Query psy15505
Match_columns 2400
No_of_seqs 632 out of 1577
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 23:01:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15505.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15505hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ig3_A Plxna3 protein; plexin 100.0 5E-220 2E-224 2016.8 35.6 583 1632-2215 2-626 (627)
2 3hm6_X Plexin-B1; structural g 100.0 2E-220 6E-225 2020.6 29.0 579 1625-2216 17-641 (644)
3 2uzx_B Hepatocyte growth facto 100.0 1.4E-80 4.6E-85 824.4 27.6 575 381-1091 105-713 (727)
4 3oky_A Plexin-A2; transmembran 100.0 3.3E-79 1.1E-83 798.4 40.0 541 379-1267 89-658 (681)
5 3al9_A Plexin-A2; beta-propell 100.0 1.1E-63 3.9E-68 642.9 32.3 377 380-768 91-493 (539)
6 3ol2_B Plexin-B1; beta-propell 100.0 2.6E-63 8.9E-68 633.4 30.1 362 383-768 90-478 (528)
7 4fww_A Macrophage-stimulating 100.0 3E-56 1E-60 576.7 26.5 369 378-764 84-492 (527)
8 3oky_B Putative uncharacterize 100.0 2.4E-52 8.2E-57 532.4 31.2 381 347-778 79-530 (565)
9 1olz_A Semaphorin 4D; developm 100.0 1.5E-51 5.1E-56 541.0 33.4 348 372-768 85-494 (663)
10 3nvn_B Plexin-C1; beta-propell 100.0 4E-50 1.4E-54 494.9 28.8 324 381-768 84-433 (476)
11 1q47_A Semaphorin 3A; beta pro 100.0 8E-50 2.7E-54 509.5 31.7 346 372-761 87-495 (495)
12 4gz8_A Semaphorin-3A; multi-do 100.0 1.7E-49 5.7E-54 518.1 35.4 360 372-777 95-527 (667)
13 3nvq_A Semaphorin-7A; beta-pro 100.0 5.2E-49 1.8E-53 504.7 27.4 353 371-778 79-477 (590)
14 2r2o_A Plexin-B1; effector dom 100.0 4.8E-35 1.6E-39 306.1 6.4 99 1840-1938 7-132 (138)
15 3nvx_A Protein A39; beta-prope 100.0 2.5E-33 8.6E-38 337.8 17.1 274 369-708 41-345 (383)
16 4e74_A Plexin-A4; RBD, structu 100.0 5.7E-33 2E-37 285.4 4.7 90 1846-1935 2-115 (117)
17 3h6n_A Plexin-D1; structural g 100.0 1.3E-32 4.6E-37 284.1 7.0 96 1862-1978 32-127 (127)
18 4e71_A Plexin-B2, MM1; transme 100.0 1.2E-32 4E-37 280.3 3.9 87 1847-1934 1-110 (111)
19 3kuz_A Plexin-C1; structural g 99.9 3.9E-25 1.3E-29 227.7 5.8 70 1862-1934 54-126 (126)
20 2uzx_B Hepatocyte growth facto 99.7 1.3E-18 4.5E-23 231.8 5.7 158 12-196 541-709 (727)
21 1uad_C RSEC5, exocyst complex 99.6 8.5E-15 2.9E-19 149.5 10.5 93 912-1011 4-97 (99)
22 2cxk_A Camta1, calmodulin bind 99.5 1.6E-14 5.6E-19 145.9 8.6 92 8-101 2-93 (95)
23 2cxk_A Camta1, calmodulin bind 99.3 4.6E-12 1.6E-16 128.2 9.4 73 1010-1088 8-80 (95)
24 1uad_C RSEC5, exocyst complex 99.2 1.7E-11 6E-16 125.1 10.4 88 11-102 6-97 (99)
25 3orj_A Sugar-binding protein; 98.5 1.8E-06 6E-11 105.5 17.8 152 912-1075 9-182 (439)
26 3muj_A Transcription factor CO 98.4 6.7E-07 2.3E-11 94.2 10.2 91 10-103 3-97 (138)
27 3muj_A Transcription factor CO 98.4 1.9E-06 6.4E-11 90.9 11.7 74 1008-1088 5-78 (138)
28 3tc9_A Hypothetical hydrolase; 98.3 1.2E-06 4.2E-11 111.0 11.5 93 11-105 16-112 (430)
29 3tc9_A Hypothetical hydrolase; 98.3 2E-06 6.8E-11 109.1 13.1 72 1008-1086 17-89 (430)
30 4hw6_A Hypothetical protein, I 98.1 7.9E-06 2.7E-10 103.8 13.3 70 1010-1086 21-91 (433)
31 3mlp_A Transcription factor CO 98.1 4.9E-06 1.7E-10 98.2 9.9 90 11-103 230-323 (402)
32 3kya_A Putative phosphatase; s 98.1 9.2E-06 3.1E-10 104.5 11.8 66 1008-1075 17-83 (496)
33 4hw6_A Hypothetical protein, I 98.1 9.8E-06 3.3E-10 102.9 11.6 92 12-105 19-114 (433)
34 3mlp_A Transcription factor CO 98.0 1.3E-05 4.4E-10 94.7 10.4 74 1008-1088 231-304 (402)
35 3hrp_A Uncharacterized protein 98.0 2.1E-05 7.2E-10 98.9 13.2 73 1008-1088 17-94 (409)
36 3hrp_A Uncharacterized protein 98.0 1.4E-05 4.7E-10 100.6 11.4 91 11-105 16-111 (409)
37 3kya_A Putative phosphatase; s 98.0 1.2E-05 4E-10 103.5 9.8 92 12-105 17-110 (496)
38 3oky_A Plexin-A2; transmembran 97.9 1E-05 3.5E-10 107.2 8.3 131 773-915 526-672 (681)
39 3orj_A Sugar-binding protein; 97.7 0.00017 5.9E-09 88.4 13.8 126 26-172 36-172 (439)
40 3ol2_B Plexin-B1; beta-propell 97.5 1.3E-05 4.6E-10 103.4 -0.0 58 1081-1139 461-520 (528)
41 3al9_A Plexin-A2; beta-propell 97.4 1.1E-05 3.8E-10 104.9 -2.5 59 1081-1141 476-534 (539)
42 3nvn_B Plexin-C1; beta-propell 97.2 3.9E-05 1.3E-09 96.3 -0.5 57 1081-1138 416-474 (476)
43 1olz_A Semaphorin 4D; developm 96.8 8.5E-05 2.9E-09 98.8 -2.9 60 1081-1140 477-536 (663)
44 3hm6_X Plexin-B1; structural g 96.6 0.00031 1.1E-08 89.8 0.0 39 342-380 17-55 (644)
45 1wer_A P120GAP; GTPase activat 96.1 0.0077 2.6E-07 74.1 8.3 189 2009-2220 134-329 (334)
46 4fww_A Macrophage-stimulating 95.5 0.002 7E-08 83.8 -0.6 46 1081-1137 479-527 (527)
47 3oky_B Putative uncharacterize 93.7 0.0082 2.8E-07 78.1 -1.4 39 1081-1119 495-534 (565)
48 4gz8_A Semaphorin-3A; multi-do 91.7 0.029 9.8E-07 74.7 -0.5 34 1081-1116 495-529 (667)
49 2yrp_A Nuclear factor of activ 91.6 0.95 3.2E-05 47.2 10.7 86 915-1007 8-107 (114)
50 3nvq_A Semaphorin-7A; beta-pro 90.6 0.031 1E-06 73.2 -1.8 36 1081-1118 444-480 (590)
51 1u36_A DNA-binding, nuclear fa 90.3 1.3 4.6E-05 45.7 10.3 88 915-1007 3-104 (106)
52 2yrp_A Nuclear factor of activ 89.6 1.9 6.4E-05 45.1 10.7 88 11-99 7-109 (114)
53 1ikn_C P50D, protein (NF-kappa 88.9 1.8 6.1E-05 45.6 10.1 88 915-1007 3-104 (119)
54 1ikn_C P50D, protein (NF-kappa 88.7 2.2 7.6E-05 44.9 10.6 86 11-100 2-107 (119)
55 3ig3_A Plxna3 protein; plexin 88.0 0.048 1.6E-06 70.2 -2.7 31 349-379 2-32 (627)
56 3iag_C Recombining binding pro 87.5 2.2 7.7E-05 52.6 11.2 75 1008-1090 328-412 (422)
57 1my7_A NF-kappab P65 (RELA) su 86.2 3.2 0.00011 43.4 10.0 88 12-100 3-102 (114)
58 1u36_A DNA-binding, nuclear fa 85.5 3.5 0.00012 42.6 9.8 85 11-98 2-105 (106)
59 3iag_C Recombining binding pro 85.4 3.2 0.00011 51.3 11.0 88 9-100 325-422 (422)
60 1my7_A NF-kappab P65 (RELA) su 85.2 3.6 0.00012 43.0 9.8 87 916-1007 4-99 (114)
61 3brd_A LIN-12 and GLP-1 phenot 81.7 1.4 4.9E-05 55.2 6.0 88 7-100 371-476 (477)
62 3bxj_A RAS GTPase-activating p 81.6 0.21 7.2E-06 64.4 -1.3 127 2010-2147 292-423 (483)
63 2o61_A Transcription factor P6 80.6 4.7 0.00016 52.0 10.4 88 915-1007 176-272 (540)
64 2o61_A Transcription factor P6 80.4 2.9 0.0001 53.9 8.4 95 10-105 174-280 (540)
65 1nf1_A NF1-333, protein (neuro 79.5 0.21 7.2E-06 61.4 -2.2 179 2010-2212 142-328 (333)
66 1zk9_A Transcription factor RE 79.3 1.3 4.5E-05 45.9 4.0 87 9-98 9-109 (110)
67 1zk9_A Transcription factor RE 79.2 2 6.8E-05 44.6 5.2 88 915-1007 12-108 (110)
68 1oy3_C Transcription factor P6 76.2 8.7 0.0003 41.2 9.1 88 12-100 3-102 (136)
69 1imh_C NF-AT5, tonebp, nuclear 75.9 9.9 0.00034 45.5 10.6 86 915-1007 181-279 (281)
70 1ikn_A P65, protein (NF-kappa- 75.3 9.6 0.00033 45.7 10.2 88 915-1007 175-271 (286)
71 1oy3_C Transcription factor P6 75.3 13 0.00043 40.0 10.0 87 916-1007 4-99 (136)
72 1ikn_A P65, protein (NF-kappa- 74.2 11 0.00036 45.4 10.2 89 11-100 174-274 (286)
73 1nfk_A Protein (nuclear factor 74.0 14 0.00047 45.1 11.3 88 11-100 208-313 (325)
74 1gji_A C-REL protein, C-REL pr 73.4 7.3 0.00025 46.5 8.5 86 11-99 177-275 (275)
75 3brd_A LIN-12 and GLP-1 phenot 72.8 6.6 0.00023 49.4 8.3 52 1009-1066 377-430 (477)
76 1a3q_A Protein (nuclear factor 72.2 13 0.00045 44.5 10.4 88 915-1007 185-284 (285)
77 1imh_C NF-AT5, tonebp, nuclear 71.4 6 0.00021 47.3 7.3 87 11-99 180-281 (281)
78 1gji_A C-REL protein, C-REL pr 70.0 12 0.00042 44.6 9.4 87 915-1007 178-273 (275)
79 1p7h_L Nuclear factor of activ 69.9 14 0.00047 44.4 9.8 86 915-1007 185-284 (286)
80 2ks1_B Epidermal growth factor 68.7 0.54 1.9E-05 41.1 -1.7 31 1605-1635 11-42 (44)
81 3fay_A P195, RAS GTPase-activa 68.2 0.31 1.1E-05 61.2 -4.8 130 2008-2146 178-317 (387)
82 1p7h_L Nuclear factor of activ 67.4 18 0.00062 43.4 10.1 86 11-98 184-285 (286)
83 1nfk_A Protein (nuclear factor 65.1 19 0.00065 43.9 9.9 88 915-1007 209-310 (325)
84 2jwa_A Receptor tyrosine-prote 63.9 0.85 2.9E-05 39.9 -1.4 30 1605-1634 12-41 (44)
85 1a3q_A Protein (nuclear factor 63.5 27 0.00092 41.9 10.6 87 11-98 184-285 (285)
86 2v2t_A RELB, transcription fac 63.4 11 0.00039 45.1 7.4 96 2-98 177-287 (288)
87 2l2t_A Receptor tyrosine-prote 62.6 0.57 1.9E-05 41.0 -2.7 31 1605-1635 10-41 (44)
88 1svc_P Protein (nuclear factor 61.6 21 0.00073 44.0 9.5 86 11-100 248-353 (365)
89 1svc_P Protein (nuclear factor 60.7 26 0.00089 43.3 10.0 88 915-1007 249-350 (365)
90 3bxj_A RAS GTPase-activating p 57.0 7.4 0.00025 50.1 4.8 109 1720-1834 169-280 (483)
91 2v2t_A RELB, transcription fac 49.9 15 0.00053 44.0 5.5 88 915-1007 190-286 (288)
92 1qho_A Alpha-amylase; glycosid 49.9 81 0.0028 42.3 13.2 66 915-994 498-563 (686)
93 1nf1_A NF1-333, protein (neuro 47.2 13 0.00043 45.7 4.4 75 1744-1819 35-111 (333)
94 2l6w_A Beta-type platelet-deri 50.1 4.8 0.00016 34.2 0.0 28 1606-1633 10-37 (39)
95 4b6w_A Tubulin-specific chaper 44.0 19 0.00064 35.7 4.2 54 1862-1934 30-83 (86)
96 3bmv_A Cyclomaltodextrin gluca 36.7 2.1E+02 0.0072 38.3 14.0 66 915-994 498-563 (683)
97 2knc_B Integrin beta-3; transm 35.1 13 0.00043 36.6 1.4 9 1635-1643 40-48 (79)
98 2z5i_A TM, general control pro 35.0 40 0.0014 30.6 4.5 44 1631-1675 6-49 (52)
99 2k9y_A Ephrin type-A receptor 33.1 14 0.00048 31.5 1.2 25 1606-1630 14-39 (41)
100 1qho_A Alpha-amylase; glycosid 31.5 2.3E+02 0.0078 38.0 13.0 64 1008-1075 498-561 (686)
101 1cyg_A Cyclodextrin glucanotra 28.4 3.2E+02 0.011 36.5 13.6 66 915-994 494-559 (680)
102 2daf_A FLJ35834 protein; hypot 27.1 57 0.002 34.3 4.7 48 1862-1935 42-89 (118)
103 3fay_A P195, RAS GTPase-activa 25.5 78 0.0027 39.6 6.5 110 1718-1834 16-136 (387)
104 2k1k_A Ephrin type-A receptor 24.8 10 0.00035 32.3 -1.1 27 1605-1631 11-38 (38)
105 2llm_A Amyloid beta A4 protein 29.6 17 0.00057 31.6 0.0 27 1605-1631 17-43 (43)
106 1d3c_A Cyclodextrin glycosyltr 22.7 4.7E+02 0.016 35.0 13.6 66 915-994 498-566 (686)
107 2klu_A T-cell surface glycopro 21.2 19 0.00066 33.9 -0.1 10 1628-1637 34-43 (70)
108 2bps_A YUKD protein; ubiquitin 21.1 59 0.002 32.1 3.2 63 1851-1931 17-80 (81)
109 2ks1_B Epidermal growth factor 20.5 18 0.00062 31.7 -0.4 7 344-350 34-40 (44)
No 1
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=100.00 E-value=5.5e-220 Score=2016.81 Aligned_cols=583 Identities=62% Similarity=0.987 Sum_probs=526.7
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccChHhHhhhccCCCCCCCcccccCCchhh
Q psy15505 1632 STENTRVLKNMQEQMDILELRVAAECKEAFAELQTEITDLTGDLTSGGIPFLDYRTYAMMILFPNSEHHAVLQFERPELL 1711 (2400)
Q Consensus 1632 s~~~~r~~k~~~~qme~lE~~V~~eck~~FaeLqt~m~dl~~dl~~~giPfldy~~y~~~~~Fp~~~~~p~~~~~~~~~~ 1711 (2400)
|+||+|+|||+|+|||+||++||+|||||||||||||+||++||+++||||||||+|++|+||||.++||+++++++ +.
T Consensus 2 s~~a~r~~kk~~~Qme~LE~~Vr~ecK~aFaELqt~m~dlt~dl~~~giPfLdyk~y~~rv~FP~~~~hp~l~~~~~-~~ 80 (627)
T 3ig3_A 2 TQDADRTLKRLQLQMDNLESRVALECKEAFAELQTDINELTNHMDGVQIPFLDYRTYAVRVLFPGIEAHPVLKELDT-PP 80 (627)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---CCCCBCCHHHHHHHHHSTTCTTCGGGSCCCC-CH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhhhhccccCCCCCcChHHHHHhhcCCCCCCCcccccccc-CC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999988 88
Q ss_pred hHHHHHHHHHhhccCchhHhHHHHhhccCCCCCcccchhhHHHHHHHHHH-------HHHHHHHHHHHHHhcCCCCCccc
Q psy15505 1712 HKEKGLRLFGQLIQNKTFLLLFIRTLESNRYFSMRDRVNVASLIMVTLQN-------ILKTLLAELIEKCMEGKSHPKLL 1784 (2400)
Q Consensus 1712 ~~~~~l~~f~~ll~~k~Fl~~fi~tlE~q~~fs~rdr~~~aSLl~v~l~~-------il~~Ll~~li~~~~~~~~~pkl~ 1784 (2400)
++|+||.||++||+||.||++||||||+||+|++||||+||||||+|||| ||++||.|||+|++++|+|||||
T Consensus 81 ~~e~~l~~f~~LL~nk~FLl~fI~tLE~q~~Fs~rDr~~vASLL~vaL~~kleY~T~Il~~LL~dli~~~v~~k~~PkLm 160 (627)
T 3ig3_A 81 NVEKALRLFGQLLHSRAFLLTFIHTLEAQSSFSMRDRGTVASLTMVALQSRLDYATGLLKQLLADLIEKNLESKNHPKLL 160 (627)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHTTCCSTTT
T ss_pred CHHHHHHHHHHHhcccHHHHHHHHHHhcCCCcchhcchhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHhcccCCcchh
Confidence 99999999999999999999999999999999999999999999999999 99999999999999887899999
Q ss_pred cccchHHHHHHHHHHHHHHHhHHhhhhcCchhHHHHHHHHccccccCcceeecccccccchhhhhcccceeeeEEee---
Q psy15505 1785 LRRTESVAEKMLSSWFTFLLYKFLRECAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLSEEKLIRHAIDFKPMTVY--- 1861 (2400)
Q Consensus 1785 lRrtEsvvEkmltnW~s~~ly~~l~~~ag~pl~~L~~aik~QvekGPvDaitg~ArytL~e~~Llr~~i~~~~l~l~--- 1861 (2400)
|||||||||||||||||||||+||||+||||||||||||||||||||||||||||||||||+|||||+|||++|||+
T Consensus 161 lRRtESVvEKmLtnW~sicLY~~Lke~aGepLf~L~~AiK~Qv~KGPVDaiTg~ArYtLnE~~LLre~ie~~~ltL~v~~ 240 (627)
T 3ig3_A 161 LRRTESVAEKMLTNWFTFLLHKFLKECAGEPLFLLYCAIKQQMEKGPIDAITGEARYSLSEDKLIRQQIDYKTLTLHCVC 240 (627)
T ss_dssp TTSCCCHHHHHHHHHHHHHTHHHHHHTTHHHHHHHHHHHHHHHTTSCBCTTTCCBTTCSSGGGBCCSCCCCCEEEEEEEC
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhcccCChhhhhhhhhccccHhhhhhhhccceeEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ---------------------echhhHHhhhccCCCCCCCCCCCcceEEeeCCCCcEEEecCCCCceeeCceEEEeeccC
Q psy15505 1862 ---------------------VKEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNH 1920 (2400)
Q Consensus 1862 ---------------------vKeKild~~yk~~p~s~rp~~~~~dlew~~~~~~~~~L~d~D~ts~~~~~w~rlNTl~h 1920 (2400)
||||||||||||+|||+||+++++|||||+|++|+++|+|+|.||+++|+|||||||+|
T Consensus 241 ~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~H 320 (627)
T 3ig3_A 241 PESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAH 320 (627)
T ss_dssp TTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTT
T ss_pred cCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEeee---ccccccccCC---Ccccc-----cccccccCCCCCCccCCCCCceeEEeecCCCCCccccCc
Q psy15505 1921 YRVPDGGCLNLVSKQ---YNLSILSEKT---DKYET-----LNLSKMGRNTSPLNRDHDGMAKEWHLVKHHDSDNQKEGE 1989 (2400)
Q Consensus 1921 Y~v~d~a~~~l~~~~---~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~HLvk~~~~~~~~~~~ 1989 (2400)
|+|||||+|+|+||+ |+.+..+..+ .+|++ .+....++++||++++.|+|.|+||||||+|+++.++++
T Consensus 321 Y~V~Dga~v~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~k~~HLVkp~d~~~~~~~~ 400 (627)
T 3ig3_A 321 YQVTDGSLVALVPKQVSAYNMANSFTFTRSLSRYESLLRAASSPDSLRSRAPMLTPDQEAGTKLWHLVRNHDHTDHREGD 400 (627)
T ss_dssp TTCCTTCEEEEEEC----------------------------------------------CCEEESSCCCC---------
T ss_pred cCCCCCceEEEEeccccccccccccccccccccccccccccCCCccccccCcccCccccCCcceEEEecCcccccccccc
Confidence 999999999999999 3332211111 12221 111223567899999999999999999999999988889
Q ss_pred CCcccchhHHhhhhhccccchhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCCCCchhhcccccCCCccee
Q psy15505 1990 RSNKMVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRF 2069 (2400)
Q Consensus 1990 ~~~k~i~EiyltrLls~Kgtlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i~d~~~~h~WKtN~lpLRF 2069 (2400)
|++||||||||||||+|||||||||||||++||+++||++++|+|||||||||||||+||||+||||+|+||||||||||
T Consensus 401 r~~K~i~EIyLTRLLstKgTlQkfVDdlF~sIls~~~~~~~~P~aIKY~FDfLDeqA~kh~I~Dpev~H~WKtNsLpLRF 480 (627)
T 3ig3_A 401 RGSKMVSEIYLTRLLATKGTLQKFVDDLFETVFSTAHRGSALPLAIKYMFDFLDEQADQRQISDPDVRHTWKSNCLPLRF 480 (627)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSGGGCCCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHTTTTH
T ss_pred cccccccHHHHHHHHHhchhHHHHHHHHHHHHhccccCCCCCCccHHHHHHhhhhHHHhcCCCCchhhhhhhhCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccCCCeeeeeccCCCCCcceeeehhhhccccccCCcccCCCCCCccccccccchhHHHHHHHHHHHhhcCCCCCHH
Q psy15505 2070 WVNLIKNPNFVFDIHKSNIVDSCLSVVAQTFMDSCSTSDHRLGKDSPSSKLLYAKDIPAYKEWVERYYSDIKSMQAISDQ 2149 (2400)
Q Consensus 2070 Wvn~ikNp~fvfDi~~s~~vd~~lsviaqtfmdacs~se~~lgkdspsnklLyakdip~yk~~v~~yy~~I~~~p~~s~q 2149 (2400)
||||||||||||||+|+++|||||||||||||||||++||||||||||||||||||||+||+||++||++|++||++|||
T Consensus 481 WVNiiKNP~FvFDi~ks~~vDacLSVIAQtfmDsCS~sehkLgkdSPsNKLLyAKdIp~Yk~~V~~yY~~I~~~p~iSdq 560 (627)
T 3ig3_A 481 WVNVIKNPQFVFDIHKNSITDACLSVVAQTFMDSCSTSEHRLGKDSPSNKLLYAKDIPNYKSWVERYYRDIAKMASISDQ 560 (627)
T ss_dssp HHHHHHCGGGTBSCCCCHHHHHHHHHHHHHHHHHTCCSCCCCCTTSCHHHHHTTTTHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHhhcCcceeeeccCCcccchhHHHHHHHHHhhhcccccccCCCCCccchhccccHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHHhhHHHHHHHhhcChhhHhhhHHHHHHHHHHhccCc
Q psy15505 2150 DMNAMLAEESRLHNSEFSTNCALYELYTYASKYNEQLTVTLEEDEFSQKQRLAYKLEQKSNAGMGK 2215 (2400)
Q Consensus 2150 em~~~l~~~s~~~~~~f~~~~al~ely~y~~~y~~~i~~~L~~d~~~~~~~l~~~l~~v~~~~~~~ 2215 (2400)
|||++|||+|+.|+++||+++||+|||+||.||++||+++||+|+.|||+||++|||||+++||++
T Consensus 561 emn~~Lae~S~~h~~efn~~~AL~ELY~Y~~kY~~qi~~~Le~d~~~~k~~L~~kl~qv~~~~e~~ 626 (627)
T 3ig3_A 561 DMDAYLVEQSRLHANDFNVLSALSELYFYVTKYRQEILTSLDRDASCRKHKLRQKLEQIITLVSSS 626 (627)
T ss_dssp HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHTHHHHHHHHHHSHHHHHTTHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhcChHhhhhhhHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999976
No 2
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=100.00 E-value=1.7e-220 Score=2020.55 Aligned_cols=579 Identities=48% Similarity=0.830 Sum_probs=468.4
Q ss_pred heeeeccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCccChHhHhhhccCCCCCCCcccc
Q psy15505 1625 LIAYRRKSTENTRVLKNMQEQMDILELRVAAECKEAFAELQTEITDLTGDLTSGGIPFLDYRTYAMMILFPNSEHHAVLQ 1704 (2400)
Q Consensus 1625 ~~~yrrks~~~~r~~k~~~~qme~lE~~V~~eck~~FaeLqt~m~dl~~dl~~~giPfldy~~y~~~~~Fp~~~~~p~~~ 1704 (2400)
+++|||||+||+|+|||+|+|||+||++||+|||||||||||||+||++||+++||||||||+|++|+||||.++||+++
T Consensus 17 ~~~yrrKs~~~~r~~kk~~~Qme~LE~~Vr~ecK~aFaELQtdm~dlt~dl~~~giPfLdyk~y~~rv~FP~~~~hp~l~ 96 (644)
T 3hm6_X 17 RGSYRRKSKQALRDYKKVQIQLENLESSVRDRCKKEFTDLMTEMTDLTSDLLGSGIPFLDYKVYAERIFFPGHRESPLHR 96 (644)
T ss_dssp -------------------------------------------------------CCBCCHHHHHHHHHSTTC--CTTSS
T ss_pred EEEEEeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhhhhccccCCCCccchHHHHhhhcCCCCCCCcccc
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCch---hhhHHHHHHHHHhhccCchhHhHHHHhhccCCCCCcccchhhHHHHHHHHHH-------HHHHHHHHHHHHH
Q psy15505 1705 FERPE---LLHKEKGLRLFGQLIQNKTFLLLFIRTLESNRYFSMRDRVNVASLIMVTLQN-------ILKTLLAELIEKC 1774 (2400)
Q Consensus 1705 ~~~~~---~~~~~~~l~~f~~ll~~k~Fl~~fi~tlE~q~~fs~rdr~~~aSLl~v~l~~-------il~~Ll~~li~~~ 1774 (2400)
++++| +.++|+||.||++||+||.||++||||||+||+|++||||+||||||+|||| ||++||.|||+|+
T Consensus 97 ~~~~~~~~~~~~e~~l~~f~~LL~nK~FLl~fI~tLE~q~~Fs~rDr~~vASLL~vaL~~kleY~T~Il~~LL~dLi~~~ 176 (644)
T 3hm6_X 97 DLGVPESRRPTVEQGLGQLSNLLNSKLFLTKFIHTLETQRTFSARDRAYVASLLTVALHGKLEYFTDILRTLLSDLVAQY 176 (644)
T ss_dssp CCCCCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCccccCCHHHHHHHHHHHhcccHHHHHHHHHHhcCcccccccchhhHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 99987 6889999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred hcCCCCCccccccchHHHHHHHHHHHHHHHhHHhhhhcCchhHHHHHHHHccccccCcceeecccccccchhhhhcccce
Q psy15505 1775 MEGKSHPKLLLRRTESVAEKMLSSWFTFLLYKFLRECAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLSEEKLIRHAID 1854 (2400)
Q Consensus 1775 ~~~~~~pkl~lRrtEsvvEkmltnW~s~~ly~~l~~~ag~pl~~L~~aik~QvekGPvDaitg~ArytL~e~~Llr~~i~ 1854 (2400)
++ +||||||||||||||||||||||||||+||||+||||||||||||||||||||||||||||||||||+|||||+||
T Consensus 177 ~~--k~PkLmlRRTESVvEKmLtnWmsicLY~~Lre~aGepLf~L~~AiKqQv~KGPVDaiTg~ArYtLsE~~LLre~ie 254 (644)
T 3hm6_X 177 VA--KNPKLMLRRTETVVEKLLTNWMSICLYTFVRDSVGEPLYMLFRGIKHQVDKGPVDSVTGKAKYTLNDNRLLREDVE 254 (644)
T ss_dssp HT--SCGGGTTCSSCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCBCTTTCCBSSCSCSSSBCCSCCC
T ss_pred hc--cCCccccccchHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhcccCChhhhhhhhhccccHHHhhhhhcc
Confidence 97 5999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEee---------------------------echhhHHhhhccCCCCCCCCCCCcceEEeeCCCCcEEEecCCCCce
Q psy15505 1855 FKPMTVY---------------------------VKEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTK 1907 (2400)
Q Consensus 1855 ~~~l~l~---------------------------vKeKild~~yk~~p~s~rp~~~~~dlew~~~~~~~~~L~d~D~ts~ 1907 (2400)
|++|||+ ||||||||+|||+|||+||+++++|||||+|++|+++|+|+|.||+
T Consensus 255 ~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~ 334 (644)
T 3hm6_X 255 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 334 (644)
T ss_dssp CCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred ceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccce
Confidence 9999876 9999999999999999999999999999999999999999999999
Q ss_pred eeCceEEEeeccCCCCCCCcEEEEEeeeccccccccCCCcccccccccccCCCCCCccCCCCCceeEEeecCCCCCcccc
Q psy15505 1908 VEGEWKKVNTLNHYRVPDGGCLNLVSKQYNLSILSEKTDKYETLNLSKMGRNTSPLNRDHDGMAKEWHLVKHHDSDNQKE 1987 (2400)
Q Consensus 1908 ~~~~w~rlNTl~hY~v~d~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HLvk~~~~~~~~~ 1987 (2400)
++|+|||||||+||+|||||+|+|+||+.+..+.+.. .+..++++||++++.++|.|+||||||+|+.+.++
T Consensus 335 ~~~~wkrLNTL~HY~V~dga~v~L~p~~~~~~~~~~~--------~~~~~~~~p~~~~~~~~g~k~~HLVkp~~~~~~~~ 406 (644)
T 3hm6_X 335 VQGLWRRLNTLQHYKVPDGATVALVPCLTKHVLRENQ--------DYVPGERTPMLEDVDEGGIRPWHLVKPSDEPEPPR 406 (644)
T ss_dssp EETTEEECCBTTTTTCCTTCEEEEEEC----------------------------------CCCEEESSSCCC-------
T ss_pred ecCcceeecchhhcCCCCCcEEEEEeccccccccccc--------cccccCCCCCcCccccCCcceEEEecCcccccccc
Confidence 9999999999999999999999999999654322111 11236788999999999999999999999988777
Q ss_pred CcCCc---------ccchhHHhhhhhccccchhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCCCCchhhc
Q psy15505 1988 GERSN---------KMVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVH 2058 (2400)
Q Consensus 1988 ~~~~~---------k~i~EiyltrLls~Kgtlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i~d~~~~h 2058 (2400)
++|++ ||||||||||||+|||||||||||||++||++++ ++|+|||||||||||||+||||+||||+|
T Consensus 407 ~~r~s~~~~~~~~~K~i~EIyLTRLLstKgTlQkfVDdlF~sIls~~~---~~P~aIKY~FDfLDeqA~kh~I~Dpev~H 483 (644)
T 3hm6_X 407 PRRGSLRGGERERAKAIPEIYLTRLLSMKGTLQKFVDDLFQVILSTSR---PVPLAVKYFFDLLDEQAQQHGISDQDTIH 483 (644)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS---CCCHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred ccccccccccccccccccHHHHHHHHhhchhHHHHHHHHHHHHHcCCC---CCCchHHHHhhhhHhHHHhcCCCChhhhh
Confidence 76544 9999999999999999999999999999999975 89999999999999999999999999999
Q ss_pred ccccCCCcceeeeecccCCCeeeeeccCCCCCcceeeehhhhccccccCCcccCCCCCCccccccccchhHHHHHHHHHH
Q psy15505 2059 TWKSNSLPLRFWVNLIKNPNFVFDIHKSNIVDSCLSVVAQTFMDSCSTSDHRLGKDSPSSKLLYAKDIPAYKEWVERYYS 2138 (2400)
Q Consensus 2059 ~WKtN~lpLRFWvn~ikNp~fvfDi~~s~~vd~~lsviaqtfmdacs~se~~lgkdspsnklLyakdip~yk~~v~~yy~ 2138 (2400)
+||||||||||||||||||||||||+|+++|||||||||||||||||++||||||||||||||||||||+||+||++||+
T Consensus 484 ~WKtNsLpLRFWVNiiKNPqFvFDI~ks~~vDacLSVIAQtfMDscS~sehkLgKdSPsNKLLYAKdIp~Yk~~V~~yY~ 563 (644)
T 3hm6_X 484 IWKTNSLPLRFWINIIKNPQFVFDVQTSDNMDAVLLVIAQTFMDACTLADHKLGRDSPINKLLYARDIPRYKRMVERYYA 563 (644)
T ss_dssp HHHHHHTTTTTHHHHHHCGGGTBSCCCCHHHHHHHHHHHHHHHHHHCCCC------CCHHHHHTTTTHHHHHHHHHHHHH
T ss_pred hhhhcCchHhHHHHhhcCcceEEecCCCcccchHHHHHHHHHHHhccCccccccCCCCchhhhccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHhhHHHHHHHhhcChhhHhhhHHHHHHHHHHhccCce
Q psy15505 2139 DIKSMQAISDQDMNAMLAEESRLHNSEFSTNCALYELYTYASKYNEQLTVTLEEDEFSQKQRLAYKLEQKSNAGMGKQ 2216 (2400)
Q Consensus 2139 ~I~~~p~~s~qem~~~l~~~s~~~~~~f~~~~al~ely~y~~~y~~~i~~~L~~d~~~~~~~l~~~l~~v~~~~~~~~ 2216 (2400)
+|++||++||||||++|||+|+.|+++||+++||+|||+||.||++||+++||+|+.|||++|++|||||+++||+|+
T Consensus 564 ~I~~~p~iSdqemn~~Lae~Sr~h~~efn~~~AL~ELY~Yi~kY~~qi~~~Le~d~~~~~~~l~~kl~qv~~~~e~~~ 641 (644)
T 3hm6_X 564 DIRQTVPASDQEMNSVLAELSWNYSGDLGARVALHELYKYINKYYDQIITALEEDGTAQKMQLGYRLQQIAAAVENKV 641 (644)
T ss_dssp HHHHSCCCCHHHHHHHHHHHHHSSCSCCCHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHHTTHHHHHHHHHHHHC---
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhcChHHHHhhHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999885
No 3
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=100.00 E-value=1.4e-80 Score=824.44 Aligned_cols=575 Identities=25% Similarity=0.421 Sum_probs=347.9
Q ss_pred cCCEEEEecc---ceeEeeecccccc-cccCeeeEEE---------ecCCCCceEEEEcCCCCCCCCceeEEEEEEeeCC
Q psy15505 381 TNPILILCVS---GTCTVRSLQNISD-IVQNVREAVV---------ANNGNASTFAFIAPGPPKPPSTHVMYVGVTFTGN 447 (2400)
Q Consensus 381 ~~~~LivCGS---GiC~lr~Lsni~~-~~~g~~~~va---------snd~~~StVGvI~~g~~~~~~~~~LyVGtt~~~~ 447 (2400)
++++||+||| |+|++|+|.+... ...+..+|++ .+|++++++|+++... ++....+||||+++++.
T Consensus 105 ~~~~L~~CGTafqg~C~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~cpd~~~s~~g~~v~~~-~~~~~~~Lyvgt~~~~~ 183 (727)
T 2uzx_B 105 YDDQLISCGSVNRGTCQRHVFPHNHTADIQSEVHCIFSPQIEEPSQCPDCVVSALGAKVLSS-VKDRFINFFVGNTINSS 183 (727)
T ss_dssp SSSEEEEECSSSSSCEEEEECCSCC-----CEECCCCC----CCSCCSSCCCCTTCEEEEEE-EETTEEEEEEEECCCSC
T ss_pred CCCEEEEEeCCCCCcceeEecCcccccccccccceeeecccCCCCCCCCcccccceeeEEcc-CCCcceEEEEEEeeccc
Confidence 4789999999 9999999974321 1111112222 2356667766544110 00124599999998754
Q ss_pred CCCCCCCCeeEEeeCCCCc-cceecccceeeeeeeeeccccccccceeeEEeeecCCEEEEEEEeeccCCCCcceeeeEE
Q psy15505 448 SPYRSEVPSIASRSLDPER-MFQIADSAVTTGTRMFVNNLARERYIINYVYGFSSEGFSYFLTTQLKSNIGTSFYISKLV 526 (2400)
Q Consensus 448 ~~yr~~~paIS~R~L~~~~-~f~~~~~~v~s~~~i~v~~~~~~~y~~~FV~sF~~g~fVYFlf~e~~~~~~~~~~~SRVa 526 (2400)
...+...|+|++|+|.+.+ +|.+.... .++.+++.++..|.++|||+|.+++||||||+|++.. .++.++||||
T Consensus 184 ~~~~~~~~~is~R~L~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~fV~~f~~~~~vYF~f~e~~~~-~~~~~~SRva 258 (727)
T 2uzx_B 184 YFPDHPLHSISVRRLKETKDGFMFLTDQ----SYIDVLPEFRDSYPIKYVHAFESNNFIYFLTVQRETL-DAQTFHTRII 258 (727)
T ss_dssp C----CCCSEEEEEECTTCSCEECCSGG----GEECCCGGGTTTSCEEEEEEEEETTEEEEEEEEBSST-TCSSBCCEEE
T ss_pred cCCCCCCcceEEccCCCCcccceeeccc----ceEEeccccccccCCCceeeeecCCEEEEEEeecccc-ccccceeEEE
Confidence 1112235789999996543 45542111 1233445677889999999999999999999999765 3578999999
Q ss_pred EEecCCCCcceeeeEEEEccCCC--------CccccceeEEeecCCCCCcccccccCCCCcEEEEEEeccCCCCCCCCCC
Q psy15505 527 RICHDDSNYYSYTEIPITCNSNS--------GKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNR 598 (2400)
Q Consensus 527 RVCk~D~~wtSY~Ea~L~Cs~p~--------~~~yN~LQaa~v~~pG~~LA~~Lgi~~~~~vLyaVFS~~~~~~~~~s~~ 598 (2400)
||||+|.+|+||+||||+|+.|+ +.+||+|||||+++||.+||++||+++++++|||||++++. ++..
T Consensus 259 RvCk~D~~wtSflka~L~Cs~~~~~~~r~~~~~~fn~lQa~~~~~~g~~La~~l~i~~~~~vlygVFs~~~~----~~~~ 334 (727)
T 2uzx_B 259 RFCSINSGLHSYMEMPLECILTEKRKKRSTKKEVFNILQAAYVSKPGAQLARQIGASLNDDILFAVFAQSKP----DSAE 334 (727)
T ss_dssp EECCSSSCCCSCEEEEEEEEEC---------CEEECEEEEEEEECCCHHHHHHHTCCTTCCEEEEEEEEECT----TSSC
T ss_pred EEecCCCCeeEEEEEEEEecCCCcccccccCCcCcCceeEEeecCCchhhhhhccCCCCCCEEEEEEcCCcc----ccCC
Confidence 99999999999999999999875 56899999999999999999999999999999999999874 2445
Q ss_pred CCCCccccccchHHHHHHhhcccceeecCCCCcceeccCCCCCccccccCccCCcccCccc-cccCCccCCccceeEEEE
Q psy15505 599 PKNSSALCIYPLASIRRKFMQNIKTCFSGQGNRGLDFISPAHPCVQTKLQTIGEDFCGLDV-NTPLGGENPIEAVAVLNF 677 (2400)
Q Consensus 599 P~~~SAVCvFsL~dI~~~F~~~~~~Cytg~~~~~lp~~~~~~~C~~~~~~~~~~~~C~~~~-~~PL~~~~pv~~~Pll~~ 677 (2400)
|.++||||+|+|++|+++|++++++... ....|.+ .++++.|.+.+.. .+..+|+..+ .||+|...++.+.|++..
T Consensus 335 ~~~~SAvC~f~l~~I~~~F~~~~~~~~~-~~~~~~~-~p~p~~C~~~~~~-~~~~~~~~~~~~~pl~~~~~l~~~~l~~~ 411 (727)
T 2uzx_B 335 PMDRSAMCAFPIKYVNDFFNKIVNKNNV-RCLQHFY-GPNHEHCFNRTLL-RNSSGCEARRDEYRTEFTTALQRVDLFMG 411 (727)
T ss_dssp EEEEEEEEEEEHHHHHHHHTCC----CE-ECCHHHH-CCC---------------------CCCCEEESSCEEEECTTTT
T ss_pred CCCCcEEEEEEHHHHHHHHhhhHhhcCc-ccccccc-CCCCCcCCCCCcc-cccCcCccccccccccccCcccCccceee
Confidence 6789999999999999999999887221 1223432 2568999987543 3445887654 489998778877777764
Q ss_pred --ec-eeeEEEEeeecceEEEEEecCCCcEEEEEEeCCcceEEEEEEEecCCCeeeeeeEE---eccCCEEEEEecceEE
Q psy15505 678 --SV-RCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSSIAIEYGDVKVDENMTVNADLHL---DSKAMHLYVMTERRVS 751 (2400)
Q Consensus 678 --~~-~lTsVAV~~~~~~TVvFLGTs~G~L~KV~l~~s~~a~~ye~i~v~~gspV~~~L~L---d~~~~~LYV~T~~kV~ 751 (2400)
.+ +||+|||+.+++|||+||||++|+|+||++.+++.......+.+ ...+|.+.... ...+++||++++.+|.
