIERGLKLMSKILQSIANHVL--FTKEEHMR--PFNDFVKSNFDAARRFFLDIASDCPTSDN-V---------NHSLS 277 (329)
T ss_pred CHHHHhHHHHHHHHHHHHhccCc--cCCcHHHH--HHHHHHHHHHHHHHHHHHHHccCCCCccc-c---------CCCce
Confidence 66777899999999877765432 23332100 01122456677888889988764443332 0 11111
Q ss_pred ccHHHHHHHHHHHHHhhHHHHHHHhhcC
Q psy15505 2166 FSTNCALYELYTYASKYNEQLTVTLEED 2193 (2400)
Q Consensus 2166 f~~~~al~ely~y~~~y~~~i~~~L~~d 2193 (2400)
|-+..-+.-|.+.+.++.|+|-+-|...
T Consensus 278 yis~~ei~~lH~ll~~h~~~i~~~l~s~ 305 (329)
T cd05130 278 FISDGNVLALHRLLWNNQEKIGQYLSSN 305 (329)
T ss_pred eccHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222223333344566677777777654
No 48
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=73.57 E-value=0.99 Score=56.17 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=9.5
Q ss_pred heeeeccchHh-HHHHHHHH
Q psy15505 1625 LIAYRRKSTEN-TRVLKNMQ 1643 (2400)
Q Consensus 1625 ~~~yrrks~~~-~r~~k~~~ 1643 (2400)
++-||||.+.. .-+|.|++
T Consensus 278 ILRYRRKKKmkKKlQYiKLL 297 (299)
T PF02009_consen 278 ILRYRRKKKMKKKLQYIKLL 297 (299)
T ss_pred HHHHHHHhhhhHHHHHHHHh
Confidence 34488865543 33344443
No 49
>KOG0520|consensus
Probab=72.18 E-value=6.9 Score=54.85 Aligned_cols=73 Identities=11% Similarity=0.188 Sum_probs=60.3
Q ss_pred ccceEEeCcEEEEEecCceecCCCcEEEEEeecC-CCCCcEEEEECCceeEEEEecCceEEEEcCCCCCCceeEeEeeee
Q psy15505 1001 KDNYQFVDPVIKSIQPLQGPRSGGTILHISGSHM-NAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSESNT 1079 (2400)
Q Consensus 1001 ~~~FtY~~P~ItsIsP~~GP~sGGT~VTItGs~L-~~gs~v~V~IG~~~C~i~s~s~t~I~C~Tp~~~~~~~v~V~~~~v 1079 (2400)
.+.|+ |+.++|..+-..||+.|-|+|..- .++++-.|+||+.+-...-+.+.-+.|..|| ..+|.|++.
T Consensus 402 ~qlf~-----I~DfSP~Wsy~~ggvKVlV~G~~~~~~~~~ysc~Fg~~~VPAeliq~GVLrC~~P~-h~~G~V~l~---- 471 (975)
T KOG0520|consen 402 EQLFT-----ITDFSPEWSYLDGGVKVLVTGFPQDETRSNYSCMFGEQRVPAELIQEGVLRCYAPP-HEPGVVNLQ---- 471 (975)
T ss_pred cceee-----eeccCcccccCCCCcEEEEecCccccCCCceEEEeCCccccHHHhhcceeeeecCc-cCCCeEEEE----
Confidence 56665 889999999999999999999643 3458899999987666656678899999999 678888888
Q ss_pred EEEEC
Q psy15505 1080 QHSFT 1084 (2400)
Q Consensus 1080 ~V~~d 1084 (2400)
|..+
T Consensus 472 -V~c~ 475 (975)
T KOG0520|consen 472 -VTCR 475 (975)
T ss_pred -EEec
Confidence 7776
No 50
>PF09099 Qn_am_d_aIII: Quinohemoprotein amine dehydrogenase, alpha subunit domain III; InterPro: IPR015183 This domain is predominantly found in the prokaryotic protein quinohemoprotein amine dehydrogenase, adopting an immunoglobulin-like beta-sandwich fold, with seven strands arranged into two beta sheets; the fold is possibly related to the immunoglobulin and/or fibronectin type III superfamilies. The precise function of this domain has not, as yet, been defined []. ; PDB: 1JMZ_A 1JMX_A 1PBY_A 1JJU_A.
Probab=72.10 E-value=14 Score=37.80 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=38.6
Q ss_pred CcEEEEEecCceecCCCcEEEEEeecCCCCCcEEEEECC-c-eeEEEEecCceEEEE--cCCCCCCceeEeE
Q psy15505 1008 DPVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDD-L-PCRITSVEPEMAHCV--TSASDRQRNGKLS 1075 (2400)
Q Consensus 1008 ~P~ItsIsP~~GP~sGGT~VTItGs~L~~gs~v~V~IG~-~-~C~i~s~s~t~I~C~--Tp~~~~~~~v~V~ 1075 (2400)
.|.|.+++|..-..-..|.|||.|++|+ + .+.++. . --.+.+.+.++++-. ..+-..+|...|+
T Consensus 1 ~p~i~aV~P~~lkaG~~t~vti~Gt~L~-~---~v~l~~Gv~v~~v~~~s~~~v~v~V~~aa~a~~G~~~v~ 68 (81)
T PF09099_consen 1 APTILAVSPAGLKAGEETTVTIVGTGLA-G---TVDLGPGVEVLKVVSASPDEVVVRVKAAADAAPGIRTVR 68 (81)
T ss_dssp SSEEEEEESSEEETTCEEEEEEEEES-T-T----EE--TTEEEEEEEEE-STCEEEEEEEECTSSSEEEEEE
T ss_pred CCeEEEECchhccCCCeEEEEEEecCcc-c---ceecCCCeEEEEEEEeCCCEEEEEEEEcCCCCCccEEEE
Confidence 3899999999877766689999999992 2 233432 2 345566778877763 3333334544433
No 51
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=72.06 E-value=3.3 Score=36.69 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=13.6
Q ss_pred eEEeehhhHHHHHHHHHhhhe-eeecc
Q psy15505 1606 AMYGGIAIITILFLIFIAFLI-AYRRK 1631 (2400)
Q Consensus 1606 ~i~~~~~~~~~l~li~~~~~~-~yrrk 1631 (2400)
+.+|+++..++++++++++++ +||||
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred EEEEEEechHHHHHHHHHHhheEEecc
Confidence 335555555555555555444 45554
No 52
>PF15102 TMEM154: TMEM154 protein family
Probab=71.81 E-value=2.5 Score=47.14 Aligned_cols=28 Identities=29% Similarity=0.448 Sum_probs=13.7
Q ss_pred eEEeeh-hhHHHHHHHHHhhheeeeccch
Q psy15505 1606 AMYGGI-AIITILFLIFIAFLIAYRRKST 1633 (2400)
Q Consensus 1606 ~i~~~~-~~~~~l~li~~~~~~~yrrks~ 1633 (2400)
+||.|. +..++|+|+++++++.||||..
T Consensus 59 LmIlIP~VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 59 LMILIPLVLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred EEEeHHHHHHHHHHHHHHHheeEEeeccc
Confidence 344444 2233444444555566666555
No 53
>cd01177 IPT_NFkappaB IPT domain of the transcription factor NFkappaB and related transcription factors. NFkappaB is considered a central regulator of stress responses, activated by different stressful conditions, including physical stress, oxidative stress, and exposure to certain chemicals. NFkappaB blocking cell apoptosis in several cell types, gives it an important role in cell proliferation and differentiation.
Probab=70.06 E-value=25 Score=37.43 Aligned_cols=86 Identities=23% Similarity=0.225 Sum_probs=53.6
Q ss_pred eEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCe-eee--------cccceeecccEEEEEeCCCCCCCCccc
Q psy15505 917 EITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGI-TCQ--------PYESLYNRTTQIVCQVDGPGTRGSREG 987 (2400)
Q Consensus 917 ~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~-~C~--------v~~~~y~~st~IvC~tpps~~~~~~~G 987 (2400)
.|..+.=.+||..||..|-+-+.++.. +|+ .|.+-.. +.. ..++..---..|++.|||... .....
T Consensus 2 ~I~r~s~~sgsv~GG~Ev~LLcdKV~K--~dI--~VrF~e~~~~~~~We~~g~f~~~dVH~Q~AIvfkTPpY~~-~~I~~ 76 (102)
T cd01177 2 KICRLDKTSGSVKGGDEVYLLCDKVQK--EDI--QVRFFEEDEEETVWEAFGDFSQTDVHRQYAIVFRTPPYHD-PDITE 76 (102)
T ss_pred EEEEecCcccccCCCcEEEEEecccCC--CCC--EEEEEEcCCCCCceEEEeeECHHHcccceEEEEeCCCCCC-CcCCC
Confidence 367778889999999999999999853 455 5555321 001 111111112359999999752 34556
Q ss_pred cEEEEEc-----ccccccccceEEe
Q psy15505 988 PVIVKIE-----DFRGQSKDNYQFV 1007 (2400)
Q Consensus 988 ~V~V~V~-----~~~~~S~~~FtY~ 1007 (2400)
+|.|.+. +.....+..|+|.
T Consensus 77 pV~V~iqL~Rpsd~~~Sep~~F~Y~ 101 (102)
T cd01177 77 PVKVKIQLKRPSDGERSESVPFTYV 101 (102)
T ss_pred ceEEEEEEEeCCCCCccCCcceEEc
Confidence 6776664 2334557888885
No 54
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=69.01 E-value=9.8 Score=47.93 Aligned_cols=94 Identities=24% Similarity=0.346 Sum_probs=75.4
Q ss_pred cchhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCCCCchhhcccccCCCcceeeeecccCCCeeeeec---
Q psy15505 2008 GTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLIKNPNFVFDIH--- 2084 (2400)
Q Consensus 2008 gtlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i~d~~~~h~WKtN~lpLRFWvn~ikNp~fvfDi~--- 2084 (2400)
..|++|+|.++++|.+..+ .+|+.++++|--+=+.+++.--.|||+..+==+..+-|||----|-||+-. ++-
T Consensus 131 ~~L~~~~~~i~~~I~~S~~---~~P~~l~~i~~~lr~~v~~rf~~~~~~~~~aVggFiFLRF~cPAIlsP~~f-~L~~~~ 206 (310)
T cd05134 131 ENLRQYVDRIFRVITKSGV---SCPTVMCDIFFSLRESAAKRFQVDPDVRYTAVSSFIFLRFFAPAILSPNLF-QLTPHH 206 (310)
T ss_pred HHHHHHHHHHHHHHHhchh---cCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHhccccCCchhc-ccccCC
Confidence 4589999999999998764 799999999988888887754467888777778899999999999999853 333
Q ss_pred cCCCCCcceeeehhhhccccc
Q psy15505 2085 KSNIVDSCLSVVAQTFMDSCS 2105 (2400)
Q Consensus 2085 ~s~~vd~~lsviaqtfmdacs 2105 (2400)
-++.+-..|..||.++-.--.
T Consensus 207 p~~~~~RtLtLIaKvLQnLAN 227 (310)
T cd05134 207 PDPQTSRTLTLISKTIQTLGS 227 (310)
T ss_pred CChhhhHHHHHHHHHHHHHhc
Confidence 346677889999988766444
No 55
>PRK03100 sec-independent translocase; Provisional
Probab=68.77 E-value=11 Score=42.04 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=41.7
Q ss_pred HHHHHHhhheeeeccchHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccChHhHhhhc
Q psy15505 1617 LFLIFIAFLIAYRRKSTENTRVL----KNMQEQMDILELRVAAECKEAFAELQTEITDLTGDLTSGGIPFLDYRTYAMMI 1692 (2400)
Q Consensus 1617 l~li~~~~~~~yrrks~~~~r~~----k~~~~qme~lE~~V~~eck~~FaeLqt~m~dl~~dl~~~giPfldy~~y~~~~ 1692 (2400)
|+|+||+++++-=.|--++-|.+ ++++.-+.+.+..+++|...+|.||...+.++.+ +. =++-|.++++.
T Consensus 11 lvI~vVaLvv~GPkrLP~~~r~lG~~vr~~R~~~~~~~~~~~~elg~e~~dlrk~l~el~~-lr-----~l~Pr~~i~k~ 84 (136)
T PRK03100 11 LVLVVAGLVILGPERLPGAIRWTARALRQARDYASGATSQLREELGPEFDDLRKPLGELQK-LR-----GMTPRAALTKH 84 (136)
T ss_pred HHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-Hh-----cCChHHHHHHH
Confidence 33444444444333333333333 3444455556666666666567777664444332 21 16778999999
Q ss_pred cCCCCC
Q psy15505 1693 LFPNSE 1698 (2400)
Q Consensus 1693 ~Fp~~~ 1698 (2400)
|+.+.+
T Consensus 85 l~d~d~ 90 (136)
T PRK03100 85 LLDGDD 90 (136)
T ss_pred hhcCCc
Confidence 987654
No 56
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=68.76 E-value=1.6 Score=54.83 Aligned_cols=31 Identities=29% Similarity=0.548 Sum_probs=16.1
Q ss_pred ceEEeehhhHHHHHHHHHh-hheeeeccchHh
Q psy15505 1605 TAMYGGIAIITILFLIFIA-FLIAYRRKSTEN 1635 (2400)
Q Consensus 1605 ~~i~~~~~~~~~l~li~~~-~~~~yrrks~~~ 1635 (2400)
+++++++++.+++++.+|| +++=||||.+..
T Consensus 311 ~IiaSiIAIvvIVLIMvIIYLILRYRRKKKMk 342 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVIIYLILRYRRKKKMK 342 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 3445555544444433444 334489887654
No 57
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=68.65 E-value=9.4 Score=48.64 Aligned_cols=129 Identities=17% Similarity=0.241 Sum_probs=86.6
Q ss_pred cchhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCC--CCchhhcccccCCCcceeeeecccCCCee--eee
Q psy15505 2008 GTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGI--TDPEVVHTWKSNSLPLRFWVNLIKNPNFV--FDI 2083 (2400)
Q Consensus 2008 gtlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i--~d~~~~h~WKtN~lpLRFWvn~ikNp~fv--fDi 2083 (2400)
..|+.|+++++++|.+..+ .+|..|+|+|--+=+.+++.-- .++|+...==++.+-|||-.--|-+|+-. -|-
T Consensus 149 ~~L~~~~~~~~~~I~~S~~---~~P~~lR~i~~~l~~~v~~kFp~~~~~~~~~~~Vg~fiFLRFi~PAIvsP~~f~l~~~ 225 (333)
T cd05135 149 EMLQGYLSSITDAIVGSVS---QCPPVMRLTFKQLHKRVEERFPEAENQDVKYLAISGFLFLRFFAPAILTPKLFQLREQ 225 (333)
T ss_pred HHHHHHHHHHHHHHHhhHH---hCCHHHHHHHHHHHHHHHHHCCCCccchhhHHHHHHHHHHHHhccccCCccccCccCC
Confidence 4578899999999998875 7999999999988777776532 34565444456889999999999999842 233
Q ss_pred ccCCCCCcceeeehhhhccccccCCccc-CCC---CCCccccccccchhHHHHHHHHHHHhhcCC
Q psy15505 2084 HKSNIVDSCLSVVAQTFMDSCSTSDHRL-GKD---SPSSKLLYAKDIPAYKEWVERYYSDIKSMQ 2144 (2400)
Q Consensus 2084 ~~s~~vd~~lsviaqtfmdacs~se~~l-gkd---spsnklLyakdip~yk~~v~~yy~~I~~~p 2144 (2400)
+-++..-..|.-||.++-..-+.+..-- ||+ .|.|.. |-.+++.|.+|..+|.+.+
T Consensus 226 ~~~~~~rR~L~lIAKvLQnlAN~~~~f~~~KE~~M~pln~F-----i~~~~~~v~~FL~~l~~V~ 285 (333)
T cd05135 226 HADPRTSRTLLLLAKAVQSIGNLGQQLGQGKEQWMAPLHPF-----IRQSVARVRDFLDRLIDID 285 (333)
T ss_pred CCCHHHHHHHHHHHHHHHHHHccCCcCCCCCchHHHHHHHH-----HHHHHHHHHHHHHHHcCCC
Confidence 3456666788888887766555222111 222 233331 3356666666666666543
No 58
>PF09099 Qn_am_d_aIII: Quinohemoprotein amine dehydrogenase, alpha subunit domain III; InterPro: IPR015183 This domain is predominantly found in the prokaryotic protein quinohemoprotein amine dehydrogenase, adopting an immunoglobulin-like beta-sandwich fold, with seven strands arranged into two beta sheets; the fold is possibly related to the immunoglobulin and/or fibronectin type III superfamilies. The precise function of this domain has not, as yet, been defined []. ; PDB: 1JMZ_A 1JMX_A 1PBY_A 1JJU_A.