T Consensus 412 ~~~~~~lT~iav~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~-~~~~v~p~~~~~~~l~~~~~l~v~s~~~v~ 490 (727)
T 2uzx_B 412 QFSEVLLTSISTFIKGDLTIANLGTSEGRFMQVVVSRSGPSTPHVNFLL-DSHPVSPEVIVEHTLNQNGYTLVITGKKIT 490 (727)
T ss_dssp TTTTSCEEEEEEEEETTEEEEEEEETTSCEEEEECCSSCCCCCSCCCCC-CSSCCCSCEEEECCTTSCCEEEEEETTEEE
T ss_pred cccceeEEEEEEEecCCEEEEEEEcCCCeEEEEEecCCCCcceeeeEEe-cCcccccchhhhhhcccCCcEEEEeCCeEE
Confidence 23 79999999999999999999999999999865432211111112 12344332211 2346789999888887
Q ss_pred EEEEeccccccccccccccCcccccccCceeeEEEEEEeecccccCceeEEEEeecCceEEEEEEEcCceeEeeceeeee
Q psy15505 752 KVKVQECKVYKTCCLGFQPTIAACVASNSKKAVNVKVHIVGQFIAQTRFVCQFNIEGRVTSVNAQLLGDVIYCDPMEFTY 831 (2400)
Q Consensus 752 kVPv~~Cs~YtsCCl~arPW~~~Cvss~~~~~VtL~v~nLP~~~~~~~~~C~f~i~G~~~~v~a~~~~s~i~C~~~~~~y 831 (2400)
|||++
T Consensus 491 ~vpl~--------------------------------------------------------------------------- 495 (727)
T 2uzx_B 491 KIPLN--------------------------------------------------------------------------- 495 (727)
T ss_dssp EEETT---------------------------------------------------------------------------
T ss_pred EecCC---------------------------------------------------------------------------
Confidence 77653
Q ss_pred cCCceeEEEEEEEEECCCccCCCCCCceEEEeecccCCCCccccccCCCcccceecCCCCCccccccCCCCCCCcccCCC
Q psy15505 832 TSRLSNINASFAVIWGGSKPLDNPDNVHVNIYRCRDLANNCGLCLALPEKYGCGWCQSSKRCEIFEQCDKGLGTWLNRNH 911 (2400)
Q Consensus 832 ~~~~~~~~v~l~v~w~g~~~ID~~~~~~VtLYnCs~~~~dCs~Cl~ad~~y~C~WC~~~~~C~~~~~C~~~~~~w~~~~~ 911 (2400)
.|+|.. +.+|++|+.+++++.|+||. ++|++.++|.. ..|.. .
T Consensus 496 ------------------------------~~~C~~-~~~C~~Cl~a~~~p~C~W~~--~~C~~~~~C~~--~~W~~--~ 538 (727)
T 2uzx_B 496 ------------------------------GLGCRH-FQSCSQCLSAPPFVQCGWCH--DKCVRSEECLS--GTWTQ--Q 538 (727)
T ss_dssp ------------------------------CSCSTT-CCSHHHHHHSCGGGCEEECS--SCEEESTTCSS--SCCBS--S
T ss_pred ------------------------------ccCCCc-CCchhhHhcCCCCccccccc--cCccccccCCc--ccccc--c
Confidence 033544 45788999998899999994 78999999964 46874 3
Q ss_pred CCCCCeEEEEecCcccCCCCcEEEEEeecCCCcc----CCccceEEEeCeeeecccceeecccEEEEEeCCCCCCCCccc
Q psy15505 912 TCPNPEITSFQPKSGPWEGGTNVTINGINLGKTF----KDIYGGVSVAGITCQPYESLYNRTTQIVCQVDGPGTRGSREG 987 (2400)
Q Consensus 912 ~CP~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~----~di~~~V~Vgg~~C~v~~~~y~~st~IvC~tpps~~~~~~~G 987 (2400)
.| .|+|++|+|.+||..|||.|||+|+||+... .|....|+|||.+|.+... +.++++|+|++|++. ...+
T Consensus 539 ~~-~P~ItsI~P~~Gp~~GGT~vTI~G~nf~~~~~~~~~~~~~~V~igg~~C~~~~~-~~s~t~I~C~tp~~~---~~~~ 613 (727)
T 2uzx_B 539 IC-LPAIYKVFPNSAPLEGGTRLTICGWDFGFRRNNKFDLKKTRVLLGNESCTLTLS-ESTMNTLKCTVGPAM---NKHF 613 (727)
T ss_dssp CC-CCEEEEEESSBCCSSCCCEEEEEEECCCEEETTEEESTTCEEEETTEECEECGG-GCCSSEEEEECCC--------C
T ss_pred ee-CCEEeccCCCcccCCCCEEEEEEEecCCCCcccccCCcccEEEECCCccceeee-eccCCEEEEEeCCCC---CCCc
Confidence 57 5999999999999999999999999999754 3445689999999998643 335899999998864 3456
Q ss_pred cEEEEEcc-cccccccceEEeCcEEEEEecCceecCCCcEEEEEeecCCCCCcEEEEECCceeEEEEecCceEEEEcCCC
Q psy15505 988 PVIVKIED-FRGQSKDNYQFVDPVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSAS 1066 (2400)
Q Consensus 988 ~V~V~V~~-~~~~S~~~FtY~~P~ItsIsP~~GP~sGGT~VTItGs~L~~gs~v~V~IG~~~C~i~s~s~t~I~C~Tp~~ 1066 (2400)
.|.|.|.+ ....+...|+|++|+|++|+|.+||.+|||.|||+|+||+.++.++|+||+.+|.+..+++++|+|.||++
T Consensus 614 ~v~V~v~~~~~~~~~~~FtY~~P~I~sisP~~G~~sGGt~ITI~G~nf~~~~~~~V~ig~~~C~i~~~s~t~I~C~tP~~ 693 (727)
T 2uzx_B 614 NMSIIISNGHGTTQYSTFSYVDPVITSISPKYGPMAGGTLLTLTGNYLNSGNSRHISIGGKTCTLKSVSNSILECYTPAQ 693 (727)
T ss_dssp CCEEEEECSSCEEEEECCBCCCC---------------------------------------------------------
T ss_pred cEEEEEeCCcceecccccccccceeEEECCCccccCCCEEEEEEEECCCCCCceEEEECCEEeeEEeecCCEEEEEcCCC
Confidence 78888763 22345678999999999999999999999999999999999988999999999999989999999999999
Q ss_pred CCCceeEeEeeeeEEEECCceeeee
Q psy15505 1067 DRQRNGKLSESNTQHSFTELVQTLT 1091 (2400)
Q Consensus 1067 ~~~~~v~V~~~~v~V~~d~~~~~~~ 1091 (2400)
..++.++|+ |.+||+.+...
T Consensus 694 ~~~g~~~V~-----V~idg~~~~~~ 713 (727)
T 2uzx_B 694 TISTEFAVK-----LKIDLANRETS 713 (727)
T ss_dssp -------------------------
T ss_pred CCCceEEEE-----EEECCEEecCC
Confidence 888888998 99999987654
No 4
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=100.00 E-value=3.3e-79 Score=798.38 Aligned_cols=541 Identities=31% Similarity=0.647 Sum_probs=421.6
Q ss_pred cccCCEEEEecc---ceeEeeeccccc---ccccCeeeEEEecCCCCceEEEEcCCCCCCCCceeEEEEEEeeCCCCCCC
Q psy15505 379 YHTNPILILCVS---GTCTVRSLQNIS---DIVQNVREAVVANNGNASTFAFIAPGPPKPPSTHVMYVGVTFTGNSPYRS 452 (2400)
Q Consensus 379 ~~~~~~LivCGS---GiC~lr~Lsni~---~~~~g~~~~vasnd~~~StVGvI~~g~~~~~~~~~LyVGtt~~~~~~yr~ 452 (2400)
++.+++||+||| |+|++|+|+++. ++.+++.+++++|++++++||+|++++. +..+||||+++++.++|
T Consensus 89 d~~~~~Li~CGS~~qGiC~~~~L~~~~~~~~~~~~~~~~va~~~~~~t~v~vv~~~~~---~~~~l~Vg~~~~~~~~~-- 163 (681)
T 3oky_A 89 DYSENRLLACGSLYQGVCKLLRLDDLFILVEPSHKKEHYLSSVNKTGTMYGVIVRSEG---EDGKLFIGTAVDGKQDY-- 163 (681)
T ss_dssp EGGGTEEEEECSSTTTCEEEEETTTCCEEECCCSSGGGCCCCCCCSSSEEEEEECCTT---CCCEEEEEECCTTCTTT--
T ss_pred ecCCCeEEEeeCCcCcceeeeeccCcceeccCCCCccccccCCCCCCCEEEEEecCCC---CceeEEEEeecCCCCCC--
Confidence 345689999999 999999999973 5667888999999999999999987632 45799999999988777
Q ss_pred CCCeeEEeeCCCCc----cceec--ccceeeeeeeeeccc-cccccceeeEEeeecCCEEEEEEEeeccCC-------CC
Q psy15505 453 EVPSIASRSLDPER----MFQIA--DSAVTTGTRMFVNNL-ARERYIINYVYGFSSEGFSYFLTTQLKSNI-------GT 518 (2400)
Q Consensus 453 ~~paIS~R~L~~~~----~f~~~--~~~v~s~~~i~v~~~-~~~~y~~~FV~sF~~g~fVYFlf~e~~~~~-------~~ 518 (2400)
+|+||+|+|.... +|.|. ...+.+.++++.+.. ...+|.++|||+|++++||||||+|++.+. .+
T Consensus 164 -~p~ISsR~L~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~s~~~~y~i~fV~aF~~~~fVYFlf~q~~~~~~~~~~~~~~ 242 (681)
T 3oky_A 164 -FPTLSSRKLPRDPESSAMLDYELHSDFVSSLIKIPSDTLALVSHFDIFYIYGFASGGFVYFLTVQPETPDGMAINSAGD 242 (681)
T ss_dssp -SCSEEEEECCSSTTCTTTTCBSCCCSSCCSEECCCHHHHHHSTTCCCEEEEEEEETTEEEEEEEEECCC----------
T ss_pred -CceeEEeecccccccccccccccccccccceeeeeccccccccccccceEEEEEcCCEEEEEEEeeccccccccccccc
Confidence 8899999995432 45553 444455566664332 235799999999999999999999998753 34
Q ss_pred cceeeeEEEEecCCCCcceeeeEEEEccCCCCccccceeEEeecCCCCCcccccccCCCCcEEEEEEeccCCCCCCCCCC
Q psy15505 519 SFYISKLVRICHDDSNYYSYTEIPITCNSNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNR 598 (2400)
Q Consensus 519 ~~~~SRVaRVCk~D~~wtSY~Ea~L~Cs~p~~~~yN~LQaa~v~~pG~~LA~~Lgi~~~~~vLyaVFS~~~~~~~~~s~~ 598 (2400)
+.++||||||||+|++||||+||||+|+.+ +.+||+|||||+++||.+||++||+++++++|||||+++++ .+..
T Consensus 243 ~~~~SRVaRvCk~D~~wtSylka~L~C~~~-g~~fn~lQaa~~~~pg~~LA~~lg~~~~~~vlygVFs~~~~----~~~~ 317 (681)
T 3oky_A 243 LFYTSRIVRLCKDDPKFHSYVSLPFGCTRA-GVEYRLLQAAYLAKPGEALAQAFNISSDEDVLFAIFSKGQK----QYHH 317 (681)
T ss_dssp CCEEEEEEEEESSCTTCTTCEEEEEEEEET-TEEECEEEEEEEECCCHHHHHHHTCCTTSCEEEEEEESBSS----CSSS
T ss_pred ceeeEEEEEecCCCCCeeEEEEEEEecCCC-CcCCCceeEEEeccCcchhhhhcccCccCCEEEEEEecCCc----CCCC
Confidence 689999999999999999999999999984 46899999999999999999999999999999999999886 2444
Q ss_pred CCCCccccccchHHHHHHhhcccceeecCCCCcceecc-CCCCCccccccCccCCcccCccccccCCccCCccceeEEEE
Q psy15505 599 PKNSSALCIYPLASIRRKFMQNIKTCFSGQGNRGLDFI-SPAHPCVQTKLQTIGEDFCGLDVNTPLGGENPIEAVAVLNF 677 (2400)
Q Consensus 599 P~~~SAVCvFsL~dI~~~F~~~~~~Cytg~~~~~lp~~-~~~~~C~~~~~~~~~~~~C~~~~~~PL~~~~pv~~~Pll~~ 677 (2400)
|.++||||+|+|++|+++|+++++.||++.+...++|. ++++.|++.+.. +++++|+.+.+||||++.|+.+.|+|+.
T Consensus 318 ~~~~SAVCaF~l~~I~~~f~~~~~~Cy~~~~~~~~~w~~~~~~~C~~~~~~-~~d~~c~~~~~~pL~~~~pi~~~Pll~~ 396 (681)
T 3oky_A 318 PPDDSALCAFPIRAINLQIKERLQSCYHGEGNLELNWLLGKDVQCTKAPVP-IDDNFCGLDINQPLGGSTPVEGLTLYTT 396 (681)
T ss_dssp CCSCEEEEEEEHHHHHHHHHHHHHHHHTTCSBCCCHHHHSSCCBCCCCCCC-CCTTCCCCSSSCSBCCSSCEECEEEEEE
T ss_pred CCCceEEEEEEHHHHHHHHhhhhhhhhcCCCCCCcccccCCCCCCcCCCcC-CCcccccccccccccccccccccceEEe
Confidence 67899999999999999999999999998887777776 789999987543 6777899988999999999999999998
Q ss_pred ec-eeeEEEEeeecceEEEEEecCCCcEEEEEEeCCc-ceEEEEEEEec-CCCeeeeeeEEeccCCEEEEEecceEEEEE
Q psy15505 678 SV-RCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSS-IAIEYGDVKVD-ENMTVNADLHLDSKAMHLYVMTERRVSKVK 754 (2400)
Q Consensus 678 ~~-~lTsVAV~~~~~~TVvFLGTs~G~L~KV~l~~s~-~a~~ye~i~v~-~gspV~~~L~Ld~~~~~LYV~T~~kV~kVP 754 (2400)
.+ +||+|||+..++|||+||||++|+||||++.++. ...+||+++++ .++||.++|.+++++++|||+++++|.|||
T Consensus 397 ~~~~lT~VaV~~~~~~tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qvP 476 (681)
T 3oky_A 397 SRDRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRVP 476 (681)
T ss_dssp SSSCBCCCEEEEETTEEEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEEE
T ss_pred cCcceEEEEEEecCceEEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEEE
Confidence 76 8999999999999999999999999999876543 36789999987 688998899999999999999999999999
Q ss_pred Eecccccccc--ccccccCcccccccCceeeEEEEEEeecccccCceeEEEEeecCceEEEEEEEcCceeEeeceeeeec
Q psy15505 755 VQECKVYKTC--CLGFQPTIAACVASNSKKAVNVKVHIVGQFIAQTRFVCQFNIEGRVTSVNAQLLGDVIYCDPMEFTYT 832 (2400)
Q Consensus 755 v~~Cs~YtsC--Cl~arPW~~~Cvss~~~~~VtL~v~nLP~~~~~~~~~C~f~i~G~~~~v~a~~~~s~i~C~~~~~~y~ 832 (2400)
+++|++|.+| |++||
T Consensus 477 l~~C~~y~sC~~Cl~Ar--------------------------------------------------------------- 493 (681)
T 3oky_A 477 VESCEQYTTCGECLSSG--------------------------------------------------------------- 493 (681)
T ss_dssp SCCGGGCCSHHHHTTSC---------------------------------------------------------------
T ss_pred hhhCcCCCChhHHhcCC---------------------------------------------------------------
Confidence 9999999888 33321
Q ss_pred CCceeEEEEEEEEECCCccCCCCCCceEEEeecccCCCCccccccCCCcccceecCCCCCccccccCCCCCCCcccCCCC
Q psy15505 833 SRLSNINASFAVIWGGSKPLDNPDNVHVNIYRCRDLANNCGLCLALPEKYGCGWCQSSKRCEIFEQCDKGLGTWLNRNHT 912 (2400)
Q Consensus 833 ~~~~~~~v~l~v~w~g~~~ID~~~~~~VtLYnCs~~~~dCs~Cl~ad~~y~C~WC~~~~~C~~~~~C~~~~~~w~~~~~~ 912 (2400)
| -.||||..+++|+.+++|.
T Consensus 494 ----------------------------------------------D--PyCGWc~~~~~Cs~~~~C~------------ 513 (681)
T 3oky_A 494 ----------------------------------------------D--PHCGWCALHNMCSRRDKCQ------------ 513 (681)
T ss_dssp ----------------------------------------------C--TTCEEETTTTEEECGGGST------------
T ss_pred ----------------------------------------------C--CCCceeCCCCeEcChhhcc------------
Confidence 1 1477775556666555552
Q ss_pred CCCCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCeeeecccceeecccEEEEEeCCCCCCCCccccEEEE
Q psy15505 913 CPNPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVCQVDGPGTRGSREGPVIVK 992 (2400)
Q Consensus 913 CP~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~~C~v~~~~y~~st~IvC~tpps~~~~~~~G~V~V~ 992 (2400)
T Consensus 514 -------------------------------------------------------------------------------- 513 (681)
T 3oky_A 514 -------------------------------------------------------------------------------- 513 (681)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcccccccccceEEeCcEEEEEecCceecCCCcEEEEEeecCCCCCcEEEEECCceeEEEEecCceEEEEcCCCCCCcee
Q psy15505 993 IEDFRGQSKDNYQFVDPVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNG 1072 (2400)
Q Consensus 993 V~~~~~~S~~~FtY~~P~ItsIsP~~GP~sGGT~VTItGs~L~~gs~v~V~IG~~~C~i~s~s~t~I~C~Tp~~~~~~~v 1072 (2400)
T Consensus 514 -------------------------------------------------------------------------------- 513 (681)
T 3oky_A 514 -------------------------------------------------------------------------------- 513 (681)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeEeeeeEEEECCceeeeeccccCCCCCCCcCccCCCCcCCCCCCCceeecCCcccccccCCccceEEEEecCccccC-C
Q psy15505 1073 KLSESNTQHSFTELVQTLTCWDCLNRKDPYCGWCSLDNKCSLRSDCQDAAKDPLSWISYKSGRCTTITSVTPNQLQRT-T 1151 (2400)
Q Consensus 1073 ~V~~~~v~V~~d~~~~~~~C~~c~~~~dpycgwC~l~~rCs~~~~cF~Y~~~P~~w~s~~~~~c~~ItsI~P~~g~~s-G 1151 (2400)
.- ..|++|+ .+.+||+.|+ +.|..-+.. .
T Consensus 514 -----------------------------------------------~~-~~~~~~~-~~~~qC~~i~-~~P~~~s~~~~ 543 (681)
T 3oky_A 514 -----------------------------------------------RA-WEANRFA-ASISQCMSLE-VHPNSISVSDH 543 (681)
T ss_dssp -----------------------------------------------TT-TSTTSEE-CSGGGCCEEE-EESSEEETTSC
T ss_pred -----------------------------------------------CC-ccccccc-ccCCccceee-ecCcccccccc
Confidence 11 1122232 1235899996 888876654 4
Q ss_pred CcEEEEccccCCCCCCccccceecccccceeceEEecCCceeeCCCCCCCCceeeeccceeeEEeeccC-CCCCccccee
Q psy15505 1152 ARTLDLAIENLPKLPGQFLCAFTIAEKTLTTEAVKKTNGVGCITPRTDFLPSIPVGQHNITAKLSVRSS-NGPDFVTTKF 1230 (2400)
Q Consensus 1152 Gt~Iti~~~~~p~l~~~~~C~f~~~~~~~~~~~V~Gsnf~~~q~P~~~~~P~~~v~~d~v~v~l~~~~~-~~~~~~~~~~ 1230 (2400)
.+.++|.+.+||.|.++|.|.||++. .+.|.|.|.. ..|.+|+++++|.++.|+|+++|++++++. .+..+++++|
T Consensus 544 ~~~v~l~v~~lP~l~~~~~C~fg~~~--~~~a~~~~~~-v~C~sP~~~~~p~~p~g~d~~~v~l~l~~~~~~~~~~s~~f 620 (681)
T 3oky_A 544 SRLLSLVVNDAPNLSEGIACAFGNLT--EVEGQVSGSQ-VICISPGPKDVPVIPLDQDWFGLELQLRSKETGKIFVSTEF 620 (681)
T ss_dssp SCEEEEEEETCCCCTTCEEEEETTTE--EEECEEETTE-EEEECCCTTTSCCCC--CCEEEEEEEEEETTTCCEEEEEEE
T ss_pred ccEEEEeccCCCCCCCCCEEEcCCcc--cccceecCCe-eEeCCCCHHhCCCCCCCceEEEEEEEEEeccCCCceeEEee
Confidence 66899999999999999999999753 3467677654 789999999999999999999999999875 6888999999
Q ss_pred eeccCCCCcceEEecCCCCCcc-cccccccCCcEEEec
Q psy15505 1231 MFFDCNTYSSCTQCVSSDFPCD-CIKCCQLLGDVIYCD 1267 (2400)
Q Consensus 1231 ~~~~c~~~~~C~~~~~t~~pc~-~~~~~~~~~~~~~C~ 1267 (2400)
.||||+.+..|..|.+++|||+ |+..+.|.++.-.|.
T Consensus 621 ~FYdCs~~~~C~sCvss~w~C~WC~~~h~Cth~~~~c~ 658 (681)
T 3oky_A 621 KFYNCSAHQLCLSCVNSAFRCHWCKYRNLCTHDPTTCS 658 (681)
T ss_dssp EEECCC--------------------------------
T ss_pred EEEcCccCccccccccCCcCCCccCCCceeccCCCCCc
Confidence 9999999999999999999999 999999999988887
No 5
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=100.00 E-value=1.1e-63 Score=642.93 Aligned_cols=377 Identities=32% Similarity=0.672 Sum_probs=317.4
Q ss_pred ccCCEEEEecc---ceeEeeecccccc---cccCeeeEEEecCCCCceEEEEcCCCCCCCCceeEEEEEEeeCCCCCCCC
Q psy15505 380 HTNPILILCVS---GTCTVRSLQNISD---IVQNVREAVVANNGNASTFAFIAPGPPKPPSTHVMYVGVTFTGNSPYRSE 453 (2400)
Q Consensus 380 ~~~~~LivCGS---GiC~lr~Lsni~~---~~~g~~~~vasnd~~~StVGvI~~g~~~~~~~~~LyVGtt~~~~~~yr~~ 453 (2400)
+++++||+||| |+|++|+|+++.. ...++++++++++|.++++|+|++++. .++.||||+++++.++|
T Consensus 91 ~~~~~L~~CGS~~qg~C~~~~l~~~~~~~~~~~~~~~~v~~~~p~~stv~vv~~~~~---~~~~Lyvgt~~~~~~~~--- 164 (539)
T 3al9_A 91 YSENRLLACGSLYQGVCKLLRLDDLFILVEPSHKKEHYLSSVNKTGTMYGVIVRSEG---EDGKLFIGTAVDGKQDY--- 164 (539)
T ss_dssp GGGTEEEEEESSTTTCEEEEETTTCCEEECCCSSGGGCCCCCCCSSSEEEEEECCTT---SCEEEEEEECCTTCTTT---
T ss_pred cCCCeEEEeecCCCCCceeEecccccccccccccCcccccCCCCCCCeEEEEeecCC---CCccEEEEEeccCCCCC---
Confidence 46789999999 9999999999852 334455789999999999999985432 35799999999988767
Q ss_pred CCeeEEeeCCCCc----cceec--ccceeeeeeeeeccc-cccccceeeEEeeecCCEEEEEEEeeccC-------CCCc
Q psy15505 454 VPSIASRSLDPER----MFQIA--DSAVTTGTRMFVNNL-ARERYIINYVYGFSSEGFSYFLTTQLKSN-------IGTS 519 (2400)
Q Consensus 454 ~paIS~R~L~~~~----~f~~~--~~~v~s~~~i~v~~~-~~~~y~~~FV~sF~~g~fVYFlf~e~~~~-------~~~~ 519 (2400)
+|+|++|+|.... +|.+. ........+++.+.. ...+|.++||++|++++||||||+|++.+ ..++
T Consensus 165 ~p~Is~R~L~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~p~~~~~fV~aF~~~~~VYF~~~e~~~~~~~~e~~~~~~ 244 (539)
T 3al9_A 165 FPTLSSRKLPRDPESSAMLDYELHSDFVSSLIKIPSDTLALVSHFDIFYIYGFASGGFVYFLTVQPETPDGMAINSAGDL 244 (539)
T ss_dssp CCSEEEEEECSSTTCTTTTCBSSBCSSCBSEECCCHHHHHHCTTCCCEEEEEEEETTEEEEEEEEECCC----------C
T ss_pred CcceEEeccCCCccccchheeecccccccccccccccccccCCCCCcceEEEEecCCEEEEEEEeccccccccccccccc
Confidence 6899999995422 45542 333333333332111 13368999999999999999999999863 2467
Q ss_pred ceeeeEEEEecCCCCcceeeeEEEEccCCCCccccceeEEeecCCCCCcccccccCCCCcEEEEEEeccCCCCCCCCCCC
Q psy15505 520 FYISKLVRICHDDSNYYSYTEIPITCNSNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRP 599 (2400)
Q Consensus 520 ~~~SRVaRVCk~D~~wtSY~Ea~L~Cs~p~~~~yN~LQaa~v~~pG~~LA~~Lgi~~~~~vLyaVFS~~~~~~~~~s~~P 599 (2400)
.++||||||||+|.+|+||+||||+|+.| +.+||+|||||+++||..||++|++++++++|||||++++. .+..|
T Consensus 245 ~~~SRvaRvCk~D~~wtSflka~L~Cs~~-g~~fn~lqa~~~~~~g~~La~~l~~~~~~~vlygvFs~~~~----~~~~~ 319 (539)
T 3al9_A 245 FYTSRIVRLCKDDPKFHSYVSLPFGCTRA-GVEYRLLQAAYLAKPGEALAQAFNISSDEDVLFAIFSKGQK----QYHHP 319 (539)
T ss_dssp BEEEEEEEEESSCTTCTTCEEEEEEEEET-TEEEEEEEEEEEECCCHHHHHHHTCCTTSCEEEEEEEEBSB----CSSSC
T ss_pred ceeeEEEEEcCCccccceEEEEEeecCCC-CcCcchhheeeeccccccchhhcccCCCCCEEEEEEecCcc----ccCCC
Confidence 89999999999999999999999999985 46899999999999999999999999999999999998654 23346
Q ss_pred CCCccccccchHHHHHHhhcccceeecCCCCcceecc-CCCCCccccccCccCCcccCccccccCCccCCccceeEEEEe
Q psy15505 600 KNSSALCIYPLASIRRKFMQNIKTCFSGQGNRGLDFI-SPAHPCVQTKLQTIGEDFCGLDVNTPLGGENPIEAVAVLNFS 678 (2400)
Q Consensus 600 ~~~SAVCvFsL~dI~~~F~~~~~~Cytg~~~~~lp~~-~~~~~C~~~~~~~~~~~~C~~~~~~PL~~~~pv~~~Pll~~~ 678 (2400)
..+||||+|+|++|+++|++++++||.+++...++|. ++++.|.+.+.. ++++.|+.+..||||++.|+.+.|+|+..
T Consensus 320 ~~~SAvC~f~l~~I~~~F~~~~~~cf~~~~~~~~~w~~~~pg~C~~~~~~-~~d~~~~~~~~~pL~~~~p~~~~pl~~~~ 398 (539)
T 3al9_A 320 PDDSALCAFPIRAINLQIKERLQSCYHGEGNLELNWLLGKDVQCTKAPVP-IDDNFCGLDINQPLGGSTPVEGLTLYTTS 398 (539)
T ss_dssp CSCEEEEEEEHHHHHHHHHHHHHHHHTTCSBCCCHHHHCSCCBCCCCCCC-CCTTCCCCSSSCSBCCSSCEECEEEEEES
T ss_pred CCCCEEEEEEHHHHHHHHHhhHHhhhccCCccccceecCCCCCCcCCCCC-CccccccccccccccccccccccceEEec
Confidence 7899999999999999999999999998877667775 789999987643 56778998888999999999999999987
Q ss_pred c-eeeEEEEeeecceEEEEEecCCCcEEEEEEeCCcce-EEEEEEEecC-CCeeeeeeEEeccCCEEEEEecceEEEEEE
Q psy15505 679 V-RCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSSIA-IEYGDVKVDE-NMTVNADLHLDSKAMHLYVMTERRVSKVKV 755 (2400)
Q Consensus 679 ~-~lTsVAV~~~~~~TVvFLGTs~G~L~KV~l~~s~~a-~~ye~i~v~~-gspV~~~L~Ld~~~~~LYV~T~~kV~kVPv 755 (2400)
+ ++|+|+|+...+|||+||||++|+|+||++.+...+ .+||+++++. ++||.++|.+++++++|||+|+++|+|||+
T Consensus 399 ~~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kvpl 478 (539)
T 3al9_A 399 RDRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRVPV 478 (539)
T ss_dssp SSCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEEES
T ss_pred ccceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEeccccceeeh
Confidence 7 899999999999999999999999999988755444 7899999987 899988999999999999999999999999
Q ss_pred ecccccccc--cccc
Q psy15505 756 QECKVYKTC--CLGF 768 (2400)
Q Consensus 756 ~~Cs~YtsC--Cl~a 768 (2400)
+.|++|.+| |++|
T Consensus 479 ~~C~~y~sC~~Cl~a 493 (539)
T 3al9_A 479 ESCEQYTTCGECLSS 493 (539)
T ss_dssp CCGGGCCSHHHHTTS
T ss_pred hhCcCcCCHHHHhcC
Confidence 999999998 5443
No 6
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=100.00 E-value=2.6e-63 Score=633.37 Aligned_cols=362 Identities=28% Similarity=0.524 Sum_probs=302.3
Q ss_pred CEEEEecc---ceeEeeecccccc-----cccCeeeEEEecCCCCceEEEEcCCCCCCCCceeEEEEEEeeCCCCCCCCC
Q psy15505 383 PILILCVS---GTCTVRSLQNISD-----IVQNVREAVVANNGNASTFAFIAPGPPKPPSTHVMYVGVTFTGNSPYRSEV 454 (2400)
Q Consensus 383 ~~LivCGS---GiC~lr~Lsni~~-----~~~g~~~~vasnd~~~StVGvI~~g~~~~~~~~~LyVGtt~~~~~~yr~~~ 454 (2400)
++||+||| |+|++|+|+++.. ...++..||++|||+++++|+|+.++. +..+||||+++++.+.+ +.+
T Consensus 90 ~~L~~CGSafqg~C~~~~l~~~~~~~~~~~~~~~~~~va~~dp~~s~v~vi~~~~~---~~~~LyvGt~~d~~~~~-~~~ 165 (528)
T 3ol2_B 90 GALVVCGSVHQGVCEQRRLGQLEQLLLRPERPGDTQYVAANDPAVSTVGLVAQGLA---GEPLLFVGRGYTSRGVG-GGI 165 (528)
T ss_dssp SEEEEEESSGGGCEEEEETTEEEEEEECCSSCCGGGCCSCSSTTSCEEEEEEECTT---SCEEEEEEECCCC---C-CCC
T ss_pred CeEEEcccCcCceeEEEecCCcceeeeeccCCCcCCcccCCCCCCCeEEEEeeCCC---CceEEEEEEeccCCCcc-CCC
Confidence 89999999 9999999999842 344556889999999999999997643 45899999999987543 458
Q ss_pred CeeEEeeCCCC---ccceecccceeeeeeeeeccccccccceeeEEeeecCCEEEEEEEeeccCCCCcceeeeEEEEecC
Q psy15505 455 PSIASRSLDPE---RMFQIADSAVTTGTRMFVNNLARERYIINYVYGFSSEGFSYFLTTQLKSNIGTSFYISKLVRICHD 531 (2400)
Q Consensus 455 paIS~R~L~~~---~~f~~~~~~v~s~~~i~v~~~~~~~y~~~FV~sF~~g~fVYFlf~e~~~~~~~~~~~SRVaRVCk~ 531 (2400)
|+|++|+|... .+|++.+. +++++ +++++|+++|||+|.+++||||||+|++.+..++.++|||||||++
T Consensus 166 p~Is~R~L~~~~~~~~F~~~~~-----~~l~t--~~~~~~~~~FV~aF~~~~~VYF~f~e~~~~~~~~~~~sRvaRvCk~ 238 (528)
T 3ol2_B 166 PPITTRALWPPDPQAAFSYEET-----AKLAV--GRLSEYSHHFVSAFARGASAYFLFLRRDLQAQSRAFRAYVSRVCLR 238 (528)
T ss_dssp CSEEEEESSCSSGGGTTCEEEE-----EECCC--SCHHHHCCEEEEEEEETTEEEEEEEEECTTSTTCCEEEEEEEEESS
T ss_pred cceEEeecCCcccccccccccc-----ceeEe--cccccCCCcEEEEEecCCEEEEEEEEEcccccccccccceeeeeCC
Confidence 99999999652 36766433 22333 5677899999999999999999999999876668899999999999
Q ss_pred CCCcceeeeEEEEccCCCCccccceeEEeecCCCCCcccccccCCCCcEEEEEEeccCCCC----CCCCCCCCCCccccc
Q psy15505 532 DSNYYSYTEIPITCNSNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPD----GEGSNRPKNSSALCI 607 (2400)
Q Consensus 532 D~~wtSY~Ea~L~Cs~p~~~~yN~LQaa~v~~pG~~LA~~Lgi~~~~~vLyaVFS~~~~~~----~~~s~~P~~~SAVCv 607 (2400)
|.+|+||+|+||+|++ .+||+|||||+++||.. +++++|||||+++++.- .|.+..|..+||||+
T Consensus 239 D~~w~Sy~k~~L~C~g---~~fn~lQaa~~~~~g~~--------l~~~vly~vFs~~~~~~~~~~~~~~~~p~~~SAVC~ 307 (528)
T 3ol2_B 239 DQHYYSYVELPLACEG---GRYGLIQAAAVATSREV--------AHGEVLFAAFSSAAPPTVGRPPSAAAGASGASALCA 307 (528)
T ss_dssp CSSCTTCEEEEEESTT---TTSCEEEEEEEEEC-----------CCCSEEEEEEECBCCC-----CCBCCGGGCCEEEEE
T ss_pred CCCeeEEEEEEEecCC---CCCCceeEEEEccCCCc--------cCCCEEEEEEecCCCCccccccccccCCCCccEEEE
Confidence 9999999999999996 38999999999998853 26899999999988610 011445678999999
Q ss_pred cchHHHHHHhhcccceeecCCCC-------cceeccCCCCCccccccCccCCc-ccCccc-cccCCccCCccceeEEEEe
Q psy15505 608 YPLASIRRKFMQNIKTCFSGQGN-------RGLDFISPAHPCVQTKLQTIGED-FCGLDV-NTPLGGENPIEAVAVLNFS 678 (2400)
Q Consensus 608 FsL~dI~~~F~~~~~~Cytg~~~-------~~lp~~~~~~~C~~~~~~~~~~~-~C~~~~-~~PL~~~~pv~~~Pll~~~ 678 (2400)
|+|++|+++|++++++||++++. .|+|| ++++.|++.+.. ..++ .|+.++ .||||+..|+.+.|++...