Probab=68.11 E-value=12 Score=38.23 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=40.8
Q ss_pred eeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEeCC-c-cceeEEecCceEEEEcCCCCCccceeEEEEECCC
Q psy15505 13 LRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFIDD-L-PCRITSVEPEMAHCVTSASDRQRNGKLSMKFDKG 85 (2400)
Q Consensus 13 ~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtVG~-~-pC~I~~v~~t~I~C~Tpps~~~g~~~V~V~~dg~ 85 (2400)
|+|.+|+|..--....|.|||.|.+| +.. +.++. . -=.+.+.+.++++=+.-...........|.+++.
T Consensus 2 p~i~aV~P~~lkaG~~t~vti~Gt~L--~~~--v~l~~Gv~v~~v~~~s~~~v~v~V~~aa~a~~G~~~v~vg~~ 72 (81)
T PF09099_consen 2 PTILAVSPAGLKAGEETTVTIVGTGL--AGT--VDLGPGVEVLKVVSASPDEVVVRVKAAADAAPGIRTVRVGSA 72 (81)
T ss_dssp SEEEEEESSEEETTCEEEEEEEEES---TT---EE--TTEEEEEEEEE-STCEEEEEEEECTSSSEEEEEEETTE
T ss_pred CeEEEECchhccCCCeEEEEEEecCc--ccc--eecCCCeEEEEEEEeCCCEEEEEEEEcCCCCCccEEEEeccc
Confidence 68999999999888889999999999 222 33332 1 2234556667766543332233334555555554
No 59
>PTZ00046 rifin; Provisional
Probab=67.78 E-value=1.8 Score=54.71 Aligned_cols=30 Identities=27% Similarity=0.565 Sum_probs=15.5
Q ss_pred eEEeehhhHHHHHHHHHh-hheeeeccchHh
Q psy15505 1606 AMYGGIAIITILFLIFIA-FLIAYRRKSTEN 1635 (2400)
Q Consensus 1606 ~i~~~~~~~~~l~li~~~-~~~~yrrks~~~ 1635 (2400)
++++++++.+++++.+|| +++=||||.+..
T Consensus 317 IiaSiiAIvVIVLIMvIIYLILRYRRKKKMk 347 (358)
T PTZ00046 317 IIASIVAIVVIVLIMVIIYLILRYRRKKKMK 347 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence 445554444444333333 334488887764
No 60
>cd01177 IPT_NFkappaB IPT domain of the transcription factor NFkappaB and related transcription factors. NFkappaB is considered a central regulator of stress responses, activated by different stressful conditions, including physical stress, oxidative stress, and exposure to certain chemicals. NFkappaB blocking cell apoptosis in several cell types, gives it an important role in cell proliferation and differentiation.
Probab=67.58 E-value=34 Score=36.50 Aligned_cols=85 Identities=13% Similarity=0.132 Sum_probs=51.2
Q ss_pred eeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEe--CCc-cceeE---Eec------CceEEEEcCCCCCcc-ceeEE
Q psy15505 13 LRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFI--DDL-PCRIT---SVE------PEMAHCVTSASDRQR-NGKLS 79 (2400)
Q Consensus 13 ~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtV--G~~-pC~I~---~v~------~t~I~C~Tpps~~~g-~~~V~ 79 (2400)
+.|..++=..||..||..|-+-+....-. +++|.+ .+. .+.-. .+. ...|+++|||..... ..+|.
T Consensus 1 L~I~r~s~~sgsv~GG~Ev~LLcdKV~K~-dI~VrF~e~~~~~~~We~~g~f~~~dVH~Q~AIvfkTPpY~~~~I~~pV~ 79 (102)
T cd01177 1 LKICRLDKTSGSVKGGDEVYLLCDKVQKE-DIQVRFFEEDEEETVWEAFGDFSQTDVHRQYAIVFRTPPYHDPDITEPVK 79 (102)
T ss_pred CEEEEecCcccccCCCcEEEEEecccCCC-CCEEEEEEcCCCCCceEEEeeECHHHcccceEEEEeCCCCCCCcCCCceE
Confidence 46888899999999999999999999542 355544 111 11111 111 124999999986432 23444
Q ss_pred EEEC----CCeeeecCcceEEee
Q psy15505 80 MKFD----KGTRFFDGSLYEYVE 98 (2400)
Q Consensus 80 V~~d----g~~~~~~~~~F~Y~e 98 (2400)
|.+- +....+....|+|.+
T Consensus 80 V~iqL~Rpsd~~~Sep~~F~Y~P 102 (102)
T cd01177 80 VKIQLKRPSDGERSESVPFTYVP 102 (102)
T ss_pred EEEEEEeCCCCCccCCcceEEcC
Confidence 3332 222234455798863
No 61
>cd05391 RasGAP_p120GAP p120GAP is a negative regulator of Ras that stimulates hydrolysis of bound GTP to GDP. Once the Ras regulator p120GAP, a member of the GAP protein family, is recruited to the membrane, it is transiently immobilized to interact with Ras-GTP. The down regulation of Ras by p120GAP is a critical step in the regulation of many cellular processes, which is disrupted in approximately 30% of human cancers. p120GAP contains SH2, SH3, PH, calcium- and lipid-binding domains, suggesting its involvement in a complex network of cellular interactions in vivo.
Probab=67.32 E-value=7 Score=49.40 Aligned_cols=181 Identities=18% Similarity=0.206 Sum_probs=112.8
Q ss_pred hhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCCCCchhhcccccCCCcceeeeecccCCCeeeeecc---C
Q psy15505 2010 LQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLIKNPNFVFDIHK---S 2086 (2400)
Q Consensus 2010 lq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i~d~~~~h~WKtN~lpLRFWvn~ikNp~fvfDi~~---s 2086 (2400)
|..++++++++|++..+ .+|..|||+|..+=+.+.++=-.++++...==+..+-|||---.|-||+-. ++-. +
T Consensus 128 L~~~~~~~~~~I~~S~~---~~P~~lr~i~~~l~~~v~~kfp~~~~~~~~~Vg~FiFLRFicPAIvsP~~f-~L~~~~p~ 203 (315)
T cd05391 128 LLNILSELVEKIFMAAE---ILPPTLRYIYGCLQKSVQAKWPTNTTMRTRVVSGFVFLRLICPAILNPRMF-NIISDAPS 203 (315)
T ss_pred HHHHHHHHHHHHHHhHH---hCCHHHHHHHHHHHHHHHHHCCCchhhHHHHHHHHHHHHHhccccCChhhc-CCccCCCC
Confidence 56677777888887764 799999999999988888764334444333445789999999999999864 4332 3
Q ss_pred CCCCcceeeehhhhccccccCCcccCCC---CCCccccccccchhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhc
Q psy15505 2087 NIVDSCLSVVAQTFMDSCSTSDHRLGKD---SPSSKLLYAKDIPAYKEWVERYYSDIKSMQAISDQDMNAMLAEESRLHN 2163 (2400)
Q Consensus 2087 ~~vd~~lsviaqtfmdacs~se~~lgkd---spsnklLyakdip~yk~~v~~yy~~I~~~p~~s~qem~~~l~~~s~~~~ 2163 (2400)
+.+=..|.-||.++-.--...... +|+ .|.|. =|-..+..|.+|..+|.+.|...+ -+.. ...
T Consensus 204 ~~~rR~L~lIaKvLQnLAN~~~f~-~KE~~M~~ln~-----Fi~~~~~~~~~FL~~is~v~d~~~-~~~~-------~~~ 269 (315)
T cd05391 204 PVACRTLMMVAKSVQNLANLVEFG-AKEPYMEGVNP-----FIKSNKHRMIMFLDELGNVPELPD-PTEH-------SRT 269 (315)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcCC-CcchHHHHHHH-----HHHHHHHHHHHHHHHHccCCCccc-cccc-------ccc
Confidence 445567888888776655443321 222 11221 134457778899999988766542 1111 111
Q ss_pred ccccHHHHHHHHHHHHHhhHHHHHHHhhcChhhHhhhHHHHHHHHHHhcc
Q psy15505 2164 SEFSTNCALYELYTYASKYNEQLTVTLEEDEFSQKQRLAYKLEQKSNAGM 2213 (2400)
Q Consensus 2164 ~~f~~~~al~ely~y~~~y~~~i~~~L~~d~~~~~~~l~~~l~~v~~~~~ 2213 (2400)
+.-..+.+|| ++..++.++|-+.=.+-|. ..++-.||..+..++.
T Consensus 270 d~~~~~~~lH---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 314 (315)
T cd05391 270 DLSRDLAALH---EICVAHSDELRTLSNERGA--QQHSLKKLLAITELLQ 314 (315)
T ss_pred chHhHHHHHH---HHHHHhHHHHHHhhccCCC--chhHHHHHHHHHHHhc
Confidence 2222344444 4566677776644333332 4667778888877653
No 62
>PRK01371 sec-independent translocase; Provisional
Probab=65.83 E-value=15 Score=41.08 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=37.4
Q ss_pred HHHHHHHhhheeeeccchHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccChHhHhhh
Q psy15505 1616 ILFLIFIAFLIAYRRKSTENTRVLKNMQE----QMDILELRVAAECKEAFAELQTEITDLTGDLTSGGIPFLDYRTYAMM 1691 (2400)
Q Consensus 1616 ~l~li~~~~~~~yrrks~~~~r~~k~~~~----qme~lE~~V~~eck~~FaeLqt~m~dl~~dl~~~giPfldy~~y~~~ 1691 (2400)
+++|++|+++++--.|--+.-|.+-+... ...+....+++|+..+|.|+ |+.. |+-|+|+++
T Consensus 9 llvIlvVallvfGPeKLP~~ar~lg~~ir~~R~~~~~ak~~i~~Elg~ef~d~---------d~r~-----l~Pr~~vrk 74 (137)
T PRK01371 9 LVVLVVLAVLVFGPDKLPKAARDAGRTLRQLREMANNARNDLRSELGPEFADL---------DLRD-----LNPKTFVRK 74 (137)
T ss_pred HHHHHHHHhheeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhccc---------chhh-----cCHHHHHHH
Confidence 33444444555554555555555554444 44445555555555555544 1221 355999999
Q ss_pred ccCCCCC
Q psy15505 1692 ILFPNSE 1698 (2400)
Q Consensus 1692 ~~Fp~~~ 1698 (2400)
.||-+.+
T Consensus 75 ~l~d~~~ 81 (137)
T PRK01371 75 HLLEDLD 81 (137)
T ss_pred HHhhcch
Confidence 9987643
No 63
>cd05132 RasGAP_GAPA GAPA is an IQGAP-related protein and is predicted to bind to small GTPases, which are yet to be identified. IQGAP proteins are integral components of cytoskeletal regulation. Results from truncated GAPAs indicated that almost the entire region of GAPA homologous to IQGAP is required for cytokinesis in Dictyostelium. More members of the IQGAP family are emerging, and evidence suggests that there are both similarities and differences in their function.
Probab=65.52 E-value=3.7 Score=52.17 Aligned_cols=142 Identities=17% Similarity=0.249 Sum_probs=97.5
Q ss_pred ccchhHHhhhhhccccchhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCCCC-chhhcccccCCCcceeee
Q psy15505 1993 KMVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITD-PEVVHTWKSNSLPLRFWV 2071 (2400)
Q Consensus 1993 k~i~EiyltrLls~Kgtlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i~d-~~~~h~WKtN~lpLRFWv 2071 (2400)
..+.+++-+||-. |..+++.||.+|.+.-+ .+|..|||+|--+=+.+.++=-.. ++.+..==++.|-|||-.
T Consensus 112 ~ev~~~~~~~l~~----L~~~~~~fl~~I~~s~~---~~P~~lR~i~~~l~~~~~~kfp~~~~~~~~~~vg~flflRfi~ 184 (331)
T cd05132 112 PEVKKIIKPRVTQ----LIEICNRFLDTIISSLN---RLPYGIRWICKQIRSLTKRKFPSATDAEICSLIGYFFFLRFIN 184 (331)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhh
Confidence 3567778777744 45566666667776654 799999999999988887653211 223333346889999999
Q ss_pred ecccCCCeee--eeccCCCCCcceeeehhhhccccccCCcccCCC---CCCccccccccchhHHHHHHHHHHHhhcCCCC
Q psy15505 2072 NLIKNPNFVF--DIHKSNIVDSCLSVVAQTFMDSCSTSDHRLGKD---SPSSKLLYAKDIPAYKEWVERYYSDIKSMQAI 2146 (2400)
Q Consensus 2072 n~ikNp~fvf--Di~~s~~vd~~lsviaqtfmdacs~se~~lgkd---spsnklLyakdip~yk~~v~~yy~~I~~~p~~ 2146 (2400)
-.|-+|+-.- |-+.++.....|..||+.+....+..... +|+ .|.|..+ -..++.|.+|+.+|.+.|.+
T Consensus 185 PAIvsP~~fgl~~~~~~~~~rrnL~lIaKvLQ~lan~~~f~-~ke~~m~pLn~fi-----~~~~~~~~~fl~~l~~v~~~ 258 (331)
T cd05132 185 PAIVTPQAYMLVDGEPSDTARKNLTLIAKMLQNLANKPSFG-DKEKWMVPLNPWI-----DENKEKVNNFLEELTEVGDP 258 (331)
T ss_pred HHhcCchhcCCcCCCCCHHHHHHHHHHHHHHHHHhCCCCCC-CCchHHHHHHHHH-----HHHHHHHHHHHHHHhCCCCH
Confidence 9999998432 32336677889999999988777654332 232 3444322 34678899999999887766
Q ss_pred C
Q psy15505 2147 S 2147 (2400)
Q Consensus 2147 s 2147 (2400)
.
T Consensus 259 e 259 (331)
T cd05132 259 E 259 (331)
T ss_pred H
Confidence 4
No 64
>cd04519 RasGAP RasGAP: Ras-GTPase Activating Domain. RasGAP functions as an enhancer of the hydrolysis of GTP that is bound to Ras-GTPases. Proteins having a RasGAP domain include p120GAP, IQGAP, Rab5-activating protein 6, and Neurofibromin. Although the Rho (Ras homolog) GTPases are most closely related to members of the Ras family, RhoGAP and RasGAP show no sequence homology at their amino acid level. RasGTPases function as molecular switches in a myriad of signaling pathways. When bound to GTP they are in the on state and when bound to GDP they are in the off state. The RasGap domain speeds up the hydrolysis of GTP in Ras-like proteins acting as a negative regulator.
Probab=63.00 E-value=4.2 Score=50.61 Aligned_cols=132 Identities=17% Similarity=0.259 Sum_probs=90.4
Q ss_pred chhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCCCCchhhcccccCCCcceeeeecccCCCeee--eeccC
Q psy15505 2009 TLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLIKNPNFVF--DIHKS 2086 (2400)
Q Consensus 2009 tlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i~d~~~~h~WKtN~lpLRFWvn~ikNp~fvf--Di~~s 2086 (2400)
.|.++++.+++.|.+..+ .+|+.+||++-.+=+.+.++.-.+ +....==++-+-|||-.-.|-+|+..- +...+
T Consensus 129 ~l~~~~~~~~~~i~~s~~---~~P~~lr~i~~~i~~~~~~~f~~~-~~~~~~v~~f~flRfi~Pai~sP~~~~~~~~~~~ 204 (318)
T cd04519 129 NLRELLEKFLDAIISSLD---SLPPGLRYICKQLYESVAEKFPEE-DEALSAVGGFLFLRFICPAIVSPELFGIIDDKPS 204 (318)
T ss_pred HHHHHHHHHHHHHHHhHH---hCCHHHHHHHHHHHHHHHHHCCCc-cchHHHHHHHHHHHHhhhHhcCHHhcCCcCCCCC
Confidence 367777777778877654 799999999999988888775433 233333457889999999999998755 33335
Q ss_pred CCCCcceeeehhhhccccccCCcccCCCCCCccccccccchhHHHHHHHHHHHhhcCCCCC
Q psy15505 2087 NIVDSCLSVVAQTFMDSCSTSDHRLGKDSPSSKLLYAKDIPAYKEWVERYYSDIKSMQAIS 2147 (2400)
Q Consensus 2087 ~~vd~~lsviaqtfmdacs~se~~lgkdspsnklLyakdip~yk~~v~~yy~~I~~~p~~s 2147 (2400)
+.+-..|..||+.++-.-+..... +|+.--. .+-.-|-.++..+.+|+.+|...|...
T Consensus 205 ~~~~r~L~~iakvlq~lan~~~~~-~k~~~~~--~ln~~i~~~~~~~~~fl~~i~~~~~~~ 262 (318)
T cd04519 205 PKARRNLTLIAKVLQNLANGKLFS-GKEPYME--PLNDFIKENKDKFKDFLDEISSVPELE 262 (318)
T ss_pred HhhhhHHHHHHHHHHHHhCCCccc-ccCHHHH--HHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 778889999999887766544332 2221111 112335567777888888888876544
No 65
>cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family. Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i.
Probab=60.98 E-value=3 Score=52.95 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=95.3
Q ss_pred cchhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCCCCc--hhhcccccCCCcceeeeecccCCCeee--ee
Q psy15505 2008 GTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDP--EVVHTWKSNSLPLRFWVNLIKNPNFVF--DI 2083 (2400)
Q Consensus 2008 gtlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i~d~--~~~h~WKtN~lpLRFWvn~ikNp~fvf--Di 2083 (2400)
..|+.+++.+|.+|.+..+ .+|..|||+|.-+=+.+.+.--.++ ++...==+..+-|||---.|-||+-.- |-
T Consensus 148 ~~L~~~~~~~l~~I~~S~~---~~P~~iR~i~~~l~~~v~~rFp~~~~~~~~~~~VggFiFLRFicPAIvSP~~f~L~~~ 224 (337)
T cd05395 148 QLLQSYLGELLTAILQSAS---YCPLVIRAVFRQLFLRVQERFPDPQYRKVKFIAVTSFLCLRFFSPAIMSPKLFHLREK 224 (337)
T ss_pred HHHHHHHHHHHHHHHHHHH---hCcHHHHHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHHHHHhccccCCchhcCccCC
Confidence 5678899999999998865 7999999999998888877643222 455556678899999999999998532 33
Q ss_pred ccCCCCCcceeeehhhhccccccCCcc-cCCC---CCCccccccccchhHHHHHHHHHHHhhcCCCCCH
Q psy15505 2084 HKSNIVDSCLSVVAQTFMDSCSTSDHR-LGKD---SPSSKLLYAKDIPAYKEWVERYYSDIKSMQAISD 2148 (2400)
Q Consensus 2084 ~~s~~vd~~lsviaqtfmdacs~se~~-lgkd---spsnklLyakdip~yk~~v~~yy~~I~~~p~~s~ 2148 (2400)
+-++.+-..|..||.++-.--....-. -+|+ .|.|.- |-.+++.|.+|..+|.+.|...+
T Consensus 225 ~p~~~~rR~LtLIAKvLQnLAN~~~f~~~~KE~~M~plN~F-----I~~~~~~~~~FL~~i~~v~~~ee 288 (337)
T cd05395 225 HADARTSRTLLLLAKAVQTVGNMDTLACRAKEPWMVPLQPA-----IQQGITQLKDFITRLVNCEESEE 288 (337)
T ss_pred CCCHHHHhHHHHHHHHHHHHhCcCccCCCCCChHHHHHHHH-----HHHHHHHHHHHHHHHhCCCChhh
Confidence 345667778999998876544432211 1232 344432 45688999999999988876654
No 66
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=60.74 E-value=3.7 Score=39.87 Aligned_cols=18 Identities=17% Similarity=0.457 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15505 1637 RVLKNMQEQMDILELRVA 1654 (2400)
Q Consensus 1637 r~~k~~~~qme~lE~~V~ 1654 (2400)
|++++.+.+++.+|.++.
T Consensus 48 ~~~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 48 RRIRRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666666666666543
No 67
>PRK11677 hypothetical protein; Provisional
Probab=60.22 E-value=14 Score=41.17 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=20.9
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy15505 1631 KSTENTRVLKNMQEQMDILELRVAAECKEAFAELQTEIT 1669 (2400)
Q Consensus 1631 ks~~~~r~~k~~~~qme~lE~~V~~eck~~FaeLqt~m~ 1669 (2400)
+.++-++++++.+.++|.-...|.+-.-+. |||-..|+
T Consensus 30 ~q~~le~eLe~~k~ele~YkqeV~~HFa~T-A~Ll~~L~ 67 (134)
T PRK11677 30 QQQALQYELEKNKAELEEYRQELVSHFARS-AELLDTMA 67 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 445556666667777766665555544322 44444443
No 68
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=59.92 E-value=4.9 Score=50.47 Aligned_cols=93 Identities=20% Similarity=0.286 Sum_probs=73.6
Q ss_pred cchhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCCCCchhhcccccCCCcceeeeecccCCCeeeeecc--
Q psy15505 2008 GTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLIKNPNFVFDIHK-- 2085 (2400)
Q Consensus 2008 gtlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i~d~~~~h~WKtN~lpLRFWvn~ikNp~fvfDi~~-- 2085 (2400)
..|..+++.+|.+|++..+ .+|..++++|--+=+.+++.--.++++...==+..|-|||----|=||+-. ++..
T Consensus 131 ~~L~~~~~~~~~~I~~S~~---~~P~~lr~i~~~lr~~v~~rFp~~~~~~~~aVsgFlFLRF~cPAIlSP~lf-~L~~~~ 206 (313)
T cd05394 131 ENLRYYVDKVFFCIVKSSM---SCPTVMCDIFYSLRHMAVKRFPNDPHVQYSAVSSFVFLRFFAVAVVSPHTF-HLRPHH 206 (313)
T ss_pred HHHHHHHHHHHHHHHhCcc---cCcHHHHHHHHHHHHHHHHHCCChHhhHHHHHHHHHHHHHhhhhhcCcccc-cccCCC
Confidence 4477799999999999875 799999999999999998876556677666677899999999999999853 4433
Q ss_pred -CCCCCcceeeehhhhcccc
Q psy15505 2086 -SNIVDSCLSVVAQTFMDSC 2104 (2400)
Q Consensus 2086 -s~~vd~~lsviaqtfmdac 2104 (2400)
++.+-..|..||.++-.--
T Consensus 207 p~~~~~RtLtLIaKvLQnLA 226 (313)
T cd05394 207 PDAQTSRTLTLISKTIQTLG 226 (313)
T ss_pred CChhhhHHHHHHHHHHHHHh
Confidence 3455678888998765543
No 69
>cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family. Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i.
Probab=59.72 E-value=16 Score=46.63 Aligned_cols=87 Identities=20% Similarity=0.340 Sum_probs=70.2
Q ss_pred HHHHhhccCCCCCcccchhhHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhHHhh
Q psy15505 1732 LFIRTLESNRYFSMRDRVNVASLIMVTLQN--ILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWFTFLLYKFLR 1809 (2400)
Q Consensus 1732 ~fi~tlE~q~~fs~rdr~~~aSLl~v~l~~--il~~Ll~~li~~~~~~~~~pkl~lRrtEsvvEkmltnW~s~~ly~~l~ 1809 (2400)
.+|..||+- -+.++|.-+|+.|.-.+++ .+..+|..||+.-++.-.++..+||. .|+|=||++..|-.-=.+||+
T Consensus 23 ~~~~~l~~~--~~~~~~eela~~Lv~if~~~g~~~~fL~~l~~~Ev~~~~~~~tLFR~-NSlaTK~m~~y~k~~G~~YL~ 99 (337)
T cd05395 23 DLIMLIDET--TTAESRQDVANNLVKLFLGQGLVKEFLDLLFKLELDKTTEPNTLFRS-NSLASKSMESFLKVAGMQYLH 99 (337)
T ss_pred hHHHHHHhh--cChhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhCCCHhHHhhc-CcHHHHHHHHHHHHHHHHHHH
Confidence 377778754 4667777899999888888 99999999999988665678877765 699999999999977778999
Q ss_pred hhcCchhHHHHH
Q psy15505 1810 ECAGEPLYLLFR 1821 (2400)
Q Consensus 1810 ~~ag~pl~~L~~ 1821 (2400)
+..|..+=.++.
T Consensus 100 ~~L~p~I~~I~~ 111 (337)
T cd05395 100 RVLGPIINRVFE 111 (337)
T ss_pred HHHHHHHHHHHc
Confidence 999876666554
No 70
>cd05131 RasGAP_IQGAP2 IQGAP2 is a member of the IQGAP family that contains a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeat, a single WW domain, four IQ motifs which mediate interactions with calmodulin, and a Ras-GTPase-activating protein (GAP)-related domain that binds Rho family GTPases. IQGAP2 and IQGAP3 play important roles in the regulation of the cytoskeleton for axon outgrowth in hippocampal neurons and are thought to stay in a common regulatory pathway. The results of RNA interference studies indicated that IQGAP3 partially compensates functions of IQGAP2, but has lesser ability than IQGAP2 to promote axon outgrowth in hippocampal neuron. Morevover, IQGAP2 is required for the cadherin-mediated cell-to-cell adhesion in Xenopus laevis embryos.
Probab=57.66 E-value=9.5 Score=48.75 Aligned_cols=140 Identities=14% Similarity=0.151 Sum_probs=94.0
Q ss_pred cchhHHhhhhhccccchhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCC-CCchhhcccccCCCcceeeee
Q psy15505 1994 MVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGI-TDPEVVHTWKSNSLPLRFWVN 2072 (2400)
Q Consensus 1994 ~i~EiyltrLls~Kgtlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i-~d~~~~h~WKtN~lpLRFWvn 2072 (2400)
.++++|-.||-. |..+++.||++|.+..+ .+|..|+|++--+=+.+.+.-. ..++.+.+==.+-+-|||-.-
T Consensus 114 ev~~~~~~~l~~----L~~~~~~fl~~I~~sv~---~~P~~lR~ick~i~~~~~~kFP~~~~~~~~~~VG~fiflRfi~P 186 (339)
T cd05131 114 EVRAKLESSIQV----LRSVTDKVLGSIMSSLD---LIPYGMRYIAKVLKNSLHEKFPDATEDELLKIVGNLLYYRYMNP 186 (339)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHccc
Confidence 477888888855 55556666667766654 7999999999888777766532 222333344667888999988
Q ss_pred cccCCCeeeeecc------CCCCCcceeeehhhhccccccCCcccC-C---CCCCccccccccchhHHHHHHHHHHHhhc
Q psy15505 2073 LIKNPNFVFDIHK------SNIVDSCLSVVAQTFMDSCSTSDHRLG-K---DSPSSKLLYAKDIPAYKEWVERYYSDIKS 2142 (2400)
Q Consensus 2073 ~ikNp~fvfDi~~------s~~vd~~lsviaqtfmdacs~se~~lg-k---dspsnklLyakdip~yk~~v~~yy~~I~~ 2142 (2400)
.|-.|+-.-.+.. ++..-..|.-||..++...+... .| | -.|.|.- |-..+..+.+|..+|-+
T Consensus 187 AIvsPe~f~ii~~~~~~~~~~~~rrnL~~iaKvLq~lan~~~--F~~~e~~m~pLN~f-----i~~~~~~~~~fl~~l~~ 259 (339)
T cd05131 187 AIVAPDGFDIIDMTAGGQIHSDQRRNLGSVAKVLQHAASNKL--FEGENDHLSSMNSY-----LSQTYQKFRKFFQAACD 259 (339)
T ss_pred hhcCchhcCccccccCCCCCHHHHhhHHHHHHHHHHHHCCCC--CCCcChHHHhHHHH-----HHHHHHHHHHHHHHHhc
Confidence 8988886554443 34456689999999988774321 11 1 1233321 33467888999999988
Q ss_pred CCCCC
Q psy15505 2143 MQAIS 2147 (2400)
Q Consensus 2143 ~p~~s 2147 (2400)
.|...
T Consensus 260 V~d~e 264 (339)
T cd05131 260 VPEPE 264 (339)
T ss_pred CCCHH
Confidence 76654
No 71
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=57.20 E-value=5.1 Score=47.26 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=17.1
Q ss_pred ceEEeehhhHHHHHHHHHhhheee
Q psy15505 1605 TAMYGGIAIITILFLIFIAFLIAY 1628 (2400)
Q Consensus 1605 ~~i~~~~~~~~~l~li~~~~~~~y 1628 (2400)
.++|||++|++.++|+|++++++.
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred eeeeeeecchhhhHHHHHHHHHHH
Confidence 478888888877777766655553
No 72
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=57.17 E-value=6.3 Score=33.89 Aligned_cols=20 Identities=55% Similarity=0.811 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHH---hhhccccc
Q psy15505 1651 LRVAAECKEAFA---ELQTEITD 1670 (2400)
Q Consensus 1651 ~~V~~eck~~Fa---eLqt~m~d 1670 (2400)
.+||+|||.-|. =||||++|
T Consensus 11 ~kvr~eckrrfgktlllqtei~e 33 (40)
T PF13043_consen 11 QKVRAECKRRFGKTLLLQTEIKE 33 (40)
T ss_pred HHHHHHHHHHhchhhhhhhHhhH
Confidence 369999999995 48888764
No 73
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=56.54 E-value=7.1 Score=45.15 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCC
Q psy15505 1639 LKNMQEQMDILELRVAAECKEAFAELQTEITDLTGDLTSGG 1679 (2400)
Q Consensus 1639 ~k~~~~qme~lE~~V~~eck~~FaeLqt~m~dl~~dl~~~g 1679 (2400)
++.++.||.+||+++..--||- =-+|||.+|-.|++..|
T Consensus 75 L~~lr~Ql~emee~~~~llrQL--Ps~tEmp~Ll~dv~q~G 113 (211)
T COG3167 75 LEALRAQLAEMEERFDILLRQL--PSDTEMPNLLADVNQAG 113 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHhC--CcccchhHHHHHHHHhh
Confidence 3445667777776655444431 12689999999987655
No 74
>cd05127 RasGAP_IQGAP_related This family represents IQ motif containing GTPase activating protein (IQGAP) which associated with the Ras GTP-binding protein. A primary function of IQGAP proteins is to modulate cytoskeletal architecture. There are three known IQGAP family members: IQGAP1, IQGAP2 and IQGAP3. Human IQGAP1 and IQGAP2 share 62% indentity. IQGAPs are multi-domain molecules having a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeats, a single WW domain, four IQ motifs that mediate interactions with calmodulin, and a RasGAP related domain that binds active Rho family GTPases. IQGAP is an essential regulator of cytoskeletal function. IQGAP1 negatively regulates Ras family GTPases by stimulating their intrinsic GTPase activity, the protein actually lacks GAP activity. Both IQGAP1 and IQGAP2 specifically bind to Cdc42 and Rac1, but not to RhoA. Despite of their similarities to part of the sequence of RasGAP, neither IQGAP1 nor IQGAP2 interacts with Ras. IQGA
Probab=54.37 E-value=7.2 Score=49.46 Aligned_cols=142 Identities=17% Similarity=0.270 Sum_probs=99.3
Q ss_pred cchhHHhhhhhccccchhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCCC-CchhhcccccCCCcceeeee
Q psy15505 1994 MVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGIT-DPEVVHTWKSNSLPLRFWVN 2072 (2400)
Q Consensus 1994 ~i~EiyltrLls~Kgtlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i~-d~~~~h~WKtN~lpLRFWvn 2072 (2400)
.+++++-.++-. |..+++.|+++|.+.-+ .+|..|+|++-.+=+.+.++=-. +++.+..==++.|-|||---
T Consensus 112 ~v~~~~~~nl~~----L~~~~~~fl~~I~~s~~---~~P~~lR~i~~~l~~~~~~kfp~~~~~~~~~~vg~flflRfi~P 184 (325)
T cd05127 112 EVRNIFIENLQS----LRELTEQFLDAIISSLD---KIPYGIRYICKQIYEALQRKFPEATEDEILKVIGNFLYYRFINP 184 (325)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 466677777744 66666666666666653 78999999999988887776322 22334444578899999999
Q ss_pred cccCCCee--eeeccCCCCCcceeeehhhhccccccCCcccCCCC---CCccccccccchhHHHHHHHHHHHhhcCCCCC
Q psy15505 2073 LIKNPNFV--FDIHKSNIVDSCLSVVAQTFMDSCSTSDHRLGKDS---PSSKLLYAKDIPAYKEWVERYYSDIKSMQAIS 2147 (2400)
Q Consensus 2073 ~ikNp~fv--fDi~~s~~vd~~lsviaqtfmdacs~se~~lgkds---psnklLyakdip~yk~~v~~yy~~I~~~p~~s 2147 (2400)
.|-+|+-. -|...++..-..|.-||+.+...-+...-- +|+. |.|.. |-..+..+.+|..+|.+.|...