T Consensus 308 f~l~~I~~~f~~~~~~Cy~~~~~~~~~~~~~~~p~-~~~~~C~~~~~~-~~~~f~Cg~~~~~~pL~~~~p~~~~Pll~~~ 385 (528)
T 3ol2_B 308 FPLDEVDRLANRTRDACYTREGRAEDGTEVAYIEY-DVNSDCAQLPVD-TLDAYPCGSDHTPSPMASRVPLEATPILEWP 385 (528)
T ss_dssp EEHHHHHHHHHHHHHHHHHSTTTCSSSCCCEEECT-TCSCCCCCCCTT-HHHHCTTCCTTSCCSEEESSCEECCCSEEET
T ss_pred EEHHHHHHHHhhhhhhhhccccccccCCcccceec-CCCCCCCCCCcc-ccccccccccCcCCcccccccccccceEEec
Confidence 99999999999999999986542 35665 689999987653 3344 499886 6999999999999999987
Q ss_pred c-eeeEEEEeeecceEEEEEecCCCcEEEEEEeCCcceEEEEEEEecCCCeeeeeeEEeccCCEEEEEecceEEEEEEec
Q psy15505 679 V-RCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSSIAIEYGDVKVDENMTVNADLHLDSKAMHLYVMTERRVSKVKVQE 757 (2400)
Q Consensus 679 ~-~lTsVAV~~~~~~TVvFLGTs~G~L~KV~l~~s~~a~~ye~i~v~~gspV~~~L~Ld~~~~~LYV~T~~kV~kVPv~~ 757 (2400)
+ +||+|||+.+.+|||+||||++|+|+||++.++....+||++++..++||.++|.|++++++|||+++++|+|||+++
T Consensus 386 ~~~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~vpl~~ 465 (528)
T 3ol2_B 386 GIQLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKVPVAS 465 (528)
T ss_dssp TCCEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEEESCC
T ss_pred CCceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEEEhhh
Confidence 7 899999999999999999999999999998755556778999998889998899999999999999999999999999
Q ss_pred ccccccc--cccc
Q psy15505 758 CKVYKTC--CLGF 768 (2400)
Q Consensus 758 Cs~YtsC--Cl~a 768 (2400)
|++|.+| |++|
T Consensus 466 C~~y~sC~~Cl~A 478 (528)
T 3ol2_B 466 CAQHLDCASCLAH 478 (528)
T ss_dssp GGGCCSHHHHHHS
T ss_pred CcCcCcHhHHhhC
Confidence 9999998 5543
No 7
>4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens}
Probab=100.00 E-value=3e-56 Score=576.71 Aligned_cols=369 Identities=22% Similarity=0.348 Sum_probs=282.5
Q ss_pred ccccCCEEEEecc---ceeEeeeccccccccc-CeeeEE-------------EecCCCCceEEEEcCCCCCCCCceeEEE
Q psy15505 378 IYHTNPILILCVS---GTCTVRSLQNISDIVQ-NVREAV-------------VANNGNASTFAFIAPGPPKPPSTHVMYV 440 (2400)
Q Consensus 378 ~~~~~~~LivCGS---GiC~lr~Lsni~~~~~-g~~~~v-------------asnd~~~StVGvI~~g~~~~~~~~~LyV 440 (2400)
+.+.+++||+||| |+|++|+|++++.... ....+. +...|..++++++..| ....|||
T Consensus 84 l~~~~~~Li~CGSafqg~C~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g-----~~~~Lyv 158 (527)
T 4fww_A 84 LDPALPALVSCGSSLQGRCFLHDLEPQGTAVHLAAPACLFSAHHNRPDDCPDCVASPLGTRVTVVEQG-----QASYFYV 158 (527)
T ss_dssp EETTTTEEEEEESSGGGCEEEEEEEEETTEEEECCCEECCCSTTCBTTBCTTCCCCTTCEEEEEEEET-----TEEEEEE
T ss_pred EecCCCEEEEEeCCCCceeEEEECCCccccceeccccceeccCCCCCCCCceeecCCCCCceEEEecC-----CCceEEE
Confidence 3467789999999 9999999998743210 111111 1224667888888876 3578999
Q ss_pred EEEeeCCCCCCCCCCeeEEeeCCCCc-cceecccceeeeeeeeeccccccccceeeEEeeecCCEEEEEEEeeccC-CCC
Q psy15505 441 GVTFTGNSPYRSEVPSIASRSLDPER-MFQIADSAVTTGTRMFVNNLARERYIINYVYGFSSEGFSYFLTTQLKSN-IGT 518 (2400)
Q Consensus 441 Gtt~~~~~~yr~~~paIS~R~L~~~~-~f~~~~~~v~s~~~i~v~~~~~~~y~~~FV~sF~~g~fVYFlf~e~~~~-~~~ 518 (2400)
|+++++....+...++|++|.|.... .+. .... . +.++..+++.|+++|||+|++++||||||+|++.+ ..+
T Consensus 159 gt~~~~~~~~~~~~rsis~r~l~~~~~~~~--~~~~-~---~~~~~~~~~~~~~~fV~~F~~~~~vYF~f~e~~~~~~~~ 232 (527)
T 4fww_A 159 ASSLDAAVAASFSPRSVSIRRLKADASGFA--PGFV-A---LSVLPKHLVSYSIEYVHSFHTGAFVYFLTVQPASVTDDP 232 (527)
T ss_dssp EECCCHHHHSSSCCCSEEEEEBCTTSSCBC--TTCE-E---ECCCHHHHTTCCCEEEEEEEETTEEEEEEEEESSTTSCT
T ss_pred eeecccCCCCCccccccccccccccccccc--ccee-E---EEecccccccCCCceEeeeecCCEEEEEEEEEccccCCC
Confidence 99988752222234679999995433 222 1111 1 22333677789999999999999999999999875 357
Q ss_pred cceeeeEEEEecCCCCcceeeeEEEEccCCC----------CccccceeEEeecCCCCCcccccccCCCCcEEEEEEecc
Q psy15505 519 SFYISKLVRICHDDSNYYSYTEIPITCNSNS----------GKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAES 588 (2400)
Q Consensus 519 ~~~~SRVaRVCk~D~~wtSY~Ea~L~Cs~p~----------~~~yN~LQaa~v~~pG~~LA~~Lgi~~~~~vLyaVFS~~ 588 (2400)
+.++||||||||+|.+|+||+|++|+|+.++ +.+||+|||||+++||.+||++|++.+++++|||||+++
T Consensus 233 ~~~~SRvaRVCk~D~~~~Sy~e~~L~C~~~~~~~~~~~~~~~~~yn~lQ~a~~~~~g~~La~~l~~~~~~~vly~vFs~~ 312 (527)
T 4fww_A 233 SALHTRLARLSATEPELGDYRELVLDCRFAPKLVPRGSPEGGQPYPVLQVAHSAPVGAQLATELSIAEGQEVLFGVFVTG 312 (527)
T ss_dssp TSEEEEEEEEESSSSCCTTCEEEEEEEEECC----------CEEECEEEEEEEEECCHHHHHHHTSCTTCEEEEEEEECC
T ss_pred cccceeeeEEcccCCCcceEEEEEEEeeccccccccccccCCcccceeeeEeecCccchhhhhcccCCCCCEEEEEEeCc
Confidence 8899999999999999999999999998753 356999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCccccccchHHHHHHhhcccceeecCCCCcce----eccCCCCCccccccCccCCcccCccccccCC
Q psy15505 589 EAPDGEGSNRPKNSSALCIYPLASIRRKFMQNIKTCFSGQGNRGL----DFISPAHPCVQTKLQTIGEDFCGLDVNTPLG 664 (2400)
Q Consensus 589 ~~~~~~~s~~P~~~SAVCvFsL~dI~~~F~~~~~~Cytg~~~~~l----p~~~~~~~C~~~~~~~~~~~~C~~~~~~PL~ 664 (2400)
++ .+..|..+||||+|+|++|+++|++++++|+.+....+. .+.++++.|.+.+........+.. ..||||
T Consensus 313 ~~----~~~~~~~~SAvC~f~m~~I~~~F~~~~~~c~~~~~~~~~~~~~~~~~~p~~c~~~~~~~~~~~~~~~-~~~pl~ 387 (527)
T 4fww_A 313 KD----GGPGVGPNSVVCAFPIDLLDTLIDEGVERCCESPVHPGLRRGLDFFQSPSFCPNPPGLEALSPNTSC-RHFPLL 387 (527)
T ss_dssp C--------CCSCSCEEEEEEHHHHHHHHHHHHHHHHSSSCCTTCBCCCTTTSCCCBTTSCTTCSSCCTTCCG-GGSCEE
T ss_pred cC----CCCCCCCccEEEEEEHHHHHHHHHhhhhhcccCCCCCCceeccCCCCCCCcCcCCCcccccccCccc-ccCCcc
Confidence 87 355667889999999999999999999999987665333 234789999876543222222222 258998
Q ss_pred ccCCccceeEEEEe--c-eeeEEEEeeecceEEEEEecCCCcEEEEEEeCCcc-eEEEEEEEec-CCCeeeeeeEEeccC
Q psy15505 665 GENPIEAVAVLNFS--V-RCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSSI-AIEYGDVKVD-ENMTVNADLHLDSKA 739 (2400)
Q Consensus 665 ~~~pv~~~Pll~~~--~-~lTsVAV~~~~~~TVvFLGTs~G~L~KV~l~~s~~-a~~ye~i~v~-~gspV~~~L~Ld~~~ 739 (2400)
...++.+.|++... + ++|+|||+...+|||+||||++|+|+||++.++.. ...++++.++ .++||.++|.+ .+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~T~iav~~~~~~tV~FlGT~~G~l~Kv~~~~~~~~~~~~~~~~~~~~~~pi~~~l~~--~~ 465 (527)
T 4fww_A 388 VSSSFSRVDLFNGLLGPVQVTALYVTRLDNVTVAHMGTMDGRILQVELVRSLNYLLYVSNFSLGDSGQPVQRDVSR--LG 465 (527)
T ss_dssp CSSCEEEECTTTTTTTTCCEEEEEEEEETTEEEEEEEETTSEEEEEECSCCSSCCCEEEEEEETTSCCCBCSCCEE--ET
T ss_pred ccCcccCcccccccCCceEEEEEEEeccCCEEEEEEECCCCeEEEEEEcCCCCcceEEEEEEecCCCceeehhccc--CC
Confidence 77666666665433 2 79999999999999999999999999999865443 3456777775 47899866555 56
Q ss_pred CEEEEEecceEEEEEEe--cccccccc
Q psy15505 740 MHLYVMTERRVSKVKVQ--ECKVYKTC 764 (2400)
Q Consensus 740 ~~LYV~T~~kV~kVPv~--~Cs~YtsC 764 (2400)
++|||+|+++|.|||++ +|++|++|
T Consensus 466 ~~Lyv~s~~~V~~vpv~~~~C~~y~sC 492 (527)
T 4fww_A 466 DHLLFASGDQVFQVPIQGPGCRHFLTC 492 (527)
T ss_dssp TEEEEEETTEEEEEETTCSCGGGCCSH
T ss_pred CEEEEEECCEEEEEeccccCCCCCCCH
Confidence 79999999999999996 69999888
No 8
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=100.00 E-value=2.4e-52 Score=532.43 Aligned_cols=381 Identities=17% Similarity=0.274 Sum_probs=298.4
Q ss_pred cccchhhhhhhhcccccccccccccccccCccc----ccCCEEEEecc----ceeEeeeccccc---ccccCeeeEEEec
Q psy15505 347 RKSTENTRVLKNMQEQMDILELRVAAECKAPIY----HTNPILILCVS----GTCTVRSLQNIS---DIVQNVREAVVAN 415 (2400)
Q Consensus 347 RKs~eaer~~~k~~~Qme~lE~sV~dEC~~~~~----~~~~~LivCGS----GiC~lr~Lsni~---~~~~g~~~~vasn 415 (2400)
+-.|++..+.++.+...+.-| +||.|.+. .++++|++||| |.|..++++++. +...|..+|++
T Consensus 79 ~i~W~~~~~~~~~C~~kGK~~----~eC~NyIrvL~~~n~~~L~~CGTnAf~P~C~~~~~~~l~~~~~~~~G~~~CPy-- 152 (565)
T 3oky_B 79 KLTWKSRQADVDTCRMKGKHK----DECHNFIKVLLKKNDDTLFVCGTNAFNPSCRNYRVDTLETFGDEFSGMARCPY-- 152 (565)
T ss_dssp EEECCCCHHHHHHHHHTTCCT----TTSSCBEEEEEEEETTEEEEEECTTTSCEEEEEETTTCCBCSCCEECTTTSCS--
T ss_pred eEEEeCCHHHhhhhhhcCCCh----HHcCceEEEEeecCCCEEEEeccCCCCcceEEEecccccccccccCCceeCCC--
Confidence 344555555555555555533 68999764 56789999999 999999998874 34577888999
Q ss_pred CCCCceEEEEcCCCCCCCCceeEEEEEEeeCCCCCCCCCCeeEEeeCCCCccceecccceeeeeeeeeccccccccceee
Q psy15505 416 NGNASTFAFIAPGPPKPPSTHVMYVGVTFTGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVNNLARERYIINY 495 (2400)
Q Consensus 416 d~~~StVGvI~~g~~~~~~~~~LyVGtt~~~~~~yr~~~paIS~R~L~~~~~f~~~~~~v~s~~~i~v~~~~~~~y~~~F 495 (2400)
||..+.+++++.| .||.|+..++.+ .. ++.+|++.+.+.+ .+ .. ....+..+++|
T Consensus 153 dP~~~~tal~~~g--------~LYsgt~~dF~g----~d-~~I~Rs~g~~~~l-------RT---~~--~~s~wLneP~F 207 (565)
T 3oky_B 153 DAKHANIALFADG--------KLYSATVTDFLA----ID-AVIYRSLGDSPTL-------RT---VK--HDSKWLKEPYF 207 (565)
T ss_dssp STTSCCEEEEETT--------EEEEEEESSTTC----CC-EEEEEECTTSCCE-------EC---CT--TCTTTCSSCEE
T ss_pred CCCCCceEEEECC--------EEEEEEecccCC----CC-ceEEecCCCCCce-------ee---ec--cchhhhcCCce
Confidence 7877778998865 899999987653 23 4667999654322 11 00 01223457999
Q ss_pred EEeeecCCEEEEEEEeeccC--CCCcceeeeEEEEecCCC---------CcceeeeEEEEccCCCC--ccccceeEEeec
Q psy15505 496 VYGFSSEGFSYFLTTQLKSN--IGTSFYISKLVRICHDDS---------NYYSYTEIPITCNSNSG--KQYNLVQAGFVG 562 (2400)
Q Consensus 496 V~sF~~g~fVYFlf~e~~~~--~~~~~~~SRVaRVCk~D~---------~wtSY~Ea~L~Cs~p~~--~~yN~LQaa~v~ 562 (2400)
|++|..++||||||+|++.+ ..++.+++|||||||+|. +||||+||||+|+.|++ ++||+|||++..
T Consensus 208 V~a~~~~d~VYFfF~E~a~E~~~~~k~~~sRVARVCk~D~GG~~r~L~~~WtSFlKarL~Cs~pg~~~~~fn~lQav~~~ 287 (565)
T 3oky_B 208 VQAVDYGDYIYFFFREIAVEYNTMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPGDSHFYFNILQAVTDV 287 (565)
T ss_dssp EEEEEETTEEEEEEEEECGGGSSSSCCEEEEEEEEETTCCCCCSSSSTTBCSSCEEEEBCCEECSSSCEECCEEEEECCC
T ss_pred eEEEeeCCEEEEEEccccccccccCcceeeeEeeeCCCCCCCcccccccceeEEEEEEEEcCCCCCCCccccceeeeeee
Confidence 99999999999999999875 467889999999999997 89999999999999864 689999999854
Q ss_pred CCCCCcccccccCCCCcEEEEEEeccCCCCCCCCCCCCCCccccccchHHHHHHhhcccceeecCCCCcceecc------
Q psy15505 563 KPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRPKNSSALCIYPLASIRRKFMQNIKTCFSGQGNRGLDFI------ 636 (2400)
Q Consensus 563 ~pG~~LA~~Lgi~~~~~vLyaVFS~~~~~~~~~s~~P~~~SAVCvFsL~dI~~~F~~~~~~Cytg~~~~~lp~~------ 636 (2400)
.. ..++++|||||+++|+ + ..+||||+|+|++|+++|+++++.+ .+....|+|+.
T Consensus 288 ~~----------~~~~~~~YgvFtt~~~-----~---~~~SAVC~y~l~dI~~~F~G~fk~~-~~~~~~W~~~~~~~vP~ 348 (565)
T 3oky_B 288 IR----------INGRDVVLATFSTPYN-----S---IPGSAVCAYDMLDIANVFTGRFKEQ-KSPDSTWTPVPDERVPK 348 (565)
T ss_dssp EE----------ETTEEEEEEEEECCSS-----S---SCCEEEEEEEHHHHHHHTTSCBEEE-SSTTSCEEECCGGGSCS
T ss_pred ec----------cCCCCEEEEEEccCCC-----C---CCccEEeeccHHHHHHHhcCCcccc-cCCCcceEecCCCcCCC
Confidence 21 1246899999999987 2 4689999999999999999999885 45567899873
Q ss_pred CCCCCccccccC-cc--CCcccCccc----cccCCc--cCCccceeEEEEec---eeeEEEEeeec----ceEEEEEecC
Q psy15505 637 SPAHPCVQTKLQ-TI--GEDFCGLDV----NTPLGG--ENPIEAVAVLNFSV---RCTAVAATSTG----DYTVVFIGTD 700 (2400)
Q Consensus 637 ~~~~~C~~~~~~-~~--~~~~C~~~~----~~PL~~--~~pv~~~Pll~~~~---~lTsVAV~~~~----~~TVvFLGTs 700 (2400)
+||+.|++.... +. +.++.+..+ .||||. +.|+.++|++++.+ +||+|||+.+. +|||+||||+
T Consensus 349 PrPg~C~~~~~~~~~~ss~~lpd~~L~fik~hPLM~~~V~p~~~~Pll~~~~~~y~lT~IaVd~~~g~~~~ytVlFLGTd 428 (565)
T 3oky_B 349 PRPGCCAGSSSLEKYATSNEFPDDTLNFIKTHPLMDEAVPSIINRPWFLRTMVRYRLTKIAVDNAAGPYQNHTVVFLGSE 428 (565)
T ss_dssp SCTTCCTTSSTTTTCSSGGGCCHHHHHHHHHCCBBSSCBCCGGGSCSEEECSSSSCEEEEEEEEEETTTTCEEEEEEEET
T ss_pred CCCCcccCCCccccccccccCCHHHhhHhhhCcccccCCCCccceeEEEEcCCccceEEEEEEEEecCCCceEEEEEECC
Confidence 589999986421 11 112222222 499997 46899999999875 57999999974 5999999999
Q ss_pred CCcEEEEEEeCC-----cceEEEEEEEecC----------CCeeeeeeEEeccCCEEEEEecceEEEEEEecccccccc-
Q psy15505 701 TGHLKKVVVETS-----SIAIEYGDVKVDE----------NMTVNADLHLDSKAMHLYVMTERRVSKVKVQECKVYKTC- 764 (2400)
Q Consensus 701 ~G~L~KV~l~~s-----~~a~~ye~i~v~~----------gspV~~~L~Ld~~~~~LYV~T~~kV~kVPv~~Cs~YtsC- 764 (2400)
+|+||||++..+ ....++|+++++. ++||. +|.|++++++|||+++++|+|||+++|++|.+|
T Consensus 429 ~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~-~L~ls~~~~~LYV~s~~~V~qVPl~~C~~y~sC~ 507 (565)
T 3oky_B 429 KGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIM-GMQLDRASGSLYVAFSTCVIKVPLGRCERHGKCK 507 (565)
T ss_dssp TSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCC-EEEEEGGGTEEEEECSSCEEEEESCCCGGGTTCH
T ss_pred CCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceE-EEEEcCCCCEEEEEecCeEEEeehhhCcCcccch
Confidence 999999998642 2457889999874 57887 999999999999999999999999999999999
Q ss_pred --ccccc-c---Cc---cccccc
Q psy15505 765 --CLGFQ-P---TI---AACVAS 778 (2400)
Q Consensus 765 --Cl~ar-P---W~---~~Cvss 778 (2400)
|++|| | |+ .+|+..
T Consensus 508 ~~Cl~ArDPYCGW~~~~~~C~~~ 530 (565)
T 3oky_B 508 KTCIASRDPYCGWVRESGSCAHL 530 (565)
T ss_dssp HHHHHTCCTTEEEETTTTEEEEC
T ss_pred hhhhhcCCCCCcccCCCCceeec
Confidence 99999 8 86 578754
No 9
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=100.00 E-value=1.5e-51 Score=540.97 Aligned_cols=348 Identities=19% Similarity=0.292 Sum_probs=269.7
Q ss_pred ccccCccc----ccCCEEEEecc----ceeEeeecccccc---cccCeeeEEEecCCCCceEEEEcCCCCCCCCceeEEE
Q psy15505 372 AECKAPIY----HTNPILILCVS----GTCTVRSLQNISD---IVQNVREAVVANNGNASTFAFIAPGPPKPPSTHVMYV 440 (2400)
Q Consensus 372 dEC~~~~~----~~~~~LivCGS----GiC~lr~Lsni~~---~~~g~~~~vasnd~~~StVGvI~~g~~~~~~~~~LyV 440 (2400)
.+|.|.+. .++++||+||| |+|++++|.++.. ...+...|+ +||+++++|+|+.| .|||
T Consensus 85 ~dc~N~i~vL~~~~~~~L~~CGTna~qp~C~~~~l~~~~~~~~~~~g~~~cp--~dp~~~~~~vi~~g--------~Ly~ 154 (663)
T 1olz_A 85 TECLNYIRVLQPLSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRCP--FDPAHSYTSVMVDG--------ELYS 154 (663)
T ss_dssp TTSSCBEEEEEECSSSEEEEEECTTTSCEEEEEETTTTEECCCCEECTTTSC--SSTTSCEEEEEETT--------EEEE
T ss_pred cccceeEEEEEEcCCCeEEEeeccCCCcEEEEeecCccccccccccCCccCC--CCCCCCeeEEEeCC--------eEEE
Confidence 46888642 45789999999 9999999999853 334444444 49999999999854 7999
Q ss_pred EEEeeCCCCCCCCCCeeEEeeCCCCcc-ceecccceeeeeeeeeccccccccceeeEEe----------eecCCEEEEEE
Q psy15505 441 GVTFTGNSPYRSEVPSIASRSLDPERM-FQIADSAVTTGTRMFVNNLARERYIINYVYG----------FSSEGFSYFLT 509 (2400)
Q Consensus 441 Gtt~~~~~~yr~~~paIS~R~L~~~~~-f~~~~~~v~s~~~i~v~~~~~~~y~~~FV~s----------F~~g~fVYFlf 509 (2400)
|+++++. +..|+|+ |++..... ..++..+ ...++||++ |.+++||||||
T Consensus 155 gt~~~~~----g~~p~i~-Rs~~~~~lrTe~~~~~---------------L~~p~FV~s~~i~~~~~~~~~~~~~VYFff 214 (663)
T 1olz_A 155 GTSYNFL----GSEPIIS-RNSSHSPLRTEYAIPW---------------LNEPSFVFADVIRKSPDSPDGEDDRVYFFF 214 (663)
T ss_dssp EEESSTT----SCSEEEE-EECSSCCBCCCSSTTT---------------CSSCEEEEEEEECCCC----CCCCEEEEEE
T ss_pred EEecccc----CCCceEE-eccccccccccchhhh---------------ccCCceeEeeeeeccccccccCCCEEEEEE
Confidence 9998764 3356666 76632111 0111111 123455555 68899999999
Q ss_pred EeeccCC--CCcceeeeEEEEecCC--------CCcceeeeEEEEccCCC-CccccceeEEeecCCCCCcccccccCCCC
Q psy15505 510 TQLKSNI--GTSFYISKLVRICHDD--------SNYYSYTEIPITCNSNS-GKQYNLVQAGFVGKPGSDLAGDLGITAQD 578 (2400)
Q Consensus 510 ~e~~~~~--~~~~~~SRVaRVCk~D--------~~wtSY~Ea~L~Cs~p~-~~~yN~LQaa~v~~pG~~LA~~Lgi~~~~ 578 (2400)
+|++.+. .++.++||||||||+| ++|+||+||||+|+.|+ +++||+|||||++++| ++++
T Consensus 215 ~e~~~e~~~~~k~~~SRVaRvCk~D~GG~~~l~~~wtSflka~L~Cs~~~~~~~fn~lq~~~~~~~~---------~~~~ 285 (663)
T 1olz_A 215 TEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGLVFNVLRDVFVLRSP---------GLKV 285 (663)
T ss_dssp EEECSSCBCSSCCEEEEEEEEETTCCCCSSSSTTSCSSCEEEEECCEEGGGTEECCEEEEEEEECCT---------TCSS
T ss_pred eeccccccccCcceeeEEEEECCCCCCcccccccccceEEEEeEEecCCCCCcccCceeeEEEeccC---------CCCC
Confidence 9998864 5788999999999999 79999999999999874 5789999999999887 3678
Q ss_pred cEEEEEEeccCCCCCCCCCCCCCCccccccchHHHHHHhhc-ccceeec--CCCCcceecc-----CCCCCcccccc---
Q psy15505 579 DVLFAVFAESEAPDGEGSNRPKNSSALCIYPLASIRRKFMQ-NIKTCFS--GQGNRGLDFI-----SPAHPCVQTKL--- 647 (2400)
Q Consensus 579 ~vLyaVFS~~~~~~~~~s~~P~~~SAVCvFsL~dI~~~F~~-~~~~Cyt--g~~~~~lp~~-----~~~~~C~~~~~--- 647 (2400)
++|||||+++++ |..+||||+|+|++|+++|++ .++.+.+ +....|++|. +||+.|.+...
T Consensus 286 ~vlygvFst~~~--------~~~~SAvC~f~l~~I~~~F~~g~~~~~~~~~~~~~~w~~~~~~vp~prpg~C~~~~~~~~ 357 (663)
T 1olz_A 286 PVFYALFTPQLN--------NVGLSAVCAYNLSTAEEVFSHGKYMQSTTVEQSHTKWVRYNGPVPKPRPGACIDSEARAA 357 (663)
T ss_dssp CEEEEEEECSSS--------CSSEEEEEEEEHHHHHHHHHHSCBEEEECCSTTCCEEEECCSCCCSSCTTCCCCHHHHTT
T ss_pred CEEEEEEccCCC--------CCCCcEEEEEEHHHHHHHHhhccccccccccCCCceeEecCCCCCCCCCccCCCcccccc
Confidence 999999999876 357899999999999999994 4444322 2345788875 47899987521
Q ss_pred -----CccCCcccCccccccCC--ccCCccceeEEEEec-eeeEEEEeee-----cceEEEEEecCCCcEEEEEEeCCcc
Q psy15505 648 -----QTIGEDFCGLDVNTPLG--GENPIEAVAVLNFSV-RCTAVAATST-----GDYTVVFIGTDTGHLKKVVVETSSI 714 (2400)
Q Consensus 648 -----~~~~~~~C~~~~~~PL~--~~~pv~~~Pll~~~~-~lTsVAV~~~-----~~~TVvFLGTs~G~L~KV~l~~s~~ 714 (2400)
..+++..+.....|||| ++.|+.+.|+|...+ ++|+|||+.+ .+|||+||||++|+|+||++.++ .
T Consensus 358 ~~~ss~~lpd~~l~f~~~hpLm~~~v~pi~~~pll~~~~~~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~-~ 436 (663)
T 1olz_A 358 NYTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPRLIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEH-A 436 (663)
T ss_dssp TCCSGGGSCHHHHHHHHHCCEEEEEECCGGGSCSEEEESCCEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSS-S
T ss_pred cccccccCCcccccccccCccccccccccCCcceEEeCCCceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCC-C
Confidence 11222223333369998 578999999999887 8999999987 67999999999999999987654 3
Q ss_pred eEEEEEEEecC-CCeeeeeeEEeccC--CEEEEEecceEEEEEEecccccccc--cccc
Q psy15505 715 AIEYGDVKVDE-NMTVNADLHLDSKA--MHLYVMTERRVSKVKVQECKVYKTC--CLGF 768 (2400)
Q Consensus 715 a~~ye~i~v~~-gspV~~~L~Ld~~~--~~LYV~T~~kV~kVPv~~Cs~YtsC--Cl~a 768 (2400)
..++|++++++ ++||. +|.|++.+ ++|||+|+++|.|||+++|++|.+| |++|
T Consensus 437 ~~~~ee~~~~~~~~pI~-~l~l~~~~~~~~Lyv~s~~~V~~vpl~~C~~y~sC~~Cl~a 494 (663)
T 1olz_A 437 VHIIEETQLFQDFEPVQ-TLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCEDCVLA 494 (663)
T ss_dssp EEEEEEEECCTTCCCCC-EEEECCSSSSCEEEEECSSCEEEEESCCGGGCCSHHHHHHT
T ss_pred ceEEEEecccCCCCcce-eeEeccCCCccEEEEEEcCeEEEEEchhCCCCCCHHHHhcC
Confidence 57788888764 78997 89999888 9999999999999999999999998 5544
No 10
>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB: 3nvq_B*
Probab=100.00 E-value=4e-50 Score=494.86 Aligned_cols=324 Identities=22% Similarity=0.314 Sum_probs=259.4
Q ss_pred cCCEEEEecc----ceeEeeecccccccccCeeeEEEecCCCCceEEEEcCCCCCCCCceeEEEEEEee-----------
Q psy15505 381 TNPILILCVS----GTCTVRSLQNISDIVQNVREAVVANNGNASTFAFIAPGPPKPPSTHVMYVGVTFT----------- 445 (2400)
Q Consensus 381 ~~~~LivCGS----GiC~lr~Lsni~~~~~g~~~~vasnd~~~StVGvI~~g~~~~~~~~~LyVGtt~~----------- 445 (2400)
..++||+||| |+|++|.|+||........+.|++++|++||+|+|.++++ .++||||++++
T Consensus 84 ~~~~Li~cGs~~q~g~C~~r~l~~l~~~~~~~~~~v~~~~p~~st~~~v~~~~~----~~~lfvg~~~~~~~~~~~~~~~ 159 (476)
T 3nvn_B 84 GLGGLLLTGWTFDRGACEVRPLGNLSRNSLRNGTEVVSCHPQGSTAGVVYRAGR----NNRWYLAVAATYVLPEPETASR 159 (476)
T ss_dssp TSCCEEEEEESHHHHCEEEEESSCTTSCCSCEESSSSCCSTTSCEEEEEEEETT----TTEEEEEEEECCCCCCCCTTTC
T ss_pred cCCeEEEEeeccCCceeEEEEcCCcceecccCCCceeecCCCCceEEEEeccCC----CceeEEEecccccccccccccc
Confidence 3689999999 9999999999977666677889999999999999998643 35999999999
Q ss_pred --CCCCCCCCCCeeE-----EeeCCCCccceecccceeeeeeeeeccccccccceeeEEeeecCCEEEEEEEeeccCCCC
Q psy15505 446 --GNSPYRSEVPSIA-----SRSLDPERMFQIADSAVTTGTRMFVNNLARERYIINYVYGFSSEGFSYFLTTQLKSNIGT 518 (2400)
Q Consensus 446 --~~~~yr~~~paIS-----~R~L~~~~~f~~~~~~v~s~~~i~v~~~~~~~y~~~FV~sF~~g~fVYFlf~e~~~~~~~ 518 (2400)
+.++|| +|+|+ .|+|....+|++. +. ..+...+||.+|+++++|||+|.+-.-.+..
T Consensus 160 ~~~~~~~~--~~ai~~~~~~~r~l~~~~~~~~~---------~~-----~~~~~~~fV~af~~~~~vyf~~y~y~~~s~~ 223 (476)
T 3nvn_B 160 CNPAASDH--DTAIALKDTEGRSLATQELGRLK---------LC-----EGAGSLHFVDAFLWNGSIYFPYYPYNYTSGA 223 (476)
T ss_dssp CCCCGGGT--TEEEEEEESSSGGGCCCTTSEEE---------BC-----TTSCCEEECCCEECSSEEEEEEEEEETTTTE
T ss_pred cCCCcccc--ccceeeccCcccccchhhhccee---------ec-----cCCCCceeeeehhcCceeEEEEEeeccccCC
Confidence 345565 68999 6666554444321 11 1245679999999999999999876654444
Q ss_pred cceeeeEEEEecCCCCcceeeeEEEEccCCCCccccceeEEeecCCCCCcccccccCCCCcEEEEEEeccCCCCCCCCCC
Q psy15505 519 SFYISKLVRICHDDSNYYSYTEIPITCNSNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNR 598 (2400)
Q Consensus 519 ~~~~SRVaRVCk~D~~wtSY~Ea~L~Cs~p~~~~yN~LQaa~v~~pG~~LA~~Lgi~~~~~vLyaVFS~~~~~~~~~s~~ 598 (2400)
-.++|||||||++|.+ +||+|++|+|+.++...||++|++. +.++++||||||+++.+. -.+..
T Consensus 224 ~~~~sriaRvCk~D~~-~sy~e~~L~C~~~~~~~y~ll~slg-------------i~~~ddVLfaVFS~~~~~--~~~~~ 287 (476)
T 3nvn_B 224 ATGWPSMARIAQSTEV-LFQGQASLDCGHGHPDGRRLLLSSS-------------LVEALDVWAGVFSAAAGE--GQERR 287 (476)
T ss_dssp ECSCCEEEEEESSSSC-CEEEEEEECCCSSCSSCCCEEEEEE-------------EETTTTEEEEEEECCCCS--SSCSC
T ss_pred ccceeeEEEEeecCCC-cEEEEEEEeccCCCCCCcceEEecC-------------ccCCCCEEEEEEecCCCC--cccCC
Confidence 4799999999999998 9999999999986433499998854 457899999999997541 02456
Q ss_pred CCCCccccccchHHHHHHhhcccceeecCCCCcceeccCCCCCccccccCccCCcccCccccccCCccCCccceeEEEEe
Q psy15505 599 PKNSSALCIYPLASIRRKFMQNIKTCFSGQGNRGLDFISPAHPCVQTKLQTIGEDFCGLDVNTPLGGENPIEAVAVLNFS 678 (2400)
Q Consensus 599 P~~~SAVCvFsL~dI~~~F~~~~~~Cytg~~~~~lp~~~~~~~C~~~~~~~~~~~~C~~~~~~PL~~~~pv~~~Pll~~~ 678 (2400)
|+++||||+|+|++|+++| +.| +|.- ...+.+|+.+ +|||| ++|+.+.|++..
T Consensus 288 p~~~SALC~F~L~~I~~~i----qsC---------~w~~-----------~~~~~~Cg~~-n~PL~-vqPI~~~PL~~~- 340 (476)
T 3nvn_B 288 SPTTTALCLFRMSEIQARA----KRV---------SWDF-----------KTAESHCKEG-DQPER-VQPIASSTLIHS- 340 (476)
T ss_dssp CTTSEEEEEEEHHHHHHHC----BCC---------CSSB-----------CCSSCCSSSS-CCCEE-ECCCTTCCEEES-
T ss_pred CCCCcEEEEEEHHHHHHHH----hhC---------Cccc-----------ccCccccccC-CCcce-eeccCCCCeEec-
Confidence 7899999999999999994 677 2311 0134569877 89999 999999999973
Q ss_pred ceeeEEEEeeecceEEEEEecCCCcEEEEEEeCCcceEEE-EEEEecCCCeeeeeeEEec-cCCEEEEEecceEEEEEEe
Q psy15505 679 VRCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSSIAIEY-GDVKVDENMTVNADLHLDS-KAMHLYVMTERRVSKVKVQ 756 (2400)
Q Consensus 679 ~~lTsVAV~~~~~~TVvFLGTs~G~L~KV~l~~s~~a~~y-e~i~v~~gspV~~~L~Ld~-~~~~LYV~T~~kV~kVPv~ 756 (2400)
.||+|+|+++.+|||+||||++|+||||++.++.....+ ....+.++.+|.++|.+++ +.++|||+++++|.|||++
T Consensus 341 -~LTsVav~vv~~~TVlFLGTd~G~L~KVvv~~~~~~~~~~~~~ei~ee~~V~~~L~ldp~~~~~LyV~s~~~V~qVPl~ 419 (476)
T 3nvn_B 341 -DLTSVYGTVVMNRTVLFLGTGDGQLLKVILGENLTSNCPEVIYEIKEETPVFYKLVPDPVKNIYIYLTAGKEVRRIRVA 419 (476)
T ss_dssp -SEEEEEEEESSSSEEEEEEETTSEEEEEECCTTSCCCCCEEEEECTTCCCBCSCCEECSSCTTEEEEEETTEEEEEESC
T ss_pred -CCceEEEEEeCCeEEEEEECCCceEEEEEecCCCCccceeEEEeecCCCccccccccCccccceEEEecCcEEEEEEhh
Confidence 599999999999999999999999999988654332111 1223566789999999997 6789999999999999999
Q ss_pred cccccccc--cccc
Q psy15505 757 ECKVYKTC--CLGF 768 (2400)
Q Consensus 757 ~Cs~YtsC--Cl~a 768 (2400)
.|++|.+| |++|
T Consensus 420 ~C~~y~sC~~Cl~A 433 (476)
T 3nvn_B 420 NCNKHKSCSECLTA 433 (476)
T ss_dssp CCTTCCSHHHHHTT
T ss_pred hCcCCCchhHHhhC
Confidence 99999999 5543
No 11
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=100.00 E-value=8e-50 Score=509.48 Aligned_cols=346 Identities=18% Similarity=0.299 Sum_probs=271.5
Q ss_pred ccccCcc----cccCCEEEEecc----ceeEeeecccccc--------cccCeeeEEEecCCCCceEEEEcCCCCCCCCc
Q psy15505 372 AECKAPI----YHTNPILILCVS----GTCTVRSLQNISD--------IVQNVREAVVANNGNASTFAFIAPGPPKPPST 435 (2400)
Q Consensus 372 dEC~~~~----~~~~~~LivCGS----GiC~lr~Lsni~~--------~~~g~~~~vasnd~~~StVGvI~~g~~~~~~~ 435 (2400)
.+|.+.+ ..++++||+||| |+|++++|.+..+ ...+.++.++++||+++++|+|+.+
T Consensus 87 ~~C~N~ikvL~~~~~~~L~~CGT~a~~p~C~~~~l~~~~~~~~~~l~~~~~~~g~~~cp~dp~~~~~~l~~~~------- 159 (495)
T 1q47_A 87 KECANFIKVLEAYNQTHLYACGTGAFHPICTYIEVGHHPEDNIFKLQDSHFENGRGKSPYDPKLLTASLLIDG------- 159 (495)
T ss_dssp TTSSCBEEEEEECSSSEEEEEECCSSSCEEEEEECCSCTTSCCCEEEEEEEEECTTTSCSSTTSCCEEEEETT-------
T ss_pred ccCcceEEEEEecCCCeEEEeecCCCCceEEEEecCcccccceeeccccccccCceeCCCCCCcCeeEEEeCC-------
Confidence 5687753 246779999999 9999999964321 1233445667779999999999853
Q ss_pred eeEEEEEEeeCCCCCCCCCCeeEEeeCCCCccceecccceeeeeeeeeccccccccceeeEEee-------ecCCEEEEE
Q psy15505 436 HVMYVGVTFTGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVNNLARERYIINYVYGF-------SSEGFSYFL 508 (2400)
Q Consensus 436 ~~LyVGtt~~~~~~yr~~~paIS~R~L~~~~~f~~~~~~v~s~~~i~v~~~~~~~y~~~FV~sF-------~~g~fVYFl 508 (2400)
.||||+++++.+ ..++.+|.++.......+.. ...+...++||.+| .+++|||||
T Consensus 160 -~LY~gt~~d~~g-----~~~~i~rsl~~~~~lrT~~~------------d~~~l~~p~FV~s~~i~~~~~~~~~~VYFf 221 (495)
T 1q47_A 160 -ELYSGTAADFMG-----RDFAIFRTLGHHHPIRTEQH------------DSRWLNDPRFISAHLIPESDNPEDDKVYFF 221 (495)
T ss_dssp -EEEEEEECSTTS-----CCEEEEEEESSSCCEECCSS------------CTTTCSSCEEEEEEEECCSSSGGGCEEEEE
T ss_pred -eEEEEEeccCCC-----CCcceeeecCcccccccccc------------CcccccCcceEEEEEecccccCCCCEEEEE
Confidence 999999988763 23566788854221111100 12234578999999 578999999
Q ss_pred EEeeccCC--CCcceeeeEEEEecCCC--------CcceeeeEEEEccCCCC----ccccceeEEeecCCCCCccccccc
Q psy15505 509 TTQLKSNI--GTSFYISKLVRICHDDS--------NYYSYTEIPITCNSNSG----KQYNLVQAGFVGKPGSDLAGDLGI 574 (2400)
Q Consensus 509 f~e~~~~~--~~~~~~SRVaRVCk~D~--------~wtSY~Ea~L~Cs~p~~----~~yN~LQaa~v~~pG~~LA~~Lgi 574 (2400)
|+|.+.+. .++.++||||||||+|. +|+||+||||+|+.|++ ++||+|||||++++|
T Consensus 222 f~e~~~e~~~~~~~~~SRVaRvCk~D~GG~~~l~~~wtSflka~L~Cs~~g~~g~~~~fn~lq~v~~~~~~--------- 292 (495)
T 1q47_A 222 FRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQDVFLMNSK--------- 292 (495)
T ss_dssp EEEECCCCSSCCCCEEEEEEEEETTCCCBSSSSBTBCSSCEEEEBCCEECCTTSCCEECCEEEEEEEECCS---------
T ss_pred EEeecccccccCcceEEEEEEECCCCCCccccchhccceEEEEEEEccCCCCCCCccccCceeeEEEeccC---------
Confidence 99999864 57889999999999998 99999999999999753 689999999999887
Q ss_pred CCCCcEEEEEEeccCCCCCCCCCCCCCCccccccchHHHHHHhhcccceeecCCCCcceecc-----CCCCCccccccCc
Q psy15505 575 TAQDDVLFAVFAESEAPDGEGSNRPKNSSALCIYPLASIRRKFMQNIKTCFSGQGNRGLDFI-----SPAHPCVQTKLQT 649 (2400)
Q Consensus 575 ~~~~~vLyaVFS~~~~~~~~~s~~P~~~SAVCvFsL~dI~~~F~~~~~~Cytg~~~~~lp~~-----~~~~~C~~~~~~~ 649 (2400)
++++++|||||+++++ +..+||||+|+|++|+++|+++++++ .+....|.+|. ++++.|.......
T Consensus 293 ~~~~~vlygvFst~~~--------~~~~SAvC~f~l~~I~~~F~g~~~~~-~~~~~~w~~~~g~vp~prpg~C~~~~~~~ 363 (495)
T 1q47_A 293 DPKNPIVYGVFTTSSN--------IFKGSAVCMYSMSDVRRVFLGPYAHR-DGPNYQWVPYQGRVPYPRPGTCPSKTFGG 363 (495)
T ss_dssp STTCCEEEEEEECSCS--------SSCCEEEEEECHHHHHHHHTSCBEEC-SSTTBCCEECCSCCCSSCTTCCCCSSTTS
T ss_pred CCCCcEEEEEEecCCC--------CCCCcEEEEeEHHHHHHHHhhhhhhc-cCCccceeeecCccCCCCCCccCCCCccc
Confidence 4689999999999876 36789999999999999999999985 44556777763 4789998754211
Q ss_pred --cCCcccCccc----cccCC--ccCCccceeEEEEec---eeeEEEEeee----cceEEEEEecCCCcEEEEEEeCCc-
Q psy15505 650 --IGEDFCGLDV----NTPLG--GENPIEAVAVLNFSV---RCTAVAATST----GDYTVVFIGTDTGHLKKVVVETSS- 713 (2400)
Q Consensus 650 --~~~~~C~~~~----~~PL~--~~~pv~~~Pll~~~~---~lTsVAV~~~----~~~TVvFLGTs~G~L~KV~l~~s~- 713 (2400)
.+..+.+..+ .|||| .+.|+.+.|+|+..+ +||+|||+.+ ++|||+||||++|+|+||++.++.
T Consensus 364 ~~~s~~~pd~~l~f~~~hpLm~~~v~pi~~~Pll~~~~~~~~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~ 443 (495)
T 1q47_A 364 FDSTKDLPDDVITFARSHPAMYNPVFPINNRPIMIKTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKET 443 (495)
T ss_dssp CSCGGGCCHHHHHHHHTCCBBSSCBCCGGGSCSEEESSSSSCEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC----
T ss_pred cccccccchhhhhhcccCccccccccccCcccEEEecCCccceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCC
Confidence 1122222111 59997 478999999999875 6999999998 889999999999999999986433
Q ss_pred ----ceEEEEEEEec-CCCeeeeeeEEeccCCEEEEEecceEEEEEEeccccc
Q psy15505 714 ----IAIEYGDVKVD-ENMTVNADLHLDSKAMHLYVMTERRVSKVKVQECKVY 761 (2400)
Q Consensus 714 ----~a~~ye~i~v~-~gspV~~~L~Ld~~~~~LYV~T~~kV~kVPv~~Cs~Y 761 (2400)
.+.+||+++++ .++|| ++|.|++++++|||+|+++|+|||+++|++|
T Consensus 444 ~~~~~~~~~eei~v~~~~~pI-~~m~l~~~~~~Lyv~s~~~V~~vpv~~C~~y 495 (495)
T 1q47_A 444 WHDLEEVLLEEMTVFREPTTI-SAMELSTKQQQLYIGSTAGVAQLPLHRCDIY 495 (495)
T ss_dssp -------CCEEECCSSSCCCC-CEEEEETTTTEEEEEBSSCEEEEESCCTTCC
T ss_pred ccccceEEEEEEeecCCCCcc-ceEEEcCCCCEEEEEECCeEEEEEHHHcCCC
Confidence 35678999997 47999 6999999999999999999999999999987
No 12
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=100.00 E-value=1.7e-49 Score=518.08 Aligned_cols=360 Identities=18% Similarity=0.324 Sum_probs=278.9
Q ss_pred ccccCcc----cccCCEEEEecc----ceeEeeeccccccc----------ccCeeeEEEecCCCCceEEEEcCCCCCCC
Q psy15505 372 AECKAPI----YHTNPILILCVS----GTCTVRSLQNISDI----------VQNVREAVVANNGNASTFAFIAPGPPKPP 433 (2400)
Q Consensus 372 dEC~~~~----~~~~~~LivCGS----GiC~lr~Lsni~~~----------~~g~~~~vasnd~~~StVGvI~~g~~~~~ 433 (2400)
++|.|.+ ..++++||+||| |+|++++|+++.+. ..|...| .++|+.+++++++.|
T Consensus 95 ~eC~NyikvL~~~~~~~LivCGTnafqp~C~~~~l~~~~~~~~~~~~~~~~~sg~g~c--P~dP~~~~tal~~dg----- 167 (667)
T 4gz8_A 95 KECANFIKVLEAYNQTHLYACGTGAFHPICTYIEVGHHPEDNIFKLQDSHFENGRGKS--PYDPKLLTASLLIDG----- 167 (667)
T ss_dssp TTSSCBEEEEEEEETTEEEEEECCSSSCEEEEEECCSSSSCCCCEECCSCCEECTTTS--CSSSSSCCEEEEETT-----
T ss_pred ccCCCeEEEEEECCCCeEEECCCCCCCceEEEEECCCccccceeecccccccCcceEC--CCCCccceEEEeecC-----
Confidence 4677764 256789999999 99999999987431 1233334 458888899999865
Q ss_pred CceeEEEEEEeeCCCCCCCCCCeeEEeeCCCCccceecccceeeeeeeeeccccccccceeeEEee-------ecCCEEE
Q psy15505 434 STHVMYVGVTFTGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVNNLARERYIINYVYGF-------SSEGFSY 506 (2400)
Q Consensus 434 ~~~~LyVGtt~~~~~~yr~~~paIS~R~L~~~~~f~~~~~~v~s~~~i~v~~~~~~~y~~~FV~sF-------~~g~fVY 506 (2400)
.||+|+..++. ++.| +.+|++...+.+..+.. .....++++||.+| .+++|||
T Consensus 168 ---~LYsGT~~df~----g~d~-~I~Rsl~~~~~lrT~~~------------~s~~l~~P~FV~s~~i~~~~~~~~d~VY 227 (667)
T 4gz8_A 168 ---ELYSGTAADFM----GRDF-AIFRTLGHHHPIRTEQH------------DSRWLNDPRFISAHLIPESDNPEDDKVY 227 (667)
T ss_dssp ---EEEEEEECSTT----SCCE-EEEEESCSSCCEECCSS------------CTTTCSSCEEEEEEEECCSSSTTSCEEE
T ss_pred ---eEEEEeccccC----CCCc-eEEecCCCCCcceeeec------------ccccccCCcceeeeeecccccCCCCEEE
Confidence 79999987544 3344 55799866544332111 11123456676665 6799999
Q ss_pred EEEEeeccC--CCCcceeeeEEEEecCC--------CCcceeeeEEEEccCCCC----ccccceeEEeecCCCCCccccc
Q psy15505 507 FLTTQLKSN--IGTSFYISKLVRICHDD--------SNYYSYTEIPITCNSNSG----KQYNLVQAGFVGKPGSDLAGDL 572 (2400)
Q Consensus 507 Flf~e~~~~--~~~~~~~SRVaRVCk~D--------~~wtSY~Ea~L~Cs~p~~----~~yN~LQaa~v~~pG~~LA~~L 572 (2400)
|||+|++.+ ..++.++||||||||+| ++|+||+||||+|+.|++ ++||.+|+++...++
T Consensus 228 FFFrE~a~e~~~~~k~~~SRVaRVCknD~GG~~~L~~~wtSFlKarL~Cs~pg~~~~~~~fn~Lq~v~~~~~~------- 300 (667)
T 4gz8_A 228 FFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQDVFLMNSK------- 300 (667)
T ss_dssp EEEEEECCCC-CCCCCEEEEEEEEETTCCCCSSSSTTBCSSCEEEEECCEECCTTSCCEECCEEEEEEEECCS-------
T ss_pred EEEEEEeeccCCcccceeeeeeeeCCCCCCCccccccceeeEEEEEEEeecCCCCcccchhHhhhheeEccCC-------
Confidence 999999875 46788999999999999 499999999999998763 579999999998765
Q ss_pred ccCCCCcEEEEEEeccCCCCCCCCCCCCCCccccccchHHHHHHhhcccceeecCCCCcceecc-----CCCCCcccccc
Q psy15505 573 GITAQDDVLFAVFAESEAPDGEGSNRPKNSSALCIYPLASIRRKFMQNIKTCFSGQGNRGLDFI-----SPAHPCVQTKL 647 (2400)
Q Consensus 573 gi~~~~~vLyaVFS~~~~~~~~~s~~P~~~SAVCvFsL~dI~~~F~~~~~~Cytg~~~~~lp~~-----~~~~~C~~~~~ 647 (2400)
++++++|||||+++++ +..+||||+|+|++|+++|++++++| .+....|.++. ++++.|.....