T Consensus 185 AIvsP~~~gl~~~~~~~~~rrnL~~iaKvLq~lan~~~f~-~ke~~m~~LN~f-----i~~~~~~~~~fl~~l~~v~~~e 258 (325)
T cd05127 185 AIVSPENFGIVDGSPTPDQRRNLGEVAKVLQQAASNKPFG-GENGYLSPLNDY-----ISESKPRFRDFLKELIDVPDPE 258 (325)
T ss_pred HhCCchhcCCcCCCCCHHHHhhHHHHHHHHHHHHCCCCCC-CCChhhhhHHHH-----HHHHHHHHHHHHHHHcCCCCHH
Confidence 99999853 233446678889999999999888765432 3442 44433 2345777899999998887665
Q ss_pred H
Q psy15505 2148 D 2148 (2400)
Q Consensus 2148 ~ 2148 (2400)
+
T Consensus 259 ~ 259 (325)
T cd05127 259 E 259 (325)
T ss_pred H
Confidence 3
No 75
>KOG2059|consensus
Probab=52.02 E-value=7.1 Score=52.54 Aligned_cols=89 Identities=22% Similarity=0.321 Sum_probs=74.5
Q ss_pred ccccchhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCCCCchhhcccccCCCcceeeeecccCCCeeeeec
Q psy15505 2005 ATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLIKNPNFVFDIH 2084 (2400)
Q Consensus 2005 s~Kgtlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i~d~~~~h~WKtN~lpLRFWvn~ikNp~fvfDi~ 2084 (2400)
..+++|+.|||.||++|-.... ..|..++-.|-=|=+.|.+|=-.||+|--+==|--+.|||+.--|=+|. +||+.
T Consensus 411 ~n~~nLr~y~~~lf~ait~S~~---~CP~vm~~~F~~Lr~~v~erFp~~~~V~y~AVSsFvfLRFFApAIlsPk-lF~Lr 486 (800)
T KOG2059|consen 411 TNLENLRVYVGRLFEAITKSST---RCPTVMCQIFYDLRERVGERFPSHPDVQYLAVSSFVFLRFFAPAILSPK-LFHLR 486 (800)
T ss_pred hhHHHHHHHHHHHHHHHHhccc---cChHHHHHHHHHHHHHHHhhCCCCCCCceEeeehhHHHHHhhHhhcCcc-ccccc
Confidence 3468999999999999998875 7999999999999999999977899999999999999999999999997 68886
Q ss_pred cCCCCC----cceeeehh
Q psy15505 2085 KSNIVD----SCLSVVAQ 2098 (2400)
Q Consensus 2085 ~s~~vd----~~lsviaq 2098 (2400)
. ...| .-|-.||.
T Consensus 487 ~-~h~DaqTSRTLlLlsK 503 (800)
T KOG2059|consen 487 P-HHPDAQTSRTLLLLSK 503 (800)
T ss_pred c-cCCchhhHHHHHHHHH
Confidence 5 3344 34445554
No 76
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=50.65 E-value=12 Score=38.68 Aligned_cols=40 Identities=23% Similarity=0.383 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC
Q psy15505 1636 TRVLKNMQEQMDILELRVAAECKEAFAELQTEITDLTGDLT 1676 (2400)
Q Consensus 1636 ~r~~k~~~~qme~lE~~V~~eck~~FaeLqt~m~dl~~dl~ 1676 (2400)
.+.++++...++.||.++..--+|. .++..+..++.+|++
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~-~~ll~~~n~l~~dv~ 64 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEI-NDLLHNTNELLEDVN 64 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3445666666666666654333332 555555555655544
No 77
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=49.85 E-value=30 Score=43.80 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=57.3
Q ss_pred ccchhhHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhHHhhhhcCchhHHHHH
Q psy15505 1746 RDRVNVASLIMVTLQN--ILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWFTFLLYKFLRECAGEPLYLLFR 1821 (2400)
Q Consensus 1746 rdr~~~aSLl~v~l~~--il~~Ll~~li~~~~~~~~~pkl~lRrtEsvvEkmltnW~s~~ly~~l~~~ag~pl~~L~~ 1821 (2400)
|||.-+|.=|.=.|.+ -+..+|..||++-++.-.+|..+||+ .|+|=||++.+|=.-=++||++..|..+=.++.
T Consensus 32 ~~~~~~a~~Lvrlf~~~~~~~~fl~~li~~Ev~~t~~~~tLFRg-NSlaTK~m~~y~k~~G~~YL~~tL~pvI~~i~~ 108 (313)
T cd05394 32 RDKYDAVLPLVRLLLHHQKLVPFVAAVAELDLKDTQEANTIFRG-NSLATRCLDEMMKIVGKHYLKVTLKPVLDEICD 108 (313)
T ss_pred hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCHhhHhhc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455555444444443 44588888888888665688898887 599999999999888889999999988877765
No 78
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=48.83 E-value=25 Score=44.34 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=15.0
Q ss_pred eEEeehhhHHHHHHH--HHhhheeeeccchH
Q psy15505 1606 AMYGGIAIITILFLI--FIAFLIAYRRKSTE 1634 (2400)
Q Consensus 1606 ~i~~~~~~~~~l~li--~~~~~~~yrrks~~ 1634 (2400)
.++.|+||++|..|| +++..++.|||++.
T Consensus 271 ~~vPIaVG~~La~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred chHHHHHHHHHHHHHHHHHHhheeEeccccc
Confidence 445555555544333 33344566666654
No 79
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=48.81 E-value=12 Score=37.72 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy15505 1635 NTRVLKNMQEQMDILELRVA 1654 (2400)
Q Consensus 1635 ~~r~~k~~~~qme~lE~~V~ 1654 (2400)
.++.++.+-.+++.||.||.
T Consensus 40 d~~~L~~L~~~a~rm~eRI~ 59 (75)
T PF06667_consen 40 DEQRLQELYEQAERMEERIE 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777777764
No 80
>KOG2297|consensus
Probab=48.26 E-value=45 Score=41.61 Aligned_cols=119 Identities=18% Similarity=0.265 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhhhcccccccccCCCCC--CCccChHhHhhhccCCCCCCCccc---ccCC---------ch--hhhHHHH
Q psy15505 1653 VAAECKEAFAELQTEITDLTGDLTSGG--IPFLDYRTYAMMILFPNSEHHAVL---QFER---------PE--LLHKEKG 1716 (2400)
Q Consensus 1653 V~~eck~~FaeLqt~m~dl~~dl~~~g--iPfldy~~y~~~~~Fp~~~~~p~~---~~~~---------~~--~~~~~~~ 1716 (2400)
.+|-.-++..+.-.|++++..-|+.+| .-|.+|.++.--+||.|....|-- .+-+ .+ +.++...
T Consensus 31 f~da~vq~~~~~~gdle~vak~ldssg~~l~~~rYgd~~fdil~~gg~~~pg~~~sddge~~t~~cvfda~e~~E~i~~~ 110 (412)
T KOG2297|consen 31 FRDAVVQGLEDNAGDLELVAKSLDSSGNDLDYRRYGDILFDILFAGGRLQPGGVKSDDGERHTSYCVFDAEEKREAIRNS 110 (412)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHhccccccHHHHHHHHHHHHHHhcccCCCCccccccCccCceeEeecCchHHHHHHH
Confidence 355555677788888888888888774 778888888888888654333311 1111 11 4555556
Q ss_pred HHHHHhhccCchhHhHHH-----HhhccCCCCCcccchhhHHHHHHHHHH------HHHHHHHHHH
Q psy15505 1717 LRLFGQLIQNKTFLLLFI-----RTLESNRYFSMRDRVNVASLIMVTLQN------ILKTLLAELI 1771 (2400)
Q Consensus 1717 l~~f~~ll~~k~Fl~~fi-----~tlE~q~~fs~rdr~~~aSLl~v~l~~------il~~Ll~~li 1771 (2400)
..-|-+||..+.||..-. +-|-.=+-|+.-+|-.+|-|-.++|.. |+..|+.|-+
T Consensus 111 ~qvf~KliRRykyLeK~fE~e~~k~Llflk~F~e~Er~KLA~~Tal~l~nGt~~~tvl~~L~~d~L 176 (412)
T KOG2297|consen 111 VQVFQKLIRRYKYLEKNFENEMRKFLLFLKLFEENERKKLAMLTALLLSNGTLPATVLQSLLNDNL 176 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhH
Confidence 677889999999987532 233344789999999999777776665 8888887644
No 81
>KOG2347|consensus
Probab=47.66 E-value=11 Score=51.80 Aligned_cols=84 Identities=25% Similarity=0.305 Sum_probs=62.4
Q ss_pred CCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCeeeecccceeecccEEEEEeCCCCCCCCccccEEEEEc
Q psy15505 915 NPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVCQVDGPGTRGSREGPVIVKIE 994 (2400)
Q Consensus 915 ~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~~C~v~~~~y~~st~IvC~tpps~~~~~~~G~V~V~V~ 994 (2400)
+|+++..+|..|+. ||.++|.|.++|.+.+|+ ...++.|.+|..- ....+.+.+.|.++++. ...|.+.+.-.
T Consensus 12 ~p~vtg~s~~e~~p--~t~~~ir~e~l~~~~sd~-~~l~i~g~D~lls-~~~~s~~~~~~~~g~a~---~~~G~~r~~~~ 84 (934)
T KOG2347|consen 12 QPRVTGLSPNEGGP--GTAVTIRKEFLGNDESDV-IGLSICGGDELLS-AERKSPNGIIARVGLAK---REKGDIRVTTL 84 (934)
T ss_pred CccccCCCCCCCCC--CcceeecCCccCcchhhH-hhhhhcccchhhh-hhcCCCCcccccccccc---CCCCceEEeec
Confidence 59999999999887 799999999999666665 4677788888753 23455678888888764 45678777765
Q ss_pred -ccccccccceE
Q psy15505 995 -DFRGQSKDNYQ 1005 (2400)
Q Consensus 995 -~~~~~S~~~Ft 1005 (2400)
+..+.++..|.
T Consensus 85 ~~~~g~s~~~f~ 96 (934)
T KOG2347|consen 85 SGGKGTSTVCFR 96 (934)
T ss_pred cCccccCchhhh
Confidence 44466666663
No 82
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=47.59 E-value=15 Score=38.26 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhhheee--eccchHhHHHHHHHH
Q psy15505 1613 IITILFLIFIAFLIAY--RRKSTENTRVLKNMQ 1643 (2400)
Q Consensus 1613 ~~~~l~li~~~~~~~y--rrks~~~~r~~k~~~ 1643 (2400)
|+++|+||||+++++. |+|..+++++++|-.
T Consensus 49 GG~iLilIii~Lv~CC~~K~K~~~~r~~~~reL 81 (98)
T PF07204_consen 49 GGLILILIIIALVCCCRAKHKTSAARNTFHREL 81 (98)
T ss_pred chhhhHHHHHHHHHHhhhhhhhHhhhhHHHHHH
Confidence 3444444445444443 445456655555533
No 83
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=47.56 E-value=6.9 Score=49.81 Aligned_cols=80 Identities=19% Similarity=0.213 Sum_probs=62.7
Q ss_pred hHHHHhhccCCCCCcccchhhHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhHHh
Q psy15505 1731 LLFIRTLESNRYFSMRDRVNVASLIMVTLQN--ILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWFTFLLYKFL 1808 (2400)
Q Consensus 1731 ~~fi~tlE~q~~fs~rdr~~~aSLl~v~l~~--il~~Ll~~li~~~~~~~~~pkl~lRrtEsvvEkmltnW~s~~ly~~l 1808 (2400)
.+..+.||+.-. .++|.-+|.-|+-.|.+ .+..||..||++-++.-.++..+||+ .|++-||++..|=.-=.+||
T Consensus 23 ~~~~~~L~ev~~--~~~~~~~a~~LV~~f~~~~~~~~ll~~li~~Ev~~~~~~~tlfR~-NSlaTK~m~~y~k~~G~~YL 99 (333)
T cd05135 23 SSALALLEEVTT--VESRQDVAMKLVKIFLGQGLAVPFLDYLNTREVQRTTDPNTLFRS-NSLASKSMEQFMKVVGMPHL 99 (333)
T ss_pred hHHHHHHHhhcC--hHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCHhHHhhc-CcHHHHHHHHHHHHHhHHHH
Confidence 345578887765 56666688888888888 88999999999999766678887766 59999999998887666788
Q ss_pred hhhcC
Q psy15505 1809 RECAG 1813 (2400)
Q Consensus 1809 ~~~ag 1813 (2400)
++..|
T Consensus 100 ~~~L~ 104 (333)
T cd05135 100 HEPLL 104 (333)
T ss_pred HHHHH
Confidence 86554
No 84
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.64 E-value=17 Score=39.04 Aligned_cols=40 Identities=20% Similarity=0.475 Sum_probs=29.1
Q ss_pred HHHHHH-------HHHHHHHHHHHHHH-HHHHHHhhhcccccccccCC
Q psy15505 1637 RVLKNM-------QEQMDILELRVAAE-CKEAFAELQTEITDLTGDLT 1676 (2400)
Q Consensus 1637 r~~k~~-------~~qme~lE~~V~~e-ck~~FaeLqt~m~dl~~dl~ 1676 (2400)
.+.+++ ..+|+.||.+|+.- -++.+++|+.+|+++..++.