T Consensus 301 --~~~~~vlYaVFtt~~~--------~~~~SAVC~FsL~dI~~~F~g~~k~~-~~~~~~w~~~~~~vp~prpg~c~~~~~ 369 (667)
T 4gz8_A 301 --DPKNPIVYGVFTTSSN--------IFKGSAVCMYSMSDVRRVFLGPYAHR-DGPNYQWVPYQGRVPYPRPGTCPSKTF 369 (667)
T ss_dssp --CTTCCEEEEEEECSCS--------SSCCEEEEEEEHHHHHHHHHSCBEEC-SSTTBCCEECCSCCCSSCTTCCCCSSS
T ss_pred --CCCCcEEEEEecCCCC--------CCCCcEEEEEEcHHHHHHHhhhhhcc-cCCCcccccccCCcCCCCccccCCCcc
Confidence 4678999999999886 25689999999999999999999885 45566788875 46788876532
Q ss_pred Ccc--CCcccCccc----cccCCc--cCCccceeEEEEec---eeeEEEEeee----cceEEEEEecCCCcEEEEEEeCC
Q psy15505 648 QTI--GEDFCGLDV----NTPLGG--ENPIEAVAVLNFSV---RCTAVAATST----GDYTVVFIGTDTGHLKKVVVETS 712 (2400)
Q Consensus 648 ~~~--~~~~C~~~~----~~PL~~--~~pv~~~Pll~~~~---~lTsVAV~~~----~~~TVvFLGTs~G~L~KV~l~~s 712 (2400)
... +..+++..+ .||||. +.|+.+.|+|+..+ ++|+|||+.+ ++|||+||||++|+||||++.++
T Consensus 370 ~~~~ss~~lpd~~L~f~k~hpLm~~~V~Pi~~~Pll~~~~~~~~lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~ 449 (667)
T 4gz8_A 370 GGFDSTKDLPDDVITFARSHPAMYNPVFPINNRPIMIKTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPK 449 (667)
T ss_dssp SCCCSSTTSCHHHHHTTTSCCBBSSCBCCGGGSCSEEECSSSCCEEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC-
T ss_pred CcccCcccCChhhccccccCCCcccccCCCCCCceEEEcCcccceeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCC
Confidence 211 122333222 599996 57999999999875 6999999886 35999999999999999987643
Q ss_pred c-----ceEEEEEEEecC-CCeeeeeeEEeccCCEEEEEecceEEEEEEeccccc-ccc--ccccc-c---Cc-ccccc
Q psy15505 713 S-----IAIEYGDVKVDE-NMTVNADLHLDSKAMHLYVMTERRVSKVKVQECKVY-KTC--CLGFQ-P---TI-AACVA 777 (2400)
Q Consensus 713 ~-----~a~~ye~i~v~~-gspV~~~L~Ld~~~~~LYV~T~~kV~kVPv~~Cs~Y-tsC--Cl~ar-P---W~-~~Cvs 777 (2400)
. ...++|+++++. ++||. +|.|++.+++|||+|+++|+|||+++|++| ++| |++|| | |+ .+|+.
T Consensus 450 ~~~~~~~~~~leEi~v~~~~~pI~-~L~ld~~~~~LYV~t~~~V~kVPl~~C~~y~~sC~~Cl~ArDPYCGW~~~~Csr 527 (667)
T 4gz8_A 450 ETWHDLEEVLLEEMTVFREPTTIS-AMELSTKQQQLYIGSTAGVAQLPLHRCDIYGKACAECCLARDPYCAWDGSSCSR 527 (667)
T ss_dssp -----CEEEEEEEEECSSSCCCCC-EEEEETTTTEEEEEBSSCEEEEESCCGGGSCSSHHHHHHTCCTTEECCSSSCEE
T ss_pred CCccccceEEEEEEeecCCCceee-eEEEcCCCCEEEEEECCEEEEEEhhhccCccccHHHHhcCCCCCCCCccCcCee
Confidence 3 345678888875 57786 999999999999999999999999999999 789 99999 9 97 56763
No 13
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.2e-49 Score=504.67 Aligned_cols=353 Identities=17% Similarity=0.326 Sum_probs=273.4
Q ss_pred cccccCccc---ccCCEEEEecc----ceeEeeecccccccccCeeeEEEecCCCCceEEEEcCCCCCCCCceeEEEEEE
Q psy15505 371 AAECKAPIY---HTNPILILCVS----GTCTVRSLQNISDIVQNVREAVVANNGNASTFAFIAPGPPKPPSTHVMYVGVT 443 (2400)
Q Consensus 371 ~dEC~~~~~---~~~~~LivCGS----GiC~lr~Lsni~~~~~g~~~~vasnd~~~StVGvI~~g~~~~~~~~~LyVGtt 443 (2400)
..||.|.+. ..+++|++||| |.|...+...+.....|...|++ ||....+++++.| .||.|+.
T Consensus 79 k~eC~NyIrvl~~~~~~l~~CGT~Af~P~C~~~~~~~~~~~~~g~g~cP~--dP~~~~t~~~~~g--------~LYs~t~ 148 (590)
T 3nvq_A 79 KRDCENYITLLERRSEGLLACGTNARHPSCWNLVNGTVVPLGEMRGYAPF--SPDENSLVLFEGD--------EVYSTIR 148 (590)
T ss_dssp CSSCCCBEEEEEEETTEEEEEECTTTCCEEEEESSSCEEEEEECTTSSCS--STTSCCCEEEETT--------EEEECSC
T ss_pred cccccceEEEeeecCCcEEEeecCCCCCCeeEEeeeeccccccccccccC--CCCCCceEEEecC--------ceeeeee
Confidence 368999754 45567999999 99988766555444556668887 7776667888755 8999985
Q ss_pred eeCCCCCCCCCCeeEEeeCCCCccceecccceeeeeeeeeccccccccceeeEEee------ecCCEEEEEEEeeccCC-
Q psy15505 444 FTGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVNNLARERYIINYVYGF------SSEGFSYFLTTQLKSNI- 516 (2400)
Q Consensus 444 ~~~~~~yr~~~paIS~R~L~~~~~f~~~~~~v~s~~~i~v~~~~~~~y~~~FV~sF------~~g~fVYFlf~e~~~~~- 516 (2400)
.. +|.++.|.| +|.+.... +.+ ...+-.+|+||++| .+++||||||+|.+.+.
T Consensus 149 ~~---~f~g~~p~i-~R~~g~~~--------lrt--------~~~wL~eP~FV~s~~i~~~~~~~d~VYFFFrE~a~e~~ 208 (590)
T 3nvq_A 149 KQ---EYNGKIPRF-RRIRGESE--------LYT--------SDTVMQNPQFIKATIVHQDQAYDDKIYYFFREDNPDKN 208 (590)
T ss_dssp SS---TTCCSCCCC-EEEESSSC--------EEC--------CTTSCSSCEEEEEEEECCSSGGGCEEEEEEEEECSCCC
T ss_pred ec---cccCCCcee-EEcCCCCc--------ccc--------ccchhcCCceeEEEeccccCCCCCEEEEEecccccccc
Confidence 32 233446665 68885321 111 22235689999998 56899999999998753
Q ss_pred -CCcceeeeEEEEecCCC---------CcceeeeEEEEccCCC-CccccceeEEeecCCCCCcccccccCCCCcEEEEEE
Q psy15505 517 -GTSFYISKLVRICHDDS---------NYYSYTEIPITCNSNS-GKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVF 585 (2400)
Q Consensus 517 -~~~~~~SRVaRVCk~D~---------~wtSY~Ea~L~Cs~p~-~~~yN~LQaa~v~~pG~~LA~~Lgi~~~~~vLyaVF 585 (2400)
.++.++||||||||+|. +||||+||||+|+.|+ +.+||+|||||+++++.. ++++++|||||
T Consensus 209 ~~~~~~~SRVARVCknD~GG~~~ll~~~WTSFlKarL~Cs~pg~~~~FN~LQ~a~~~~~~~~-------~~~~~vlYgVF 281 (590)
T 3nvq_A 209 PEAPLNVSRVAQLCRGDQGGESSLSVSKWNTFLKAMLVCSDAATNKNFNRLQDVFLLPDPSG-------QWRDTRVYGVF 281 (590)
T ss_dssp TTSCSEEEEEEEEETTCCCBSSTTTTTBCSCCEEEEBCCBCTTTCCBCCEEEEEEEECCTTC-------CGGGCEEEEEE
T ss_pred cccceeeeeeeeecCCCccccchhhhcceeEEEEEEEECCCCCCCCCccceeeEEEccccCC-------CCCCCEEEEEE
Confidence 46778999999999995 7999999999999986 679999999999987642 46789999999
Q ss_pred eccCCCCCCCCCCCCCCccccccchHHHHHHhhcccceeecCCCCcceeccCCCCCccccccCccCCcccCccccccCCc
Q psy15505 586 AESEAPDGEGSNRPKNSSALCIYPLASIRRKFMQNIKTCFSGQGNRGLDFISPAHPCVQTKLQTIGEDFCGLDVNTPLGG 665 (2400)
Q Consensus 586 S~~~~~~~~~s~~P~~~SAVCvFsL~dI~~~F~~~~~~Cytg~~~~~lp~~~~~~~C~~~~~~~~~~~~C~~~~~~PL~~ 665 (2400)
+++++ +||||+|+|++|+++|+++..+||++.. |. ++|+.|++.+.. +++..-.....||||.
T Consensus 282 t~~~~-----------~SAVCafsl~dI~~~F~~~~~~~y~~~v----p~-prPg~C~~~s~~-~pd~~l~f~~~hplM~ 344 (590)
T 3nvq_A 282 SNPWN-----------YSAVCVYSLGDIDKVFRTSSLKGYHSSL----PN-PRPGKCLPDQQP-IPTETFQVADRHPEVA 344 (590)
T ss_dssp ECTTC-----------CEEEEEEEHHHHHHHHHHCCBTTCCSCC----CS-SCTTCCCSSSCC-BCHHHHHHHHHCCBBS
T ss_pred ecCCC-----------CceEEEeeHHHHHHHHhcCceeeecCCC----CC-CCCCcCcCCCCC-Ccccccchhhcccccc
Confidence 97654 7999999999999999999999998653 33 678999875332 2222111112589996
Q ss_pred --cCCcc--ceeEEEEeceeeEEEEeeec-----ceEEEEEecCCCcEEEEEEeCCc---ceEEEEEEEecC-CCeeeee
Q psy15505 666 --ENPIE--AVAVLNFSVRCTAVAATSTG-----DYTVVFIGTDTGHLKKVVVETSS---IAIEYGDVKVDE-NMTVNAD 732 (2400)
Q Consensus 666 --~~pv~--~~Pll~~~~~lTsVAV~~~~-----~~TVvFLGTs~G~L~KV~l~~s~---~a~~ye~i~v~~-gspV~~~ 732 (2400)
+.|+. ..|++....+||+|||+.+. +|||+||||++|+||||++.++. ....+++++++. ++|| ++
T Consensus 345 ~~v~p~~p~~~pL~~~~~~~T~IaVd~v~a~~g~~ytVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi-~~ 423 (590)
T 3nvq_A 345 QRVEPMGPLKTPLFHSKYHYQKVAVHRMQASHGETFHVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAI-QT 423 (590)
T ss_dssp SCBCCSSSSCCCSEEESSCEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCC-CE
T ss_pred cccCCCCccccceEecCCcEEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCce-ee
Confidence 34555 56888754589999999764 79999999999999999986433 246678888764 4667 59
Q ss_pred eEEeccCCEEEEEecceEEEEEEecccccc-cc--ccccc-c---Cc-cccccc
Q psy15505 733 LHLDSKAMHLYVMTERRVSKVKVQECKVYK-TC--CLGFQ-P---TI-AACVAS 778 (2400)
Q Consensus 733 L~Ld~~~~~LYV~T~~kV~kVPv~~Cs~Yt-sC--Cl~ar-P---W~-~~Cvss 778 (2400)
|.|++++++|||+++++|.|||+++|++|. +| |++|| | |+ .+|+..
T Consensus 424 L~ls~~~~~LyV~s~~~V~qVPl~~C~~y~~sC~~Cl~ArDPYCGWc~~~C~~~ 477 (590)
T 3nvq_A 424 MSLDAERRKLYVSSQWEVSQVPLDLCEVYGGGCHGCLMSRDPYCGWDQGRCISI 477 (590)
T ss_dssp EEEETTTTEEEEECSSEEEEEETTCCTTCCSHHHHHHHTCCTTEEEETTEEEET
T ss_pred EEEcCCCCEEEEEecceEEEcchhhccccccchhHHhcCCCCCCCCccccceec
Confidence 999999999999999999999999999997 89 99999 8 86 567653
No 14
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=100.00 E-value=4.8e-35 Score=306.12 Aligned_cols=99 Identities=41% Similarity=0.766 Sum_probs=79.1
Q ss_pred ccccchhhhhcccceeeeEEee---------------------------echhhHHhhhccCCCCCCCCCCCcceEEeeC
Q psy15505 1840 RYSLSEEKLIRHAIDFKPMTVY---------------------------VKEKSLDTIYRATPYSLRPRKDDLDVEWRTG 1892 (2400)
Q Consensus 1840 rytL~e~~Llr~~i~~~~l~l~---------------------------vKeKild~~yk~~p~s~rp~~~~~dlew~~~ 1892 (2400)
.-+|||+|||||+|||++|||+ ||||||||||||+||||||+++|+|||||+|
T Consensus 7 ~~~lsEdkLLRq~vey~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g 86 (138)
T 2r2o_A 7 HSSGRENLYFQGDVEYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSG 86 (138)
T ss_dssp ---------------CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECS
T ss_pred ccccChhHhhcccceeEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecC
Confidence 3589999999999999999986 9999999999999999999999999999999
Q ss_pred CCCcEEEecCCCCceeeCceEEEeeccCCCCCCCcEEEEEeeeccc
Q psy15505 1893 NTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQYNL 1938 (2400)
Q Consensus 1893 ~~~~~~L~d~D~ts~~~~~w~rlNTl~hY~v~d~a~~~l~~~~~~~ 1938 (2400)
++|+++|+|+|.||+++|+|||||||+||+|||||+|+|+||+.+.
T Consensus 87 ~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dga~l~l~~~~~~~ 132 (138)
T 2r2o_A 87 VAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVALVPCLTKH 132 (138)
T ss_dssp SSCEEEECSSSTTCCEETTEEECCBHHHHTCCTTCEEEEEEC----
T ss_pred CcCceEeeccCCcccccCCceeecchhccCCCCCCEEEEEECCCcc
Confidence 9999999999999999999999999999999999999999998443
No 15
>3nvx_A Protein A39; beta-propeller, viral protein; HET: NAG; 2.00A {Vaccinia virus} PDB: 3nvn_A*
Probab=100.00 E-value=2.5e-33 Score=337.80 Aligned_cols=274 Identities=12% Similarity=0.189 Sum_probs=198.5
Q ss_pred cccccccCccc---c---cCCEEEEecc----ceeEeeecccc-cccccCeeeEEEecCCCCceEEEEcCCCCCCCCcee
Q psy15505 369 RVAAECKAPIY---H---TNPILILCVS----GTCTVRSLQNI-SDIVQNVREAVVANNGNASTFAFIAPGPPKPPSTHV 437 (2400)
Q Consensus 369 sV~dEC~~~~~---~---~~~~LivCGS----GiC~lr~Lsni-~~~~~g~~~~vasnd~~~StVGvI~~g~~~~~~~~~ 437 (2400)
+-.+||.|.+. . .+++|++||| |.|..+ .+. .....+...|++.|.. .++. +.. +.
T Consensus 41 k~~~eC~NyIrVL~~~~~~~~~L~vCGTNAf~P~C~~~--~~~~~~~~~g~G~~Pf~ps~--~s~~-~~~--------g~ 107 (383)
T 3nvx_A 41 KTGLTNNNYITTSIKVEDADKDTLVCGTNNGNPKCWKI--DGSDDPKHRGRGYAPYQNSK--VTII-SYN--------EC 107 (383)
T ss_dssp EEECCSSCBEEEEEEC----CCEEEEECGGGSCEEEET--TSCBCTTCCCBTTBCSSSCC--CCEE-EET--------TE
T ss_pred cChhHhcceEEEEEEccCCCCeEEEecCCCCCCceEee--cCcccccccccccCCCCCCc--ceEE-ecC--------Ce
Confidence 44678999764 2 4589999999 999666 332 2233455577775433 2232 223 37
Q ss_pred EEEEEEeeCCCCCCCCCCeeEEeeCCCC-ccceecccceeeeeeeeeccccccccceeeEEeee----cCCEEEEEEEee
Q psy15505 438 MYVGVTFTGNSPYRSEVPSIASRSLDPE-RMFQIADSAVTTGTRMFVNNLARERYIINYVYGFS----SEGFSYFLTTQL 512 (2400)
Q Consensus 438 LyVGtt~~~~~~yr~~~paIS~R~L~~~-~~f~~~~~~v~s~~~i~v~~~~~~~y~~~FV~sF~----~g~fVYFlf~e~ 512 (2400)
||+|+..+ . +..|.| +|.++.. ... .+ ....-.+|+||.+|. ++++|||||+|.
T Consensus 108 LYsat~~d-~----G~~p~i-~R~~g~~~~~L-------rT--------~d~wLn~P~FV~s~~~~~~dddkVYFFFrE~ 166 (383)
T 3nvx_A 108 VLSDINIS-K----EGIKRW-RRFDGPCGYDL-------YT--------ADNVIPKDGLRGAFVDKDGTYDKVYILFTDT 166 (383)
T ss_dssp EEECSCSS-T----TCCCCC-EECSBTTBSCE-------EC--------CTTSSCTTCCSEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEccc-C----CCCceE-EecCCCCCccc-------cc--------cccccCCcceeEEEccccCCCCEEEEEEEee
Confidence 99998664 2 235544 6777541 111 11 122345789999995 589999999999
Q ss_pred ccCCCCcceeeeEEEEecCCC---------CcceeeeEEEEccCCCCccccceeEEeecCCCCCcccccccCCCCcEEEE
Q psy15505 513 KSNIGTSFYISKLVRICHDDS---------NYYSYTEIPITCNSNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFA 583 (2400)
Q Consensus 513 ~~~~~~~~~~SRVaRVCk~D~---------~wtSY~Ea~L~Cs~p~~~~yN~LQaa~v~~pG~~LA~~Lgi~~~~~vLya 583 (2400)
+.+. .+.++||||||||+|. +||||+||||+|+.|+..+||++|++++. .+++++|||
T Consensus 167 a~e~-~~~~~SRVARVCknD~GG~~~L~~~kWTSFLKArL~Cs~pG~~~~nllq~~~~~------------~~~~~vlYg 233 (383)
T 3nvx_A 167 IGSK-RIVKIPYIAQMCLNDEGGPSSLSSHRWSTFLKVELECDIDGRSYRQIIHSRTIK------------TDNDTILYV 233 (383)
T ss_dssp ECSS-SCEEEEEEEEEETTCCCCSSGGGTTBCSSCEEEEECCEETTEECCEEEEEEEEE------------CSSCEEEEE
T ss_pred cccc-cceeeehhhhcCccCCCCcccchhcceeeEEEEEEECCCCCcccccEEEEEEec------------CCCCcEEEE
Confidence 8753 3468999999999996 49999999999999876689999999864 245789999
Q ss_pred EEeccCCCCCCCCCCCCCCccccccchHHHHHHhhcccceeecCCCCcceeccCCCCCccccccCccCCcccCccccccC
Q psy15505 584 VFAESEAPDGEGSNRPKNSSALCIYPLASIRRKFMQNIKTCFSGQGNRGLDFISPAHPCVQTKLQTIGEDFCGLDVNTPL 663 (2400)
Q Consensus 584 VFS~~~~~~~~~s~~P~~~SAVCvFsL~dI~~~F~~~~~~Cytg~~~~~lp~~~~~~~C~~~~~~~~~~~~C~~~~~~PL 663 (2400)
||+++|+ +||||+|+|++|+++|+++++.-|+ .++|+ +||+.|++.+.. +++..-.....|||
T Consensus 234 vFss~~~-----------~SAVC~ysl~dI~~~F~g~~~~~~~----~~vP~-PRPG~C~~~~~~-lpd~tl~fik~hpL 296 (383)
T 3nvx_A 234 FFDSPYS-----------KSALCTYSMNTIKQSFSTSKLEGYT----KQLPS-PAPGICLPAGKV-VSHTTFEVIEKYNV 296 (383)
T ss_dssp EEECSSS-----------EEEEEEEEHHHHHHHHHHCCBTTCC----SCCCS-SCTTCCCCTTCC-CCHHHHHHHHHCCE
T ss_pred EecCCCC-----------CcEEEeeeHHHHHHHhcCCcccccC----CCCCC-CCCCcccCCCCC-CChHHHHHHHhCcc
Confidence 9997654 7999999999999999999877553 24565 789999986432 23221111125999
Q ss_pred Cc--cCCccceeEEEEeceeeEEEEeee----cceEEEEEecCCCcEEEEE
Q psy15505 664 GG--ENPIEAVAVLNFSVRCTAVAATST----GDYTVVFIGTDTGHLKKVV 708 (2400)
Q Consensus 664 ~~--~~pv~~~Pll~~~~~lTsVAV~~~----~~~TVvFLGTs~G~L~KV~ 708 (2400)
|. +.|+.++|+++...++|+||||.+ ..|+|+||||+ .|.|.-
T Consensus 297 Md~~V~P~~~~Pl~~~~~~ft~IaVD~v~~~~~~y~VlflgTn--~~~~~~ 345 (383)
T 3nvx_A 297 LDDIIKPLSNQPIFEGPSGVKWFDIKEKENEHREYRIYFIKEN--SIYSFD 345 (383)
T ss_dssp EEEEECCGGGSCSEEEETTCCEEEEEECSSSTTCEEEEEEETT--EEEEEE
T ss_pred cccccCCCCCCceEecCcceEEEEEEEEcCCCCeEEEEEEecc--cceecc
Confidence 96 689999999995558999999977 58999999999 667764
No 16
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=99.97 E-value=5.7e-33 Score=285.42 Aligned_cols=90 Identities=54% Similarity=0.964 Sum_probs=78.0
Q ss_pred hhhhcccceeeeEEee------------------------echhhHHhhhccCCCCCCCCCCCcceEEeeCCCCcEEEec
Q psy15505 1846 EKLIRHAIDFKPMTVY------------------------VKEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYD 1901 (2400)
Q Consensus 1846 ~~Llr~~i~~~~l~l~------------------------vKeKild~~yk~~p~s~rp~~~~~dlew~~~~~~~~~L~d 1901 (2400)
+|||||+|||++|||+ ||||||||+|||+|||+||+++++|||||+|++|++||+|
T Consensus 2 d~LLre~ie~~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D 81 (117)
T 4e74_A 2 DKLIRQQIDYKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQD 81 (117)
T ss_dssp --------CCCEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECS
T ss_pred CcccccccccEEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeec
Confidence 7999999999999988 9999999999999999999999999999999999999999
Q ss_pred CCCCceeeCceEEEeeccCCCCCCCcEEEEEeee
Q psy15505 1902 YDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQ 1935 (2400)
Q Consensus 1902 ~D~ts~~~~~w~rlNTl~hY~v~d~a~~~l~~~~ 1935 (2400)
+|.||+++|+|||||||+||+|||||+|+|+||+
T Consensus 82 ~D~ts~~~~~wkrLNTL~HY~V~dgatl~l~~~~ 115 (117)
T 4e74_A 82 EDITTKIENDWKRLNTLAHYQVPDGSVVALVSKQ 115 (117)
T ss_dssp SSTTCCC---CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred CCCccEecCcceEeccccccCCCCCCEEEEEeCC
Confidence 9999999999999999999999999999999998
No 17
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.3e-32 Score=284.12 Aligned_cols=96 Identities=38% Similarity=0.564 Sum_probs=73.3
Q ss_pred echhhHHhhhccCCCCCCCCCCCcceEEeeCCCCcEEEecCCCCceeeCceEEEeeccCCCCCCCcEEEEEeeecccccc
Q psy15505 1862 VKEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQYNLSIL 1941 (2400)
Q Consensus 1862 vKeKild~~yk~~p~s~rp~~~~~dlew~~~~~~~~~L~d~D~ts~~~~~w~rlNTl~hY~v~d~a~~~l~~~~~~~~~~ 1941 (2400)
||||||||+|||+||||||+++++|||||+|++|++||+|+|.||+++|+|||||||+||+|||||+|+|+|++.+.
T Consensus 32 vKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~dgatv~l~~~~~~~--- 108 (127)
T 3h6n_A 32 VKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPEGASLAMSLIDKKD--- 108 (127)
T ss_dssp HHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCTTCEEEEEECC------
T ss_pred hhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCCCCEEEEEEccccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987322
Q ss_pred ccCCCcccccccccccCCCCCCccCCCCCceeEEeec
Q psy15505 1942 SEKTDKYETLNLSKMGRNTSPLNRDHDGMAKEWHLVK 1978 (2400)
Q Consensus 1942 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HLvk 1978 (2400)
.||.+.+.++|.|+|||||
T Consensus 109 ------------------~~~~~~~~~~~~k~wHLV~ 127 (127)
T 3h6n_A 109 ------------------NTLGRVKDLDTEKYFHLVL 127 (127)
T ss_dssp -------------------------------------
T ss_pred ------------------ccccccccccCceEEEEeC
Confidence 2355555678899999997
No 18
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=99.97 E-value=1.2e-32 Score=280.29 Aligned_cols=87 Identities=47% Similarity=0.816 Sum_probs=64.7
Q ss_pred hhhcccceeeeEEee-----------------------echhhHHhhhccCCCCCCCCCCCcceEEeeCCCCcEEEecCC
Q psy15505 1847 KLIRHAIDFKPMTVY-----------------------VKEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYD 1903 (2400)
Q Consensus 1847 ~Llr~~i~~~~l~l~-----------------------vKeKild~~yk~~p~s~rp~~~~~dlew~~~~~~~~~L~d~D 1903 (2400)
|||||+|||++|||+ ||||||||+|||+|||+||+++++|||||+|++|+ +|+|+|
T Consensus 1 ~LLre~ie~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~-iL~D~D 79 (111)
T 4e71_A 1 GLLGDDVEYAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQ-ILSDLD 79 (111)
T ss_dssp -------CCCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCE-ECCSSC
T ss_pred CCcccceeeEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCc-cccccC
Confidence 799999999999988 99999999999999999999999999999999999 899999
Q ss_pred CCceeeCceEEEeeccCCCCCCCcEEEEEee
Q psy15505 1904 STTKVEGEWKKVNTLNHYRVPDGGCLNLVSK 1934 (2400)
Q Consensus 1904 ~ts~~~~~w~rlNTl~hY~v~d~a~~~l~~~ 1934 (2400)
.||+++|+|||||||+||+|||||+|+|+|+
T Consensus 80 ~ts~~~~~wkrLNTL~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 80 LTSQREGRWKRVNTLMHYNVRDGATLILSKV 110 (111)
T ss_dssp TTSCC---CCCCCBHHHHTCCTTCEEEEEEC
T ss_pred ccceecCcceEecchhhcCCCCCCEEEEEeC
Confidence 9999999999999999999999999999996
No 19
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=99.90 E-value=3.9e-25 Score=227.72 Aligned_cols=70 Identities=29% Similarity=0.567 Sum_probs=65.7
Q ss_pred echhhHHhhh--ccCCCCCCCCCCCcceEEeeCCCCcEEEecCCCCcee-eCceEEEeeccCCCCCCCcEEEEEee
Q psy15505 1862 VKEKSLDTIY--RATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKV-EGEWKKVNTLNHYRVPDGGCLNLVSK 1934 (2400)
Q Consensus 1862 vKeKild~~y--k~~p~s~rp~~~~~dlew~~~~~~~~~L~d~D~ts~~-~~~w~rlNTl~hY~v~d~a~~~l~~~ 1934 (2400)
||||||||+| |++|||+| ++++|||||+|+++ ++|+|+|.||++ +++|||||||+||+|||||+|+|+.|
T Consensus 54 VKEKILdavYk~k~~pys~r--~~d~dLEwr~g~~~-~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dgatlal~kk 126 (126)
T 3kuz_A 54 AKEKIFQAFLSKNGSPYGLQ--LNEIGLELQMGTRQ-KELLDIDSSSVILEDGITKLNTIGHYEISNGSTIKVFKK 126 (126)
T ss_dssp HHHHHHHHHHHHHSSCCSSC--GGGEEEEEEETTEE-EEECSSCTTCCBCTTSCBCCCBTGGGTCCTTCEEEEEEC
T ss_pred HHHHHHHHHhccCCCcCCCC--ccccceEEecCCCc-ceeeccCCcceEecCCeeEeccccccCCCCCCEEEEeeC
Confidence 9999999999 79999987 68999999999976 679999999998 89999999999999999999999875
No 20
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=99.72 E-value=1.3e-18 Score=231.85 Aligned_cols=158 Identities=22% Similarity=0.342 Sum_probs=67.9
Q ss_pred eeeEEEEecCCccCCCCcEEEEEEecCCCC-------CcEEEEeCCccceeE--EecCceEEEEcCCCCCccceeEEEEE
Q psy15505 12 TLRNQCVRQTKGPRSGGTILHISGSHMNAG-------SRIEAFIDDLPCRIT--SVEPEMAHCVTSASDRQRNGKLSMKF 82 (2400)
Q Consensus 12 ~~~ItsIsPt~GP~aGGT~LTItG~~L~tG-------S~v~VtVG~~pC~I~--~v~~t~I~C~Tpps~~~g~~~V~V~~ 82 (2400)
.|.|++|+|..||.+|||+|||+|+||..+ +...|+||+.+|.+. ..+.++|+|.||++. .+...|.|.+
T Consensus 541 ~P~ItsI~P~~Gp~~GGT~vTI~G~nf~~~~~~~~~~~~~~V~igg~~C~~~~~~~s~t~I~C~tp~~~-~~~~~v~V~v 619 (727)
T 2uzx_B 541 LPAIYKVFPNSAPLEGGTRLTICGWDFGFRRNNKFDLKKTRVLLGNESCTLTLSESTMNTLKCTVGPAM-NKHFNMSIII 619 (727)
T ss_dssp CCEEEEEESSBCCSSCCCEEEEEEECCCEEETTEEESTTCEEEETTEECEECGGGCCSSEEEEECCC------CCCEEEE
T ss_pred CCEEeccCCCcccCCCCEEEEEEEecCCCCcccccCCcccEEEECCCccceeeeeccCCEEEEEeCCCC-CCCccEEEEE
Confidence 589999999999999999999999999876 357899999999986 567889999999864 3455666666
Q ss_pred CCCeeeecCcceEEeeCCceeeecCCCcCCCCCCCCceeccCCeEEEEEeccccccccCeEEEEEcCceeeeeeEE--ec
Q psy15505 83 DKGTRFFDGSLYEYVEDPTIDSVDSGIQSGQGLKYPKGFPAGGTRINVVGKNLLYIKDPHIYVVYKDKKFVNSCEV--MS 160 (2400)
Q Consensus 83 dg~~~~~~~~~F~Y~enP~ItsIsP~~~~~~~~~P~~Sf~SGG~~ITV~G~nFd~Vq~p~m~V~~~~~~~~~~C~v--~n 160 (2400)
++.........|+|. +|+|++|+| .+|+.+||+.|||+|+||+..+++ .|.+++.. |.+ .+
T Consensus 620 ~~~~~~~~~~~FtY~-~P~I~sisP----------~~G~~sGGt~ITI~G~nf~~~~~~--~V~ig~~~----C~i~~~s 682 (727)
T 2uzx_B 620 SNGHGTTQYSTFSYV-DPVITSISP----------KYGPMAGGTLLTLTGNYLNSGNSR--HISIGGKT----CTLKSVS 682 (727)
T ss_dssp ECSSCEEEEECCBCC-CC--------------------------------------------------------------
T ss_pred eCCcceecccccccc-cceeEEECC----------CccccCCCEEEEEEEECCCCCCce--EEEECCEE----eeEEeec
Confidence 654433334579998 999999997 789999999999999999998754 45566644 865 67
Q ss_pred cceeEEecCCccCCcCccCCCCCceeEEEEEECCce
Q psy15505 161 NNYMICTAPTITGALDKIDEEHPEQLEYGFEMDNVT 196 (2400)
Q Consensus 161 ~T~I~C~sPal~~~~~~~~~~~~~~~~v~f~lDg~~ 196 (2400)
++.|+|.+|+.+. +....|.+.+||..
T Consensus 683 ~t~I~C~tP~~~~---------~g~~~V~V~idg~~ 709 (727)
T 2uzx_B 683 NSILECYTPAQTI---------STEFAVKLKIDLAN 709 (727)
T ss_dssp ------------------------------------
T ss_pred CCEEEEEcCCCCC---------CceEEEEEEECCEE
Confidence 8999999999762 23456778888875
No 21
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Probab=99.55 E-value=8.5e-15 Score=149.46 Aligned_cols=93 Identities=29% Similarity=0.481 Sum_probs=80.9
Q ss_pred CCCCCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCeeeecccceeecccEEEEEeCCCCCCCCccccEEE
Q psy15505 912 TCPNPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVCQVDGPGTRGSREGPVIV 991 (2400)
Q Consensus 912 ~CP~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~~C~v~~~~y~~st~IvC~tpps~~~~~~~G~V~V 991 (2400)
.||+|.|++|+|.+||. ||+|||+|+|||..++|+ ..|+|||.+|.+. ..|.++++|+|+++++. ...|+|+|
T Consensus 4 ~~p~P~It~i~P~~Gp~--GT~vTI~G~nlg~~~sdv-~~V~vgg~~C~~~-~~~~s~~~IvC~~~~~~---~~~g~V~V 76 (99)
T 1uad_C 4 SRQPPLVTGISPNEGIP--WTKVTIRGENLGTGPTDL-IGLTICGHNCLLT-AEWMSASKIVCRVGQAK---NDKGDIIV 76 (99)
T ss_dssp CCCCCEEEEEESSEEST--TCEEEEEEECSCSSGGGE-EEEEETTEECGGG-CEEEETTEEEEECCCCS---SSSCCEEE
T ss_pred CCCCCEEEEEECCCcCC--CCEEEEEEEeCCCCcccc-eEEEECCEEceEe-eceeecCEEEEEeCCCC---CcceeEEE
Confidence 69999999999999988 699999999999999998 5799999999987 56777899999998875 34799999
Q ss_pred EEcc-cccccccceEEeCcEE
Q psy15505 992 KIED-FRGQSKDNYQFVDPVI 1011 (2400)
Q Consensus 992 ~V~~-~~~~S~~~FtY~~P~I 1011 (2400)
.|.+ +.+.+...|+|++|.+
T Consensus 77 ~v~~~~~~~s~~~F~y~~P~~ 97 (99)
T 1uad_C 77 TTKSGGRGTSTVSFKLLKPEK 97 (99)
T ss_dssp EETTTEECEESSCCEECCC--
T ss_pred EECCCCcEEecceEEEeCcee
Confidence 9973 4678889999999875
No 22
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=99.51 E-value=1.6e-14 Score=145.95 Aligned_cols=92 Identities=15% Similarity=0.268 Sum_probs=78.3
Q ss_pred CCCceeeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEeCCccceeEEecCceEEEEcCCCCCccceeEEEEECCCee
Q psy15505 8 AGDGTLRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSMKFDKGTR 87 (2400)
Q Consensus 8 ~~~~~~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtVG~~pC~I~~v~~t~I~C~Tpps~~~g~~~V~V~~dg~~~ 87 (2400)
..-++..|++|+|.+||.+|||+|+|+|.+|++|++++|++|+.+|....+++..|.|+|||. .+|.++|.|.+|++.+
T Consensus 2 ~~~~~~~Itd~sP~~gp~sGGTkv~I~G~~L~~gs~~~~~fG~~~vpa~~~s~~vl~C~tPp~-~~G~v~~~v~~d~~~~ 80 (95)
T 2cxk_A 2 SSGSSGMVTDYSPEWSYPEGGVKVLITGPWQEASNNYSCLFDQISVPASLIQPGVLRCYCPAH-DTGLVTLQVAFNNQII 80 (95)
T ss_dssp ---CCSCCCEEECSEECTTCCCEEEEESSCCCCSSCEEEEETTEEEECEEEETTEEEEECCCC-CSEEEEEEEEETTEEC
T ss_pred CCCCcEEEEEECCCcccCCCCEEEEEEeECCCCCccEEEEECCEEEeEEEeECCEEEEEecCC-CCceEeEEEEECCeec
Confidence 345678999999999999999999999999999999999999977544447889999999995 8999999999999876
Q ss_pred eecCcceEEeeCCc
Q psy15505 88 FFDGSLYEYVEDPT 101 (2400)
Q Consensus 88 ~~~~~~F~Y~enP~ 101 (2400)
.....|+|++||+
T Consensus 81 -s~~~~FeY~~~Pt 93 (95)
T 2cxk_A 81 -SNSVVFEYKSGPS 93 (95)
T ss_dssp -SCCEEEEECCC--
T ss_pred -CCceEEEEeCCCC
Confidence 4556799999996
No 23
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=99.30 E-value=4.6e-12 Score=128.17 Aligned_cols=73 Identities=16% Similarity=0.314 Sum_probs=66.2
Q ss_pred EEEEEecCceecCCCcEEEEEeecCCCCCcEEEEECCceeEEEEecCceEEEEcCCCCCCceeEeEeeeeEEEECCcee
Q psy15505 1010 VIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSESNTQHSFTELVQ 1088 (2400)
Q Consensus 1010 ~ItsIsP~~GP~sGGT~VTItGs~L~~gs~v~V~IG~~~C~i~s~s~t~I~C~Tp~~~~~~~v~V~~~~v~V~~d~~~~ 1088 (2400)
.|++|+|.+||.+|||+|+|+|.+|++|+++.|+||+.+|....+++..|.|.||++ .++.++|. |.+|++..
T Consensus 8 ~Itd~sP~~gp~sGGTkv~I~G~~L~~gs~~~~~fG~~~vpa~~~s~~vl~C~tPp~-~~G~v~~~-----v~~d~~~~ 80 (95)
T 2cxk_A 8 MVTDYSPEWSYPEGGVKVLITGPWQEASNNYSCLFDQISVPASLIQPGVLRCYCPAH-DTGLVTLQ-----VAFNNQII 80 (95)
T ss_dssp CCCEEECSEECTTCCCEEEEESSCCCCSSCEEEEETTEEEECEEEETTEEEEECCCC-CSEEEEEE-----EEETTEEC
T ss_pred EEEEECCCcccCCCCEEEEEEeECCCCCccEEEEECCEEEeEEEeECCEEEEEecCC-CCceEeEE-----EEECCeec
Confidence 589999999999999999999999999999999999987555557899999999995 88999999 99999875
No 24
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Probab=99.24 E-value=1.7e-11 Score=125.10 Aligned_cols=88 Identities=15% Similarity=0.224 Sum_probs=71.0
Q ss_pred ceeeEEEEecCCccCCCCcEEEEEEecCCCC-CcE-EEEeCCccceeE--EecCceEEEEcCCCCCccceeEEEEECCCe
Q psy15505 11 GTLRNQCVRQTKGPRSGGTILHISGSHMNAG-SRI-EAFIDDLPCRIT--SVEPEMAHCVTSASDRQRNGKLSMKFDKGT 86 (2400)
Q Consensus 11 ~~~~ItsIsPt~GP~aGGT~LTItG~~L~tG-S~v-~VtVG~~pC~I~--~v~~t~I~C~Tpps~~~g~~~V~V~~dg~~ 86 (2400)
+.|.|++|+|..||. ||+|||+|+||..+ +++ .|+||+.+|.+. .++.++|+|+|+++.. +..+|.|.+++..
T Consensus 6 p~P~It~i~P~~Gp~--GT~vTI~G~nlg~~~sdv~~V~vgg~~C~~~~~~~s~~~IvC~~~~~~~-~~g~V~V~v~~~~ 82 (99)
T 1uad_C 6 QPPLVTGISPNEGIP--WTKVTIRGENLGTGPTDLIGLTICGHNCLLTAEWMSASKIVCRVGQAKN-DKGDIIVTTKSGG 82 (99)
T ss_dssp CCCEEEEEESSEEST--TCEEEEEEECSCSSGGGEEEEEETTEECGGGCEEEETTEEEEECCCCSS-SSCCEEEEETTTE
T ss_pred CCCEEEEEECCCcCC--CCEEEEEEEeCCCCcccceEEEECCEEceEeeceeecCEEEEEeCCCCC-cceeEEEEECCCC
Confidence 568999999999988 79999999999888 676 799999999984 7788999999988643 4788888887542
Q ss_pred eeecCcceEEeeCCce
Q psy15505 87 RFFDGSLYEYVEDPTI 102 (2400)
Q Consensus 87 ~~~~~~~F~Y~enP~I 102 (2400)
+......|+|. ||.+
T Consensus 83 ~~~s~~~F~y~-~P~~ 97 (99)
T 1uad_C 83 RGTSTVSFKLL-KPEK 97 (99)
T ss_dssp ECEESSCCEEC-CC--
T ss_pred cEEecceEEEe-Ccee
Confidence 22345579999 7764
No 25
>3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus}
Probab=98.49 E-value=1.8e-06 Score=105.49 Aligned_cols=152 Identities=13% Similarity=0.092 Sum_probs=108.0
Q ss_pred CCCCCeEEEEe-----cCc---c--cCCCCcEEEEEeecCCCccCCccceEEEeCeeeecccceeecccEEEEEeCCCCC
Q psy15505 912 TCPNPEITSFQ-----PKS---G--PWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVCQVDGPGT 981 (2400)
Q Consensus 912 ~CP~P~ItsI~-----P~s---G--p~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~~C~v~~~~y~~st~IvC~tpps~~ 981 (2400)
.+.+|+|+.|. |.. . ....|+.|+|.|+||+. + .+|.|+|+...+.+ .|.++++|.-.+|...+
T Consensus 9 ~~~~i~It~vy~~~~~p~~~Ds~IT~a~pGd~ItItGsNL~~----v-tkV~FNdvea~fns-tyiTdtsI~VtIPs~aP 82 (439)
T 3orj_A 9 GSSVMNITGIYLEDAKSNVPDRLVDFARLGQLIRIEGEGFNG----L-KKVYINGYNCYFNP-VFVSNKSFLVSVNSKVP 82 (439)
T ss_dssp SCSSCEEEEEEEECTTSSSSEEEESEEETTCEEEEEEECCTT----C-CEEEETTEECCBCG-GGCCSSEEEEECCTTCC
T ss_pred ccCCceEEEEEecCCCccccccccccccCCCEEEEEeeCCCC----e-eEEEECCEEeeecc-ccccCCEEEEEcCCCCC
Confidence 56679999996 111 0 12458999999999954 3 48999999976443 57778999999886432
Q ss_pred CC----CccccEEEEEcccccccccceEEe--CcEEEEEecCceecCCCcEEEEEeecCCCCCcEEEEECC-ceeE-EEE
Q psy15505 982 RG----SREGPVIVKIEDFRGQSKDNYQFV--DPVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDD-LPCR-ITS 1053 (2400)
Q Consensus 982 ~~----~~~G~V~V~V~~~~~~S~~~FtY~--~P~ItsIsP~~GP~sGGT~VTItGs~L~~gs~v~V~IG~-~~C~-i~s 1053 (2400)
.. ...+.|.|...+ +.....|++. .|+|++|+|..++ +|+.|+|+|+||... .+|+|+| .+-. +..
T Consensus 83 ~G~vd~~VtnkI~VvTdg--Gt~ty~FtVlaPaPtITSISpe~~~--aGd~VTItGsNF~~i--skV~FgG~veaT~~~s 156 (439)
T 3orj_A 83 TTEADENVRNTIRLVKDG--GEYVYDFQIRAAAPSITKISNCMPN--VGEPIIVYGSGLTEI--AKVVFPGNVVVTEGII 156 (439)
T ss_dssp STTSCTTTTTEEEEEETT--EEEEEECEEECSCCEEEEESCSSCC--TTCEEEEEEECCTTC--CEEEETTTEEECSSCE
T ss_pred CccccccccceEEEEECC--CEEeeeeEEecCCCEEEEeCCCCCC--CCCEEEEEccCCCce--eEEEECCCeeEEEEEE
Confidence 11 134566665532 2333456666 6999999999874 689999999999877 5789986 5554 445
Q ss_pred e--cCceEEEEcCCCCC--CceeEeE
Q psy15505 1054 V--EPEMAHCVTSASDR--QRNGKLS 1075 (2400)
Q Consensus 1054 ~--s~t~I~C~Tp~~~~--~~~v~V~ 1075 (2400)
+ +.++|+-+.|.... .|.+.|.
T Consensus 157 vs~S~T~ItVtVPaGA~~~sG~ItVv 182 (439)
T 3orj_A 157 SDLDGEYFMVDMPAGVSEEGGSIFVE 182 (439)
T ss_dssp ECTTSSEEEEECCTTCCTTCBCCEEE
T ss_pred ecCCCCEEEEEecCCCcCCCceEEEE
Confidence 5 88999999999776 4544443
No 26
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=98.42 E-value=6.7e-07 Score=94.20 Aligned_cols=91 Identities=16% Similarity=0.295 Sum_probs=74.1
Q ss_pred CceeeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEeCCccceeEEecCceEEEEcCCCCCccceeEEEEECCCeeee
Q psy15505 10 DGTLRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSMKFDKGTRFF 89 (2400)
Q Consensus 10 ~~~~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtVG~~pC~I~~v~~t~I~C~Tpps~~~g~~~V~V~~dg~~~~~ 89 (2400)
+.+|.|+.|.|+.|+.+||+.++|.|.+|..| .+|.+|+..=-...++.+.|.|.+||+..+|.+.|++...+.+. .
T Consensus 3 ~~~P~I~~i~P~eG~~~GG~~V~I~G~nF~~G--lqV~FG~t~~w~e~itphairv~~PP~~~pG~V~VTl~~k~kqf-~ 79 (138)
T 3muj_A 3 EATPCIKAISPSEGWTTGGATVIIIGDNFFDG--LQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQF-C 79 (138)
T ss_dssp -CCCEEEEEESSEEETTCCCEEEEEEESCCTT--CEEEETTEEECEEEEETTEEEEECCCCSSCEEEEEEEEETTEEE-C
T ss_pred CCCCceeEecCCCCCccCCeEEEEeCCCcccC--CEEEECCeeeeeeeecccceEEECCCCCCCCceEEEEeecCccc-c
Confidence 45789999999999999999999999999888 67889986533334577899999999999999999999987554 3
Q ss_pred cCc--ceEEeeC--Ccee
Q psy15505 90 DGS--LYEYVED--PTID 103 (2400)
Q Consensus 90 ~~~--~F~Y~en--P~It 103 (2400)
.+. .|.|+.. |+|+
T Consensus 80 ~g~p~~F~Y~~l~ePtId 97 (138)
T 3muj_A 80 KGAPGRFVYTALNEPTID 97 (138)
T ss_dssp TTSCEEEEEECCCSCCHH
T ss_pred cCCCceEEEecCCCCccc
Confidence 343 6999875 5554
No 27
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=98.35 E-value=1.9e-06 Score=90.85 Aligned_cols=74 Identities=19% Similarity=0.298 Sum_probs=64.6
Q ss_pred CcEEEEEecCceecCCCcEEEEEeecCCCCCcEEEEECCceeEEEEecCceEEEEcCCCCCCceeEeEeeeeEEEECCce
Q psy15505 1008 DPVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSESNTQHSFTELV 1087 (2400)
Q Consensus 1008 ~P~ItsIsP~~GP~sGGT~VTItGs~L~~gs~v~V~IG~~~C~i~s~s~t~I~C~Tp~~~~~~~v~V~~~~v~V~~d~~~ 1087 (2400)
+|.|+.|.|+.||.+||+.|+|.|.||..| .+|.||+..--....+.+.|.|.+||+..+|.|+|+ +...+..
T Consensus 5 ~P~I~~i~P~eG~~~GG~~V~I~G~nF~~G--lqV~FG~t~~w~e~itphairv~~PP~~~pG~V~VT-----l~~k~kq 77 (138)
T 3muj_A 5 TPCIKAISPSEGWTTGGATVIIIGDNFFDG--LQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVT-----LSYKSKQ 77 (138)
T ss_dssp CCEEEEEESSEEETTCCCEEEEEEESCCTT--CEEEETTEEECEEEEETTEEEEECCCCSSCEEEEEE-----EEETTEE
T ss_pred CCceeEecCCCCCccCCeEEEEeCCCcccC--CEEEECCeeeeeeeecccceEEECCCCCCCCceEEE-----EeecCcc
Confidence 689999999999999999999999999877 689999976444456889999999999999999999 7777754
Q ss_pred e
Q psy15505 1088 Q 1088 (2400)
Q Consensus 1088 ~ 1088 (2400)
.
T Consensus 78 f 78 (138)
T 3muj_A 78 F 78 (138)
T ss_dssp E
T ss_pred c
Confidence 3
No 28
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.32 E-value=1.2e-06 Score=111.01 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=78.7
Q ss_pred ceeeEEEEecCCccCCCCcEEEEEEecCCCC-CcEEEEeCCccceeEEecCceEEEEcCCCCCccceeEEEEECCCe---
Q psy15505 11 GTLRNQCVRQTKGPRSGGTILHISGSHMNAG-SRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSMKFDKGT--- 86 (2400)
Q Consensus 11 ~~~~ItsIsPt~GP~aGGT~LTItG~~L~tG-S~v~VtVG~~pC~I~~v~~t~I~C~Tpps~~~g~~~V~V~~dg~~--- 86 (2400)
+.+.|++++|..|+ +||.|+|+|+||.+- +.+.|+||+.+|.++.++++.|.|++|+....|...|+|..++..
T Consensus 16 ~p~~i~~~~P~~g~--~~~~~~i~G~nfg~~~~~~~v~~~~~~~~v~~~~~~~i~~~vp~~~~~g~~~v~~~~~~~~~~~ 93 (430)
T 3tc9_A 16 KPVVISEFSPKEGG--LGTRMLLYGENFGSDISKIKVTIGGQDSKVVGAKGKSLYCVVPAKAYDGDIKLSILNDEGEEIA 93 (430)
T ss_dssp SCCEEEEEECSEEC--TTCEEEEEEECCCSCGGGEEEEETTEEECEEEECSSEEEEECCTTCTTCCEEEEEECTTSCEEE
T ss_pred CCCEEEEEcCCCCC--CCCEEEEEEEcCCCCccceEEEECCEEEEEEEECCCEEEEEeCCCCCCccEEEEEecCCcceee
Confidence 36699999999999 799999999999765 678999999999999999999999999987668888888777633
Q ss_pred eeecCcceEEeeCCceeee
Q psy15505 87 RFFDGSLYEYVEDPTIDSV 105 (2400)
Q Consensus 87 ~~~~~~~F~Y~enP~ItsI 105 (2400)
....+..|+|....+|+.+
T Consensus 94 ~~~~~~~F~y~~~~~VsT~ 112 (430)
T 3tc9_A 94 NTEANEKFVYQKKMLVTTF 112 (430)
T ss_dssp EEECSSCCEECCCEEEEEE
T ss_pred EEEEeeEEEEEEEeEEEEe
Confidence 1234567999988888765
No 29
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.31 E-value=2e-06 Score=109.08 Aligned_cols=72 Identities=24% Similarity=0.283 Sum_probs=65.0
Q ss_pred CcEEEEEecCceecCCCcEEEEEeecCCCC-CcEEEEECCceeEEEEecCceEEEEcCCCCCCceeEeEeeeeEEEECCc
Q psy15505 1008 DPVIKSIQPLQGPRSGGTILHISGSHMNAG-SRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSESNTQHSFTEL 1086 (2400)
Q Consensus 1008 ~P~ItsIsP~~GP~sGGT~VTItGs~L~~g-s~v~V~IG~~~C~i~s~s~t~I~C~Tp~~~~~~~v~V~~~~v~V~~d~~ 1086 (2400)
.|+|++++|..|+ +||+|+|+|+||++. +.+.|+||+++|.++.++++.|.|++|.....|.+.|+ |..++.
T Consensus 17 p~~i~~~~P~~g~--~~~~~~i~G~nfg~~~~~~~v~~~~~~~~v~~~~~~~i~~~vp~~~~~g~~~v~-----~~~~~~ 89 (430)
T 3tc9_A 17 PVVISEFSPKEGG--LGTRMLLYGENFGSDISKIKVTIGGQDSKVVGAKGKSLYCVVPAKAYDGDIKLS-----ILNDEG 89 (430)
T ss_dssp CCEEEEEECSEEC--TTCEEEEEEECCCSCGGGEEEEETTEEECEEEECSSEEEEECCTTCTTCCEEEE-----EECTTS
T ss_pred CCEEEEEcCCCCC--CCCEEEEEEEcCCCCccceEEEECCEEEEEEEECCCEEEEEeCCCCCCccEEEE-----EecCCc
Confidence 4589999999999 599999999999877 78999999999999999999999999998877888888 776664
No 30
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.15 E-value=7.9e-06 Score=103.78 Aligned_cols=70 Identities=20% Similarity=0.384 Sum_probs=64.2
Q ss_pred EEEEEecCceecCCCcEEEEEeecCCCC-CcEEEEECCceeEEEEecCceEEEEcCCCCCCceeEeEeeeeEEEECCc
Q psy15505 1010 VIKSIQPLQGPRSGGTILHISGSHMNAG-SRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSESNTQHSFTEL 1086 (2400)
Q Consensus 1010 ~ItsIsP~~GP~sGGT~VTItGs~L~~g-s~v~V~IG~~~C~i~s~s~t~I~C~Tp~~~~~~~v~V~~~~v~V~~d~~ 1086 (2400)
+|++++|..|+. ||+|+|+|+||++. +.++|+||+++|.++++++++|.|++|+....|.+.|+ |..++.
T Consensus 21 ~i~~~~P~~g~~--~~~~~i~G~nfg~~~~~~~v~~~~~~a~v~~~~~~~i~~~vp~~~~~g~~~v~-----v~~~~~ 91 (433)
T 4hw6_A 21 VVEKFLPTEGRK--GTRVVVYGRNFGNDVSKVKVTIGGYPAKVINVKGESLLCICPSKAYEGDVKVS-----VVGDDE 91 (433)
T ss_dssp EEEEEESSEECT--TCEEEEEEECCCSCGGGEEEEETTEEEEEEEECSSEEEEECCTTCTTCCEEEE-----EECTTS
T ss_pred EEEEECCCCCCC--CCEEEEEeECCCCCcceeEEEECCEEEEEEEeCCCEEEEEeCCCCCCCCEEEE-----EecCCc
Confidence 899999999998 99999999999877 78999999999999999999999999998877888887 776664
No 31
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=98.13 E-value=4.9e-06 Score=98.21 Aligned_cols=90 Identities=17% Similarity=0.291 Sum_probs=73.9
Q ss_pred ceeeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEeCCccceeEEecCceEEEEcCCCCCccceeEEEEECCCeeeec
Q psy15505 11 GTLRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSMKFDKGTRFFD 90 (2400)
Q Consensus 11 ~~~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtVG~~pC~I~~v~~t~I~C~Tpps~~~g~~~V~V~~dg~~~~~~ 90 (2400)
.+|.|++|+|+.||.+||+.++|.|.+|..| .+|.+|+..=-...++.+.|.|.|||+..+|.+.|++.+.+.+. ..
T Consensus 230 ~tP~IkaIsPnEG~~tGG~tV~IiGenFf~G--LQVvFGtt~vWselITphAIRV~tPPr~~PGvVdVTLs~ksKqf-~k 306 (402)
T 3mlp_A 230 ATPCIKAISPSEGWTTGGATVIIIGDNFFDG--LQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQF-CK 306 (402)
T ss_dssp SCCEEEECSSCEECTTCCCEEEEEEECCCTT--CEEEETTEEECEEEEETTEEEEECCCCSSCEEEEEEEEETTEEE-ST
T ss_pred CCcceEEecCCCCCccCCeEEEEeCCCcccC--CEEEEccEeeeeEEecccceEEECCCCCCCCceEEEEEecCccc-cc
Confidence 6789999999999999999999999999888 67888977643445688999999999999999999999998544 34
Q ss_pred Cc--ceEEeeC--Ccee
Q psy15505 91 GS--LYEYVED--PTID 103 (2400)
Q Consensus 91 ~~--~F~Y~en--P~It 103 (2400)
+. .|.|+.. |+|+
T Consensus 307 g~pgrF~YtALnePtId 323 (402)
T 3mlp_A 307 GTPGRFIYTALNEPTID 323 (402)
T ss_dssp TSCEEEEEC---CCTTT
T ss_pred CCCCceeeecCCCCccc
Confidence 43 6999864 5554
No 32
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=9.2e-06 Score=104.50 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=61.1
Q ss_pred CcEEEEEecCceecCCCcEEEEEeecCCCC-CcEEEEECCceeEEEEecCceEEEEcCCCCCCceeEeE
Q psy15505 1008 DPVIKSIQPLQGPRSGGTILHISGSHMNAG-SRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLS 1075 (2400)
Q Consensus 1008 ~P~ItsIsP~~GP~sGGT~VTItGs~L~~g-s~v~V~IG~~~C~i~s~s~t~I~C~Tp~~~~~~~v~V~ 1075 (2400)
.++|++++|..|+. ||+|+|+|+||++. +.++|+||+++|.++++++++|.|++|.....|.++|+
T Consensus 17 p~~i~~~~P~~G~~--~t~~~I~G~nFg~d~~~i~V~~~~~~a~v~~~~~~~i~~~vp~~~~~G~~~v~ 83 (496)
T 3kya_A 17 PVAISDFTPKEGGA--YQKLLIYGENFGTDVSKVKVKIGGKDAIVINVKSTYVYCFVPSGAFSGEIEIT 83 (496)
T ss_dssp CCEEEEEECSEECT--TCEEEEEEECCCSCGGGEEEEETTEEECEEEECSSEEEEECCTTCTTCCEEEE
T ss_pred CcEEEEEcCCCCCC--CCEEEEEeecCCCCcceeEEEECCEEEEEEEECCCEEEEEECCCCCCCcEEEE
Confidence 34699999999998 89999999999887 89999999999999999999999999998877888877
No 33
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.06 E-value=9.8e-06 Score=102.94 Aligned_cols=92 Identities=16% Similarity=0.280 Sum_probs=77.4
Q ss_pred eeeEEEEecCCccCCCCcEEEEEEecCCCC-CcEEEEeCCccceeEEecCceEEEEcCCCCCccceeEEEEECCCe---e
Q psy15505 12 TLRNQCVRQTKGPRSGGTILHISGSHMNAG-SRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSMKFDKGT---R 87 (2400)
Q Consensus 12 ~~~ItsIsPt~GP~aGGT~LTItG~~L~tG-S~v~VtVG~~pC~I~~v~~t~I~C~Tpps~~~g~~~V~V~~dg~~---~ 87 (2400)
.+.|++++|..|+. ||.|+|+|+||.+- +.++|+||+.+|.++.++.+.|.|++|+....|.+.|+|..++.. .
T Consensus 19 p~~i~~~~P~~g~~--~~~~~i~G~nfg~~~~~~~v~~~~~~a~v~~~~~~~i~~~vp~~~~~g~~~v~v~~~~~~~~~~ 96 (433)
T 4hw6_A 19 EIVVEKFLPTEGRK--GTRVVVYGRNFGNDVSKVKVTIGGYPAKVINVKGESLLCICPSKAYEGDVKVSVVGDDEAELKS 96 (433)
T ss_dssp CCEEEEEESSEECT--TCEEEEEEECCCSCGGGEEEEETTEEEEEEEECSSEEEEECCTTCTTCCEEEEEECTTSCEEEE
T ss_pred CCEEEEECCCCCCC--CCEEEEEeECCCCCcceeEEEECCEEEEEEEeCCCEEEEEeCCCCCCCCEEEEEecCCcceeeE
Confidence 34899999999987 99999999999765 678999999999999999999999999987677888888777642 2
Q ss_pred eecCcceEEeeCCceeee
Q psy15505 88 FFDGSLYEYVEDPTIDSV 105 (2400)
Q Consensus 88 ~~~~~~F~Y~enP~ItsI 105 (2400)
......|+|..+..|+.+
T Consensus 97 ~~~~~~F~y~~~~~VsTv 114 (433)
T 4hw6_A 97 GVCEAKFDYQYNYVVTTF 114 (433)
T ss_dssp EECSSCCEECCCEEEEEE
T ss_pred EEeeeEEEEEeeeEEeee
Confidence 234567999988877766
No 34
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=98.02 E-value=1.3e-05 Score=94.71 Aligned_cols=74 Identities=19% Similarity=0.303 Sum_probs=66.0
Q ss_pred CcEEEEEecCceecCCCcEEEEEeecCCCCCcEEEEECCceeEEEEecCceEEEEcCCCCCCceeEeEeeeeEEEECCce
Q psy15505 1008 DPVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSESNTQHSFTELV 1087 (2400)
Q Consensus 1008 ~P~ItsIsP~~GP~sGGT~VTItGs~L~~gs~v~V~IG~~~C~i~s~s~t~I~C~Tp~~~~~~~v~V~~~~v~V~~d~~~ 1087 (2400)
+|.|+.|+|..||.+||+.|+|.|.+|..| .+|.||+..--...++.+.|.|.+||+..+|.+.|+ +...+..
T Consensus 231 tP~IkaIsPnEG~~tGG~tV~IiGenFf~G--LQVvFGtt~vWselITphAIRV~tPPr~~PGvVdVT-----Ls~ksKq 303 (402)
T 3mlp_A 231 TPCIKAISPSEGWTTGGATVIIIGDNFFDG--LQVIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVT-----LSYKSKQ 303 (402)
T ss_dssp CCEEEECSSCEECTTCCCEEEEEEECCCTT--CEEEETTEEECEEEEETTEEEEECCCCSSCEEEEEE-----EEETTEE
T ss_pred CcceEEecCCCCCccCCeEEEEeCCCcccC--CEEEEccEeeeeEEecccceEEECCCCCCCCceEEE-----EEecCcc
Confidence 799999999999999999999999999887 589999987655567899999999999999999999 8777754
Q ss_pred e
Q psy15505 1088 Q 1088 (2400)
Q Consensus 1088 ~ 1088 (2400)
.
T Consensus 304 f 304 (402)
T 3mlp_A 304 F 304 (402)
T ss_dssp E
T ss_pred c
Confidence 3
No 35
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.01 E-value=2.1e-05 Score=98.95 Aligned_cols=73 Identities=11% Similarity=0.233 Sum_probs=65.5
Q ss_pred CcEEEEEecCceecCCCcEEEEEeecCCCC-CcEEEEECC----ceeEEEEecCceEEEEcCCCCCCceeEeEeeeeEEE
Q psy15505 1008 DPVIKSIQPLQGPRSGGTILHISGSHMNAG-SRIEAFIDD----LPCRITSVEPEMAHCVTSASDRQRNGKLSESNTQHS 1082 (2400)
Q Consensus 1008 ~P~ItsIsP~~GP~sGGT~VTItGs~L~~g-s~v~V~IG~----~~C~i~s~s~t~I~C~Tp~~~~~~~v~V~~~~v~V~ 1082 (2400)
.|+|++++|..|. +||.|+|+|+||++. +.+.|+||+ ++|.++..+++.|.|+.|.... +..+|+ |.
T Consensus 17 ~~~~~~~~p~~g~--~~~~~~i~g~nfg~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~vp~~~~-g~~~i~-----v~ 88 (409)
T 3hrp_A 17 PVTVESFMPVEGK--LREKVIVKGSNFGTDKSKVKVYFVDEAAERLSTVIGIDNNTLYCLAPRQLP-GGNRIK-----VI 88 (409)
T ss_dssp CCEEEEEECSEEC--TTCEEEEEEECCCSCGGGEEEEEECSSCEEEEEEEEEETTEEEEECCSCCS-EEEEEE-----EE
T ss_pred CcEEEEEcCCCCC--CCcEEEEEeEcCCCCccceEEEECCcccceEEEEEEECCCEEEEEECCCCC-CcEEEE-----EE
Confidence 3489999999998 599999999999887 889999999 9999999999999999999766 788888 88
Q ss_pred ECCcee
Q psy15505 1083 FTELVQ 1088 (2400)
Q Consensus 1083 ~d~~~~ 1088 (2400)
+++...
T Consensus 89 ~~~~~~ 94 (409)
T 3hrp_A 89 VDGKEV 94 (409)
T ss_dssp ETTEEE
T ss_pred ECCeeE
Confidence 888643
No 36
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.00 E-value=1.4e-05 Score=100.59 Aligned_cols=91 Identities=9% Similarity=0.238 Sum_probs=78.7
Q ss_pred ceeeEEEEecCCccCCCCcEEEEEEecCCCC-CcEEEEeCC----ccceeEEecCceEEEEcCCCCCccceeEEEEECCC
Q psy15505 11 GTLRNQCVRQTKGPRSGGTILHISGSHMNAG-SRIEAFIDD----LPCRITSVEPEMAHCVTSASDRQRNGKLSMKFDKG 85 (2400)
Q Consensus 11 ~~~~ItsIsPt~GP~aGGT~LTItG~~L~tG-S~v~VtVG~----~pC~I~~v~~t~I~C~Tpps~~~g~~~V~V~~dg~ 85 (2400)
+.+.|++++|..|. +||.|+|+|+||.+- +.++|+||+ .+|.++..+.+.|.|++|.... +...|+|.+++.
T Consensus 16 ~~~~~~~~~p~~g~--~~~~~~i~g~nfg~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~vp~~~~-g~~~i~v~~~~~ 92 (409)
T 3hrp_A 16 QPVTVESFMPVEGK--LREKVIVKGSNFGTDKSKVKVYFVDEAAERLSTVIGIDNNTLYCLAPRQLP-GGNRIKVIVDGK 92 (409)
T ss_dssp SCCEEEEEECSEEC--TTCEEEEEEECCCSCGGGEEEEEECSSCEEEEEEEEEETTEEEEECCSCCS-EEEEEEEEETTE
T ss_pred CCcEEEEEcCCCCC--CCcEEEEEeEcCCCCccceEEEECCcccceEEEEEEECCCEEEEEECCCCC-CcEEEEEEECCe
Confidence 35599999999998 799999999999666 789999999 9999999999999999998754 788999999986
Q ss_pred eeeecCcceEEeeCCceeee
Q psy15505 86 TRFFDGSLYEYVEDPTIDSV 105 (2400)
Q Consensus 86 ~~~~~~~~F~Y~enP~ItsI 105 (2400)
.. ..+..|.|..+..|+.+
T Consensus 93 ~~-~~~~~F~y~~~~~v~tv 111 (409)
T 3hrp_A 93 EV-TTDGTFKYEQAQNVSTI 111 (409)
T ss_dssp EE-ECSSCEEECCCEEEEEE
T ss_pred eE-EEeeeEEEecccEEEEe
Confidence 43 34567999988777766
No 37
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.97 E-value=1.2e-05 Score=103.49 Aligned_cols=92 Identities=10% Similarity=0.159 Sum_probs=75.2
Q ss_pred eeeEEEEecCCccCCCCcEEEEEEecCCCC-CcEEEEeCCccceeEEecCceEEEEcCCCCCccceeEEEEECCC-eeee
Q psy15505 12 TLRNQCVRQTKGPRSGGTILHISGSHMNAG-SRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSMKFDKG-TRFF 89 (2400)
Q Consensus 12 ~~~ItsIsPt~GP~aGGT~LTItG~~L~tG-S~v~VtVG~~pC~I~~v~~t~I~C~Tpps~~~g~~~V~V~~dg~-~~~~ 89 (2400)
.+.|++++|..|+. ||.|+|+|+||.+- +.++|+||+.+|.++.++++.|.|++|.....|.++|+|..+.. +...
T Consensus 17 p~~i~~~~P~~G~~--~t~~~I~G~nFg~d~~~i~V~~~~~~a~v~~~~~~~i~~~vp~~~~~G~~~v~v~~~~~~~~~~ 94 (496)
T 3kya_A 17 PVAISDFTPKEGGA--YQKLLIYGENFGTDVSKVKVKIGGKDAIVINVKSTYVYCFVPSGAFSGEIEITVGEGENAVTTT 94 (496)
T ss_dssp CCEEEEEECSEECT--TCEEEEEEECCCSCGGGEEEEETTEEECEEEECSSEEEEECCTTCTTCCEEEEESCGGGCEEEE
T ss_pred CcEEEEEcCCCCCC--CCEEEEEeecCCCCcceeEEEECCEEEEEEEECCCEEEEEECCCCCCCcEEEEEEecCCceEEE
Confidence 56899999999998 89999999999766 78999999999999999999999999997766777777765542 1223
Q ss_pred cCcceEEeeCCceeee
Q psy15505 90 DGSLYEYVEDPTIDSV 105 (2400)
Q Consensus 90 ~~~~F~Y~enP~ItsI 105 (2400)
.+..|+|...-+|+.+
T Consensus 95 ~~~~F~Y~~~~~VsTl 110 (496)
T 3kya_A 95 ASTTFSYEKKMVVGTL 110 (496)
T ss_dssp CSSCCEECCCEEEEEE
T ss_pred ecceEEEEEEEEEEEe
Confidence 4567999876666655
No 38
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=97.92 E-value=1e-05 Score=107.20 Aligned_cols=131 Identities=17% Similarity=0.406 Sum_probs=58.5
Q ss_pred cccccc----------CceeeEEEEEEeecccccCceeEEEEeecCceEEEEEEEcCceeEeecee---eee-cCCceeE
Q psy15505 773 AACVAS----------NSKKAVNVKVHIVGQFIAQTRFVCQFNIEGRVTSVNAQLLGDVIYCDPME---FTY-TSRLSNI 838 (2400)
Q Consensus 773 ~~Cvss----------~~~~~VtL~v~nLP~~~~~~~~~C~f~i~G~~~~v~a~~~~s~i~C~~~~---~~y-~~~~~~~ 838 (2400)
++|+.+ ...++|+|.|.+||.+.. +|+|.|+ .....+|++.++.|.|.... +.- ......+
T Consensus 526 ~qC~~i~~~P~~~s~~~~~~~v~l~v~~lP~l~~--~~~C~fg---~~~~~~a~~~~~~v~C~sP~~~~~p~~p~g~d~~ 600 (681)
T 3oky_A 526 SQCMSLEVHPNSISVSDHSRLLSLVVNDAPNLSE--GIACAFG---NLTEVEGQVSGSQVICISPGPKDVPVIPLDQDWF 600 (681)
T ss_dssp GGCCEEEEESSEEETTSCSCEEEEEEETCCCCTT--CEEEEET---TTEEEECEEETTEEEEECCCTTTSCCCC--CCEE
T ss_pred CccceeeecCccccccccccEEEEeccCCCCCCC--CCEEEcC---CcccccceecCCeeEeCCCCHHhCCCCCCCceEE
Confidence 689875 234479999999998875 3999997 22344677888899997542 111 1112678
Q ss_pred EEEEEEEECC-CccCCCCCCceEEEeecccCCCCccccccCCCcccceecCCCCCcccc-ccCCCCCCCcccCCCCCCC
Q psy15505 839 NASFAVIWGG-SKPLDNPDNVHVNIYRCRDLANNCGLCLALPEKYGCGWCQSSKRCEIF-EQCDKGLGTWLNRNHTCPN 915 (2400)
Q Consensus 839 ~v~l~v~w~g-~~~ID~~~~~~VtLYnCs~~~~dCs~Cl~ad~~y~C~WC~~~~~C~~~-~~C~~~~~~w~~~~~~CP~ 915 (2400)
.|.+++..+. +..| +...+++|||+... .|..|.+ ..|+|.||...+.|+.. ..|... .+-.+....||.
T Consensus 601 ~v~l~l~~~~~~~~~---~s~~f~FYdCs~~~-~C~sCvs--s~w~C~WC~~~h~Cth~~~~c~~~-~g~~~~~~~~~~ 672 (681)
T 3oky_A 601 GLELQLRSKETGKIF---VSTEFKFYNCSAHQ-LCLSCVN--SAFRCHWCKYRNLCTHDPTTCSFQ-EGRINVSEDCPQ 672 (681)
T ss_dssp EEEEEEEETTTCCEE---EEEEEEEECCC--------------------------------------------------
T ss_pred EEEEEEEeccCCCce---eEEeeEEEcCccCc-ccccccc--CCcCCCccCCCceeccCCCCCccc-cccccCccCCCC
Confidence 8888888752 2222 34578999999964 6999986 57999999999999987 467532 122233346764
No 39
>3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus}
Probab=97.73 E-value=0.00017 Score=88.36 Aligned_cols=126 Identities=18% Similarity=0.311 Sum_probs=91.7
Q ss_pred CCCcEEEEEEecCCCCCcEEEEeCCccceeE--EecCceEEEEcCCCCCcc------ceeEEEEECCCeeeecCcceEEe
Q psy15505 26 SGGTILHISGSHMNAGSRIEAFIDDLPCRIT--SVEPEMAHCVTSASDRQR------NGKLSMKFDKGTRFFDGSLYEYV 97 (2400)
Q Consensus 26 aGGT~LTItG~~L~tGS~v~VtVG~~pC~I~--~v~~t~I~C~Tpps~~~g------~~~V~V~~dg~~~~~~~~~F~Y~ 97 (2400)
..|+.|+|+|+||+... +|.+|++.-.+. .+++++|+=..|+....+ ...|.|.-++..... .|++.
T Consensus 36 ~pGd~ItItGsNL~~vt--kV~FNdvea~fnstyiTdtsI~VtIPs~aP~G~vd~~VtnkI~VvTdgGt~ty---~FtVl 110 (439)
T 3orj_A 36 RLGQLIRIEGEGFNGLK--KVYINGYNCYFNPVFVSNKSFLVSVNSKVPTTEADENVRNTIRLVKDGGEYVY---DFQIR 110 (439)
T ss_dssp ETTCEEEEEEECCTTCC--EEEETTEECCBCGGGCCSSEEEEECCTTCCSTTSCTTTTTEEEEEETTEEEEE---ECEEE
T ss_pred cCCCEEEEEeeCCCCee--EEEECCEEeeeccccccCCEEEEEcCCCCCCccccccccceEEEEECCCEEee---eeEEe
Confidence 46999999999997664 788899876443 247788988888654444 346777777775532 57776
Q ss_pred e-CCceeeecCCCcCCCCCCCCceeccCCeEEEEEeccccccccCeEEEEEcCceeeeeeEEe--ccceeEEecCCcc
Q psy15505 98 E-DPTIDSVDSGIQSGQGLKYPKGFPAGGTRINVVGKNLLYIKDPHIYVVYKDKKFVNSCEVM--SNNYMICTAPTIT 172 (2400)
Q Consensus 98 e-nP~ItsIsP~~~~~~~~~P~~Sf~SGG~~ITV~G~nFd~Vq~p~m~V~~~~~~~~~~C~v~--n~T~I~C~sPal~ 172 (2400)
. .|+|++++|. +..+|..|+|+|.||+.+. .|.+++......+... +++.|..+.|+-.
T Consensus 111 aPaPtITSISpe------------~~~aGd~VTItGsNF~~is----kV~FgG~veaT~~~svs~S~T~ItVtVPaGA 172 (439)
T 3orj_A 111 AAAPSITKISNC------------MPNVGEPIIVYGSGLTEIA----KVVFPGNVVVTEGIISDLDGEYFMVDMPAGV 172 (439)
T ss_dssp CSCCEEEEESCS------------SCCTTCEEEEEEECCTTCC----EEEETTTEEECSSCEECTTSSEEEEECCTTC
T ss_pred cCCCEEEEeCCC------------CCCCCCEEEEEccCCCcee----EEEECCCeeEEEEEEecCCCCEEEEEecCCC
Confidence 5 5999999872 3468999999999999985 6788763222224444 6799999999843
No 40
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=97.51 E-value=1.3e-05 Score=103.39 Aligned_cols=58 Identities=38% Similarity=0.908 Sum_probs=45.9
Q ss_pred EEECCceeeeeccccCCCCCCCcCccCCCCcCCCCCCCceeecCCcccc-cc-cCCccceE
Q psy15505 1081 HSFTELVQTLTCWDCLNRKDPYCGWCSLDNKCSLRSDCQDAAKDPLSWI-SY-KSGRCTTI 1139 (2400)
Q Consensus 1081 V~~d~~~~~~~C~~c~~~~dpycgwC~l~~rCs~~~~cF~Y~~~P~~w~-s~-~~~~c~~I 1139 (2400)
|.+.++....+|.+|+...|||||||.++++|+++++|-.-.+ |++|| ++ ..+||..=
T Consensus 461 vpl~~C~~y~sC~~Cl~ArDPyCgW~~~~~~Cs~~~~C~~~~~-~~~wl~s~~~~~~~~~~ 520 (528)
T 3ol2_B 461 VPVASCAQHLDCASCLAHRDPYCGWCVLLGRCSRRSECSRGQG-PEQWLWSFQPELGCLQG 520 (528)
T ss_dssp EESCCGGGCCSHHHHHHSCCTTCEEETTTTEEECGGGCC-----CCCEEETTSCCSCC---
T ss_pred EEhhhCcCcCcHhHHhhCCCCCCcccCCCCeecCHhHcCCCCc-cchhhcccCcchhhhcc
Confidence 6777888888999999999999999999999999999977644 77999 66 66888763
No 41
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=97.42 E-value=1.1e-05 Score=104.90 Aligned_cols=59 Identities=34% Similarity=0.719 Sum_probs=48.9
Q ss_pred EEECCceeeeeccccCCCCCCCcCccCCCCcCCCCCCCceeecCCcccccccCCccceEEE
Q psy15505 1081 HSFTELVQTLTCWDCLNRKDPYCGWCSLDNKCSLRSDCQDAAKDPLSWISYKSGRCTTITS 1141 (2400)
Q Consensus 1081 V~~d~~~~~~~C~~c~~~~dpycgwC~l~~rCs~~~~cF~Y~~~P~~w~s~~~~~c~~Its 1141 (2400)
|.+..+.+..+|.+|+...|||||||.+++||+++++|-.-.. +++|+. +.+||+.|+.
T Consensus 476 vpl~~C~~y~sC~~Cl~arDPyCgWc~~~~~C~~~~~C~~~~~-~~~~~~-~~~~C~~~~~ 534 (539)
T 3al9_A 476 VPVESCEQYTTCGECLSSGDPHCGWCALHNMCSRRDKCQRAWE-ANRFAA-SISQCMSSRE 534 (539)
T ss_dssp EESCCGGGCCSHHHHTTSCCTTCEEEGGGTEEECGGGSTTTTS-TTSEEC-SSHHHHHHC-
T ss_pred eehhhCcCcCCHHHHhcCCCCCCceecCCCceechhhcCCccc-cccccC-CCCcCcChhh
Confidence 7777899999999999999999999999999999999965332 556753 5689998865
No 42
>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB: 3nvq_B*
Probab=97.24 E-value=3.9e-05 Score=96.32 Aligned_cols=57 Identities=25% Similarity=0.779 Sum_probs=48.3
Q ss_pred EEECCceeeeeccccCCCCCCCcCccCCCCcCCCCCCCceeecCCccccccc--CCccce
Q psy15505 1081 HSFTELVQTLTCWDCLNRKDPYCGWCSLDNKCSLRSDCQDAAKDPLSWISYK--SGRCTT 1138 (2400)
Q Consensus 1081 V~~d~~~~~~~C~~c~~~~dpycgwC~l~~rCs~~~~cF~Y~~~P~~w~s~~--~~~c~~ 1138 (2400)
|.+.++....+|.+|+...|||||||.+++||+++++|-.-.+ |++|++.. .+|||.
T Consensus 416 VPl~~C~~y~sC~~Cl~ArDPYCGW~~~~~~Csr~~eC~rs~~-~~~Wl~~~~~~~qCp~ 474 (476)
T 3nvn_B 416 IRVANCNKHKSCSECLTATDPHCGWCHSLQRCTFQGDCVHSEN-LENWLDISSGAKKCPG 474 (476)
T ss_dssp EESCCCTTCCSHHHHHTTCCTTEEEETTTTEEEEGGGSCCCSS-CCCEECTTTCGGGSTT
T ss_pred EEhhhCcCCCchhHHhhCCCCCCcccCCCCccCCHhhccCccc-ccccccccCCCCCCCC
Confidence 5666787788899999999999999999999999999977644 67899753 589985
No 43
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=96.84 E-value=8.5e-05 Score=98.83 Aligned_cols=60 Identities=20% Similarity=0.463 Sum_probs=46.2
Q ss_pred EEECCceeeeeccccCCCCCCCcCccCCCCcCCCCCCCceeecCCcccccccCCccceEE
Q psy15505 1081 HSFTELVQTLTCWDCLNRKDPYCGWCSLDNKCSLRSDCQDAAKDPLSWISYKSGRCTTIT 1140 (2400)
Q Consensus 1081 V~~d~~~~~~~C~~c~~~~dpycgwC~l~~rCs~~~~cF~Y~~~P~~w~s~~~~~c~~It 1140 (2400)
|.+..+.+..+|.+|+...|||||||.++++|+++.+|-.-...-.+|++....+|+.++
T Consensus 477 vpl~~C~~y~sC~~Cl~arDPyCgW~~~~~~C~~~~~c~~~~~~~~Qd~~~~~~~C~~~~ 536 (663)
T 1olz_A 477 APLAFCGKHGTCEDCVLARDPYCAWSPPTATCVALHQTESPSRGLIQEMSGDASVCPDKS 536 (663)
T ss_dssp EESCCGGGCCSHHHHHHTTCTTEEEETTTTEEEETTTCCTTGGGCBCCTTCCGGGSSSCC
T ss_pred EEchhCCCCCCHHHHhcCCCCCccccCCCCceeCcccCCCccccceeecccCcccCCCcc
Confidence 667789888999999999999999999999999999993111111234555668999875
No 44
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=96.63 E-value=0.00031 Score=89.80 Aligned_cols=39 Identities=36% Similarity=0.441 Sum_probs=0.0
Q ss_pred hhheecccchhhhhhhhcccccccccccccccccCcccc
Q psy15505 342 LIAYRRKSTENTRVLKNMQEQMDILELRVAAECKAPIYH 380 (2400)
Q Consensus 342 ii~yrRKs~eaer~~~k~~~Qme~lE~sV~dEC~~~~~~ 380 (2400)
+++|||||++|+|+|++++.|||+||++|++||+++|+.