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~ 82 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELK 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHH
Confidence 445666 66666666666654 35789999999999988765
No 85
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=41.34 E-value=7 Score=34.26 Aligned_cols=11 Identities=9% Similarity=0.220 Sum_probs=4.3
Q ss_pred EEeehhhHHHH
Q psy15505 1607 MYGGIAIITIL 1617 (2400)
Q Consensus 1607 i~~~~~~~~~l 1617 (2400)
|+|+++|.+++
T Consensus 9 Iv~V~vg~~ii 19 (38)
T PF02439_consen 9 IVAVVVGMAII 19 (38)
T ss_pred HHHHHHHHHHH
Confidence 33444443333
No 86
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=40.85 E-value=8.9 Score=42.08 Aligned_cols=9 Identities=33% Similarity=0.135 Sum_probs=4.4
Q ss_pred ceEEeehhh
Q psy15505 1605 TAMYGGIAI 1613 (2400)
Q Consensus 1605 ~~i~~~~~~ 1613 (2400)
++|++|++|
T Consensus 64 ~~i~~Ii~g 72 (122)
T PF01102_consen 64 PAIIGIIFG 72 (122)
T ss_dssp TCHHHHHHH
T ss_pred cceeehhHH
Confidence 455555444
No 87
>KOG0010|consensus
Probab=40.82 E-value=18 Score=47.55 Aligned_cols=51 Identities=35% Similarity=0.472 Sum_probs=40.2
Q ss_pred echhhHHhhhccCCCCCCCCCCCcceEEeeCCCCcEEEecCCCCceeeCceEEEeeccCCCCCCCcEEEEEeeeccc
Q psy15505 1862 VKEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQYNL 1938 (2400)
Q Consensus 1862 vKeKild~~yk~~p~s~rp~~~~~dlew~~~~~~~~~L~d~D~ts~~~~~w~rlNTl~hY~v~d~a~~~l~~~~~~~ 1938 (2400)
.||+|+..+ -..+|.+.|-+ .|+ ||+|+| ||..|+|.||-||-||.|..+.
T Consensus 40 lKE~I~~~f--------~a~~dqlvLIf----aGr-ILKD~d-------------TL~~~gI~Dg~TvHLVik~~~~ 90 (493)
T KOG0010|consen 40 LKELIAQRF--------GAPPDQLVLIY----AGR-ILKDDD-------------TLKQYGIQDGHTVHLVIKSQPR 90 (493)
T ss_pred HHHHHHHhc--------CCChhHeeeee----cCc-cccChh-------------hHHHcCCCCCcEEEEEeccCCC
Confidence 899998876 23467788875 454 799887 6888999999999999988543
No 88
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=40.49 E-value=74 Score=41.75 Aligned_cols=97 Identities=19% Similarity=0.264 Sum_probs=68.9
Q ss_pred HHHHhhccCchhHhHHHHhhccCCCCCcccchhhHHHHHHHHHH--HHHHHHHHHHHHHhcC----------------CC
Q psy15505 1718 RLFGQLIQNKTFLLLFIRTLESNRYFSMRDRVNVASLIMVTLQN--ILKTLLAELIEKCMEG----------------KS 1779 (2400)
Q Consensus 1718 ~~f~~ll~~k~Fl~~fi~tlE~q~~fs~rdr~~~aSLl~v~l~~--il~~Ll~~li~~~~~~----------------~~ 1779 (2400)
..|.+||.+... ..+-.+++--. +|+.-+|..|.-.++. -...+|.+|+++-+.. ..
T Consensus 55 ~~l~~lL~~~~~--~l~~~~~~~~~---~~~~~la~~lv~if~~~g~~~~~l~~L~~~Ei~~~~~~~~~~~~~~~~~~~~ 129 (395)
T cd05137 55 EKLEELLHRFSL--GLTTQISHDSP---GKLRKLSEMFLNIFQVSGRADEWLMALIEKEIDGIDKQSTASNLDMGQSSKH 129 (395)
T ss_pred HHHHHHHhcCCH--HHHHHHHHhCh---HhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcchhhhccccccccccc
Confidence 446667755442 23334443322 8888899988888888 6667777777776632 12
Q ss_pred CCccccccchHHHHHHHHHHHHHHHhHHhhhhcCchhHHHH
Q psy15505 1780 HPKLLLRRTESVAEKMLSSWFTFLLYKFLRECAGEPLYLLF 1820 (2400)
Q Consensus 1780 ~pkl~lRrtEsvvEkmltnW~s~~ly~~l~~~ag~pl~~L~ 1820 (2400)
.+..+||. .|++=||++.+|=.-=.+||++..|..+-.++
T Consensus 130 ~~ntLFRg-NSl~TK~l~~y~r~~G~~YL~~~L~p~I~~I~ 169 (395)
T cd05137 130 EANLLFRG-NSLLTKSLELYMRRLGKEYLEKTLGAKIREIN 169 (395)
T ss_pred cccccccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677765 59999999999998888999999997776665
No 89
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=40.27 E-value=30 Score=35.08 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=22.4
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy15505 1630 RKSTENTRVLKNMQEQMDILELRVAAECKEAFAELQTEITDLTG 1673 (2400)
Q Consensus 1630 rks~~~~r~~k~~~~qme~lE~~V~~eck~~FaeLqt~m~dl~~ 1673 (2400)
.+.++..+++.+++.|.+.++. +-.+|+.+...|.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~--------en~~L~~ei~~l~~ 59 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQK--------EWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHcC
Confidence 3445555666666666666653 56677777766653
No 90
>cd05391 RasGAP_p120GAP p120GAP is a negative regulator of Ras that stimulates hydrolysis of bound GTP to GDP. Once the Ras regulator p120GAP, a member of the GAP protein family, is recruited to the membrane, it is transiently immobilized to interact with Ras-GTP. The down regulation of Ras by p120GAP is a critical step in the regulation of many cellular processes, which is disrupted in approximately 30% of human cancers. p120GAP contains SH2, SH3, PH, calcium- and lipid-binding domains, suggesting its involvement in a complex network of cellular interactions in vivo.
Probab=40.13 E-value=52 Score=41.84 Aligned_cols=96 Identities=19% Similarity=0.316 Sum_probs=69.4
Q ss_pred HHhhccCchhHhHHHHhhccCCCCCcccchhhHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHH
Q psy15505 1720 FGQLIQNKTFLLLFIRTLESNRYFSMRDRVNVASLIMVTLQN--ILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLS 1797 (2400)
Q Consensus 1720 f~~ll~~k~Fl~~fi~tlE~q~~fs~rdr~~~aSLl~v~l~~--il~~Ll~~li~~~~~~~~~pkl~lRrtEsvvEkmlt 1797 (2400)
|..||-... +..+.+|-+-- .+||--+|+-|.-.+.. -...||..||++.++.-.++..+||+ .|+|=||++
T Consensus 6 l~~ll~~~~--~~~~~al~~vc---~~d~~~la~~Lv~vF~~~~~~~~ll~~Li~~EI~~~~~~~tLFR~-NSlaTK~~~ 79 (315)
T cd05391 6 FKELILQKE--LHVVYALSHVC---GQDRTLLASILLRIFLHEKLESLLLRTLNDREISMEDEATTLFRA-TTLASTLME 79 (315)
T ss_pred HHHHHhCCC--hHHHHHHHHHC---hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCChhhhhhc-CcHHHHHHH
Confidence 445555555 44455555432 26888899888887776 55567888888877544567777765 699999999
Q ss_pred HHHHHHHhHHhhhhcCchhHHHHH
Q psy15505 1798 SWFTFLLYKFLRECAGEPLYLLFR 1821 (2400)
Q Consensus 1798 nW~s~~ly~~l~~~ag~pl~~L~~ 1821 (2400)
..|=.-=.+||++..|..+=.++.
T Consensus 80 ~y~k~~G~~YL~~~L~pvI~~i~~ 103 (315)
T cd05391 80 QYMKATATKFVHHALKDSILKIME 103 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999877778999999988777664
No 91
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=40.01 E-value=28 Score=35.25 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15505 1637 RVLKNMQEQMDILELRVA 1654 (2400)
Q Consensus 1637 r~~k~~~~qme~lE~~V~ 1654 (2400)
+.++.+-.+.+.||.||.
T Consensus 42 ~~L~~L~~~a~rm~eRI~ 59 (75)
T TIGR02976 42 ALLQELYAKADRLEERID 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455566777777664
No 92
>KOG4403|consensus
Probab=39.61 E-value=32 Score=44.06 Aligned_cols=123 Identities=18% Similarity=0.195 Sum_probs=65.2
Q ss_pred heeeeccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccChHhHhhhccCCCCCCCcccc
Q psy15505 1625 LIAYRRKSTENTRVLKNMQEQMDILELRVAAECKEAFAELQTEITDLTGDLTSGGIPFLDYRTYAMMILFPNSEHHAVLQ 1704 (2400)
Q Consensus 1625 ~~~yrrks~~~~r~~k~~~~qme~lE~~V~~eck~~FaeLqt~m~dl~~dl~~~giPfldy~~y~~~~~Fp~~~~~p~~~ 1704 (2400)
.++| |..+.+++.++||-..||.| .++.+.|.|||..+++.-.+-...-+-=+|...-.+ ..|-|+
T Consensus 231 w~ay-~Qnk~akehv~km~kdle~L-----q~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~--------ea~rl~ 296 (575)
T KOG4403|consen 231 WFAY-RQNKKAKEHVNKMMKDLEGL-----QRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLD--------EAPRLS 296 (575)
T ss_pred hhhh-hhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh--------hhhhhh
Confidence 3445 55666777777777767766 345688999999887765543333333333322211 344444
Q ss_pred cCCch--hhhHHHHHHHHHhhccCchhHhHHHHhhccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy15505 1705 FERPE--LLHKEKGLRLFGQLIQNKTFLLLFIRTLESNRYFSMRDRVNVASLIMVTLQNILKTLLAELIEKCMEGK 1778 (2400)
Q Consensus 1705 ~~~~~--~~~~~~~l~~f~~ll~~k~Fl~~fi~tlE~q~~fs~rdr~~~aSLl~v~l~~il~~Ll~~li~~~~~~~ 1778 (2400)
++.-- -....+-|.|...-|.. -=+-||.+..+++-+ |||. +.+|.-++=-|+.+.|
T Consensus 297 elreg~e~e~~rkelE~lR~~L~k------AEkele~nS~wsaP~----------aLQ~-wLq~T~E~E~q~~~kk 355 (575)
T KOG4403|consen 297 ELREGVENETSRKELEQLRVALEK------AEKELEANSSWSAPL----------ALQK-WLQLTHEVEVQYYNKK 355 (575)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHH------HHHHHHhccCCCCcH----------HHHH-HHHHHHHHHHHHHHHH
Confidence 43221 01111233444433333 335788888888775 4553 3344445545555544
No 93
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.03 E-value=53 Score=36.49 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=20.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy15505 1633 TENTRVLKNMQEQMDILELRVAAECKEAFAELQTEITD 1670 (2400)
Q Consensus 1633 ~~~~r~~k~~~~qme~lE~~V~~eck~~FaeLqt~m~d 1670 (2400)
++-++++++.+.++++-...|.+-.-+. |||...|++
T Consensus 28 ~~l~~eL~~~k~el~~yk~~V~~HF~~t-a~Ll~~l~~ 64 (128)
T PF06295_consen 28 AKLEQELEQAKQELEQYKQEVNDHFAQT-AELLDNLTQ 64 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3446666777777777766555533322 445555544
No 94
>cd05130 RasGAP_Neurofibromin Neurofibromin is the product of the neurofibromatosis type 1 gene (NF1) and shares a region of similarity with catalytic domain of the mammalian p120RasGAP protein and an extended similarity with the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2. Neurofibromin has been shown to function as a GAP (GTPase-activating protein) which inhibits low molecular weight G proteins such as Ras by stimulating their intrinsic GTPase activity. NF1 is a common genetic disorder characterized by various symptoms ranging from predisposition for the development of tumors to learning disability or mental retardation. Loss of neurofibromin activity can be correlated to the increase in Ras-GTP concentration in neurofibromas of NF1 of patients, supporting the notion that unregulated Ras signaling may contribute to their development.
Probab=38.71 E-value=87 Score=40.17 Aligned_cols=86 Identities=19% Similarity=0.199 Sum_probs=63.2
Q ss_pred hHHHHhhccCCCCCcccchhhHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhHHh
Q psy15505 1731 LLFIRTLESNRYFSMRDRVNVASLIMVTLQN--ILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWFTFLLYKFL 1808 (2400)
Q Consensus 1731 ~~fi~tlE~q~~fs~rdr~~~aSLl~v~l~~--il~~Ll~~li~~~~~~~~~pkl~lRrtEsvvEkmltnW~s~~ly~~l 1808 (2400)
+....+|...-. .+|+--+|+.|.-.+.. .+..||..+|.+-++.-.++..+||+ .|++=||++.+|-.-=.+||
T Consensus 19 l~~~~al~~v~~--~~e~d~la~~lv~lf~~~~~l~~ll~~~i~~Ev~~~~~~~~lfRg-Ns~~tKl~~~y~k~~G~~yL 95 (329)
T cd05130 19 LPIAMALANVVP--CSQWDELARVLVTLFDSRHLLYQLLWNMFSKEVELADSMQTLFRG-NSLASKIMTFCFKVYGATYL 95 (329)
T ss_pred chHHHHHHHhCC--HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCHhHHHhc-CcHHHHHHHHHHHHHHHHHH
Confidence 445567776655 44444567776665555 88888999999988655678888876 59999999999887778899
Q ss_pred hhhcCchhHHH
Q psy15505 1809 RECAGEPLYLL 1819 (2400)
Q Consensus 1809 ~~~ag~pl~~L 1819 (2400)
++..|..+=.+
T Consensus 96 ~~~L~pvI~~i 106 (329)
T cd05130 96 QKLLEPLLREV 106 (329)
T ss_pred HHHHHHHHHHH
Confidence 99888554333
No 95
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=38.70 E-value=11 Score=47.35 Aligned_cols=77 Identities=9% Similarity=0.147 Sum_probs=59.2
Q ss_pred HHHhhccCCCCCcccchhhHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhHHhhh
Q psy15505 1733 FIRTLESNRYFSMRDRVNVASLIMVTLQN--ILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWFTFLLYKFLRE 1810 (2400)
Q Consensus 1733 fi~tlE~q~~fs~rdr~~~aSLl~v~l~~--il~~Ll~~li~~~~~~~~~pkl~lRrtEsvvEkmltnW~s~~ly~~l~~ 1810 (2400)
.+..|++=-. ||.-+|+-|.-.++. -+..||.+|+.+-++.-.+|..+||+ .|+|=||++.+|=.-=++||++
T Consensus 23 ~~~~l~~v~~----~~~elA~~Lv~if~~~~~~~~~l~~l~~~Ev~~~~~~~tLFRg-NSlaTK~m~~y~k~~G~~YL~~ 97 (310)
T cd05134 23 AAHILGEVCR----EKQEAAIPLVRLFLHYGKIVPFISAIASAEVNRTQDPNTIFRG-NSLTSKCIDETMKLAGMHYLQV 97 (310)
T ss_pred HHHHHHHhCc----cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCcchhhhc-CcHHHHHHHHHHHHHHHHHHHH
Confidence 3445555433 666788888777777 77889999999988766688888876 5999999999998888888886
Q ss_pred hcCc
Q psy15505 1811 CAGE 1814 (2400)
Q Consensus 1811 ~ag~ 1814 (2400)
..|.