T Consensus 17 ~~~yrrKs~~~~r~~kk~~~Qme~LE~~Vr~ecK~aFaE 55 (644)
T 3hm6_X 17 RGSYRRKSKQALRDYKKVQIQLENLESSVRDRCKKEFTD 55 (644)
T ss_dssp ---------------------------------------
T ss_pred EEEEEeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466999999999999999999999999999999999983
No 45
>1wer_A P120GAP; GTPase activation, RAS, signal transduction, growth regulation, cancer; 1.60A {Homo sapiens} SCOP: a.116.1.2 PDB: 1wq1_G*
Probab=96.13 E-value=0.0077 Score=74.10 Aligned_cols=189 Identities=20% Similarity=0.276 Sum_probs=126.2
Q ss_pred chhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCCCCchhhcccccCCCcceeeeecccCCCeeeee---cc
Q psy15505 2009 TLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLIKNPNFVFDI---HK 2085 (2400)
Q Consensus 2009 tlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i~d~~~~h~WKtN~lpLRFWvn~ikNp~fvfDi---~~ 2085 (2400)
.|..+++.++++|.+..+ .+|..+||+|--+=+.+.++--.++++.+.==++.+-|||..-.|-||+- |++ +.
T Consensus 134 ~L~~~~~~~~~~I~~s~~---~~P~~lR~i~~~l~~~~~~kfp~~~~~~~~~V~~fiFlRfi~PAIvsP~~-fgl~~~~p 209 (334)
T 1wer_A 134 HLLNILSELVEKIFMASE---ILPPTLRYIYGCLQKSVQHKWPTNTTMRTRVVSGFVFLRLICPAILNPRM-FNIISDSP 209 (334)
T ss_dssp HHHHHHHHHHHHHHTTGG---GSCHHHHHHHHHHHHHHHHHSTTCSSHHHHHHHHHHTTTTHHHHHHCGGG-GTSCSSCC
T ss_pred HHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHhHHhCChHh-cCCCCCCC
Confidence 467888889999998865 79999999999998887776444445444444788999999999999986 333 33
Q ss_pred CCCCCcceeeehhhhccccccCCcccCCC---CCCccccccccchhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhh
Q psy15505 2086 SNIVDSCLSVVAQTFMDSCSTSDHRLGKD---SPSSKLLYAKDIPAYKEWVERYYSDIKSMQAISDQDMNAMLAEESRLH 2162 (2400)
Q Consensus 2086 s~~vd~~lsviaqtfmdacs~se~~lgkd---spsnklLyakdip~yk~~v~~yy~~I~~~p~~s~qem~~~l~~~s~~~ 2162 (2400)
++..-..|..||+++....+...-. +|+ .|.|.. |-..++.+.+|+.+|.+.|...+. + +++
T Consensus 210 ~~~~rr~L~lIaKvLQ~lan~~~f~-~ke~~m~~lN~f-----i~~~~~~~~~fl~~i~~v~~~~~~-~-----~~~--- 274 (334)
T 1wer_A 210 SPIAARTLILVAKSVQNLANLVEFG-AKEPYMEGVNPF-----IKSNKHRMIMFLDELGNVPELPDT-T-----EHS--- 274 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCCC-TTSGGGGGGHHH-----HHHHHHHHHHHHHHHTCCCSCCCC-C-----CCC---
T ss_pred CHHHHHHHHHHHHHHHHHHccccCC-CccHHHHHHHHH-----HHHHHHHHHHHHHHhCCCCCcccc-c-----ccc---
Confidence 5566778999999988766543211 222 222321 234578899999999988776541 0 111
Q ss_pred cccccHHHHHHHHHHHHHhhHHHHHHHhhcChhhHhhhHHHHHHHHHHhcc-CceeecC
Q psy15505 2163 NSEFSTNCALYELYTYASKYNEQLTVTLEEDEFSQKQRLAYKLEQKSNAGM-GKQKYAN 2220 (2400)
Q Consensus 2163 ~~~f~~~~al~ely~y~~~y~~~i~~~L~~d~~~~~~~l~~~l~~v~~~~~-~~~~~~~ 2220 (2400)
.-.....+.-|.+++.++.++|-...++. .++ ++=-.||..|..+++ -+.+|.+
T Consensus 275 --~~~~~~ei~~lH~ll~~~~~~i~~~s~~~-~~~-~~~~~~l~~~~~~~~~~~~~~~~ 329 (334)
T 1wer_A 275 --RTDLSRDLAALHEICVAHSDELRTLSNER-GAQ-QHVLKKLLAITELLQQKQNQYTK 329 (334)
T ss_dssp --CCCCHHHHHHHHHHHHHTHHHHHHHHTSC-STH-HHHHHHHHHHHHHHHHHHHCCC-
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHhhhhcc-ccc-ccchhhHHHHHHHHhhhHHHHHH
Confidence 11334556666778888999997754443 233 333457777777774 3456665
No 46
>4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens}
Probab=95.49 E-value=0.002 Score=83.83 Aligned_cols=46 Identities=35% Similarity=0.858 Sum_probs=36.5
Q ss_pred EEEC--CceeeeeccccCCCCCCC-cCccCCCCcCCCCCCCceeecCCcccccccCCccc
Q psy15505 1081 HSFT--ELVQTLTCWDCLNRKDPY-CGWCSLDNKCSLRSDCQDAAKDPLSWISYKSGRCT 1137 (2400)
Q Consensus 1081 V~~d--~~~~~~~C~~c~~~~dpy-cgwC~l~~rCs~~~~cF~Y~~~P~~w~s~~~~~c~ 1137 (2400)
|.+. ++.+..+|.+|+...||| |||| ++||+++++| |..|.. .+||
T Consensus 479 vpv~~~~C~~y~sC~~Cl~a~DPy~CgWc--~~~Ct~~~~C------~~~w~q---~~CP 527 (527)
T 4fww_A 479 VPIQGPGCRHFLTCGRCLRAWHFMGCGWC--GNMCGQQKEC------PGSWQQ---DHCP 527 (527)
T ss_dssp EETTCSCGGGCCSHHHHHHSCGGGCCEEC--SSSEECGGGS------TTTCBC---SCCC
T ss_pred EeccccCCCCCCCHHHHhcCCCCCcCcCC--CCEeeChhhC------cChhhc---ccCC
Confidence 4443 578888999999889998 9999 6999999999 456742 3465
No 47
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=93.71 E-value=0.0082 Score=78.06 Aligned_cols=39 Identities=26% Similarity=0.657 Sum_probs=34.6
Q ss_pred EEECCceeeeecc-ccCCCCCCCcCccCCCCcCCCCCCCc
Q psy15505 1081 HSFTELVQTLTCW-DCLNRKDPYCGWCSLDNKCSLRSDCQ 1119 (2400)
Q Consensus 1081 V~~d~~~~~~~C~-~c~~~~dpycgwC~l~~rCs~~~~cF 1119 (2400)
|.+..+....+|. +|+...|||||||.++.+|++...|.
T Consensus 495 VPl~~C~~y~sC~~~Cl~ArDPYCGW~~~~~~C~~~~~~~ 534 (565)
T 3oky_B 495 VPLGRCERHGKCKKTCIASRDPYCGWVRESGSCAHLSPLS 534 (565)
T ss_dssp EESCCCGGGTTCHHHHHHTCCTTEEEETTTTEEEECCTTC
T ss_pred eehhhCcCcccchhhhhhcCCCCCcccCCCCceeeccCCC
Confidence 6677888888898 89999999999999999999988774
No 48
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=91.68 E-value=0.029 Score=74.69 Aligned_cols=34 Identities=26% Similarity=0.608 Sum_probs=28.6
Q ss_pred EEECCceee-eeccccCCCCCCCcCccCCCCcCCCCC
Q psy15505 1081 HSFTELVQT-LTCWDCLNRKDPYCGWCSLDNKCSLRS 1116 (2400)
Q Consensus 1081 V~~d~~~~~-~~C~~c~~~~dpycgwC~l~~rCs~~~ 1116 (2400)
|.+..+.+. ..|.+|+...|||||||. ++|++..
T Consensus 495 VPl~~C~~y~~sC~~Cl~ArDPYCGW~~--~~Csr~~ 529 (667)
T 4gz8_A 495 LPLHRCDIYGKACAECCLARDPYCAWDG--SSCSRYF 529 (667)
T ss_dssp EESCCGGGSCSSHHHHHHTCCTTEECCS--SSCEECC
T ss_pred EEhhhccCccccHHHHhcCCCCCCCCcc--CcCeeEC
Confidence 667788876 579999999999999994 8999843
No 49
>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.60 E-value=0.95 Score=47.24 Aligned_cols=86 Identities=16% Similarity=0.268 Sum_probs=58.7
Q ss_pred CCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCe----------eeecccceeecccEEEEEeCCCCCCCC
Q psy15505 915 NPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGI----------TCQPYESLYNRTTQIVCQVDGPGTRGS 984 (2400)
Q Consensus 915 ~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~----------~C~v~~~~y~~st~IvC~tpps~~~~~ 984 (2400)
.|.|..++-.+||..||..|-|.|.||. .|+ .|.+-.. ...+.. .......|+|+|||... ..
T Consensus 8 ~P~I~k~s~~s~~v~GG~Ev~Ll~~k~~---kd~--kV~F~E~~~dG~~~WE~~a~f~~-d~~~q~aivf~tPpY~~-~~ 80 (114)
T 2yrp_A 8 LPQVEAYSPSACSVRGGEELVLTGSNFL---PDS--KVVFIERGPDGKLQWEEEATVNR-LQSNEVTLTLTVPEYSN-KR 80 (114)
T ss_dssp CCEEEEEESSCEETTCCSEEEEEEESCC---TTC--EEEEECBCTTSCBCCCCBCCBCT-TTCBTTEEEEECCCCSC-CS
T ss_pred CCEEEEecCcccccCCCCEEEEEecccC---CCC--EEEEEEECCCCCcceEEeeEECh-HHcccccEEEecCCCCC-Cc
Confidence 5999999999999999999999999994 355 5665321 011111 11123579999999752 45
Q ss_pred ccccEEEEEc---cc-ccccccceEEe
Q psy15505 985 REGPVIVKIE---DF-RGQSKDNYQFV 1007 (2400)
Q Consensus 985 ~~G~V~V~V~---~~-~~~S~~~FtY~ 1007 (2400)
...+|.|.+. +. ....+..|+|.
T Consensus 81 I~~pV~V~~~l~~~~rk~Se~~~FtY~ 107 (114)
T 2yrp_A 81 VSRPVQVYFYVSNGRRKRSPTQSFRFL 107 (114)
T ss_dssp CSSCEEEEEEEECSSSCBCCCEEEEEE
T ss_pred cCCCeEEEEEECCCCCcccCCcCcEEe
Confidence 5567777664 22 24557889886
No 50
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=90.60 E-value=0.031 Score=73.22 Aligned_cols=36 Identities=28% Similarity=0.639 Sum_probs=31.0
Q ss_pred EEECCceeee-eccccCCCCCCCcCccCCCCcCCCCCCC
Q psy15505 1081 HSFTELVQTL-TCWDCLNRKDPYCGWCSLDNKCSLRSDC 1118 (2400)
Q Consensus 1081 V~~d~~~~~~-~C~~c~~~~dpycgwC~l~~rCs~~~~c 1118 (2400)
|.+.++.... .|.+|+...||||||| +++|++...|
T Consensus 444 VPl~~C~~y~~sC~~Cl~ArDPYCGWc--~~~C~~~~~~ 480 (590)
T 3nvq_A 444 VPLDLCEVYGGGCHGCLMSRDPYCGWD--QGRCISIYSS 480 (590)
T ss_dssp EETTCCTTCCSHHHHHHHTCCTTEEEE--TTEEEETTSS
T ss_pred cchhhccccccchhHHhcCCCCCCCCc--cccceecCCC
Confidence 6667887776 7999999999999999 4999998776
No 51
>1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B
Probab=90.33 E-value=1.3 Score=45.66 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=57.4
Q ss_pred CCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEe-----Ce----eeecccceeecccEEEEEeCCCCCCCCc
Q psy15505 915 NPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVA-----GI----TCQPYESLYNRTTQIVCQVDGPGTRGSR 985 (2400)
Q Consensus 915 ~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vg-----g~----~C~v~~~~y~~st~IvC~tpps~~~~~~ 985 (2400)
.+.|..++=.+||..||..|-|.|.||.. .|+ .|.+- |. ...+.+...---..|+|+|||... ...
T Consensus 3 ~l~I~r~s~~s~~v~GG~Ev~Llc~kv~K--~di--kV~F~E~~~~g~~WE~~~~f~~~dvh~Q~aIvf~tPpY~~-~~I 77 (106)
T 1u36_A 3 NLKIVRMDRTAGCVTGGEEIWLLCDKVQK--DDI--QIRFYEEEENGGVWEGFGDFSPTDVHRQFAICFKTPKYKD-VNI 77 (106)
T ss_dssp CCCEEEESCSEEETTCCCEEEEEESCCCT--TSC--EEEEEECC----CEEEECBCCGGGEETTTEEEEECCCCSC-TTC
T ss_pred CCEEEEeeCCccccCCCCEEEEEeccccC--CCC--EEEEEEeCCCCCceEEeeecCHHHcccceEEEEECCCCCC-Ccc
Confidence 47899999999999999999999999953 355 55552 10 011111122123579999999752 445
Q ss_pred cccEEEEEc-----ccccccccceEEe
Q psy15505 986 EGPVIVKIE-----DFRGQSKDNYQFV 1007 (2400)
Q Consensus 986 ~G~V~V~V~-----~~~~~S~~~FtY~ 1007 (2400)
..+|+|.+. +.....+..|+|.
T Consensus 78 ~~pV~V~~~l~r~sd~~~Sep~~FtY~ 104 (106)
T 1u36_A 78 TKPASVFVQLRRKSDLETSEPKPFLYY 104 (106)
T ss_dssp SSCEEEEEEEECTTTCCBCCCEEEEEE
T ss_pred CCCEEEEEEEEcCCCCCccCCcCcEEc
Confidence 567777664 2234556888885
No 52
>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.62 E-value=1.9 Score=45.07 Aligned_cols=88 Identities=11% Similarity=0.092 Sum_probs=55.4
Q ss_pred ceeeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEe--CCccceeEE---------ecCceEEEEcCCCCC---ccce
Q psy15505 11 GTLRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFI--DDLPCRITS---------VEPEMAHCVTSASDR---QRNG 76 (2400)
Q Consensus 11 ~~~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtV--G~~pC~I~~---------v~~t~I~C~Tpps~~---~g~~ 76 (2400)
..|.|..++-+.||..||-.|-|.|.++..++.| ++. +..--.+.+ .....|.|+|||... ...+
T Consensus 7 ~~P~I~k~s~~s~~v~GG~Ev~Ll~~k~~kd~kV-~F~E~~~dG~~~WE~~a~f~~d~~~q~aivf~tPpY~~~~I~~pV 85 (114)
T 2yrp_A 7 GLPQVEAYSPSACSVRGGEELVLTGSNFLPDSKV-VFIERGPDGKLQWEEEATVNRLQSNEVTLTLTVPEYSNKRVSRPV 85 (114)
T ss_dssp SCCEEEEEESSCEETTCCSEEEEEEESCCTTCEE-EEECBCTTSCBCCCCBCCBCTTTCBTTEEEEECCCCSCCSCSSCE
T ss_pred CCCEEEEecCcccccCCCCEEEEEecccCCCCEE-EEEEECCCCCcceEEeeEEChHHcccccEEEecCCCCCCccCCCe
Confidence 4578899999999999999999999999865433 233 110011111 113469999999863 2344
Q ss_pred eEEEEEC-CCeeeecCcceEEeeC
Q psy15505 77 KLSMKFD-KGTRFFDGSLYEYVED 99 (2400)
Q Consensus 77 ~V~V~~d-g~~~~~~~~~F~Y~en 99 (2400)
.|.++.- |....+....|+|.+.
T Consensus 86 ~V~~~l~~~~rk~Se~~~FtY~P~ 109 (114)
T 2yrp_A 86 QVYFYVSNGRRKRSPTQSFRFLPV 109 (114)
T ss_dssp EEEEEEECSSSCBCCCEEEEEECC
T ss_pred EEEEEECCCCCcccCCcCcEEech
Confidence 5555552 2122344557998863
No 53
>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1
Probab=88.87 E-value=1.8 Score=45.60 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=57.8
Q ss_pred CCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEe-----Ce----eeecccceeecccEEEEEeCCCCCCCCc
Q psy15505 915 NPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVA-----GI----TCQPYESLYNRTTQIVCQVDGPGTRGSR 985 (2400)
Q Consensus 915 ~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vg-----g~----~C~v~~~~y~~st~IvC~tpps~~~~~~ 985 (2400)
.+.|..++=.+||..||..|-|.|.||.. .|+ .|.+- |. ...+.+...---..|+|+|||... ...
T Consensus 3 ~l~I~r~s~~s~~v~GG~Ev~Llc~kv~K--~di--kV~F~e~~~~g~~WE~~~~f~~~dvh~Q~aIvf~tPpY~~-~~I 77 (119)
T 1ikn_C 3 NLKIVRMDRTAGCVTGGEEIYLLCDKVQK--DDI--QIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKD-VNI 77 (119)
T ss_dssp CCCEEEESCSEEETTCCCEEEEEESCCCT--TSE--EEEEEEECTTSCEEEEECCCCGGGEETTTEEEEECCCCSC-TTC
T ss_pred CCEEEEeeCCccccCCCCEEEEEeccccC--CCC--EEEEEEeCCCCCceEEeEEeChhhccccceEEEECCCCCC-CCc
Confidence 47899999999999999999999999953 355 45542 11 111112222223579999999752 345
Q ss_pred cccEEEEEc-----ccccccccceEEe
Q psy15505 986 EGPVIVKIE-----DFRGQSKDNYQFV 1007 (2400)
Q Consensus 986 ~G~V~V~V~-----~~~~~S~~~FtY~ 1007 (2400)
..+|.|.+. +.....+..|+|.
T Consensus 78 ~~pV~V~i~L~r~sd~~~Sep~~FtY~ 104 (119)
T 1ikn_C 78 TKPASVFVQLRRKSDLETSEPKPFLYY 104 (119)
T ss_dssp SSCEEEEEEEEETTTCCBCCCEEEEEE
T ss_pred CCCEEEEEEEEcCCCCCccCCcccEee
Confidence 567777664 2234556889886
No 54
>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1
Probab=88.71 E-value=2.2 Score=44.90 Aligned_cols=86 Identities=9% Similarity=0.078 Sum_probs=54.8
Q ss_pred ceeeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEe-----CCccceeEEe----------cCceEEEEcCCCCCc--
Q psy15505 11 GTLRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFI-----DDLPCRITSV----------EPEMAHCVTSASDRQ-- 73 (2400)
Q Consensus 11 ~~~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtV-----G~~pC~I~~v----------~~t~I~C~Tpps~~~-- 73 (2400)
..+.|..++=..||..||..|-|.|.++.-. +++|.+ ++ .+.+. ....|.|+|||....
T Consensus 2 s~l~I~r~s~~s~~v~GG~Ev~Llc~kv~K~-dikV~F~e~~~~g---~~WE~~~~f~~~dvh~Q~aIvf~tPpY~~~~I 77 (119)
T 1ikn_C 2 SNLKIVRMDRTAGCVTGGEEIYLLCDKVQKD-DIQIRFYEEEENG---GVWEGFGDFSPTDVHRQFAIVFKTPKYKDVNI 77 (119)
T ss_dssp CCCCEEEESCSEEETTCCCEEEEEESCCCTT-SEEEEEEEECTTS---CEEEEECCCCGGGEETTTEEEEECCCCSCTTC
T ss_pred CCCEEEEeeCCccccCCCCEEEEEeccccCC-CCEEEEEEeCCCC---CceEEeEEeChhhccccceEEEECCCCCCCCc
Confidence 3578899999999999999999999999742 333433 22 22211 124699999998643
Q ss_pred -cceeEEEEEC--CCeeeecCcceEEeeCC
Q psy15505 74 -RNGKLSMKFD--KGTRFFDGSLYEYVEDP 100 (2400)
Q Consensus 74 -g~~~V~V~~d--g~~~~~~~~~F~Y~enP 100 (2400)
..+.|.++.- +....+....|+|.+.|
T Consensus 78 ~~pV~V~i~L~r~sd~~~Sep~~FtY~P~~ 107 (119)
T 1ikn_C 78 TKPASVFVQLRRKSDLETSEPKPFLYYPEI 107 (119)
T ss_dssp SSCEEEEEEEEETTTCCBCCCEEEEEECCS
T ss_pred CCCEEEEEEEEcCCCCCccCCcccEeecCc
Confidence 3344444432 22223345579999865
No 55
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=87.98 E-value=0.048 Score=70.20 Aligned_cols=31 Identities=48% Similarity=0.644 Sum_probs=29.8
Q ss_pred cchhhhhhhhcccccccccccccccccCccc
Q psy15505 349 STENTRVLKNMQEQMDILELRVAAECKAPIY 379 (2400)
Q Consensus 349 s~eaer~~~k~~~Qme~lE~sV~dEC~~~~~ 379 (2400)
|++|+|+|++++.|||+||++|++|||++|+
T Consensus 2 s~~a~r~~kk~~~Qme~LE~~Vr~ecK~aFa 32 (627)
T 3ig3_A 2 TQDADRTLKRLQLQMDNLESRVALECKEAFA 32 (627)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999997
No 56
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*
Probab=87.53 E-value=2.2 Score=52.61 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=53.0
Q ss_pred CcEEEEEecCceecCCCcEEEEEeecCCCCCcEEEEECCceeEEEEecCceEEEEcCCCC----------CCceeEeEee
Q psy15505 1008 DPVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASD----------RQRNGKLSES 1077 (2400)
Q Consensus 1008 ~P~ItsIsP~~GP~sGGT~VTItGs~L~~gs~v~V~IG~~~C~i~s~s~t~I~C~Tp~~~----------~~~~v~V~~~ 1077 (2400)
-|+|.++.-.-|-- -.+|.|+|+||.. +++|.||+.+..-..++++.+.|..|+.. .+..+||.+
T Consensus 328 vP~v~~l~l~g~g~--~amlEl~G~nF~~--~L~VWFG~v~aeT~yR~~e~l~c~vP~~~~~~~~w~~~~~~~~Vpi~L- 402 (422)
T 3iag_C 328 VPVVESLQLNGGGD--VAMLELTGQNFTP--NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTL- 402 (422)
T ss_dssp CCEEEEEEECCCSS--SCEEEEEEESCCT--TEEEEETTEECCEEEEETTEEEEECCCGGGTSTTCSSCCSCEEEEEEE-
T ss_pred CCeEEEEEecCCCc--eeEEEEEccCCCC--CceEEECCCCceeEEeccceEEEeCCCHHHhccCccccCCceEEEEEE-
Confidence 36677775331110 1689999999964 69999999998888899999999999843 234666662
Q ss_pred eeEEEECCceeee
Q psy15505 1078 NTQHSFTELVQTL 1090 (2400)
Q Consensus 1078 ~v~V~~d~~~~~~ 1090 (2400)
|.-||.-...
T Consensus 403 ---VR~DGviy~t 412 (422)
T 3iag_C 403 ---VRNDGVIYST 412 (422)
T ss_dssp ---EETTSEEEEE
T ss_pred ---EecCCEEeeC
Confidence 5566655443
No 57
>1my7_A NF-kappab P65 (RELA) subunit; immunoglobulin, IG, beta-sandwich, beta-sheet, homodimerdna- binding, transcription regulation, activator; 1.49A {Mus musculus} SCOP: b.1.18.1 PDB: 1my5_A 1bft_A
Probab=86.23 E-value=3.2 Score=43.37 Aligned_cols=88 Identities=15% Similarity=0.214 Sum_probs=54.2
Q ss_pred eeeEEEEecCCccCCCCcEEEEEEecCCCC-CcEEEEeCC-ccce--eE--Ee-cCceEEEEcCCCCCc---cceeEEEE
Q psy15505 12 TLRNQCVRQTKGPRSGGTILHISGSHMNAG-SRIEAFIDD-LPCR--IT--SV-EPEMAHCVTSASDRQ---RNGKLSMK 81 (2400)
Q Consensus 12 ~~~ItsIsPt~GP~aGGT~LTItG~~L~tG-S~v~VtVG~-~pC~--I~--~v-~~t~I~C~Tpps~~~---g~~~V~V~ 81 (2400)
.+.|.-++=..||..||..|-+.|.++... ..| ++.-. -... +. .+ ....|.|+|||.... ..+.|.++
T Consensus 3 ~L~I~r~s~~sg~v~GG~Ev~LLc~kv~K~Di~V-rF~e~~WE~~g~f~~~Dvh~Q~aIvfktPpY~~~~I~~pV~V~i~ 81 (114)
T 1my7_A 3 ELKICRVNRRSGSCLGGDEIFLLCDKVQKEDIEV-YFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQ 81 (114)
T ss_dssp SCCEEEESCSEEETTCCCEEEEEESCCCTTSCEE-EEEETTEEEECBCCGGGBCTTSEEEEECCCCSCTTCCSCEEEEEE
T ss_pred ccEEEEecCCceecCCCcEEEEEecccccCCCEE-EEEccCeEEecccChhhcccceeEEEECCCCCCCccCCCEEEEEE
Confidence 577899999999999999999999999774 333 23321 1110 00 01 123699999998633 23444333
Q ss_pred EC--CCeeeecCcceEEeeCC
Q psy15505 82 FD--KGTRFFDGSLYEYVEDP 100 (2400)
Q Consensus 82 ~d--g~~~~~~~~~F~Y~enP 100 (2400)
.- +....+....|+|.+.|
T Consensus 82 L~r~sd~~~Sep~~FtY~P~~ 102 (114)
T 1my7_A 82 LRRPSDRELSEPMEFQYLPDT 102 (114)
T ss_dssp EEETTTTEECCCEEEEEECCC
T ss_pred EEeCCCCCcCCCcccEEecCc
Confidence 31 22223445579998754
No 58
>1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B
Probab=85.53 E-value=3.5 Score=42.63 Aligned_cols=85 Identities=9% Similarity=0.104 Sum_probs=52.6
Q ss_pred ceeeEEEEecCCccCCCCcEEEEEEecCCC-CCcEEEEe---CCccceeEEe----------cCceEEEEcCCCCCc---
Q psy15505 11 GTLRNQCVRQTKGPRSGGTILHISGSHMNA-GSRIEAFI---DDLPCRITSV----------EPEMAHCVTSASDRQ--- 73 (2400)
Q Consensus 11 ~~~~ItsIsPt~GP~aGGT~LTItG~~L~t-GS~v~VtV---G~~pC~I~~v----------~~t~I~C~Tpps~~~--- 73 (2400)
..+.|..++=..||..||..|-+.|.++.. ...|...= ++ .+.+. ....|.|+|||....
T Consensus 2 s~l~I~r~s~~s~~v~GG~Ev~Llc~kv~K~dikV~F~E~~~~g---~~WE~~~~f~~~dvh~Q~aIvf~tPpY~~~~I~ 78 (106)
T 1u36_A 2 SNLKIVRMDRTAGCVTGGEEIWLLCDKVQKDDIQIRFYEEEENG---GVWEGFGDFSPTDVHRQFAICFKTPKYKDVNIT 78 (106)
T ss_dssp -CCCEEEESCSEEETTCCCEEEEEESCCCTTSCEEEEEECC-------CEEEECBCCGGGEETTTEEEEECCCCSCTTCS
T ss_pred CCCEEEEeeCCccccCCCCEEEEEeccccCCCCEEEEEEeCCCC---CceEEeeecCHHHcccceEEEEECCCCCCCccC
Confidence 357889999999999999999999999975 44432221 12 12211 124699999998643
Q ss_pred cceeEEEEECC--CeeeecCcceEEee
Q psy15505 74 RNGKLSMKFDK--GTRFFDGSLYEYVE 98 (2400)
Q Consensus 74 g~~~V~V~~dg--~~~~~~~~~F~Y~e 98 (2400)
..+.|.++.-. ....+....|+|.+
T Consensus 79 ~pV~V~~~l~r~sd~~~Sep~~FtY~P 105 (106)
T 1u36_A 79 KPASVFVQLRRKSDLETSEPKPFLYYP 105 (106)
T ss_dssp SCEEEEEEEECTTTCCBCCCEEEEEEC
T ss_pred CCEEEEEEEEcCCCCCccCCcCcEEcC
Confidence 33444444421 22223455799975
No 59
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*
Probab=85.42 E-value=3.2 Score=51.34 Aligned_cols=88 Identities=11% Similarity=0.231 Sum_probs=63.2
Q ss_pred CCceeeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEeCCccceeEEecCceEEEEcCCCC----------CccceeE
Q psy15505 9 GDGTLRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASD----------RQRNGKL 78 (2400)
Q Consensus 9 ~~~~~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtVG~~pC~I~~v~~t~I~C~Tpps~----------~~g~~~V 78 (2400)
.-|.|.|..+.-. |.- --..|.|+|+||.. +.+|-+|++|=.-..++++.+.|..|+.+ .+..+||
T Consensus 325 vtPvP~v~~l~l~-g~g-~~amlEl~G~nF~~--~L~VWFG~v~aeT~yR~~e~l~c~vP~~~~~~~~w~~~~~~~~Vpi 400 (422)
T 3iag_C 325 VTPVPVVESLQLN-GGG-DVAMLELTGQNFTP--NLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPV 400 (422)
T ss_dssp CCSCCEEEEEEEC-CCS-SSCEEEEEEESCCT--TEEEEETTEECCEEEEETTEEEEECCCGGGTSTTCSSCCSCEEEEE
T ss_pred CCCCCeEEEEEec-CCC-ceeEEEEEccCCCC--CceEEECCCCceeEEeccceEEEeCCCHHHhccCccccCCceEEEE
Confidence 4466788877632 211 12689999999965 59999999987777889999999998843 2356777
Q ss_pred EEEECCCeeeecCcceEEeeCC
Q psy15505 79 SMKFDKGTRFFDGSLYEYVEDP 100 (2400)
Q Consensus 79 ~V~~dg~~~~~~~~~F~Y~enP 100 (2400)
.+.=+.+-....+.+|+|++.|
T Consensus 401 ~LVR~DGviy~t~~tfty~pe~ 422 (422)
T 3iag_C 401 TLVRNDGVIYSTSLTFTYTPEP 422 (422)
T ss_dssp EEEETTSEEEEEEEEEEECCCC
T ss_pred EEEecCCEEeeCCccEEecCCC
Confidence 6655555565667788888765
No 60
>1my7_A NF-kappab P65 (RELA) subunit; immunoglobulin, IG, beta-sandwich, beta-sheet, homodimerdna- binding, transcription regulation, activator; 1.49A {Mus musculus} SCOP: b.1.18.1 PDB: 1my5_A 1bft_A
Probab=85.23 E-value=3.6 Score=42.99 Aligned_cols=87 Identities=22% Similarity=0.261 Sum_probs=56.2
Q ss_pred CeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCe--ee--ecccceeecccEEEEEeCCCCCCCCccccEEE
Q psy15505 916 PEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGI--TC--QPYESLYNRTTQIVCQVDGPGTRGSREGPVIV 991 (2400)
Q Consensus 916 P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~--~C--~v~~~~y~~st~IvC~tpps~~~~~~~G~V~V 991 (2400)
..|..++=.+||..||..|-+.|.+|.. +|+ .|.+-.. .. .+.+..+---..|+|.|||... .....+|+|
T Consensus 4 L~I~r~s~~sg~v~GG~Ev~LLc~kv~K--~Di--~VrF~e~~WE~~g~f~~~Dvh~Q~aIvfktPpY~~-~~I~~pV~V 78 (114)
T 1my7_A 4 LKICRVNRRSGSCLGGDEIFLLCDKVQK--EDI--EVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYAD-PSLQAPVRV 78 (114)
T ss_dssp CCEEEESCSEEETTCCCEEEEEESCCCT--TSC--EEEEEETTEEEECBCCGGGBCTTSEEEEECCCCSC-TTCCSCEEE
T ss_pred cEEEEecCCceecCCCcEEEEEeccccc--CCC--EEEEEccCeEEecccChhhcccceeEEEECCCCCC-CccCCCEEE
Confidence 5688889999999999999999999954 355 4544221 11 1111122223579999999752 455567777
Q ss_pred EEc-----ccccccccceEEe
Q psy15505 992 KIE-----DFRGQSKDNYQFV 1007 (2400)
Q Consensus 992 ~V~-----~~~~~S~~~FtY~ 1007 (2400)
.+. +.....+..|+|.
T Consensus 79 ~i~L~r~sd~~~Sep~~FtY~ 99 (114)
T 1my7_A 79 SMQLRRPSDRELSEPMEFQYL 99 (114)
T ss_dssp EEEEEETTTTEECCCEEEEEE
T ss_pred EEEEEeCCCCCcCCCcccEEe
Confidence 664 2223446788886
No 61
>3brd_A LIN-12 and GLP-1 phenotype protein 1, isoform A; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans} SCOP: b.1.18.1 b.2.5.8 b.42.7.1 PDB: 2fo1_A 1ttu_A* 3brf_A*
Probab=81.67 E-value=1.4 Score=55.21 Aligned_cols=88 Identities=14% Similarity=0.222 Sum_probs=62.6
Q ss_pred CCCCceeeEEEEecCCccCCCC--cEEEEEEecCCCCCcEEEEeCCccceeEEecCceEEEEcCCCCC------------
Q psy15505 7 GAGDGTLRNQCVRQTKGPRSGG--TILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDR------------ 72 (2400)
Q Consensus 7 ~~~~~~~~ItsIsPt~GP~aGG--T~LTItG~~L~tGS~v~VtVG~~pC~I~~v~~t~I~C~Tpps~~------------ 72 (2400)
...-|.|.|..+.-.. || -.|.|+|.||.+ +.+|-+|++||.-..+.++.+.|.+|+.+.
T Consensus 371 ~PVTPvP~V~~~~~~g----~g~~~mlel~G~nF~~--~l~VWfG~~~aeT~~r~~e~l~c~vP~~s~~~~~~~~w~~~~ 444 (477)
T 3brd_A 371 NPISPCPVVGSLEVDG----HGEASRVELHGRDFKP--NLKVWFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTN 444 (477)
T ss_dssp SCSCSCCEEEEEEEEC----SGGGCEEEEEEECCCT--TEEEEETTEEECEEEEETTEEEEECCCHHHHSCTTTHHHHBC
T ss_pred CCCCCCCeeeEEeecC----CCceeEEEEEcccCCC--CCeEEECCccceeeEEccceeeccCCCHHHhCcccccccccc
Confidence 3445666666654321 33 789999999964 489999999999888888899999987431
Q ss_pred ----ccceeEEEEECCCeeeecCcceEEeeCC
Q psy15505 73 ----QRNGKLSMKFDKGTRFFDGSLYEYVEDP 100 (2400)
Q Consensus 73 ----~g~~~V~V~~dg~~~~~~~~~F~Y~enP 100 (2400)
+-.+||.+.-+.+-....+.+|+|++.|
T Consensus 445 ~~~~~~~vPl~LVr~dGviy~t~~tf~y~p~~ 476 (477)
T 3brd_A 445 RTTGDVEVPISLVRDDGVVYSSGLTFSYKSLE 476 (477)
T ss_dssp TTTCCBEEEEEEEETTSEEEEEEEEEETTCC-
T ss_pred ccCCceEeeEEEEecCCEEEecCceEEeccCC
Confidence 3347886666666666667778887654
No 62
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=81.59 E-value=0.21 Score=64.39 Aligned_cols=127 Identities=14% Similarity=0.243 Sum_probs=91.0
Q ss_pred hhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCCCCchhhcccccCCCcceeeeecccCCCe--eeeeccCC
Q psy15505 2010 LQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLIKNPNF--VFDIHKSN 2087 (2400)
Q Consensus 2010 lq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i~d~~~~h~WKtN~lpLRFWvn~ikNp~f--vfDi~~s~ 2087 (2400)
|..+++.++++|.+..+ .+|..+||+|--+=+.+.+.+ .|+....==++.+-|||..-.|-||+- +.|.+-++
T Consensus 292 L~~~~~~~~~~I~~s~~---~~P~~lr~i~~~l~~~~~~~~--~p~~~~~~v~~fiflRfi~PAIvsP~~fgl~~~~p~~ 366 (483)
T 3bxj_A 292 LRMCCELALCKVVNSHC---VFPRELKEVFASWRLRCAERG--REDIADRLISASLFLRFLCPAIMSPSLFGLMQEYPDE 366 (483)
T ss_dssp HHHHHHHHHHHHHGGGG---GSCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTTTHHHHHHCGGGGTSCSSCCCH
T ss_pred HHHHHHHHHHHHHHhHH---hCcHHHHHHHHHHHHHHhhcc--CCchHHHHHHHHHHHHHHhHHhCChHhhCCcCCCCCH
Confidence 56777888888888764 799999999987766655443 566655555788999999999999985 22333345
Q ss_pred CCCcceeeehhhhccccccCCcccCCC---CCCccccccccchhHHHHHHHHHHHhhcCCCCC
Q psy15505 2088 IVDSCLSVVAQTFMDSCSTSDHRLGKD---SPSSKLLYAKDIPAYKEWVERYYSDIKSMQAIS 2147 (2400)
Q Consensus 2088 ~vd~~lsviaqtfmdacs~se~~lgkd---spsnklLyakdip~yk~~v~~yy~~I~~~p~~s 2147 (2400)
.+-..|..||+++....+..+-- +|+ .|.|.. |-..++.+.+|+.+|.+.|...
T Consensus 367 ~~~r~L~liaKvLQ~lan~~~f~-~ke~~m~~lN~f-----i~~~~~~~~~fl~~i~~v~~~~ 423 (483)
T 3bxj_A 367 QTSRTLTLIAKVIQNLANFSKFT-SKEDFLGFMNEF-----LELEWGSMQQFLYEISNLDTLT 423 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCC-STTTTSGGGHHH-----HHHHHHHHHHHHHHTSCCCCSS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCC-CccHHHHhHHHH-----HHHHHHHHHHHHHHhCCCCCcc
Confidence 56788999999988776654321 233 233432 4567888999999999877654
No 63
>2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens}
Probab=80.64 E-value=4.7 Score=52.05 Aligned_cols=88 Identities=22% Similarity=0.244 Sum_probs=58.3
Q ss_pred CCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCe----eeecccceeecccEEEEEeCCCCCCCCccccEE
Q psy15505 915 NPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGI----TCQPYESLYNRTTQIVCQVDGPGTRGSREGPVI 990 (2400)
Q Consensus 915 ~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~----~C~v~~~~y~~st~IvC~tpps~~~~~~~G~V~ 990 (2400)
...|..++-.+||..||..|-|.|.+|.. +|+ .|.+-.. ...+.+..+---..|+|.|||... .....+|+
T Consensus 176 eL~I~r~s~~sgsv~GG~Ev~LLc~kv~K--~Di--kVrF~e~~WE~~a~f~~~Dvh~Q~AIvfkTPpY~~-~~I~~pV~ 250 (540)
T 2o61_A 176 ELKICRVNRNSGSCLGGDEIFLLCDKVQK--EDI--EVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYAD-PSLQAPVR 250 (540)
T ss_dssp CCCEEEESCSEEETTCCCEEEEEESSCBT--TBC--EEEEEETTEEEECBCCGGGEETTTEEEEECCCCSS-SCCSSCEE
T ss_pred CCeEEEecCCccccCCCCeEEEEeccccc--CCc--EEEEecccceeccccChhhhcceeeEEEeCCCCCC-CCCCCCeE
Confidence 35699999999999999999999999843 356 5554221 011111122223569999999752 45556777
Q ss_pred EEEc-----ccccccccceEEe
Q psy15505 991 VKIE-----DFRGQSKDNYQFV 1007 (2400)
Q Consensus 991 V~V~-----~~~~~S~~~FtY~ 1007 (2400)
|.+. +.....+..|+|.
T Consensus 251 V~iqL~r~sd~~~Sep~~FtY~ 272 (540)
T 2o61_A 251 VSMQLRRPSDRELSEPMEFQYL 272 (540)
T ss_dssp EEEEEECGGGCCBCCCEEEEEE
T ss_pred EEEEEEeCCCCCcCCCcCcEEe
Confidence 7765 2234557899997
No 64
>2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens}
Probab=80.36 E-value=2.9 Score=53.89 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=55.4
Q ss_pred CceeeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEeCCccceeE-Ee------cCceEEEEcCCCCCc---cceeEE
Q psy15505 10 DGTLRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRIT-SV------EPEMAHCVTSASDRQ---RNGKLS 79 (2400)
Q Consensus 10 ~~~~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtVG~~pC~I~-~v------~~t~I~C~Tpps~~~---g~~~V~ 79 (2400)
-+.+.|..++-+.||..||..|-|.|.++.......++.-.. =.-. .+ ....|+|+|||.... ..+.|.
T Consensus 174 ~~eL~I~r~s~~sgsv~GG~Ev~LLc~kv~K~DikVrF~e~~-WE~~a~f~~~Dvh~Q~AIvfkTPpY~~~~I~~pV~V~ 252 (540)
T 2o61_A 174 TAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPG-WEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVS 252 (540)
T ss_dssp SSCCCEEEESCSEEETTCCCEEEEEESSCBTTBCEEEEEETT-EEEECBCCGGGEETTTEEEEECCCCSSSCCSSCEEEE
T ss_pred CCCCeEEEecCCccccCCCCeEEEEecccccCCcEEEEeccc-ceeccccChhhhcceeeEEEeCCCCCCCCCCCCeEEE
Confidence 357789999999999999999999999997743222233210 0000 11 123599999998632 233443
Q ss_pred EEECC--CeeeecCcceEEeeCCceeee
Q psy15505 80 MKFDK--GTRFFDGSLYEYVEDPTIDSV 105 (2400)
Q Consensus 80 V~~dg--~~~~~~~~~F~Y~enP~ItsI 105 (2400)
|+.-. ....+....|+|.+.+.+...