T Consensus 98 tL~p 101 (310)
T cd05134 98 TLKP 101 (310)
T ss_pred HHHH
Confidence 6543
No 96
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=38.38 E-value=21 Score=37.64 Aligned_cols=16 Identities=13% Similarity=-0.070 Sum_probs=10.2
Q ss_pred ceEEeehhhHHHHHHH
Q psy15505 1605 TAMYGGIAIITILFLI 1620 (2400)
Q Consensus 1605 ~~i~~~~~~~~~l~li 1620 (2400)
.+|+||++++++++.+
T Consensus 66 gaiagi~vg~~~~v~~ 81 (96)
T PTZ00382 66 GAIAGISVAVVAVVGG 81 (96)
T ss_pred ccEEEEEeehhhHHHH
Confidence 4778877776655433
No 97
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=38.00 E-value=10 Score=36.96 Aligned_cols=24 Identities=21% Similarity=0.571 Sum_probs=0.4
Q ss_pred eEEeehhhHHHHHHHHHhhheeeecc
Q psy15505 1606 AMYGGIAIITILFLIFIAFLIAYRRK 1631 (2400)
Q Consensus 1606 ~i~~~~~~~~~l~li~~~~~~~yrrk 1631 (2400)
+|+|+++|+++. ++++++++||-|
T Consensus 14 vIaG~Vvgll~a--ilLIlf~iyR~r 37 (64)
T PF01034_consen 14 VIAGGVVGLLFA--ILLILFLIYRMR 37 (64)
T ss_dssp -------------------------S
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 444444443333 334445567643
No 98
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=37.96 E-value=28 Score=39.53 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=12.6
Q ss_pred eeecceehh-hhhHHHHHhhhhheecccc
Q psy15505 323 AMYGGIAII-TILFLIFIAFLIAYRRKST 350 (2400)
Q Consensus 323 ~ivgv~~~~-~~llii~i~~ii~yrRKs~ 350 (2400)
+|||+++++ +.+++++++++++|++|++
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c~r~k 78 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFCIRRK 78 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEEEecc
Confidence 455655553 2233333444444544433
No 99
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.65 E-value=39 Score=32.86 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHHhhheeeeccchHhHHHHHHHHHHHHHH
Q psy15505 1611 IAIITILFLIFIAFLIAYRRKSTENTRVLKNMQEQMDIL 1649 (2400)
Q Consensus 1611 ~~~~~~l~li~~~~~~~yrrks~~~~r~~k~~~~qme~l 1649 (2400)
++|+++..++.+...+-.||+.++.+|++++++.|+|+|
T Consensus 29 ~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 29 LLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333333334456788888888999999998876
No 100
>cd05133 RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that is widely expressed among vertebrate cell types from early embryogenesis. Mammalian IQGAP1 protein is the best characterized member of the IQGAP family, and contains several protein-interacting domains. Human IQGAP1 is most similar to mouse Iqgap1 (94% identity) and has 62% identity to human IQGAP2. IQGAP1 binds and cross-links actin filaments in vitro and has been implicated in Ca2+/calmodulin signaling, E-cadherin-dependent cell adhesion, cell motility, and invasion. Yeast IQGAP homologues have a role in the recruitment of actin filaments, are components of the spindle pole body, and are required for actomyosin ring assembly and cytokinesis. Furthermore, IQGAP1 over-expression has also been detected in gastric and colorectal carcinomas and gastric cancer cell lines.
Probab=37.10 E-value=32 Score=44.41 Aligned_cols=149 Identities=13% Similarity=0.204 Sum_probs=97.5
Q ss_pred ccchhHHhhhhhccccchhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcC-CCCchhhcccccCCCcceeee
Q psy15505 1993 KMVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHG-ITDPEVVHTWKSNSLPLRFWV 2071 (2400)
Q Consensus 1993 k~i~EiyltrLls~Kgtlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~-i~d~~~~h~WKtN~lpLRFWv 2071 (2400)
-.+.+++-.||.. |....+.||.+|.+..+ .+|..|+|++.-+=+.+.++= -.+++.+++==.+-+-|||--
T Consensus 113 peV~~~~~~~l~~----Lr~i~~~fl~~I~~S~~---~~P~~iR~ick~i~~~~~~kFP~~~~~~i~~~vG~fiflRfi~ 185 (360)
T cd05133 113 EEVRTRLDASIRN----MRTVTDKFLSAIVSSVD---KIPYGMRFIAKVLKDSLHEKFPDAGEDELLKIVGNLLYYRYMN 185 (360)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHhHH---hCCHHHHHHHHHHHHHHHHHCCCCchhhHHHHHHHHHHHHhcc
Confidence 4577888889866 55555555666665553 699999999999977666651 123344566667888999999
Q ss_pred ecccCCCeee--eec----cCCCCCcceeeehhhhccccccCCcccCCC---CCCccccccccchhHHHHHHHHHHHhhc
Q psy15505 2072 NLIKNPNFVF--DIH----KSNIVDSCLSVVAQTFMDSCSTSDHRLGKD---SPSSKLLYAKDIPAYKEWVERYYSDIKS 2142 (2400)
Q Consensus 2072 n~ikNp~fvf--Di~----~s~~vd~~lsviaqtfmdacs~se~~lgkd---spsnklLyakdip~yk~~v~~yy~~I~~ 2142 (2400)
-.|-.|+-.- |.+ .+...-..|.-||+.+....+..-- .||+ .|.|. =|-+.+..+.+|..+|-+
T Consensus 186 PAIvsPe~~~ii~~~~~~~~~~~~rrnL~~iaKvLQ~lan~~~f-~~~e~~m~pLN~-----fI~~~~~~~~~fl~~~~~ 259 (360)
T cd05133 186 PAIVAPDAFDIIDLSAGGQLTTDQRRNLGSIAKMLQHAASNKMF-LGDNAHLSIINE-----YLSQSYQKFRRFFQSACE 259 (360)
T ss_pred ccccCchhcCccccccCCCCCHHHHhhHHHHHHHHHHHHcCCCC-CCCccHHHHHHH-----HHHHHHHHHHHHHHHhCC
Confidence 9999998643 321 2455677899999998877653211 1111 12221 144567788899999888
Q ss_pred CCCCC-HHHHHHH
Q psy15505 2143 MQAIS-DQDMNAM 2154 (2400)
Q Consensus 2143 ~p~~s-~qem~~~ 2154 (2400)
.|.+. .=+|..|
T Consensus 260 V~d~ee~~~~dey 272 (360)
T cd05133 260 VPELQDKFNVDEY 272 (360)
T ss_pred CCCHHHhcChhHH
Confidence 77553 2244444
No 101
>KOG1159|consensus
Probab=35.96 E-value=56 Score=43.15 Aligned_cols=168 Identities=23% Similarity=0.312 Sum_probs=109.2
Q ss_pred CCcchhhhhhccHHHHHhcCCCCchhhcccccCCCcceeeee-cccCC-------CeeeeeccCC---CCCcceeee---
Q psy15505 2031 LPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVN-LIKNP-------NFVFDIHKSN---IVDSCLSVV--- 2096 (2400)
Q Consensus 2031 ~P~aiKy~FDflD~~A~~~~i~d~~~~h~WKtN~lpLRFWvn-~ikNp-------~fvfDi~~s~---~vd~~lsvi--- 2096 (2400)
++..+||.+=+|-+. ..++|.+++ .|-.-.+|+|-=.| .|+++ +|.|||.-+. ..-=||++.
T Consensus 167 ~~~~~k~~~l~~~~~---~~~~d~~~v-~~~~~~~~~k~~~N~rlT~~~HfQDVR~~~F~i~~s~~~~epGDvl~l~P~N 242 (574)
T KOG1159|consen 167 VQITTKYSLLELGKA---SDFSDSDIV-LEPQGQIPAKLVENRRLTSADHFQDVRLFEFDIPDSYEEFEPGDVLSLLPSN 242 (574)
T ss_pred ccccchhhhhhcccc---ccCCcchhh-hccccccccchhcceeecCcchhheeeEEEEecCCccccccCCCEEEEecCC
Confidence 667799999887655 344555443 34445566443322 34444 4677776521 122244443
Q ss_pred ----hhhhccccccCCcccCC-----CCCCccccccccch-hHHHHHHHHHHHhhcCCCCCHHHHHHHHH--HHHhhhcc
Q psy15505 2097 ----AQTFMDSCSTSDHRLGK-----DSPSSKLLYAKDIP-AYKEWVERYYSDIKSMQAISDQDMNAMLA--EESRLHNS 2164 (2400)
Q Consensus 2097 ----aqtfmdacs~se~~lgk-----dspsnklLyakdip-~yk~~v~~yy~~I~~~p~~s~qem~~~l~--~~s~~~~~ 2164 (2400)
-|+||+.|...+-++-. ..++.|+- +--.| .-+.+ -.||=||...|.=|==||-++++ |+=++.--
T Consensus 243 ~de~V~~Fie~~gl~~~~~~~l~~~s~~~~~~~~-~~~~p~sl~~~-lk~~~D~~SvPrrsFFe~l~~~s~~~~EkEkL~ 320 (574)
T KOG1159|consen 243 SDETVQRFIEYLGLDEDQLKPLKISSNDRSSPLP-LLPNPLSLLNL-LKYVLDFNSVPRRSFFEMLAHFSTDEMEKEKLQ 320 (574)
T ss_pred chHHHHHHHHHcCCChhhccccccccCccccccc-ccCCchhHHHH-HHHhcccccCcchHHHHHHHHHccChHHHHHHH
Confidence 58999999877766533 33344443 33344 34444 47888999999988888888876 44455567
Q ss_pred cccHHHHHHHHHHHHHhhHHHHHHHhhcChhhHhhhHHHHH
Q psy15505 2165 EFSTNCALYELYTYASKYNEQLTVTLEEDEFSQKQRLAYKL 2205 (2400)
Q Consensus 2165 ~f~~~~al~ely~y~~~y~~~i~~~L~~d~~~~~~~l~~~l 2205 (2400)
+|.+-.-+-+||+|++|=+-.|+|.||+=+ +.|.-+.+-|
T Consensus 321 efas~qg~ddl~dY~nRpRRtilEvLeDF~-sv~lp~~yl~ 360 (574)
T KOG1159|consen 321 EFASAQGIDDLYDYVNRPRRTILEVLEDFR-SVKLPIDYLL 360 (574)
T ss_pred HhccccchHHHHHHhcchhhhHHHHHHhch-hccCCHHHHH
Confidence 888999999999999999999999999877 3344444433
No 102
>KOG3848|consensus
Probab=34.92 E-value=14 Score=46.87 Aligned_cols=27 Identities=30% Similarity=0.866 Sum_probs=23.7
Q ss_pred CCCCccccccCCCcccceecCCCCCcc
Q psy15505 868 LANNCGLCLALPEKYGCGWCQSSKRCE 894 (2400)
Q Consensus 868 ~~~dCs~Cl~ad~~y~C~WC~~~~~C~ 894 (2400)
+..+|..|.+++-.|+|.||..-++|+
T Consensus 321 qfn~Cd~C~ns~ltFnClWC~vlqrCS 347 (516)
T KOG3848|consen 321 QFNTCDTCTNSTLTFNCLWCHVLQRCS 347 (516)
T ss_pred ccCCcChhhccCCCceeehHhhhhhhc
Confidence 357899999999889999998888887
No 103
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=34.77 E-value=13 Score=46.40 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhheeeeccchH
Q psy15505 1614 ITILFLIFIAFLIAYRRKSTE 1634 (2400)
Q Consensus 1614 ~~~l~li~~~~~~~yrrks~~ 1634 (2400)
+++|+|+.+|++++||||.+-
T Consensus 156 ~~iLLIA~iIa~icyrrkR~G 176 (290)
T PF05454_consen 156 AAILLIAGIIACICYRRKRKG 176 (290)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHhhhhhhcc
Confidence 344445555666778765543
No 104
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=34.61 E-value=23 Score=41.16 Aligned_cols=14 Identities=14% Similarity=0.010 Sum_probs=7.7
Q ss_pred EEecCceEEEeCCC
Q psy15505 1522 TSVSRLQLTCRPPA 1535 (2400)
Q Consensus 1522 ~~ls~~~L~C~pP~ 1535 (2400)
+....+|-.|.-+.
T Consensus 43 ~~~~~~q~~C~~~~ 56 (179)
T PF13908_consen 43 KRARLDQGSCDNYD 56 (179)
T ss_pred hhceeccccccccc
Confidence 43445666776544
No 105
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=34.54 E-value=13 Score=37.43 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHh
Q psy15505 1711 LHKEKGLRLFGQ 1722 (2400)
Q Consensus 1711 ~~~~~~l~~f~~ 1722 (2400)
.+..+|...|.+
T Consensus 60 EDP~qAV~eFAk 71 (75)
T PF14575_consen 60 EDPNQAVREFAK 71 (75)
T ss_dssp SSHHHHHHHCSS
T ss_pred cCHHHHHHHHHh
Confidence 345577777654
No 106
>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.
Probab=34.41 E-value=30 Score=34.33 Aligned_cols=65 Identities=18% Similarity=0.367 Sum_probs=44.6
Q ss_pred CCCccccccccchhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhh--c-ccccHHHHHHHHHHHHHh
Q psy15505 2115 SPSSKLLYAKDIPAYKEWVERYYSDIKSMQAISDQDMNAMLAEESRLH--N-SEFSTNCALYELYTYASK 2181 (2400)
Q Consensus 2115 spsnklLyakdip~yk~~v~~yy~~I~~~p~~s~qem~~~l~~~s~~~--~-~~f~~~~al~ely~y~~~ 2181 (2400)
||..---|.+++-.|.+|++. ..+...-.++..++..+++++.+.. . .-=+.++||+.+|+|+.+
T Consensus 15 s~~T~~~Y~~~l~~f~~~~~~--~~~~~~~~i~~~~v~~f~~~~~~~~~s~~T~~~~~~alr~f~~~l~~ 82 (84)
T PF02899_consen 15 SPNTIRSYRRDLRRFIRWLEE--HGIIDWEDITEEDVRDFLEYLAKEGLSPSTINRRLSALRAFFRFLYR 82 (84)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH--TTS-CGGG--HHHHHHHHHHHHCTT--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhh--hhhhhhhhhhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 555555577777777777776 5677788999999999999987642 1 223378888999998864
No 107
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=34.25 E-value=20 Score=40.89 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=27.5
Q ss_pred eccchHhHHHHHHHHHHHH--HHHHHHH------HHHHHHHHhhhcccccccccCCCC--CCCccChHh
Q psy15505 1629 RRKSTENTRVLKNMQEQMD--ILELRVA------AECKEAFAELQTEITDLTGDLTSG--GIPFLDYRT 1687 (2400)
Q Consensus 1629 rrks~~~~r~~k~~~~qme--~lE~~V~------~eck~~FaeLqt~m~dl~~dl~~~--giPfldy~~ 1687 (2400)
.+|-+.-+|.|+++..-.+ +||.-+. ++.++.-.+++.++.++...+... .+=++-|.-
T Consensus 22 ~~kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgvvRYnA 90 (151)
T PF14584_consen 22 NIKLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGVVRYNA 90 (151)
T ss_pred HHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEccC
Confidence 3555566666776632211 2333222 233444455666666555544322 233445543
No 108
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.38 E-value=73 Score=35.23 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=18.4
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15505 1632 STENTRVLKNMQEQMDILELRVAAECKEAFAE 1663 (2400)
Q Consensus 1632 s~~~~r~~k~~~~qme~lE~~V~~eck~~Fae 1663 (2400)
.++-++++++++-|+|+- |.|.-+-||+
T Consensus 36 q~~~q~ELe~~K~~ld~~----rqel~~HFa~ 63 (138)
T COG3105 36 QQKLQYELEKVKAQLDEY----RQELVKHFAR 63 (138)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 334677788888888765 5555566653
No 109
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=32.65 E-value=11 Score=41.46 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=20.1
Q ss_pred EEeehhhHHHHHHHHHh-hheeeeccchHhHHHHHHHHHHHHH
Q psy15505 1607 MYGGIAIITILFLIFIA-FLIAYRRKSTENTRVLKNMQEQMDI 1648 (2400)
Q Consensus 1607 i~~~~~~~~~l~li~~~-~~~~yrrks~~~~r~~k~~~~qme~ 1648 (2400)
++.|++++++++++|++ +.++-+||.|.+ ...++-..|.++
T Consensus 31 m~tILiaIvVliiiiivli~lcssRKkKaa-AAi~eediQfin 72 (189)
T PF05568_consen 31 MYTILIAIVVLIIIIIVLIYLCSSRKKKAA-AAIEEEDIQFIN 72 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-hhhhhhcccccC
Confidence 34445555555444444 344556665554 444444445444
No 110
>PF00616 RasGAP: GTPase-activator protein for Ras-like GTPase; InterPro: IPR001936 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []. This intrinsic GTPase activity of ras is stimulated by a family of proteins collectively known as 'GAP' or GTPase-activating proteins [, ]. As it is the GTP bound form of ras which is active, these proteins are said to be down-regulators of ras. The Ras GTPase-activating proteins are quite large (from 765 residues for sar1 to 3079 residues for IRA2) but share only a limited (about 250 residues) region of sequence similarity, referred to as the 'catalytic domain' or rasGAP domain. Note: There are distinctly different GAPs for the rap and rho/rac subfamilies of ras-like proteins (reviewed in reference []) that do not share sequence similarity with ras GAPs.; GO: 0005096 GTPase activator activity, 0051056 regulation of small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3BXJ_B 1WQ1_G 1WER_A 1NF1_A 3FAY_A.
Probab=29.61 E-value=55 Score=38.10 Aligned_cols=91 Identities=16% Similarity=0.285 Sum_probs=62.3
Q ss_pred cchhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcC-CCCchhhcccccCCCcceeeeecccCCCeee--eec
Q psy15505 2008 GTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHG-ITDPEVVHTWKSNSLPLRFWVNLIKNPNFVF--DIH 2084 (2400)
Q Consensus 2008 gtlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~-i~d~~~~h~WKtN~lpLRFWvn~ikNp~fvf--Di~ 2084 (2400)
..|.++++.+++.|...-+ .+|..|||++-.+=+.+.+.- -.+++....==+..+-|||-.-.|-||+-.- |..
T Consensus 100 ~~L~~~~~~~~~~i~~s~~---~~P~~lr~i~~~i~~~~~~~fp~~~~~~~~~~v~~fiflrfi~PAi~~P~~~~~~~~~ 176 (197)
T PF00616_consen 100 QNLRELCESFLDAIISSID---QIPPSLRYICKQIYEAVEKKFPDASPEEILSAVGGFIFLRFICPAIVSPELFGLVDKP 176 (197)
T ss_dssp HHHHHHHHHHHHHHHGGGG---GS-HHHHHHHHHHHHHHHHHTTTSSHCHHHHHHHHHHTTTTHHHHHHSTTTTTSSSS-
T ss_pred HHHHHHHHHHHHHHHHhHH---HhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHCCHHHcCCCCCC
Confidence 4466777777777777654 699999999999888877663 3445666655668899999999999998532 444
Q ss_pred cCCCCCcceeeehhhhc
Q psy15505 2085 KSNIVDSCLSVVAQTFM 2101 (2400)
Q Consensus 2085 ~s~~vd~~lsviaqtfm 2101 (2400)
.++.+-..|..||..+.
T Consensus 177 ~~~~~~r~L~~isKvlq 193 (197)
T PF00616_consen 177 PSPNARRNLTLISKVLQ 193 (197)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 45556666666665543
No 111
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=29.26 E-value=55 Score=34.23 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=19.7
Q ss_pred eccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy15505 1629 RRKSTENTRVLKNMQEQMDILELRVAAECKEAFAELQTEITDLT 1672 (2400)
Q Consensus 1629 rrks~~~~r~~k~~~~qme~lE~~V~~eck~~FaeLqt~m~dl~ 1672 (2400)
+..+++...++.+++.|.+.|+. +...|+.|...++
T Consensus 34 ~~~~~~~~~~l~~l~~~~~~l~~--------e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 34 RHQSRQLFYELQQLEKEIDQLQE--------ENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhh
Confidence 33455555555566655555543 4555666655554
No 112
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=29.15 E-value=33 Score=46.42 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=17.1
Q ss_pred ceEEeehhhHHHHHHHHHhhheeeecc
Q psy15505 1605 TAMYGGIAIITILFLIFIAFLIAYRRK 1631 (2400)
Q Consensus 1605 ~~i~~~~~~~~~l~li~~~~~~~yrrk 1631 (2400)
.+|+|+++.++++++||||+.++..||
T Consensus 270 WII~gVlvPv~vV~~Iiiil~~~LCRk 296 (684)
T PF12877_consen 270 WIIAGVLVPVLVVLLIIIILYWKLCRK 296 (684)
T ss_pred EEEehHhHHHHHHHHHHHHHHHHHhcc
Confidence 467777777776766666665444444
No 113
>KOG3836|consensus
Probab=28.91 E-value=1.1e+02 Score=41.55 Aligned_cols=101 Identities=23% Similarity=0.224 Sum_probs=65.7
Q ss_pred eEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCeeeecccceeecccEEEEEeCCCCCCCCccccEEEEEccc
Q psy15505 917 EITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVCQVDGPGTRGSREGPVIVKIEDF 996 (2400)
Q Consensus 917 ~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~~C~v~~~~y~~st~IvC~tpps~~~~~~~G~V~V~V~~~ 996 (2400)
++..+.|..|++.||..|+.-|.||-. .... ..|- ..++++=..++. ...|.|.|.+.+-
T Consensus 244 vprd~~~~Q~~i~~~~~v~~~g~n~~~----~als-----~~~~-------~~s~~~~~l~~~----d~~~~v~~~i~~~ 303 (605)
T KOG3836|consen 244 VPRDMRRFQVLINGGVEVTLLGANFKD----IALS-----TQCS-------EESTMVNYLPPS----DNPGSVSVSITDP 303 (605)
T ss_pred Cccccccccccccccceecccccchhh----hhhc-----cccc-------ccccceeecccc----ccCCCceeeeccc
Confidence 678899999999999999999999733 1111 1111 123344344443 3456666666532
Q ss_pred ccccccceE--E---e--CcEEEEEecCceecCCCcEEEEEeecCCCC
Q psy15505 997 RGQSKDNYQ--F---V--DPVIKSIQPLQGPRSGGTILHISGSHMNAG 1037 (2400)
Q Consensus 997 ~~~S~~~Ft--Y---~--~P~ItsIsP~~GP~sGGT~VTItGs~L~~g 1037 (2400)
.-.+...|. + . .|.|..+.|..|++-||+.++|.|-+|..+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~i~~yvp~t~~q~~~~al~ivg~n~~~~ 351 (605)
T KOG3836|consen 304 SETSDSNNSNSSPPTSSSTKAIFTYVPSTDRQLIEYALQIVGLNMNGK 351 (605)
T ss_pred cccccccccccCCccCCCcccceeeecCCCceeeeeEEEEecccccCc
Confidence 211111111 1 1 588999999999999999999999999766
No 114
>PHA03049 IMV membrane protein; Provisional
Probab=28.75 E-value=12 Score=36.52 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhheeeeccchHhHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy15505 1614 ITILFLIFIAFLIAYRRKSTENTRVLK-NMQEQMDILELRVAAECKE 1659 (2400)
Q Consensus 1614 ~~~l~li~~~~~~~yrrks~~~~r~~k-~~~~qme~lE~~V~~eck~ 1659 (2400)
+++++++.+++.-+|+||+....+.-+ ..-+.||++-..-+|+-|.
T Consensus 9 iICVaIi~lIvYgiYnkk~~~q~~~p~~e~ye~~e~~kT~yvD~L~~ 55 (68)
T PHA03049 9 IICVVIIGLIVYGIYNKKTTTSQNPPSQEKYEKMEDLKTGYVDKLKS 55 (68)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCCCChhhccCchhhhhhHHhhcCH
Confidence 344444555555568888776543321 2235677777766666553
No 115
>PTZ00370 STEVOR; Provisional
Probab=27.16 E-value=14 Score=45.49 Aligned_cols=10 Identities=30% Similarity=0.684 Sum_probs=5.1
Q ss_pred heeeeccchH
Q psy15505 1625 LIAYRRKSTE 1634 (2400)
Q Consensus 1625 ~~~yrrks~~ 1634 (2400)
+|+|||+.+.
T Consensus 276 iwlyrrRK~s 285 (296)
T PTZ00370 276 IWLYRRRKNS 285 (296)
T ss_pred HHHHHhhcch
Confidence 3456655443
No 116
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=26.78 E-value=1.4e+02 Score=28.95 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=30.8
Q ss_pred cccccHHHHHHHHHHHHHhhHHHHHHHhhcChhhHhhhHHHHHHHHHHhc
Q psy15505 2163 NSEFSTNCALYELYTYASKYNEQLTVTLEEDEFSQKQRLAYKLEQKSNAG 2212 (2400)
Q Consensus 2163 ~~~f~~~~al~ely~y~~~y~~~i~~~L~~d~~~~~~~l~~~l~~v~~~~ 2212 (2400)
.++||+-.||..||+.++.=.. .+++........+...|+.+...+
T Consensus 7 dDDfNT~~Ala~lf~l~~~~N~----~~~~~~~~~~~~~~~~l~~~~~vL 52 (63)
T PF09190_consen 7 DDDFNTPEALAALFELVKEINR----ALESNDKEDLEALAAALRKLLDVL 52 (63)
T ss_dssp CBTS-HHHHHHHHHHHHHHHHH----HHHCC-HHHHHHHHHHHHHHHHCC
T ss_pred hHhcCcHHHHHHHHHHHHHHHH----hcccCCHHHHHHHHHHHHHHHhcC
Confidence 5899999999998887765444 455555555566667777666554
No 117
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=25.29 E-value=75 Score=35.56 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=19.8
Q ss_pred eeeeccchHhHHHHHHHHHHHHHHHHHHH
Q psy15505 1626 IAYRRKSTENTRVLKNMQEQMDILELRVA 1654 (2400)
Q Consensus 1626 ~~yrrks~~~~r~~k~~~~qme~lE~~V~ 1654 (2400)
+=|.|.++...+..+.++.++++||.++.
T Consensus 94 ~E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~ 122 (134)
T PF07047_consen 94 YEYWRSARKEAKKEEELQERLEELEERIE 122 (134)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33666665555555678888888887664
No 118
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=24.93 E-value=23 Score=44.47 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=8.9
Q ss_pred Hhhhhheecccchhh
Q psy15505 339 IAFLIAYRRKSTENT 353 (2400)
Q Consensus 339 i~~ii~yrRKs~eae 353 (2400)
+.+|+-||||.+..+
T Consensus 275 IYLILRYRRKKKmkK 289 (299)
T PF02009_consen 275 IYLILRYRRKKKMKK 289 (299)
T ss_pred HHHHHHHHHHhhhhH
Confidence 334556888766543
No 119
>smart00323 RasGAP GTPase-activator protein for Ras-like GTPases. All alpha-helical domain that accelerates the GTPase activity of Ras, thereby "switching" it into an "off" position. Improved domain limits from structure.
Probab=24.15 E-value=1.8e+02 Score=37.39 Aligned_cols=86 Identities=17% Similarity=0.216 Sum_probs=61.7
Q ss_pred hHHHHhhccCCCCCcccchhhHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhHHh
Q psy15505 1731 LLFIRTLESNRYFSMRDRVNVASLIMVTLQN--ILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWFTFLLYKFL 1808 (2400)
Q Consensus 1731 ~~fi~tlE~q~~fs~rdr~~~aSLl~v~l~~--il~~Ll~~li~~~~~~~~~pkl~lRrtEsvvEkmltnW~s~~ly~~l 1808 (2400)
...+.++++-.++. ++--+|+-|+..+.. ....+|.+||++.++.-.++..+||+. |++=|+++.+|-..=..||
T Consensus 39 ~~~~~~l~~~~~~~--~~~~~~~~Lv~~f~~~~~~~~~L~~li~~Ei~~~~~~~~lfR~N-sl~tk~l~~y~k~~g~~yL 115 (344)
T smart00323 39 LSLASALSEVCSGL--DKDELATKLVRLFLRRGRGHPFLRALIDPEVERTDDPNTIFRGN-SLATKSMEVYMKLVGNQYL 115 (344)
T ss_pred HHHHHHHHHhCChH--hHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHcCCcHhhHhhhc-cHhHHHHHHHHHHHhHHHH
Confidence 55677777655444 444577777777766 777888888888876545677777764 8999999999887777899
Q ss_pred hhhcCchhHHH
Q psy15505 1809 RECAGEPLYLL 1819 (2400)
Q Consensus 1809 ~~~ag~pl~~L 1819 (2400)
++..+..+=.+
T Consensus 116 ~~~l~~~i~~i 126 (344)
T smart00323 116 HTTLKPVLKKI 126 (344)
T ss_pred HHHHHHHHHHH
Confidence 98776554443
No 120
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=24.14 E-value=54 Score=29.38 Aligned_cols=20 Identities=40% Similarity=0.466 Sum_probs=10.0
Q ss_pred HHHhhheeeeccchHhHHHHH
Q psy15505 1620 IFIAFLIAYRRKSTENTRVLK 1640 (2400)
Q Consensus 1620 i~~~~~~~yrrks~~~~r~~k 1640 (2400)
+.|+.+++|| |-..++|.++
T Consensus 22 i~iva~~iYR-Kw~aRkr~l~ 41 (43)
T PF08114_consen 22 IGIVALFIYR-KWQARKRALQ 41 (43)
T ss_pred HHHHHHHHHH-HHHHHHHHHh
Confidence 3344456674 4455555443
No 121
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=24.01 E-value=32 Score=35.25 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy15505 1644 EQMDILELRVAAE 1656 (2400)
Q Consensus 1644 ~qme~lE~~V~~e 1656 (2400)
.+.+.|=.|+|++
T Consensus 37 rkId~li~RIrer 49 (81)
T PF00558_consen 37 RKIDRLIERIRER 49 (81)
T ss_dssp --CHHHHHHHHCT
T ss_pred HhHHHHHHHHHcc
Confidence 3344554455543
No 122
>KOG1025|consensus
Probab=23.54 E-value=41 Score=46.82 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=17.2
Q ss_pred CCCCCcceeeehhhhccccccCC
Q psy15505 2086 SNIVDSCLSVVAQTFMDSCSTSD 2108 (2400)
Q Consensus 2086 s~~vd~~lsviaqtfmdacs~se 2108 (2400)
-+.+|+-.-.++|.+-++=+.+.
T Consensus 993 ~~~~D~~e~l~pq~~f~~p~~s~ 1015 (1177)
T KOG1025|consen 993 EDMVDGDEYLVPQQDFLQPSASS 1015 (1177)
T ss_pred hhccCchhhcCcccccCCCCCCC
Confidence 57789988888997777655544
No 123
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=23.35 E-value=25 Score=37.88 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=1.4
Q ss_pred EeehhhHHHHHHHHHhhheeeeccchHhHHHHHHHHH
Q psy15505 1608 YGGIAIITILFLIFIAFLIAYRRKSTENTRVLKNMQE 1644 (2400)
Q Consensus 1608 ~~~~~~~~~l~li~~~~~~~yrrks~~~~r~~k~~~~ 1644 (2400)
+||++.+++|.+++++-+|.|||+|- ||.+..