T Consensus 253 iqL~r~sd~~~Sep~~FtY~P~~~~~~~ 280 (540)
T 2o61_A 253 MQLRRPSDRELSEPMEFQYLPDGSLSSG 280 (540)
T ss_dssp EEEECGGGCCBCCCEEEEEECC------
T ss_pred EEEEeCCCCCcCCCcCcEEecCCCCccc
Confidence 33331 122234557999998777654
No 65
>1nf1_A NF1-333, protein (neurofibromin); type I neurofibromatosis, RAS, GAP, signal transduction, cancer, growth regulation, GTP hydrolysis; 2.50A {Homo sapiens} SCOP: a.116.1.2
Probab=79.55 E-value=0.21 Score=61.40 Aligned_cols=179 Identities=17% Similarity=0.194 Sum_probs=100.1
Q ss_pred hhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCCCCchhhcccccCCCcceeeeecccCCCee--eeeccCC
Q psy15505 2010 LQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLIKNPNFV--FDIHKSN 2087 (2400)
Q Consensus 2010 lq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i~d~~~~h~WKtN~lpLRFWvn~ikNp~fv--fDi~~s~ 2087 (2400)
|..+++.++++|.+..+ .+|..+||+|-.+=+.+.++- |+.-+.==++.+-|||..-.|-||+-. .|.+.++
T Consensus 142 L~~~~~~~~~~I~~s~~---~~P~~lR~i~~~l~~~~~~kf---p~~~~~~v~~fiflRfi~PAIvsP~~fgl~~~~~~~ 215 (333)
T 1nf1_A 142 LLQMTEKFFHAIISSSS---EFPPQLRSVCHCLYQVVSQRF---PQNSIGAVGSAMFLRFINPAIVSPYEAGILDKKPPP 215 (333)
T ss_dssp TTTTHHHHHHHHHHTTT---TCCTTHHHHHHHHHHHHTTTC---CSSCHHHHHHHHHHHTHHHHHHCTTCC--------C
T ss_pred HHHHHHHHHHHHHHhHH---hCCHHHHHHHHHHHHHHHHHC---CCchHHHHHHHHHHHHHhhhhCCHHHhCCcCCCCCH
Confidence 55677888888887764 799999999999988877753 222122235788999999999999862 2333455
Q ss_pred CCCcceeeehhhhccccccCCcccCCCC---CCccccccccchhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhhcc
Q psy15505 2088 IVDSCLSVVAQTFMDSCSTSDHRLGKDS---PSSKLLYAKDIPAYKEWVERYYSDIKSMQAISDQDMNAMLAEESRLHNS 2164 (2400)
Q Consensus 2088 ~vd~~lsviaqtfmdacs~se~~lgkds---psnklLyakdip~yk~~v~~yy~~I~~~p~~s~qem~~~l~~~s~~~~~ 2164 (2400)
.+-..|..||+++...-+.. ..||+. |.|. =|-..++.+.+|+.+|...++-+| .++. +..+
T Consensus 216 ~~~r~L~liaKvLQ~lan~~--~f~ke~~m~~lN~-----fi~~~~~~~~~f~~~i~~~~~~~d-~~~~-----~~~~-- 280 (333)
T 1nf1_A 216 IIERGLKLMSKILQSIANHV--LFTKEEHMRPFND-----FVKSNFDAARRFFLDIASDCPTSD-AVNH-----SLSF-- 280 (333)
T ss_dssp HHHHHHHTHHHHHHHHHHTC--CCCSSTTSGGGHH-----HHHHTHHHHHHHHHHTTC----------------------
T ss_pred HHHHhHHHHHHHHHHHHccC--CCCchHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCccc-cccc-----cccc--
Confidence 67788999999887665543 235542 3333 233467778899999887655432 1221 1111
Q ss_pred cccHHHHHHHHHHHHHhhHHHHHHHhhcChhhHh---hhHHHHHHHHHHhc
Q psy15505 2165 EFSTNCALYELYTYASKYNEQLTVTLEEDEFSQK---QRLAYKLEQKSNAG 2212 (2400)
Q Consensus 2165 ~f~~~~al~ely~y~~~y~~~i~~~L~~d~~~~~---~~l~~~l~~v~~~~ 2212 (2400)
-+..-+..|.+++.++.+.|-..|..... ++ .+.-++|.++.+.+
T Consensus 281 --i~~~ei~~lH~ll~~~~~~i~~~l~s~~~-~~~~~~~~~d~l~~lL~~l 328 (333)
T 1nf1_A 281 --ISDGNVLALHRLLWNNQEKIGQYLSSNRD-HKAVGRRPFDKMATLLAYL 328 (333)
T ss_dssp ---------CC-CHHHHHTTHHHHSTTC----------CHHHHHHHHHHTC
T ss_pred --cCHHHHHHHHHHHHHHHHHHHHHHhcccc-cccccCCcchHHHHHHHHh
Confidence 11222223345667788888876665332 22 22334555554444
No 66
>1zk9_A Transcription factor RELB; NF-KB, transcription factors, intertwined dimer; 2.18A {Mus musculus} PDB: 1zka_A 3jv6_A 3jv4_A 3jss_A 3juz_A 3jv0_A
Probab=79.34 E-value=1.3 Score=45.89 Aligned_cols=87 Identities=13% Similarity=0.160 Sum_probs=55.8
Q ss_pred CCceeeEEEEecCCccCCCCcEEEEEEecCCCC-CcEEEEe-------CC-ccceeEEecCceEEEEcCCCCCc-cceeE
Q psy15505 9 GDGTLRNQCVRQTKGPRSGGTILHISGSHMNAG-SRIEAFI-------DD-LPCRITSVEPEMAHCVTSASDRQ-RNGKL 78 (2400)
Q Consensus 9 ~~~~~~ItsIsPt~GP~aGGT~LTItG~~L~tG-S~v~VtV-------G~-~pC~I~~v~~t~I~C~Tpps~~~-g~~~V 78 (2400)
....+.|.-++=..||..||..|-|.|.++... ..| ++. |+ .+..+. ....|.|+|||.... -..+|
T Consensus 9 ~~~~L~I~r~s~~sg~v~GG~Ev~LLc~kv~K~Di~V-~F~e~~WE~~~~f~~~Dvh--~Q~aIvf~tPpY~~~~I~~pV 85 (110)
T 1zk9_A 9 NTSELRICRINKESGPCTGGEELYLLCDKVQKEDISV-VFSTASWEGRADFSQADVH--RQIAIVFKTPPYEDLEISEPV 85 (110)
T ss_dssp ECTTSCEEEESCSCCCTTCCCCCCEEESCCCTTSCCC-EEEETTEEEECCCCGGGCC--CCCCCCCCCCCCSCTTCSSCE
T ss_pred CCCCCEEEEecCCccccCCCCEEEEEecccccCCcEE-EEechheeeccccCccccc--ccceEEEECCCCCCcccCCCe
Confidence 345688999999999999999999999999884 333 222 22 122221 124599999998643 23455
Q ss_pred EEEEC----CCeeeecCcceEEee
Q psy15505 79 SMKFD----KGTRFFDGSLYEYVE 98 (2400)
Q Consensus 79 ~V~~d----g~~~~~~~~~F~Y~e 98 (2400)
.|.+- +....+....|+|.+
T Consensus 86 ~V~i~L~r~sd~~~Sep~~FtY~P 109 (110)
T 1zk9_A 86 TVNVFLQRLTDGVCSEPLPFTYLP 109 (110)
T ss_dssp EEEECCBCTTTCCBCCCEEEEECC
T ss_pred EEEEEEEeCCCCCccCCcCcEEcC
Confidence 55554 122223445688875
No 67
>1zk9_A Transcription factor RELB; NF-KB, transcription factors, intertwined dimer; 2.18A {Mus musculus} PDB: 1zka_A 3jv6_A 3jv4_A 3jss_A 3juz_A 3jv0_A
Probab=79.17 E-value=2 Score=44.60 Aligned_cols=88 Identities=19% Similarity=0.197 Sum_probs=57.0
Q ss_pred CCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCe--ee--ecccceeecccEEEEEeCCCCCCCCccccEE
Q psy15505 915 NPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGI--TC--QPYESLYNRTTQIVCQVDGPGTRGSREGPVI 990 (2400)
Q Consensus 915 ~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~--~C--~v~~~~y~~st~IvC~tpps~~~~~~~G~V~ 990 (2400)
.+.|..++=.+||..||..|-|.|.||.. +|+ .|.+-.. .. ...+...--...|+|+|||... .....+|+
T Consensus 12 ~L~I~r~s~~sg~v~GG~Ev~LLc~kv~K--~Di--~V~F~e~~WE~~~~f~~~Dvh~Q~aIvf~tPpY~~-~~I~~pV~ 86 (110)
T 1zk9_A 12 ELRICRINKESGPCTGGEELYLLCDKVQK--EDI--SVVFSTASWEGRADFSQADVHRQIAIVFKTPPYED-LEISEPVT 86 (110)
T ss_dssp TSCEEEESCSCCCTTCCCCCCEEESCCCT--TSC--CCEEEETTEEEECCCCGGGCCCCCCCCCCCCCCSC-TTCSSCEE
T ss_pred CCEEEEecCCccccCCCCEEEEEeccccc--CCc--EEEEechheeeccccCcccccccceEEEECCCCCC-cccCCCeE
Confidence 48899999999999999999999999954 355 3443211 00 0011111122569999998752 45667888
Q ss_pred EEEc-----ccccccccceEEe
Q psy15505 991 VKIE-----DFRGQSKDNYQFV 1007 (2400)
Q Consensus 991 V~V~-----~~~~~S~~~FtY~ 1007 (2400)
|.+. +.....+..|+|.
T Consensus 87 V~i~L~r~sd~~~Sep~~FtY~ 108 (110)
T 1zk9_A 87 VNVFLQRLTDGVCSEPLPFTYL 108 (110)
T ss_dssp EEECCBCTTTCCBCCCEEEEEC
T ss_pred EEEEEEeCCCCCccCCcCcEEc
Confidence 8876 2223446788884
No 68
>1oy3_C Transcription factor P65; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: b.1.18.1 PDB: 1k3z_A
Probab=76.19 E-value=8.7 Score=41.20 Aligned_cols=88 Identities=17% Similarity=0.246 Sum_probs=54.3
Q ss_pred eeeEEEEecCCccCCCCcEEEEEEecCCCCCcEEE-EeCC-ccce--eE--Ee-cCceEEEEcCCCCCc---cceeEEEE
Q psy15505 12 TLRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEA-FIDD-LPCR--IT--SV-EPEMAHCVTSASDRQ---RNGKLSMK 81 (2400)
Q Consensus 12 ~~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~V-tVG~-~pC~--I~--~v-~~t~I~C~Tpps~~~---g~~~V~V~ 81 (2400)
.+.|..++=..||..||..|-|-|..+... +++| +... -... +. .+ ....|+|+|||.... ..+.|.++
T Consensus 3 ~L~I~r~s~~sg~v~GG~Ev~LLceKv~K~-Di~VrF~e~~WE~~g~f~~~dVh~Q~AIvfkTPpY~~~~I~~pV~V~iq 81 (136)
T 1oy3_C 3 ELKICRVNRNSGSCLGGDEIFLLCDKVQKE-DIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQ 81 (136)
T ss_dssp CCCEEEESCSEEETTCCCEEEEEESCCCTT-SCEEEEEETTEEEECBCCGGGBCTTSEEEEECCCCSCTTCCSCEEEEEE
T ss_pred ccEEEEecCCccccCCCcEEEEEccccccC-CCEEEEEccCeEEecccChhheecceEEEEECCCCCCccCCCCeEEEEE
Confidence 578899999999999999999999999763 2333 2221 1111 00 01 123699999998643 23444434
Q ss_pred EC--CCeeeecCcceEEeeCC
Q psy15505 82 FD--KGTRFFDGSLYEYVEDP 100 (2400)
Q Consensus 82 ~d--g~~~~~~~~~F~Y~enP 100 (2400)
.- +....+....|+|.++.
T Consensus 82 L~rpsd~~~Sep~~F~Y~P~~ 102 (136)
T 1oy3_C 82 LRRPSDRELSEPMEFQYLPDT 102 (136)
T ss_dssp EEETTTTEECCCEEEEEECCC
T ss_pred EEeCCCCCccCCcceEEecCc
Confidence 31 22233455579998863
No 69
>1imh_C NF-AT5, tonebp, nuclear factor of activated T cells 5; beta barrel, protein-DNA complex, double helix, DNA encirclement, transcription/DNA complex; 2.86A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3
Probab=75.94 E-value=9.9 Score=45.49 Aligned_cols=86 Identities=20% Similarity=0.176 Sum_probs=57.3
Q ss_pred CCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCe---------eeecccceeecccEEEEEeCCCCCCCCc
Q psy15505 915 NPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGI---------TCQPYESLYNRTTQIVCQVDGPGTRGSR 985 (2400)
Q Consensus 915 ~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~---------~C~v~~~~y~~st~IvC~tpps~~~~~~ 985 (2400)
.|.|..++-.+||..||..|-|.|.+|-. |+ .|.+-.. ...+.++... -..|+|+|||... ...
T Consensus 181 ~l~I~r~s~~sg~v~GG~Ev~Llc~kv~K---di--kVrF~E~~~d~~~WE~~~~f~~~dvh-Q~aIvf~tPpY~~-~~I 253 (281)
T 1imh_C 181 VPEILKKSLHSCSVKGEEEVFLIGKNFLK---GT--KVIFQENVSDENSWKSEAEIDMELFH-QNHLIVKVPPYHD-QHI 253 (281)
T ss_dssp CCEEEEESCCEEETTCCCEEEEEEECCCT---TC--EEEEESSSCTTCSCEEEECBCGGGCC-SSEEEEECCCCSC-TTC
T ss_pred CCeEEEEecCccccCCCcEEEEEeeccCC---Cc--EEEEEEeCCCCCceEEeEEeChhhcc-cceEEEECCCCcc-Ccc
Confidence 59999999999999999999999999954 44 4555221 0111111111 3579999999752 445
Q ss_pred cccEEEEEc----ccccccccceEEe
Q psy15505 986 EGPVIVKIE----DFRGQSKDNYQFV 1007 (2400)
Q Consensus 986 ~G~V~V~V~----~~~~~S~~~FtY~ 1007 (2400)
..+|+|.+. +.....+..|+|.
T Consensus 254 ~~pV~V~iqL~rsd~~~S~p~~FtY~ 279 (281)
T 1imh_C 254 TLPVSVGIYVVTNAGRSHDVQPFTYT 279 (281)
T ss_dssp SSCEEEEEEEEETTEECCSCEEEEEE
T ss_pred CCCeEEEEEEEeCCCCccCCcCceec
Confidence 567777665 2223446889885
No 70
>1ikn_A P65, protein (NF-kappa-B P65 subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 1nfi_A 2ram_A* 1ram_A* 2i9t_A 1lei_A* 1le9_A 1le5_A* 1vkx_A* 3gut_A
Probab=75.29 E-value=9.6 Score=45.71 Aligned_cols=88 Identities=22% Similarity=0.244 Sum_probs=57.6
Q ss_pred CCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCe----eeecccceeecccEEEEEeCCCCCCCCccccEE
Q psy15505 915 NPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGI----TCQPYESLYNRTTQIVCQVDGPGTRGSREGPVI 990 (2400)
Q Consensus 915 ~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~----~C~v~~~~y~~st~IvC~tpps~~~~~~~G~V~ 990 (2400)
.+.|..++-.+||..||..|-|.|.+|.. +|+ .|.+-.. ...+.+...---..|+|.|||... .....+|+
T Consensus 175 eL~I~r~s~~sg~v~GG~Ev~Llc~kv~K--~di--~V~F~e~~WE~~~~f~~~dvh~Q~aIvf~tPpY~~-~~I~~pV~ 249 (286)
T 1ikn_A 175 ELKICRVNRNSGSCLGGDEIFLLCDKVQK--EDI--EVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYAD-PSLQAPVR 249 (286)
T ss_dssp CCCEEEESCSEEETTCCCEEEEEESCCCT--TSC--EEEEEETTEEEECBCCGGGBCTTSEEEEECCCCSC-TTCSSCEE
T ss_pred CCeEEEecCCccccCCCCEEEEEeccccc--CCC--EEEEeccceEEeeecCHHHhccceeEEEECCCCCC-CCcCCCEE
Confidence 46799999999999999999999999843 355 4544221 011111111123569999999752 45556777
Q ss_pred EEEc-----ccccccccceEEe
Q psy15505 991 VKIE-----DFRGQSKDNYQFV 1007 (2400)
Q Consensus 991 V~V~-----~~~~~S~~~FtY~ 1007 (2400)
|.+. +.....+..|+|.
T Consensus 250 V~i~L~r~sd~~~Sep~~FtY~ 271 (286)
T 1ikn_A 250 VSMQLRRPSDRELSEPMEFQYL 271 (286)
T ss_dssp EEEEEECTTTCCBCCCEEEEEE
T ss_pred EEEEEEeCCCCCcCCCcCcEEe
Confidence 7665 2234556889886
No 71
>1oy3_C Transcription factor P65; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: b.1.18.1 PDB: 1k3z_A
Probab=75.28 E-value=13 Score=40.00 Aligned_cols=87 Identities=22% Similarity=0.258 Sum_probs=56.3
Q ss_pred CeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCe--eee--cccceeecccEEEEEeCCCCCCCCccccEEE
Q psy15505 916 PEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGI--TCQ--PYESLYNRTTQIVCQVDGPGTRGSREGPVIV 991 (2400)
Q Consensus 916 P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~--~C~--v~~~~y~~st~IvC~tpps~~~~~~~G~V~V 991 (2400)
..|..++=.+||..||..|-|-|.++.. +|+ .|.+-.. .+. +.+..+---..|+|+|||... .....+|+|
T Consensus 4 L~I~r~s~~sg~v~GG~Ev~LLceKv~K--~Di--~VrF~e~~WE~~g~f~~~dVh~Q~AIvfkTPpY~~-~~I~~pV~V 78 (136)
T 1oy3_C 4 LKICRVNRNSGSCLGGDEIFLLCDKVQK--EDI--EVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYAD-PSLQAPVRV 78 (136)
T ss_dssp CCEEEESCSEEETTCCCEEEEEESCCCT--TSC--EEEEEETTEEEECBCCGGGBCTTSEEEEECCCCSC-TTCCSCEEE
T ss_pred cEEEEecCCccccCCCcEEEEEcccccc--CCC--EEEEEccCeEEecccChhheecceEEEEECCCCCC-ccCCCCeEE
Confidence 5688889999999999999999999853 466 5554221 111 111122223579999999752 345567777
Q ss_pred EEc-----ccccccccceEEe
Q psy15505 992 KIE-----DFRGQSKDNYQFV 1007 (2400)
Q Consensus 992 ~V~-----~~~~~S~~~FtY~ 1007 (2400)
.+. +.....+..|+|.
T Consensus 79 ~iqL~rpsd~~~Sep~~F~Y~ 99 (136)
T 1oy3_C 79 SMQLRRPSDRELSEPMEFQYL 99 (136)
T ss_dssp EEEEEETTTTEECCCEEEEEE
T ss_pred EEEEEeCCCCCccCCcceEEe
Confidence 664 2224456788886
No 72
>1ikn_A P65, protein (NF-kappa-B P65 subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 1nfi_A 2ram_A* 1ram_A* 2i9t_A 1lei_A* 1le9_A 1le5_A* 1vkx_A* 3gut_A
Probab=74.21 E-value=11 Score=45.37 Aligned_cols=89 Identities=15% Similarity=0.216 Sum_probs=54.8
Q ss_pred ceeeEEEEecCCccCCCCcEEEEEEecCCCC-CcEEEEeCC-ccce--eE--Ee-cCceEEEEcCCCCCc---cceeEEE
Q psy15505 11 GTLRNQCVRQTKGPRSGGTILHISGSHMNAG-SRIEAFIDD-LPCR--IT--SV-EPEMAHCVTSASDRQ---RNGKLSM 80 (2400)
Q Consensus 11 ~~~~ItsIsPt~GP~aGGT~LTItG~~L~tG-S~v~VtVG~-~pC~--I~--~v-~~t~I~C~Tpps~~~---g~~~V~V 80 (2400)
+.+.|..++-+.||..||..|-|.|.++... ..| ++.-. ..-. +. .+ ....|+|+|||.... ..+.|.+
T Consensus 174 ~eL~I~r~s~~sg~v~GG~Ev~Llc~kv~K~di~V-~F~e~~WE~~~~f~~~dvh~Q~aIvf~tPpY~~~~I~~pV~V~i 252 (286)
T 1ikn_A 174 AELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEV-YFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSM 252 (286)
T ss_dssp CCCCEEEESCSEEETTCCCEEEEEESCCCTTSCEE-EEEETTEEEECBCCGGGBCTTSEEEEECCCCSCTTCSSCEEEEE
T ss_pred CCCeEEEecCCccccCCCCEEEEEecccccCCCEE-EEeccceEEeeecCHHHhccceeEEEECCCCCCCCcCCCEEEEE
Confidence 5678999999999999999999999999753 333 23221 1000 00 01 123599999998632 3344444
Q ss_pred EEC--CCeeeecCcceEEeeCC
Q psy15505 81 KFD--KGTRFFDGSLYEYVEDP 100 (2400)
Q Consensus 81 ~~d--g~~~~~~~~~F~Y~enP 100 (2400)
+.- +....+....|+|.+.+
T Consensus 253 ~L~r~sd~~~Sep~~FtY~P~~ 274 (286)
T 1ikn_A 253 QLRRPSDRELSEPMEFQYLPDT 274 (286)
T ss_dssp EEECTTTCCBCCCEEEEEECCT
T ss_pred EEEeCCCCCcCCCcCcEEecCc
Confidence 442 12222345579998864
No 73
>1nfk_A Protein (nuclear factor kappa-B (NF-KB)); NF-KB P50, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 2v2t_B 1ooa_A 1lei_B* 1le9_B 1le5_B* 2i9t_B 1vkx_B* 3gut_B 2o61_B
Probab=74.04 E-value=14 Score=45.06 Aligned_cols=88 Identities=9% Similarity=0.079 Sum_probs=55.2
Q ss_pred ceeeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEe---CCccceeEE----ec------CceEEEEcCCCCCc---c
Q psy15505 11 GTLRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFI---DDLPCRITS----VE------PEMAHCVTSASDRQ---R 74 (2400)
Q Consensus 11 ~~~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtV---G~~pC~I~~----v~------~t~I~C~Tpps~~~---g 74 (2400)
+.+.|..++-+.||..||..|-|.|.++.-. +++|.+ ++.-- +.+ ++ ...|+|+|||.... .
T Consensus 208 ~eL~I~r~s~~sg~v~GG~Ev~LLc~kv~K~-Di~VrF~E~~~~g~-~WE~~g~f~~~Dvh~Q~AIvfkTPpY~~~~I~~ 285 (325)
T 1nfk_A 208 SNLKIVRMDRTAGCVTGGEEIYLLCDKVQKD-DIQIRFYEEEENGG-VWEGFGDFSPTDVHRQFAIVFKTPKYKDVNITK 285 (325)
T ss_dssp CCCCEEEESCSCEESSCCCEEEEEESCCCTT-TEEEEEEECCCSSC-CEEEECBCCGGGBCTTSEEEEECCCTTSSCCCS
T ss_pred CCCeEEEecCCccccCCCCEEEEEecccccC-CCEEEEEEeCCCCC-eeEEeeeeCHHHccceeEEEEECCCCCCCCcCC
Confidence 5788999999999999999999999999653 344533 11111 221 11 23599999998642 3
Q ss_pred ceeEEEEEC--CCeeeecCcceEEeeCC
Q psy15505 75 NGKLSMKFD--KGTRFFDGSLYEYVEDP 100 (2400)
Q Consensus 75 ~~~V~V~~d--g~~~~~~~~~F~Y~enP 100 (2400)
.+.|.|+.- +....+....|+|.+.+
T Consensus 286 pV~V~iqL~r~sd~~~Sep~~FtY~P~~ 313 (325)
T 1nfk_A 286 PASVFVQLRRKSDLETSEPKPFLYYPEI 313 (325)
T ss_dssp SEEEEEEEEETTTCCBCCCEEEEEECC-
T ss_pred CeEEEEEEEcCCCCCccCCccceeecCc
Confidence 344444442 21223345568988754
No 74
>1gji_A C-REL protein, C-REL proto-oncogene protein; NF-KB/DNA complex, transcription factor, C-REL homodimer, transcription/DNA complex; 2.85A {Gallus gallus} SCOP: b.1.18.1 b.2.5.3
Probab=73.43 E-value=7.3 Score=46.49 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=54.2
Q ss_pred ceeeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEe-CC-------c-cceeEEecCceEEEEcCCCCCccceeEEEE
Q psy15505 11 GTLRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFI-DD-------L-PCRITSVEPEMAHCVTSASDRQRNGKLSMK 81 (2400)
Q Consensus 11 ~~~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtV-G~-------~-pC~I~~v~~t~I~C~Tpps~~~g~~~V~V~ 81 (2400)
+.+.|.-++=+.||..||..|-|-|.+++-. +++|.+ -+ . +-.+. ....|.|+|||....-..+|+|.
T Consensus 177 ~eL~I~r~s~~sg~v~GG~Ev~LLc~kv~K~-di~VrF~e~~We~~~~f~~~Dvh--~Q~AIvf~TPpY~~~I~~pV~V~ 253 (275)
T 1gji_A 177 AELRICRVNKNCGSVKGGDEIFILCDKVQKD-DIEVRFVLDNWEAKGSFSQADVH--RQVAIVFRTPPFLRDITEPITVK 253 (275)
T ss_dssp SCCCEEEESCSEEETTCCCEEEEEESCCCGG-GCEEEEEETTEEEECBCCGGGEE--TTTEEEEECCCCSSCCSSCEEEE
T ss_pred CCCEEEEeeCCccccCCCCEEEEEecccccC-CCEEEEEccceeeccccChhhhc--ceeeEEEeCCCCCcCCCCCEEEE
Confidence 5788999999999999999999999999663 233322 21 1 11110 12359999999875333444443
Q ss_pred EC----CCeeeecCcceEEeeC
Q psy15505 82 FD----KGTRFFDGSLYEYVED 99 (2400)
Q Consensus 82 ~d----g~~~~~~~~~F~Y~en 99 (2400)
+- +....+....|+|.++
T Consensus 254 iqL~r~sd~~~Sep~~FtY~P~ 275 (275)
T 1gji_A 254 MQLRRPSDQEVSEPMDFRYLPD 275 (275)
T ss_dssp EEEEEGGGTEECCCEEEEEECC
T ss_pred EEEEcCCCCCccCCcCcEEcCC
Confidence 32 1122334557999864
No 75
>3brd_A LIN-12 and GLP-1 phenotype protein 1, isoform A; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans} SCOP: b.1.18.1 b.2.5.8 b.42.7.1 PDB: 2fo1_A 1ttu_A* 3brf_A*
Probab=72.78 E-value=6.6 Score=49.42 Aligned_cols=52 Identities=19% Similarity=0.389 Sum_probs=41.6
Q ss_pred cEEEEEecCceecCCC--cEEEEEeecCCCCCcEEEEECCceeEEEEecCceEEEEcCCC
Q psy15505 1009 PVIKSIQPLQGPRSGG--TILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSAS 1066 (2400)
Q Consensus 1009 P~ItsIsP~~GP~sGG--T~VTItGs~L~~gs~v~V~IG~~~C~i~s~s~t~I~C~Tp~~ 1066 (2400)
|+|..+.-.. || .+|.|+|.||. .+++|.||+.+|.-....++.+.|..|+.
T Consensus 377 P~V~~~~~~g----~g~~~mlel~G~nF~--~~l~VWfG~~~aeT~~r~~e~l~c~vP~~ 430 (477)
T 3brd_A 377 PVVGSLEVDG----HGEASRVELHGRDFK--PNLKVWFGATPVETTFRSEESLHCSIPPV 430 (477)
T ss_dssp CEEEEEEEEC----SGGGCEEEEEEECCC--TTEEEEETTEEECEEEEETTEEEEECCCH
T ss_pred CeeeEEeecC----CCceeEEEEEcccCC--CCCeEEECCccceeeEEccceeeccCCCH
Confidence 5566654332 23 79999999996 45899999999999888999999999885
No 76
>1a3q_A Protein (nuclear factor kappa-B P52); transcription factor, immune response, DNA-protein complex, transcription/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 3do7_B 3jv6_B 3jv5_A
Probab=72.22 E-value=13 Score=44.55 Aligned_cols=88 Identities=18% Similarity=0.160 Sum_probs=57.8
Q ss_pred CCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCe-----e--eecccceeecccEEEEEeCCCCCCCCccc
Q psy15505 915 NPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGI-----T--CQPYESLYNRTTQIVCQVDGPGTRGSREG 987 (2400)
Q Consensus 915 ~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~-----~--C~v~~~~y~~st~IvC~tpps~~~~~~~G 987 (2400)
.+.|..++-.+||..||..|-|.|.+|.. +|+ .|.+-.. . ..+.+...---..|+|.|||... .....
T Consensus 185 eL~I~r~s~~sg~v~GG~Ev~Llc~kv~K--~Di--~V~F~E~~~~gWE~~~~f~~~dvh~Q~aIvf~tPpY~~-~~I~~ 259 (285)
T 1a3q_A 185 NLKISRMDKTAGSVRGGDEVYLLCDKVQK--DDI--EVRFYEDDENGWQAFGDFSPTDVHKQYAIVFRTPPYHK-MKIER 259 (285)
T ss_dssp CCCEEEESCSEEETTCCCEEEEEESSCCT--TTE--EEEEEECSSSCEEEECBCCGGGEETTTEEEEECCCCSC-TTCSS
T ss_pred CCeEEEecCCccccCCCCEEEEEeccccC--CCC--EEEEEecCCCCCEEeeEeCHHHccceeeEEEECCCCCC-CCCCC
Confidence 47799999999999999999999999954 345 5554221 0 11111111123569999999752 45556
Q ss_pred cEEEEEc-----ccccccccceEEe
Q psy15505 988 PVIVKIE-----DFRGQSKDNYQFV 1007 (2400)
Q Consensus 988 ~V~V~V~-----~~~~~S~~~FtY~ 1007 (2400)
+|.|.+. +.....+..|+|.
T Consensus 260 pV~V~iqL~r~sd~~~Sep~~FtY~ 284 (285)
T 1a3q_A 260 PVTVFLQLKRKRGGDVSDSKQFTYY 284 (285)
T ss_dssp CEEEEEEEEETTTCCBCCCEEEEEE
T ss_pred CeEEEEEEEeCCCCCccCCCCceeC
Confidence 7777765 2334556889885
No 77
>1imh_C NF-AT5, tonebp, nuclear factor of activated T cells 5; beta barrel, protein-DNA complex, double helix, DNA encirclement, transcription/DNA complex; 2.86A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3
Probab=71.38 E-value=6 Score=47.30 Aligned_cols=87 Identities=10% Similarity=0.074 Sum_probs=55.1
Q ss_pred ceeeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEe-CCccc-eeE----E-----ecCceEEEEcCCCCCc---cce
Q psy15505 11 GTLRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFI-DDLPC-RIT----S-----VEPEMAHCVTSASDRQ---RNG 76 (2400)
Q Consensus 11 ~~~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtV-G~~pC-~I~----~-----v~~t~I~C~Tpps~~~---g~~ 76 (2400)
..+.|..++-+.||..||..|-|.|.++... ++|.+ -..+= .+. . +....|.|+|||.... ..+
T Consensus 180 ~~l~I~r~s~~sg~v~GG~Ev~Llc~kv~Kd--ikVrF~E~~~d~~~WE~~~~f~~~dvhQ~aIvf~tPpY~~~~I~~pV 257 (281)
T 1imh_C 180 GVPEILKKSLHSCSVKGEEEVFLIGKNFLKG--TKVIFQENVSDENSWKSEAEIDMELFHQNHLIVKVPPYHDQHITLPV 257 (281)
T ss_dssp CCCEEEEESCCEEETTCCCEEEEEEECCCTT--CEEEEESSSCTTCSCEEEECBCGGGCCSSEEEEECCCCSCTTCSSCE
T ss_pred CCCeEEEEecCccccCCCcEEEEEeeccCCC--cEEEEEEeCCCCCceEEeEEeChhhcccceEEEECCCCccCccCCCe
Confidence 5588999999999999999999999999885 44443 11000 111 1 1134699999998632 334
Q ss_pred eEEEEEC-CCeeeecCcceEEeeC
Q psy15505 77 KLSMKFD-KGTRFFDGSLYEYVED 99 (2400)
Q Consensus 77 ~V~V~~d-g~~~~~~~~~F~Y~en 99 (2400)
.|.++.- +....+....|+|.++
T Consensus 258 ~V~iqL~rsd~~~S~p~~FtY~P~ 281 (281)
T 1imh_C 258 SVGIYVVTNAGRSHDVQPFTYTPD 281 (281)
T ss_dssp EEEEEEEETTEECCSCEEEEEECC
T ss_pred EEEEEEEeCCCCccCCcCceecCC
Confidence 4444432 2223334457999863
No 78
>1gji_A C-REL protein, C-REL proto-oncogene protein; NF-KB/DNA complex, transcription factor, C-REL homodimer, transcription/DNA complex; 2.85A {Gallus gallus} SCOP: b.1.18.1 b.2.5.3
Probab=70.00 E-value=12 Score=44.56 Aligned_cols=87 Identities=18% Similarity=0.193 Sum_probs=58.0
Q ss_pred CCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCe----eeecccceeecccEEEEEeCCCCCCCCccccEE
Q psy15505 915 NPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGI----TCQPYESLYNRTTQIVCQVDGPGTRGSREGPVI 990 (2400)
Q Consensus 915 ~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~----~C~v~~~~y~~st~IvC~tpps~~~~~~~G~V~ 990 (2400)
.+.|..++=.+||..||..|-|.|.+|.. +|+ .|.+-.. ...+.+...---..|+|.|||.. .....+|+
T Consensus 178 eL~I~r~s~~sg~v~GG~Ev~LLc~kv~K--~di--~VrF~e~~We~~~~f~~~Dvh~Q~AIvf~TPpY~--~~I~~pV~ 251 (275)
T 1gji_A 178 ELRICRVNKNCGSVKGGDEIFILCDKVQK--DDI--EVRFVLDNWEAKGSFSQADVHRQVAIVFRTPPFL--RDITEPIT 251 (275)
T ss_dssp CCCEEEESCSEEETTCCCEEEEEESCCCG--GGC--EEEEEETTEEEECBCCGGGEETTTEEEEECCCCS--SCCSSCEE
T ss_pred CCEEEEeeCCccccCCCCEEEEEeccccc--CCC--EEEEEccceeeccccChhhhcceeeEEEeCCCCC--cCCCCCEE
Confidence 47799999999999999999999999953 355 4544221 00111111112246999999986 36677888
Q ss_pred EEEc-----ccccccccceEEe
Q psy15505 991 VKIE-----DFRGQSKDNYQFV 1007 (2400)
Q Consensus 991 V~V~-----~~~~~S~~~FtY~ 1007 (2400)
|.+. +.....+..|+|.
T Consensus 252 V~iqL~r~sd~~~Sep~~FtY~ 273 (275)
T 1gji_A 252 VKMQLRRPSDQEVSEPMDFRYL 273 (275)
T ss_dssp EEEEEEEGGGTEECCCEEEEEE
T ss_pred EEEEEEcCCCCCccCCcCcEEc
Confidence 7775 2234456788885
No 79
>1p7h_L Nuclear factor of activated T-cells, cytoplasmic 2; DNA binding protein, transcription regulation, activator, transcription/DNA complex; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 2o93_L 1a02_N* 1pzu_B 1owr_M 2as5_N 1s9k_C 3qrf_N 1nfa_A 1a66_A*
Probab=69.91 E-value=14 Score=44.43 Aligned_cols=86 Identities=13% Similarity=0.151 Sum_probs=57.4
Q ss_pred CCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCee----------eecccceeecccEEEEEeCCCCCCCC
Q psy15505 915 NPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGIT----------CQPYESLYNRTTQIVCQVDGPGTRGS 984 (2400)
Q Consensus 915 ~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~~----------C~v~~~~y~~st~IvC~tpps~~~~~ 984 (2400)
.|.|..++-.+||..||..|-|.|.+|- .|+ .|.|-... ..+.. ...-...|+|+|||... ..
T Consensus 185 ~l~I~r~s~~sg~v~GG~Ei~Llc~kv~---KDi--kVrF~E~~~dg~~~We~~g~f~~-dvh~Q~AIvfkTPpY~~-~~ 257 (286)
T 1p7h_L 185 LPMVERQDTDSCLVYGGQQMILTGQNFT---SES--KVVFTEKTTDGQQIWEMEATVDK-DKSQPNMLFVEIPEYRN-KH 257 (286)
T ss_dssp CCEEEEESCSEEETTCCCEEEEEEESCC---SSC--EEEEEEECSSSCEEEEEEECBCT-TTCBTTEEEEECCCCSC-TT
T ss_pred CCeEEEeccccccccCCcEEEEEecccC---CCc--EEEEEEECCCCCcceEEeEEeCc-cccccceEEEECCCCcc-Cc
Confidence 4899999999999999999999999993 366 45552110 11111 11123569999998752 45
Q ss_pred ccccEEEEEc---c-cccccccceEEe
Q psy15505 985 REGPVIVKIE---D-FRGQSKDNYQFV 1007 (2400)
Q Consensus 985 ~~G~V~V~V~---~-~~~~S~~~FtY~ 1007 (2400)
...+|.|.+. . .....+..|+|.
T Consensus 258 I~~pV~V~~~l~r~d~~~Sep~~FtY~ 284 (286)
T 1p7h_L 258 IRTPVKVNFYVINGKRKRSQPQHFTYH 284 (286)
T ss_dssp CSSCEEEEEEEEETTTEECCCEEEEEE
T ss_pred cCCCeEEEEEEeCCCCCcCCCcCceEe
Confidence 5667777665 2 234456889885
No 80
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=68.67 E-value=0.54 Score=41.13 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=14.7
Q ss_pred ceEEeehhhHHHHHHHHH-hhheeeeccchHh
Q psy15505 1605 TAMYGGIAIITILFLIFI-AFLIAYRRKSTEN 1635 (2400)
Q Consensus 1605 ~~i~~~~~~~~~l~li~~-~~~~~yrrks~~~ 1635 (2400)
++|++.++++++++++++ ++.++.|||++|.
T Consensus 11 ~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVALGIGLFMRRRHIVR 42 (44)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred ceEEeehhHHHHHHHHHHHHHHHHhhhhHhhc
Confidence 355555555444444333 3344455555543
No 81
>3fay_A P195, RAS GTPase-activating-like protein iqgap1; all alpha, calmodulin-binding, cell membrane, membrane, phosphoprotein, membrane protein; 2.20A {Homo sapiens}
Probab=68.24 E-value=0.31 Score=61.17 Aligned_cols=130 Identities=14% Similarity=0.196 Sum_probs=89.8
Q ss_pred cchhhhhHhHHhhhhccCcCCCCCCcchhhhhhccHHHHHhcCCCC-chhhcccccCCCcceeeeecccCCCeeeeecc-
Q psy15505 2008 GTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITD-PEVVHTWKSNSLPLRFWVNLIKNPNFVFDIHK- 2085 (2400)
Q Consensus 2008 gtlq~fvdd~f~~i~~~~~~~~~~P~aiKy~FDflD~~A~~~~i~d-~~~~h~WKtN~lpLRFWvn~ikNp~fvfDi~~- 2085 (2400)
..|..+++.|+++|.+..+ .+|..|||+|--+=+.+.++--.+ ++.+..==++.+-|||..-.|-||+-.-=+..
T Consensus 178 ~~L~~~~~~~~~~I~~s~~---~~P~~lR~i~~~l~~~~~~kfp~~~~~~~~~~vg~flflRFi~PAIvsP~~fgl~~~~ 254 (387)
T 3fay_A 178 RNMRAVTDKFLSAIVSSVD---KIPYGMRFIAKVLKDSLHEKFPDAGEDELLKIIGNLLYYRYMNPAIVAPDAFDIIDLS 254 (387)
T ss_dssp HHHHHHHHHHHHHHHTTGG---GSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHCCCCCHHHHHSTTTTTSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHhhHHhCChHhcCcccCC
Confidence 5678889999999998875 799999999998877777664322 22223333689999999999999986322222
Q ss_pred -----CCCCCcceeeehhhhccccccCCcccCCC---CCCccccccccchhHHHHHHHHHHHhhcCCCC
Q psy15505 2086 -----SNIVDSCLSVVAQTFMDSCSTSDHRLGKD---SPSSKLLYAKDIPAYKEWVERYYSDIKSMQAI 2146 (2400)
Q Consensus 2086 -----s~~vd~~lsviaqtfmdacs~se~~lgkd---spsnklLyakdip~yk~~v~~yy~~I~~~p~~ 2146 (2400)
++..-..|.-||+++....+...-. +|+ .|.|. =|-..++.+.+|+.+|.+.|..