T Consensus 27 aGIGiL~VILgiLLliGCWYckRRSG-----Yk~L~~ 58 (118)
T PF14991_consen 27 AGIGILIVILGILLLIGCWYCKRRSG-----YKTLRD 58 (118)
T ss_dssp -SSS---------------------------------
T ss_pred ccceeHHHHHHHHHHHhheeeeecch-----hhhhhh
Confidence 44444444444444444666777664 555543
No 124
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=23.34 E-value=48 Score=45.49 Aligned_cols=84 Identities=25% Similarity=0.306 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhh------cccccHHHHHHH-HHHHHHhh---HHHHHHHhhcChhhH-
Q psy15505 2129 YKEWVERYYSDIKSMQAISDQDMNAMLAEESRLH------NSEFSTNCALYE-LYTYASKY---NEQLTVTLEEDEFSQ- 2197 (2400)
Q Consensus 2129 yk~~v~~yy~~I~~~p~~s~qem~~~l~~~s~~~------~~~f~~~~al~e-ly~y~~~y---~~~i~~~L~~d~~~~- 2197 (2400)
-++.+++--+++.+ -||.-..++..+.+....+ ..+.-....+-| +..|.++| .++|-.+|.+....=
T Consensus 453 ~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~~f~~Ae~lF~ 531 (569)
T PRK04778 453 VSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEEVAEALNEAERLFR 531 (569)
T ss_pred HHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 34445555566666 5666666654444443322 133333344433 66777777 355666665543322
Q ss_pred hhhHHHHHHHHHHhcc
Q psy15505 2198 KQRLAYKLEQKSNAGM 2213 (2400)
Q Consensus 2198 ~~~l~~~l~~v~~~~~ 2213 (2400)
.-+-..-|+.++.++|
T Consensus 532 ~~~Y~~al~~~~~alE 547 (569)
T PRK04778 532 EYDYKAALEIIATALE 547 (569)
T ss_pred hCChHHHHHHHHHHHH
Confidence 2222334555555554
No 125
>PF00960 Neocarzinostat: Neocarzinostatin family; InterPro: IPR002186 This family is comprised of antitumour antibiotic chromoproteins, as represented by neocarzinostatin []. These chromoproteins consist of a noncovalently bound, labile enediyne chromophore and its stabilising carrier apoprotein. The protein component of the chromophore displays an unusual bicyclic dienediyne structure. The chromoprotein inter-chelates the DNA, where its cycloaromatisation produces a biradical intermediate that has the ability to abstract hydrogens from the sugar moiety of DNA. This causes single- and double-strand breaks in the DNA []. In addition to their ability to cleave DNA at sites specific for each chromophore, results indicate that these chromoproteins also possess proteolytic activity against histones, with histone H1 as the preferred substrate []. Neocarzinostatin has 2 disulphide bridges and is kidney-shaped with 2 defined domains that hold a binding cavity. The larger domain forms a 7-stranded antiparallel beta-barrel and the smaller domain consists of 2 anti-parallel strands of beta sheet that are perpendicular to each other []. Other members of this family include macromycin, actinoxanthine, kedarcidin [], and C-1027 [].; GO: 0003677 DNA binding, 0006952 defense response; PDB: 2G0K_A 2CBT_A 2CBO_A 2CBQ_E 2CBM_A 1J5I_A 1NCO_A 1NOA_A 1J5H_A 1O5P_A ....
Probab=23.10 E-value=3.2e+02 Score=29.89 Aligned_cols=43 Identities=26% Similarity=0.494 Sum_probs=34.3
Q ss_pred EEecCCccCCCCcEEEEEEecCCCCCcEEEEeCCccceeEEecCceEEEE
Q psy15505 17 CVRQTKGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCV 66 (2400)
Q Consensus 17 sIsPt~GP~aGGT~LTItG~~L~tGS~v~VtVG~~pC~I~~v~~t~I~C~ 66 (2400)
+++|..|-. -|+.+|++|.+|..|+.+.|. .|.. .....+-|.
T Consensus 3 svsPstGLs-dgqtVtVsgTGl~~gt~~~v~----qCa~--~~~g~~~C~ 45 (110)
T PF00960_consen 3 SVSPSTGLS-DGQTVTVSGTGLTAGTVYHVG----QCAA--VDPGRIACN 45 (110)
T ss_dssp EEESSSSBS-TTEEEEEEEESSSTTSEEEEE----EEEE--ECTTEEEEE
T ss_pred eecCCCCCC-CCCEEEEEeeccCCCCEEEEE----Eccc--cCCCCcccc
Confidence 589999876 677799999999999888774 7865 345678884
No 126
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=22.77 E-value=51 Score=34.52 Aligned_cols=7 Identities=29% Similarity=0.079 Sum_probs=3.1
Q ss_pred HhHHHHH
Q psy15505 1634 ENTRVLK 1640 (2400)
Q Consensus 1634 ~~~r~~k 1640 (2400)
.-+||+-
T Consensus 76 ~~~reLv 82 (98)
T PF07204_consen 76 TFHRELV 82 (98)
T ss_pred HHHHHHH
Confidence 3444443
No 127
>PRK01919 tatB sec-independent translocase; Provisional
Probab=22.39 E-value=1.5e+02 Score=34.56 Aligned_cols=35 Identities=11% Similarity=0.231 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccCC
Q psy15505 1642 MQEQMDILELRVAAECKEAFAELQTEITDLTGDLT 1676 (2400)
Q Consensus 1642 ~~~qme~lE~~V~~eck~~FaeLqt~m~dl~~dl~ 1676 (2400)
++.+++.--..|.+...+.+.|++.++.|-+.+..
T Consensus 62 ~~~~~e~~~~~v~~si~~~~~~~~~~~~~~~~~~~ 96 (169)
T PRK01919 62 MKTDFESAARDVENTIHDNLSEHESDLNDAWNSAV 96 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcc
Confidence 33333333345666667777888888887666644
No 128
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=22.11 E-value=20 Score=35.27 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhheeeeccchHhHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy15505 1614 ITILFLIFIAFLIAYRRKSTENTRVLKNMQ-EQMDILELRVAAECKE 1659 (2400)
Q Consensus 1614 ~~~l~li~~~~~~~yrrks~~~~r~~k~~~-~qme~lE~~V~~eck~ 1659 (2400)
+++++++.+++.-+|+||+......-...+ ..||++-..-+|+-|.
T Consensus 9 ~ICVaii~lIlY~iYnr~~~~q~~~~~~e~y~~~~~~kT~yVd~L~~ 55 (68)
T PF05961_consen 9 IICVAIIGLILYGIYNRKKTTQNTNPSTENYEKMENLKTGYVDKLKP 55 (68)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCCCchhhcCCccccchhHHhccCH
Confidence 344445555555568888776433222211 1255555555555443
No 129
>PRK00708 sec-independent translocase; Provisional
Probab=22.10 E-value=1.1e+02 Score=36.61 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=8.2
Q ss_pred HHHHHHHhhhcccccccccC
Q psy15505 1656 ECKEAFAELQTEITDLTGDL 1675 (2400)
Q Consensus 1656 eck~~FaeLqt~m~dl~~dl 1675 (2400)
+.++.|.+|+....++.+++
T Consensus 77 ~l~~~~~~l~~~~~~i~~~~ 96 (209)
T PRK00708 77 SLRQAMNPLRQAGNEIKSDL 96 (209)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 33444444443333333333
No 130
>KOG3611|consensus
Probab=22.00 E-value=40 Score=47.29 Aligned_cols=37 Identities=38% Similarity=0.848 Sum_probs=30.0
Q ss_pred EEECCceeeeecccc-CCCCCCCcCccCCCCcCCCCCCC
Q psy15505 1081 HSFTELVQTLTCWDC-LNRKDPYCGWCSLDNKCSLRSDC 1118 (2400)
Q Consensus 1081 V~~d~~~~~~~C~~c-~~~~dpycgwC~l~~rCs~~~~c 1118 (2400)
|....+..+..|.+| +. .||||+|=.-.++|++....
T Consensus 489 vpl~~C~~y~~C~dccla-rDPYCAWd~~~~~C~~~~~~ 526 (737)
T KOG3611|consen 489 VPLARCSRYGSCADCCLA-RDPYCAWDGVNSKCSLLSPT 526 (737)
T ss_pred eehhHhhcccchhhhhhc-cCCCccccCCCCcceECCCC
Confidence 777788877789986 55 89999998888899986544
No 131
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=21.83 E-value=56 Score=33.74 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=30.3
Q ss_pred eeccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy15505 1628 YRRKSTENTRVLKNMQEQMDILELRVAAECKEAFAELQTEITDLTG 1673 (2400)
Q Consensus 1628 yrrks~~~~r~~k~~~~qme~lE~~V~~eck~~FaeLqt~m~dl~~ 1673 (2400)
-++.-++..+..++++.|+|.+-..+.+--++. -++..|+.+-.+
T Consensus 24 l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~-n~l~~dv~~k~~ 68 (90)
T PF06103_consen 24 LKKTLDEVNKTIDTLQEQVDPITKEINDLLHNT-NELLEDVNEKLE 68 (90)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 345566777788888999998887777766655 445555544443
No 132
>PRK04654 sec-independent translocase; Provisional
Probab=21.79 E-value=1.2e+02 Score=36.30 Aligned_cols=10 Identities=10% Similarity=-0.290 Sum_probs=4.3
Q ss_pred EeehhhHHHH
Q psy15505 1608 YGGIAIITIL 1617 (2400)
Q Consensus 1608 ~~~~~~~~~l 1617 (2400)
++|+.+=++|
T Consensus 2 FgIG~~ELLl 11 (214)
T PRK04654 2 FDIGVGELTL 11 (214)
T ss_pred CCccHHHHHH
Confidence 3444443333
No 133
>PF06116 RinB: Transcriptional activator RinB; InterPro: IPR009300 This family consists of several Staphylococcus aureus bacteriophage RinB proteins and related sequences from their host. The int gene of staphylococcal bacteriophage phi 11 is the only viral gene responsible for the integrative recombination of phi 11. rinA and rinB, are both required to activate expression of the int gene [].
Probab=21.74 E-value=33 Score=32.21 Aligned_cols=49 Identities=27% Similarity=0.586 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhHHhhhhcCchhHHHHHHHHccccccCcceeecccccccc
Q psy15505 1792 AEKMLSSWFTFLLYKFLRECAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLS 1844 (2400)
Q Consensus 1792 vEkmltnW~s~~ly~~l~~~ag~pl~~L~~aik~QvekGPvDaitg~ArytL~ 1844 (2400)
..++|--||+++||.--| .+|+.||.-+.| ..-|| -|.|...++ .+.||
T Consensus 2 IKrilkiwftiamYELgK-~i~~el~i~lta-nD~Ve-aP~DF~~~D-h~~Ln 50 (53)
T PF06116_consen 2 IKRILKIWFTIAMYELGK-YITEELYIKLTA-NDDVE-APKDFAKSD-HIHLN 50 (53)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHheeeeec-Ccccc-Cchhhcccc-HHHHh
Confidence 346888999999999544 777887765554 44566 888876633 34444
No 134
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=21.73 E-value=41 Score=38.71 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=28.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccC
Q psy15505 1633 TENTRVLKNMQEQMDILELRVAAECKEAFAELQTEITDLTGDL 1675 (2400)
Q Consensus 1633 ~~~~r~~k~~~~qme~lE~~V~~eck~~FaeLqt~m~dl~~dl 1675 (2400)
.+.+...++++.+.++++.+=.....++|.+.|.++.+...++
T Consensus 43 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 85 (168)
T PF01956_consen 43 DKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQEM 85 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHH
Confidence 4444444667788888877666666677777777776655443
No 135
>cd04519 RasGAP RasGAP: Ras-GTPase Activating Domain. RasGAP functions as an enhancer of the hydrolysis of GTP that is bound to Ras-GTPases. Proteins having a RasGAP domain include p120GAP, IQGAP, Rab5-activating protein 6, and Neurofibromin. Although the Rho (Ras homolog) GTPases are most closely related to members of the Ras family, RhoGAP and RasGAP show no sequence homology at their amino acid level. RasGTPases function as molecular switches in a myriad of signaling pathways. When bound to GTP they are in the on state and when bound to GDP they are in the off state. The RasGap domain speeds up the hydrolysis of GTP in Ras-like proteins acting as a negative regulator.
Probab=20.85 E-value=2.8e+02 Score=34.54 Aligned_cols=66 Identities=23% Similarity=0.361 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhHHhhhhcCchh
Q psy15505 1750 NVASLIMVTLQN--ILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWFTFLLYKFLRECAGEPL 1816 (2400)
Q Consensus 1750 ~~aSLl~v~l~~--il~~Ll~~li~~~~~~~~~pkl~lRrtEsvvEkmltnW~s~~ly~~l~~~ag~pl 1816 (2400)
.++..|+..+.. .+..||..++++-++.-.++..+||+ .|.+-|+++.++.....+||++..+..+
T Consensus 34 ~~~~~ll~~~~~~~~~~~ll~~li~~ei~~~~~~~~lfr~-ns~~t~~~~~y~~~~~~~yl~~~l~~~~ 101 (318)
T cd04519 34 ELAISLLTLFLSRGKLLELLKELIKPEIKRTDEPNTLFRG-NSLATRPLSIYLKLIGQEYLQKTLKPVI 101 (318)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHhcCCchhHHhhh-chHhhHHHHHHHHHhCHHHHHHHHhhHH
Confidence 344444444444 78888888888888654467788877 6899999999999999999998776433
No 136
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.74 E-value=40 Score=37.28 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=7.4
Q ss_pred EeehhhHHHHHHHHHh
Q psy15505 1608 YGGIAIITILFLIFIA 1623 (2400)
Q Consensus 1608 ~~~~~~~~~l~li~~~ 1623 (2400)
++|+|++++|+|++++
T Consensus 5 ~~iii~~i~l~~~~~~ 20 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFY 20 (130)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 137
>PF15102 TMEM154: TMEM154 protein family
Probab=20.69 E-value=59 Score=36.80 Aligned_cols=16 Identities=38% Similarity=0.744 Sum_probs=7.2
Q ss_pred hHHHHHhhhhheeccc
Q psy15505 334 LFLIFIAFLIAYRRKS 349 (2400)
Q Consensus 334 llii~i~~ii~yrRKs 349 (2400)
|+++++++++.||||.
T Consensus 71 LLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 71 LLLSVVCLVIYYKRKR 86 (146)
T ss_pred HHHHHHHheeEEeecc
Confidence 3333344444555543
No 138
>PF00960 Neocarzinostat: Neocarzinostatin family; InterPro: IPR002186 This family is comprised of antitumour antibiotic chromoproteins, as represented by neocarzinostatin []. These chromoproteins consist of a noncovalently bound, labile enediyne chromophore and its stabilising carrier apoprotein. The protein component of the chromophore displays an unusual bicyclic dienediyne structure. The chromoprotein inter-chelates the DNA, where its cycloaromatisation produces a biradical intermediate that has the ability to abstract hydrogens from the sugar moiety of DNA. This causes single- and double-strand breaks in the DNA []. In addition to their ability to cleave DNA at sites specific for each chromophore, results indicate that these chromoproteins also possess proteolytic activity against histones, with histone H1 as the preferred substrate []. Neocarzinostatin has 2 disulphide bridges and is kidney-shaped with 2 defined domains that hold a binding cavity. The larger domain forms a 7-stranded antiparallel beta-barrel and the smaller domain consists of 2 anti-parallel strands of beta sheet that are perpendicular to each other []. Other members of this family include macromycin, actinoxanthine, kedarcidin [], and C-1027 [].; GO: 0003677 DNA binding, 0006952 defense response; PDB: 2G0K_A 2CBT_A 2CBO_A 2CBQ_E 2CBM_A 1J5I_A 1NCO_A 1NOA_A 1J5H_A 1O5P_A ....
Probab=20.07 E-value=4.3e+02 Score=28.94 Aligned_cols=43 Identities=26% Similarity=0.522 Sum_probs=32.7
Q ss_pred EEecCceecCCCcEEEEEeecCCCCCcEEEEECCceeEEEEecCceEEEE
Q psy15505 1013 SIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCV 1062 (2400)
Q Consensus 1013 sIsP~~GP~sGGT~VTItGs~L~~gs~v~V~IG~~~C~i~s~s~t~I~C~ 1062 (2400)
+++|..|-. -|+.||++|++|..+..+.| ..|... ....+-|.
T Consensus 3 svsPstGLs-dgqtVtVsgTGl~~gt~~~v----~qCa~~--~~g~~~C~ 45 (110)
T PF00960_consen 3 SVSPSTGLS-DGQTVTVSGTGLTAGTVYHV----GQCAAV--DPGRIACN 45 (110)
T ss_dssp EEESSSSBS-TTEEEEEEEESSSTTSEEEE----EEEEEE--CTTEEEEE
T ss_pred eecCCCCCC-CCCEEEEEeeccCCCCEEEE----EEcccc--CCCCcccc
Confidence 689999865 56999999999999977666 367553 35667773
Done!