T Consensus 255 p~~~~~~~~rr~L~liaKvLQ~lan~~~f~-~ke~~m~~lN~-----fi~~~~~~~~~fl~~i~~v~~~ 317 (387)
T 3fay_A 255 AGGQLTTDQRRNLGSIAKMLQHAASNKMFL-GDNAHLSIINE-----YLSQSYQKFRRFFQTACDVPEL 317 (387)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHTTCCCC-SSCGGGHHHHH-----HHHHHHHHHHHHHHHHHCCCCH
T ss_pred cccCCCHHHHhHHHHHHHHHHHHHcCCCCC-CCCchHHHHHH-----HHHHHHHHHHHHHHHHhCCCCH
Confidence 4455679999999998876653211 121 22222 2345677888999998887654
No 82
>1p7h_L Nuclear factor of activated T-cells, cytoplasmic 2; DNA binding protein, transcription regulation, activator, transcription/DNA complex; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 2o93_L 1a02_N* 1pzu_B 1owr_M 2as5_N 1s9k_C 3qrf_N 1nfa_A 1a66_A*
Probab=67.35 E-value=18 Score=43.38 Aligned_cols=86 Identities=10% Similarity=0.100 Sum_probs=54.2
Q ss_pred ceeeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEe---CCccceeEEe---------cCceEEEEcCCCCCc---cc
Q psy15505 11 GTLRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFI---DDLPCRITSV---------EPEMAHCVTSASDRQ---RN 75 (2400)
Q Consensus 11 ~~~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtV---G~~pC~I~~v---------~~t~I~C~Tpps~~~---g~ 75 (2400)
..|.|..++-+.||..||..|-|.|.++.. +++|.+ +..--.+.+. ....|.|+|||.... ..
T Consensus 184 ~~l~I~r~s~~sg~v~GG~Ei~Llc~kv~K--DikVrF~E~~~dg~~~We~~g~f~~dvh~Q~AIvfkTPpY~~~~I~~p 261 (286)
T 1p7h_L 184 ELPMVERQDTDSCLVYGGQQMILTGQNFTS--ESKVVFTEKTTDGQQIWEMEATVDKDKSQPNMLFVEIPEYRNKHIRTP 261 (286)
T ss_dssp CCCEEEEESCSEEETTCCCEEEEEEESCCS--SCEEEEEEECSSSCEEEEEEECBCTTTCBTTEEEEECCCCSCTTCSSC
T ss_pred CCCeEEEeccccccccCCcEEEEEecccCC--CcEEEEEEECCCCCcceEEeEEeCccccccceEEEECCCCccCccCCC
Confidence 447999999999999999999999999975 455544 1111122211 123599999998642 33
Q ss_pred eeEEEEECCC-eeeecCcceEEee
Q psy15505 76 GKLSMKFDKG-TRFFDGSLYEYVE 98 (2400)
Q Consensus 76 ~~V~V~~dg~-~~~~~~~~F~Y~e 98 (2400)
+.|.++.-.. ...+....|+|.+
T Consensus 262 V~V~~~l~r~d~~~Sep~~FtY~P 285 (286)
T 1p7h_L 262 VKVNFYVINGKRKRSQPQHFTYHP 285 (286)
T ss_dssp EEEEEEEEETTTEECCCEEEEEEC
T ss_pred eEEEEEEeCCCCCcCCCcCceEec
Confidence 4444444211 1223445688874
No 83
>1nfk_A Protein (nuclear factor kappa-B (NF-KB)); NF-KB P50, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 2v2t_B 1ooa_A 1lei_B* 1le9_B 1le5_B* 2i9t_B 1vkx_B* 3gut_B 2o61_B
Probab=65.07 E-value=19 Score=43.89 Aligned_cols=88 Identities=16% Similarity=0.153 Sum_probs=57.5
Q ss_pred CCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCe---------eeecccceeecccEEEEEeCCCCCCCCc
Q psy15505 915 NPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGI---------TCQPYESLYNRTTQIVCQVDGPGTRGSR 985 (2400)
Q Consensus 915 ~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~---------~C~v~~~~y~~st~IvC~tpps~~~~~~ 985 (2400)
.+.|..++-.+||..||..|-|.|.+|.. +|+ .|.|-.. ...+.+...---..|+|.|||... ...
T Consensus 209 eL~I~r~s~~sg~v~GG~Ev~LLc~kv~K--~Di--~VrF~E~~~~g~~WE~~g~f~~~Dvh~Q~AIvfkTPpY~~-~~I 283 (325)
T 1nfk_A 209 NLKIVRMDRTAGCVTGGEEIYLLCDKVQK--DDI--QIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKD-VNI 283 (325)
T ss_dssp CCCEEEESCSCEESSCCCEEEEEESCCCT--TTE--EEEEEECCCSSCCEEEECBCCGGGBCTTSEEEEECCCTTS-SCC
T ss_pred CCeEEEecCCccccCCCCEEEEEeccccc--CCC--EEEEEEeCCCCCeeEEeeeeCHHHccceeEEEEECCCCCC-CCc
Confidence 47799999999999999999999999953 355 4554211 001111111112569999999752 345
Q ss_pred cccEEEEEc-----ccccccccceEEe
Q psy15505 986 EGPVIVKIE-----DFRGQSKDNYQFV 1007 (2400)
Q Consensus 986 ~G~V~V~V~-----~~~~~S~~~FtY~ 1007 (2400)
..+|.|.+. +.....+..|+|.
T Consensus 284 ~~pV~V~iqL~r~sd~~~Sep~~FtY~ 310 (325)
T 1nfk_A 284 TKPASVFVQLRRKSDLETSEPKPFLYY 310 (325)
T ss_dssp CSSEEEEEEEEETTTCCBCCCEEEEEE
T ss_pred CCCeEEEEEEEcCCCCCccCCccceee
Confidence 567777665 2334557889987
No 84
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=63.90 E-value=0.85 Score=39.86 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=14.5
Q ss_pred ceEEeehhhHHHHHHHHHhhheeeeccchH
Q psy15505 1605 TAMYGGIAIITILFLIFIAFLIAYRRKSTE 1634 (2400)
Q Consensus 1605 ~~i~~~~~~~~~l~li~~~~~~~yrrks~~ 1634 (2400)
+.|+++++|.++++++.+++.++.|||+.|
T Consensus 12 ~~Ia~~vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 12 TSIISAVVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred cchHHHHHHHHHHHHHHHHHHhheehhhhh
Confidence 346666666443333334444444554444
No 85
>1a3q_A Protein (nuclear factor kappa-B P52); transcription factor, immune response, DNA-protein complex, transcription/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 3do7_B 3jv6_B 3jv5_A
Probab=63.49 E-value=27 Score=41.93 Aligned_cols=87 Identities=15% Similarity=0.191 Sum_probs=53.1
Q ss_pred ceeeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEe-CCccceeE---Eec------CceEEEEcCCCCCc---ccee
Q psy15505 11 GTLRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFI-DDLPCRIT---SVE------PEMAHCVTSASDRQ---RNGK 77 (2400)
Q Consensus 11 ~~~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtV-G~~pC~I~---~v~------~t~I~C~Tpps~~~---g~~~ 77 (2400)
+.+.|..++-+.||..||..|-|.|.++.-. +++|.+ -..+=--. .++ ...|.|+|||.... ..+.
T Consensus 184 ~eL~I~r~s~~sg~v~GG~Ev~Llc~kv~K~-Di~V~F~E~~~~gWE~~~~f~~~dvh~Q~aIvf~tPpY~~~~I~~pV~ 262 (285)
T 1a3q_A 184 SNLKISRMDKTAGSVRGGDEVYLLCDKVQKD-DIEVRFYEDDENGWQAFGDFSPTDVHKQYAIVFRTPPYHKMKIERPVT 262 (285)
T ss_dssp SCCCEEEESCSEEETTCCCEEEEEESSCCTT-TEEEEEEECSSSCEEEECBCCGGGEETTTEEEEECCCCSCTTCSSCEE
T ss_pred CCCeEEEecCCccccCCCCEEEEEeccccCC-CCEEEEEecCCCCCEEeeEeCHHHccceeeEEEECCCCCCCCCCCCeE
Confidence 4678999999999999999999999999764 344433 11000011 111 23499999998632 2334
Q ss_pred EEEEEC--CCeeeecCcceEEee
Q psy15505 78 LSMKFD--KGTRFFDGSLYEYVE 98 (2400)
Q Consensus 78 V~V~~d--g~~~~~~~~~F~Y~e 98 (2400)
|.|+.- +....+....|+|.+
T Consensus 263 V~iqL~r~sd~~~Sep~~FtY~P 285 (285)
T 1a3q_A 263 VFLQLKRKRGGDVSDSKQFTYYP 285 (285)
T ss_dssp EEEEEEETTTCCBCCCEEEEEEC
T ss_pred EEEEEEeCCCCCccCCCCceeCC
Confidence 433332 222223455799863
No 86
>2v2t_A RELB, transcription factor RELB; 4-diphosphocytidyl-2C-methyl-D-erythritol, aquifex aeolicus, nucleotide-binding, isoprene biosynthesis; 3.05A {Mus musculus} PDB: 3do7_A
Probab=63.39 E-value=11 Score=45.11 Aligned_cols=96 Identities=11% Similarity=0.093 Sum_probs=57.1
Q ss_pred cccccCCCC---ceeeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEeCCccceeE-Ee------cCceEEEEcCCCC
Q psy15505 2 SHYISGAGD---GTLRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRIT-SV------EPEMAHCVTSASD 71 (2400)
Q Consensus 2 ~~~~~~~~~---~~~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtVG~~pC~I~-~v------~~t~I~C~Tpps~ 71 (2400)
|+-|-..+. +.+.|..++-+.||..||..|-|.|.++.-. +++|.+-...=.-. .+ ....|.|+|||..
T Consensus 177 S~PI~~~ks~~~~eL~I~r~s~~sgsv~GG~Ev~LLc~kv~K~-dikV~F~e~~WE~~~~f~~~Dvh~Q~aIvf~tPpY~ 255 (288)
T 2v2t_A 177 SEPVYDKKSTNTSELRICRINKESGPCTGGEELYLLCDKVQKE-DISVVFSTASWEGRADFSQADVHRQIAIVFKTPPYE 255 (288)
T ss_dssp CCCEECTTSGGGSCCCBCCCSCSCCCSSCCCEEEEEBSSCCTT-SEEEEEECSSCEEECCCCGGGEETTTEEEEECCCCT
T ss_pred ecccccCCCCCCCCCeEEEeeCCccccCCCCEEEEEecccccC-CCEEEEEecceEEeeEeChhhccceeEEEEECCCCC
Confidence 344444443 5688999999999999999999999999643 34443322110000 11 1235999999986
Q ss_pred Cc---cceeEEEEE--CCCeeeecCcceEEee
Q psy15505 72 RQ---RNGKLSMKF--DKGTRFFDGSLYEYVE 98 (2400)
Q Consensus 72 ~~---g~~~V~V~~--dg~~~~~~~~~F~Y~e 98 (2400)
.. ..+.|.++. .+....+....|+|.+
T Consensus 256 ~~~I~~pV~V~iqL~r~sd~~~Sep~~FtY~P 287 (288)
T 2v2t_A 256 DLEISEPVTVNVFLQRLTDGVCSEPLPFTYLP 287 (288)
T ss_dssp TCCCSSCCBCCEEEEETTTCCBCCCBCCBCCC
T ss_pred CCCcCCCeEEEEEEEeCCCCCcCCCcCcEEcC
Confidence 32 233343333 2222223455688875
No 87
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=62.57 E-value=0.57 Score=40.97 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=15.2
Q ss_pred ceEEeehhhHHHHHHHH-HhhheeeeccchHh
Q psy15505 1605 TAMYGGIAIITILFLIF-IAFLIAYRRKSTEN 1635 (2400)
Q Consensus 1605 ~~i~~~~~~~~~l~li~-~~~~~~yrrks~~~ 1635 (2400)
++|++.++|++++++++ +++.++.|||.+|+
T Consensus 10 ~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred ceEEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 45555555544444433 33344455555554
No 88
>1svc_P Protein (nuclear factor kappa-B (NF-KB)); DNA-binding, transcription regulation, activator, nuclear protein, phosphorylation, repeat, DNA; HET: DNA; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3
Probab=61.60 E-value=21 Score=43.99 Aligned_cols=86 Identities=9% Similarity=0.073 Sum_probs=54.6
Q ss_pred ceeeEEEEecCCccCCCCcEEEEEEecCCCCCcEEEEe-----CCccceeEEe----c------CceEEEEcCCCCCc--
Q psy15505 11 GTLRNQCVRQTKGPRSGGTILHISGSHMNAGSRIEAFI-----DDLPCRITSV----E------PEMAHCVTSASDRQ-- 73 (2400)
Q Consensus 11 ~~~~ItsIsPt~GP~aGGT~LTItG~~L~tGS~v~VtV-----G~~pC~I~~v----~------~t~I~C~Tpps~~~-- 73 (2400)
+.+.|..++-+.||..||..|-|.|.++.-. +++|.+ ++. +.+. + ...|+|+|||....
T Consensus 248 ~eL~I~R~s~~sgsv~GG~Ev~LLc~Kv~K~-DikVrF~E~~~~g~---~WE~~g~f~~~DVH~Q~AIvfkTPpY~~~~I 323 (365)
T 1svc_P 248 SNLKIVRMDRTAGCVTGGEEIYLLCDKVQKD-DIQIRFYEEEENGG---VWEGFGDFSPTDVHRQFAIVFKTPKYKDINI 323 (365)
T ss_dssp CCCCEEEESCSEEETTCCCEEEEEESSCCGG-GCEEEEEEEETTTE---EEEEECBCCGGGEETTTEEEEECCCCSCSCC
T ss_pred CCCeEEEecCCccccCCCCEEEEEecccccC-CCEEEEEEeCCCCC---eeEEeeeeChHHhcceeeEEEECCCCCCCCc
Confidence 5688999999999999999999999999643 334433 221 2211 1 23599999998642
Q ss_pred -cceeEEEEECC--CeeeecCcceEEeeCC
Q psy15505 74 -RNGKLSMKFDK--GTRFFDGSLYEYVEDP 100 (2400)
Q Consensus 74 -g~~~V~V~~dg--~~~~~~~~~F~Y~enP 100 (2400)
..+.|.|+.-. ....+....|+|.+.+
T Consensus 324 ~~pV~V~iqL~R~sd~~~Sep~~FtY~P~~ 353 (365)
T 1svc_P 324 TKPASVFVQLRRKSDLETSEPKPFLYYPEI 353 (365)
T ss_dssp SSCEEEEEEEECTTTCCBCCCEEEEEECC-
T ss_pred CCCeEEEEEEEcCCCCCccCCccceeecCc
Confidence 33444444421 1123344568888753
No 89
>1svc_P Protein (nuclear factor kappa-B (NF-KB)); DNA-binding, transcription regulation, activator, nuclear protein, phosphorylation, repeat, DNA; HET: DNA; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3
Probab=60.67 E-value=26 Score=43.28 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=57.4
Q ss_pred CCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCe---------eeecccceeecccEEEEEeCCCCCCCCc
Q psy15505 915 NPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGI---------TCQPYESLYNRTTQIVCQVDGPGTRGSR 985 (2400)
Q Consensus 915 ~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~---------~C~v~~~~y~~st~IvC~tpps~~~~~~ 985 (2400)
.+.|..++-.+||..||..|-|.|.+|.. +|+ .|.|-.. ...+.+...---..|+|.|||... ...
T Consensus 249 eL~I~R~s~~sgsv~GG~Ev~LLc~Kv~K--~Di--kVrF~E~~~~g~~WE~~g~f~~~DVH~Q~AIvfkTPpY~~-~~I 323 (365)
T 1svc_P 249 NLKIVRMDRTAGCVTGGEEIYLLCDKVQK--DDI--QIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKD-INI 323 (365)
T ss_dssp CCCEEEESCSEEETTCCCEEEEEESSCCG--GGC--EEEEEEEETTTEEEEEECBCCGGGEETTTEEEEECCCCSC-SCC
T ss_pred CCeEEEecCCccccCCCCEEEEEeccccc--CCC--EEEEEEeCCCCCeeEEeeeeChHHhcceeeEEEECCCCCC-CCc
Confidence 36799999999999999999999999853 355 4554211 011111111112469999999752 345
Q ss_pred cccEEEEEc-----ccccccccceEEe
Q psy15505 986 EGPVIVKIE-----DFRGQSKDNYQFV 1007 (2400)
Q Consensus 986 ~G~V~V~V~-----~~~~~S~~~FtY~ 1007 (2400)
..+|.|.+. +.....+..|+|.
T Consensus 324 ~~pV~V~iqL~R~sd~~~Sep~~FtY~ 350 (365)
T 1svc_P 324 TKPASVFVQLRRKSDLETSEPKPFLYY 350 (365)
T ss_dssp SSCEEEEEEEECTTTCCBCCCEEEEEE
T ss_pred CCCeEEEEEEEcCCCCCccCCccceee
Confidence 567777664 2334557889987
No 90
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=57.01 E-value=7.4 Score=50.14 Aligned_cols=109 Identities=19% Similarity=0.432 Sum_probs=71.4
Q ss_pred HHhhccCchhHhHHHHhhccCCCCCcccchhhHHHHHHHHHH--HHHHHHHHHHHHHhcC-CCCCccccccchHHHHHHH
Q psy15505 1720 FGQLIQNKTFLLLFIRTLESNRYFSMRDRVNVASLIMVTLQN--ILKTLLAELIEKCMEG-KSHPKLLLRRTESVAEKML 1796 (2400)
Q Consensus 1720 f~~ll~~k~Fl~~fi~tlE~q~~fs~rdr~~~aSLl~v~l~~--il~~Ll~~li~~~~~~-~~~pkl~lRrtEsvvEkml 1796 (2400)
|.+||.+. ...+...||.. .+.+|+..+|..|+-.++. .+..||.+||++-++. ..++..+||. .|++=||+
T Consensus 169 L~~lL~~~--~~~l~~~l~~~--~~~~~~~~~a~~Lv~if~~~~~~~~ll~~l~~~Ei~~~~~~~~~lfR~-Ns~~tk~~ 243 (483)
T 3bxj_A 169 FAEYVTNH--YRMLCAVLEPA--LNVKGKEEVASALVHILQSTGKAKDFLSDMAMSEVDRFMEREHLIFRE-NTLATKAI 243 (483)
T ss_dssp HHHHHHTT--HHHHHHHHHHH--BCHHHHHHHHHHHHHHHHHTTCSBHHHHHHHHHHHHHCSSSSSTTSCS-SSHHHHHH
T ss_pred HHHHHhhc--hHHHHHHhccc--cChhhHHHHHHHHHHHHHHcChHHHHHHHHHHHHHhhhcCChhhhhcc-CCHHHHHH
Confidence 44455443 23455556532 4667888899998888877 4555566666665543 2256788866 68999999
Q ss_pred HHHHHHHHhHHhhhhcCchhHHHHHHHHccccccCcce
Q psy15505 1797 SSWFTFLLYKFLRECAGEPLYLLFRAMKQQVDKGPVDA 1834 (2400)
Q Consensus 1797 tnW~s~~ly~~l~~~ag~pl~~L~~aik~QvekGPvDa 1834 (2400)
+..|-..=.+||++..|..+=.++.- +.-.|=-|...
T Consensus 244 ~~y~r~~g~~yL~~~L~~~i~~i~~~-~~~~EiDP~ki 280 (483)
T 3bxj_A 244 EEYMRLIGQKYLKDAIGEFIRALYES-EENCEVDPIKC 280 (483)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHS-CCCCCCCTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC-CCCcccChhhc
Confidence 99998776789998888776655542 33444445443
No 91
>2v2t_A RELB, transcription factor RELB; 4-diphosphocytidyl-2C-methyl-D-erythritol, aquifex aeolicus, nucleotide-binding, isoprene biosynthesis; 3.05A {Mus musculus} PDB: 3do7_A
Probab=49.89 E-value=15 Score=44.01 Aligned_cols=88 Identities=19% Similarity=0.212 Sum_probs=54.9
Q ss_pred CCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCee----eecccceeecccEEEEEeCCCCCCCCccccEE
Q psy15505 915 NPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGIT----CQPYESLYNRTTQIVCQVDGPGTRGSREGPVI 990 (2400)
Q Consensus 915 ~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~~----C~v~~~~y~~st~IvC~tpps~~~~~~~G~V~ 990 (2400)
.+.|..++-.+||..||..|-|.|.+|.. +|+ .|.+-... ..+.+...---..|+|.|||... .....+|+
T Consensus 190 eL~I~r~s~~sgsv~GG~Ev~LLc~kv~K--~di--kV~F~e~~WE~~~~f~~~Dvh~Q~aIvf~tPpY~~-~~I~~pV~ 264 (288)
T 2v2t_A 190 ELRICRINKESGPCTGGEELYLLCDKVQK--EDI--SVVFSTASWEGRADFSQADVHRQIAIVFKTPPYED-LEISEPVT 264 (288)
T ss_dssp CCCBCCCSCSCCCSSCCCEEEEEBSSCCT--TSE--EEEEECSSCEEECCCCGGGEETTTEEEEECCCCTT-CCCSSCCB
T ss_pred CCeEEEeeCCccccCCCCEEEEEeccccc--CCC--EEEEEecceEEeeEeChhhccceeEEEEECCCCCC-CCcCCCeE
Confidence 36788889999999999999999999843 355 56553310 01111111112469999998752 33445555
Q ss_pred EEEc-----ccccccccceEEe
Q psy15505 991 VKIE-----DFRGQSKDNYQFV 1007 (2400)
Q Consensus 991 V~V~-----~~~~~S~~~FtY~ 1007 (2400)
|.+. +.....+..|+|.
T Consensus 265 V~iqL~r~sd~~~Sep~~FtY~ 286 (288)
T 2v2t_A 265 VNVFLQRLTDGVCSEPLPFTYL 286 (288)
T ss_dssp CCEEEEETTTCCBCCCBCCBCC
T ss_pred EEEEEEeCCCCCcCCCcCcEEc
Confidence 5443 2334556788884
No 92
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=49.86 E-value=81 Score=42.25 Aligned_cols=66 Identities=30% Similarity=0.390 Sum_probs=45.3
Q ss_pred CCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCeeeecccceeecccEEEEEeCCCCCCCCccccEEEEEc
Q psy15505 915 NPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVCQVDGPGTRGSREGPVIVKIE 994 (2400)
Q Consensus 915 ~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~~C~v~~~~y~~st~IvC~tpps~~~~~~~G~V~V~V~ 994 (2400)
.|.|..+.|..|.. |.+++|+|.+||... ..|.|++. |..+ ...+.++|.-.+|... .|...|.|.
T Consensus 498 ~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~-~~~~--~~~~~~~~~~~~p~~~-----~g~~~~~v~ 563 (686)
T 1qho_A 498 APQIGSVAPNMGIP--GNVVTIDGKGFGTTQ----GTVTFGGV-TATV--KSWTSNRIEVYVPNMA-----AGLTDVKVT 563 (686)
T ss_dssp SCEEEEEESSEECT--TCEEEEEEECCCSSC----CEEEETTE-ECCE--EEECSSEEEEECCSCC-----CEEEEEEEE
T ss_pred CCccccccccccCC--CCEEEEEeecCCCcc----eEEEEecc-eeeE--EEcCCCcEEEecCCCC-----CCceEEEEe
Confidence 48899999887644 456999999998743 36999995 6544 3445678887776432 355555554
No 93
>1nf1_A NF1-333, protein (neurofibromin); type I neurofibromatosis, RAS, GAP, signal transduction, cancer, growth regulation, GTP hydrolysis; 2.50A {Homo sapiens} SCOP: a.116.1.2
Probab=47.24 E-value=13 Score=45.71 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=55.7
Q ss_pred CcccchhhHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhHHhhhhcCchhHHH
Q psy15505 1744 SMRDRVNVASLIMVTLQN--ILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWFTFLLYKFLRECAGEPLYLL 1819 (2400)
Q Consensus 1744 s~rdr~~~aSLl~v~l~~--il~~Ll~~li~~~~~~~~~pkl~lRrtEsvvEkmltnW~s~~ly~~l~~~ag~pl~~L 1819 (2400)
..+|+..+|..|.-.+.. .+..||..++++-++.-.+|..+||+. |++-||++..|-.-=.+||++..|..+-.+
T Consensus 35 ~~~~~~~l~~~l~~lf~~~~~l~~ll~~l~~~Ei~~~~~~~~lfR~N-s~~tkll~~y~k~~g~~yL~~~L~p~i~~i 111 (333)
T 1nf1_A 35 PCSQWDELARVLVTLFDSRHLLYQLLWNMFSKEVELADSMQTLFRGN-SLASKIMTFCFKVYGATYLQKLLDPLLRIV 111 (333)
T ss_dssp CGGGHHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSSSSSTTSTTCSC-CTTHHHHHHHHHHHHTTHHHHSSSCC----
T ss_pred CHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCHhHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666788777665555 788899999999886656899999875 799999998877766779999887544333
No 94
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=50.06 E-value=4.8 Score=34.15 Aligned_cols=28 Identities=11% Similarity=0.409 Sum_probs=16.5
Q ss_pred eEEeehhhHHHHHHHHHhhheeeeccch
Q psy15505 1606 AMYGGIAIITILFLIFIAFLIAYRRKST 1633 (2400)
Q Consensus 1606 ~i~~~~~~~~~l~li~~~~~~~yrrks~ 1633 (2400)
.++++++..+++++++|++++.|++|.|
T Consensus 10 vl~avlal~vi~iisLIiLi~~w~qKPr 37 (39)
T 2l6w_A 10 VISAILALVVLTIISLIILIMLWQKKPR 37 (39)
Confidence 4455555555555555566667877765
No 95
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=44.04 E-value=19 Score=35.69 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=35.4
Q ss_pred echhhHHhhhccCCCCCCCCCCCcceEEeeCCCCcEEEecCCCCceeeCceEEEeeccCCCCCCCcEEEEEee
Q psy15505 1862 VKEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSK 1934 (2400)
Q Consensus 1862 vKeKild~~yk~~p~s~rp~~~~~dlew~~~~~~~~~L~d~D~ts~~~~~w~rlNTl~hY~v~d~a~~~l~~~ 1934 (2400)
+|+||-+. -+.| ++.+.|.|+.+.+...--.++|. .||.+|+|.||++|-|+-+
T Consensus 30 lK~ki~~~--~Gip------~~~QrLi~~~~~~~~~g~~l~d~-----------~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 30 IKENVFTH--FATP------PEYMQLQLIDDRGITIEKNMAND-----------KQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp HHHHHHTT--SCCC------GGGEEEEEECTTSCEEESSCCTT-----------SBGGGGTCCTTCEEEEEEC
T ss_pred HHHHHHHH--HCCC------HHHEEEEEecCCCCceeeEcCCC-----------CCHHHCCCCCCCEEEEEeC
Confidence 89999543 2444 55667887765433222222221 2899999999999999864
No 96
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A
Probab=36.69 E-value=2.1e+02 Score=38.26 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=45.8
Q ss_pred CCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCeeeecccceeecccEEEEEeCCCCCCCCccccEEEEEc
Q psy15505 915 NPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVCQVDGPGTRGSREGPVIVKIE 994 (2400)
Q Consensus 915 ~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~~C~v~~~~y~~st~IvC~tpps~~~~~~~G~V~V~V~ 994 (2400)
.|.|..+-|..|-. |.+++|+|++||... ..|+|++..-.+. ....++|.-.+|... .|...|.|.
T Consensus 498 ~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~w~~~~~~~~~~~~~-----~g~~~~~~~ 563 (683)
T 3bmv_A 498 SPLIGHVGPTMTKA--GQTITIDGRGFGTTS----GQVLFGSTAGTIV---SWDDTEVKVKVPSVT-----PGKYNISLK 563 (683)
T ss_dssp CCEEEEEECSEECT--TCEEEEEEECCCSSC----CEEEETTEECEEE---EECSSEEEEECCCCC-----SEEEEEEEE
T ss_pred CCceecccccccCC--CceEEEecccCCCcc----eEEEEeccccccc---cccCceEEEECCCCC-----CceEEEEEE
Confidence 58899999887644 457999999998654 4688988854443 233567887775432 466777765
No 97
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=35.08 E-value=13 Score=36.61 Aligned_cols=9 Identities=0% Similarity=0.316 Sum_probs=5.4
Q ss_pred hHHHHHHHH
Q psy15505 1635 NTRVLKNMQ 1643 (2400)
Q Consensus 1635 ~~r~~k~~~ 1643 (2400)
-.|||+|.+
T Consensus 40 DrrE~~kFE 48 (79)
T 2knc_B 40 DRKEFAKFE 48 (79)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 346677665
No 98
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=35.04 E-value=40 Score=30.61 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=33.2
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccC
Q psy15505 1631 KSTENTRVLKNMQEQMDILELRVAAECKEAFAELQTEITDLTGDL 1675 (2400)
Q Consensus 1631 ks~~~~r~~k~~~~qme~lE~~V~~eck~~FaeLqt~m~dl~~dl 1675 (2400)
+..-|+|.++|++..+|.||-.+..+ |+-+..++.+|...-.+|
T Consensus 6 ~aefAERsV~KLek~ID~LEdeL~~e-Kek~~~i~~eLD~tl~el 49 (52)
T 2z5i_A 6 KNYHLENEVARLKKLVDDLEDELYAQ-KLKYKAISEELDHALNDM 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999887765 666777777665544444
No 99
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=33.07 E-value=14 Score=31.53 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=10.1
Q ss_pred eEEeehhhHHHHHH-HHHhhheeeec
Q psy15505 1606 AMYGGIAIITILFL-IFIAFLIAYRR 1630 (2400)
Q Consensus 1606 ~i~~~~~~~~~l~l-i~~~~~~~yrr 1630 (2400)
+|++.+++++++++ +++++++++||
T Consensus 14 ~I~~~vv~Gv~ll~~iv~~~~~~~rR 39 (41)
T 2k9y_A 14 AVIGGVAVGVVLLLVLAGVGFFIHRR 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred EEEeehhHHHHHHHHHHHHheeEeee
Confidence 34444444444444 33333344443
No 100
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=31.48 E-value=2.3e+02 Score=37.97 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=48.5
Q ss_pred CcEEEEEecCceecCCCcEEEEEeecCCCCCcEEEEECCceeEEEEecCceEEEEcCCCCCCceeEeE
Q psy15505 1008 DPVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLS 1075 (2400)
Q Consensus 1008 ~P~ItsIsP~~GP~sGGT~VTItGs~L~~gs~v~V~IG~~~C~i~s~s~t~I~C~Tp~~~~~~~v~V~ 1075 (2400)
.|.|..+.|..|.. |.+++|+|++|+.+ ..+|+|++..-.+.+.++++|.-..|.. ..+...|+
T Consensus 498 ~p~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~g~~~~~ 561 (686)
T 1qho_A 498 APQIGSVAPNMGIP--GNVVTIDGKGFGTT-QGTVTFGGVTATVKSWTSNRIEVYVPNM-AAGLTDVK 561 (686)
T ss_dssp SCEEEEEESSEECT--TCEEEEEEECCCSS-CCEEEETTEECCEEEECSSEEEEECCSC-CCEEEEEE
T ss_pred CCccccccccccCC--CCEEEEEeecCCCc-ceEEEEecceeeEEEcCCCcEEEecCCC-CCCceEEE
Confidence 58888888888765 66799999999764 3369999975566677888888777753 45677777
No 101
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1
Probab=28.36 E-value=3.2e+02 Score=36.48 Aligned_cols=66 Identities=26% Similarity=0.352 Sum_probs=45.3
Q ss_pred CCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCeeeecccceeecccEEEEEeCCCCCCCCccccEEEEEc
Q psy15505 915 NPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVCQVDGPGTRGSREGPVIVKIE 994 (2400)
Q Consensus 915 ~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~~C~v~~~~y~~st~IvC~tpps~~~~~~~G~V~V~V~ 994 (2400)
.|.|..+.|..|-. |.+++|.|++||... ..|.|++..-.+. ....++|.-.+|... .|...+.|.
T Consensus 494 ~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~w~~~~~~~~~~~~~-----~g~~~~~~~ 559 (680)
T 1cyg_A 494 TPIIGHVGPMMGQV--GHQVTIDGEGFGTNT----GTVKFGTTAANVV---SWSNNQIVVAVPNVS-----PGKYNITVQ 559 (680)
T ss_dssp SCEEEEEECSEECT--TCEEEEEEECCCSSC----CEEEETTEECCEE---ECCSSEEEEECCSCC-----SEEEEEEEE
T ss_pred CCceeeccccccCC--CceEEEEeeecCCcc----eEEEEeeeecccc---cccCceEEEEcCCCC-----CceeEEEEE
Confidence 58899999987644 455999999998654 4789999854443 233567877765332 455666664
No 102
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.08 E-value=57 Score=34.35 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=36.0
Q ss_pred echhhHHhhhccCCCCCCCCCCCcceEEeeCCCCcEEEecCCCCceeeCceEEEeeccCCCCCCCcEEEEEeee
Q psy15505 1862 VKEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQ 1935 (2400)
Q Consensus 1862 vKeKild~~yk~~p~s~rp~~~~~dlew~~~~~~~~~L~d~D~ts~~~~~w~rlNTl~hY~v~d~a~~~l~~~~ 1935 (2400)
+|+++-..+ +.| ++.+.|-+ .|+ +|.|+| ||.+|+|.||.+|-|+-+.
T Consensus 42 LKe~ls~~~--~iP------~e~qrLIy----~GK-iLKD~e-------------TL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 42 LKDHFSHLL--GIP------HSVLQIRY----SGK-ILKNNE-------------TLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp HHHHHHHHH--TCC------TTTEEEEE----TTE-EECSSC-------------CHHHHSCCSSCEEEEEEEE
T ss_pred HHHHHHhhh--CCC------hHHEEEEE----CCe-EcCCcc-------------hHHHcCCCCCCEEEEEEec
Confidence 888887765 554 34445554 344 789876 7899999999999999877
No 103
>3fay_A P195, RAS GTPase-activating-like protein iqgap1; all alpha, calmodulin-binding, cell membrane, membrane, phosphoprotein, membrane protein; 2.20A {Homo sapiens}
Probab=25.45 E-value=78 Score=39.57 Aligned_cols=110 Identities=21% Similarity=0.251 Sum_probs=74.1
Q ss_pred HHHHhhccCchhHhHHHHhhccCCCCCcccchhhHHHHHHHHHH---------HHHHHHHHHHHHHhcC-CCCCcccccc
Q psy15505 1718 RLFGQLIQNKTFLLLFIRTLESNRYFSMRDRVNVASLIMVTLQN---------ILKTLLAELIEKCMEG-KSHPKLLLRR 1787 (2400)
Q Consensus 1718 ~~f~~ll~~k~Fl~~fi~tlE~q~~fs~rdr~~~aSLl~v~l~~---------il~~Ll~~li~~~~~~-~~~pkl~lRr 1787 (2400)
.+|.-|-.++..|-..++.+... +....+.++++ .|-| .|-.|+.++|+.-+++ -.+|.-+||
T Consensus 16 ~LfylLQt~P~yla~L~~~~~~~-----~~~~~~~~v~~-~lf~~~~~~REe~lll~li~~ll~~Ei~~~~~~~~~lfR- 88 (387)
T 3fay_A 16 HLFYLLQTNPTYLAKLIFQMPQN-----KSTKFMDSVIF-TLYNYASNQREEYLLLRLFKTALQEEIKSKVDQIQEIVT- 88 (387)
T ss_dssp HHHHHHHHCHHHHHHHHHTSCCC-----SCCHHHHHHHH-HHTTTTCSHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHH-
T ss_pred HHHHHHcCCHHHHHHHHHhcChh-----hhhHHHHHHHH-hhhCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHc-
Confidence 45777778888888888877643 23334555544 3333 6778888888888764 247898887
Q ss_pred chHHHHHHHHHHHH-HHHhHHhhhhcCchhHHHHHHHHccccccCcce
Q psy15505 1788 TESVAEKMLSSWFT-FLLYKFLRECAGEPLYLLFRAMKQQVDKGPVDA 1834 (2400)
Q Consensus 1788 tEsvvEkmltnW~s-~~ly~~l~~~ag~pl~~L~~aik~QvekGPvDa 1834 (2400)
..|++-||+.+.|- .-=..||++..|..+=.++.-=+--+|=-|+..
T Consensus 89 ~Ns~~tk~l~~y~r~~~g~~yL~~~L~~~i~~i~~~~~l~~E~DP~ki 136 (387)
T 3fay_A 89 GNPTVIKMVVSFNRGARGQNALRQILAPVVKEIMDDKSLNIKTDPVDI 136 (387)
T ss_dssp SCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHCTTCCCCCCHHHH
T ss_pred CCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCCCCeecCHHHH
Confidence 56889999999887 455789999888766655432111345455443
No 104
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=24.84 E-value=10 Score=32.30 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=14.8
Q ss_pred ceEEeehhhHHHHHHHHHh-hheeeecc
Q psy15505 1605 TAMYGGIAIITILFLIFIA-FLIAYRRK 1631 (2400)
Q Consensus 1605 ~~i~~~~~~~~~l~li~~~-~~~~yrrk 1631 (2400)
.+|+|++++.++-++++++ +++++|||
T Consensus 11 GaIAGiVvG~v~gv~li~~l~~~~~rrr 38 (38)
T 2k1k_A 11 GEIVAVIFGLLLGAALLLGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CceeeeehHHHHHHHHHHHHHHHHeecC
Confidence 4677877776544333333 34456664
No 105
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=29.58 E-value=17 Score=31.65 Aligned_cols=27 Identities=15% Similarity=0.253 Sum_probs=17.4
Q ss_pred ceEEeehhhHHHHHHHHHhhheeeecc
Q psy15505 1605 TAMYGGIAIITILFLIFIAFLIAYRRK 1631 (2400)
Q Consensus 1605 ~~i~~~~~~~~~l~li~~~~~~~yrrk 1631 (2400)
.|+||+.++++.+..++++-+++.|||
T Consensus 17 ga~iGL~v~gVai~~vIVvsl~mlRrr 43 (43)
T 2llm_A 17 GAIIGLMVGGVVIATVIVITLVMLKKK 43 (43)
Confidence 467888777666666555555566664
No 106
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Probab=22.70 E-value=4.7e+02 Score=34.95 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=44.3
Q ss_pred CCeEEEEecCcccCCCCcEEEEEeecCCCccCCccceEEEeCee---eecccceeecccEEEEEeCCCCCCCCccccEEE
Q psy15505 915 NPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGIT---CQPYESLYNRTTQIVCQVDGPGTRGSREGPVIV 991 (2400)
Q Consensus 915 ~P~ItsI~P~sGp~~GGT~VTI~GsNfg~~~~di~~~V~Vgg~~---C~v~~~~y~~st~IvC~tpps~~~~~~~G~V~V 991 (2400)
.|.|..+-|..|-. |.+++|+|++||... ..|.|++.. -.+ .....++|.-.+|... .|...+
T Consensus 498 ~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~w~~~~~~~~~~~~~-----~g~~~~ 563 (686)
T 1d3c_A 498 TPTIGHVGPMMAKP--GVTITIDGRGFGSSK----GTVYFGTTAVSGADI---TSWEDTQIKVKIPAVA-----GGNYNI 563 (686)
T ss_dssp SCEEEEEECSEECT--TCEEEEEEECCCSSC----CEEEETTEEECGGGE---EEECSSEEEEECCCCC-----SEEEEE
T ss_pred CCceeccccccccC--CceEEEeeeccCCcc----eEEEEeeeecccccc---ccccCceEEEEcCCCC-----CceeEE
Confidence 48999999987543 567999999998654 478888874 222 2233567887775332 455666
Q ss_pred EEc
Q psy15505 992 KIE 994 (2400)
Q Consensus 992 ~V~ 994 (2400)
.|.
T Consensus 564 ~~~ 566 (686)
T 1d3c_A 564 KVA 566 (686)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 107
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=21.16 E-value=19 Score=33.91 Aligned_cols=10 Identities=20% Similarity=0.391 Sum_probs=5.9
Q ss_pred eeccchHhHH
Q psy15505 1628 YRRKSTENTR 1637 (2400)
Q Consensus 1628 yrrks~~~~r 1637 (2400)
+||+.+||+|
T Consensus 34 crhRrrqAeR 43 (70)
T 2klu_A 34 SRHRRRQAER 43 (70)
T ss_dssp SSCCSSSCTT
T ss_pred HHHHHHHHHH
Confidence 5566666654
No 108
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=21.08 E-value=59 Score=32.10 Aligned_cols=63 Identities=19% Similarity=0.320 Sum_probs=35.0
Q ss_pred ccceee-eEEeeechhhHHhhhccCCCCCCCCCCCcceEEeeCCCCcEEEecCCCCceeeCceEEEeeccCCCCCCCcEE
Q psy15505 1851 HAIDFK-PMTVYVKEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDGGCL 1929 (2400)
Q Consensus 1851 ~~i~~~-~l~l~vKeKild~~yk~~p~s~rp~~~~~dlew~~~~~~~~~L~d~D~ts~~~~~w~rlNTl~hY~v~d~a~~ 1929 (2400)
+.+|.+ |..+.||+ +++.+++......-++ +.. |..-....++|.+.| +|++|+|.||..+
T Consensus 17 ~~~DLRIP~~~tvK~-Li~~l~ea~~l~~~~~-~~~---~irv~NK~~~L~~~~-------------~L~d~~ItnGD~L 78 (81)
T 2bps_A 17 SVFDLRLSDYHPVKK-VIDIAWQAQSVSMPPR-EGH---WIRVVNKDKVFSGEC-------------KLSDCGITNGDRL 78 (81)
T ss_dssp CEEEEEEETTSBTTH-HHHHHHHHSCCCSCCC-TTC---EEEEGGGTEEEETTS-------------BTGGGTCCTTCEE
T ss_pred ceEEEECCCchhHHH-HHHHHHHHhCCCcCCC-CCC---EEEEecCCEEEcCCC-------------EEeeCCcCCCCEE
Confidence 344444 33333775 4455544433333222 222 333334556777766 5789999999998
Q ss_pred EE
Q psy15505 1930 NL 1931 (2400)
Q Consensus 1930 ~l 1931 (2400)
.+
T Consensus 79 ei 80 (81)
T 2bps_A 79 EI 80 (81)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 109
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=20.50 E-value=18 Score=31.75 Aligned_cols=7 Identities=29% Similarity=0.420 Sum_probs=2.9
Q ss_pred heecccc
Q psy15505 344 AYRRKST 350 (2400)
Q Consensus 344 ~yrRKs~ 350 (2400)
+.||+.+
T Consensus 34 ~~RRr~~ 40 (44)
T 2ks1_B 34 FMRRRHI 40 (44)
T ss_dssp HHHTTTC
T ss_pred HhhhhHh
Confidence 3344443
Done!