RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15505
(2400 letters)
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane,
transmembra membrane protein, signaling protein; 1.99A
{Mus musculus} PDB: 3ryt_A*
Length = 627
Score = 779 bits (2012), Expect = 0.0
Identities = 364/618 (58%), Positives = 447/618 (72%), Gaps = 43/618 (6%)
Query: 1632 STENTRVLKNMQEQMDILELRVAAECKEAFAELQTEITDLTGDLTSGGIPFLDYRTYAMM 1691
+ + R LK +Q QMD LE RVA ECKEAFAELQT+I +LT + IPFLDYRTYA+
Sbjct: 2 TQDADRTLKRLQLQMDNLESRVALECKEAFAELQTDINELTNHMDGVQIPFLDYRTYAVR 61
Query: 1692 ILFPNSEHHAVLQFERPELLHKEKGLRLFGQLIQNKTFLLLFIRTLESNRYFSMRDRVNV 1751
+LFP E H VL+ E + EK LRLFGQL+ ++ FLL FI TLE+ FSMRDR V
Sbjct: 62 VLFPGIEAHPVLK-ELDTPPNVEKALRLFGQLLHSRAFLLTFIHTLEAQSSFSMRDRGTV 120
Query: 1752 ASLIMVTLQ-------NILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWFTFLL 1804
ASL MV LQ +LK LLA+LIEK +E K+HPKLLLRRTESVAEKML++WFTFLL
Sbjct: 121 ASLTMVALQSRLDYATGLLKQLLADLIEKNLESKNHPKLLLRRTESVAEKMLTNWFTFLL 180
Query: 1805 YKFLRECAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLSEEKLIRHAIDFKPMTVYV-- 1862
+KFL+ECAGEPL+LL+ A+KQQ++KGP+DAIT EARYSLSE+KLIR ID+K +T++
Sbjct: 181 HKFLKECAGEPLFLLYCAIKQQMEKGPIDAITGEARYSLSEDKLIRQQIDYKTLTLHCVC 240
Query: 1863 ----------------------KEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILY 1900
K+K LDT+Y+ PYS RP+ +D+D+EWR G R+IL
Sbjct: 241 PESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQ 300
Query: 1901 DYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQ---YNLSILSEKTD---KYETLNLS 1954
D D TTK+E +WK+VN+L HY+V DG + LV KQ YN++ T +YE+L +
Sbjct: 301 DEDITTKIECDWKRVNSLAHYQVTDGSLVALVPKQVSAYNMANSFTFTRSLSRYESLLRA 360
Query: 1955 KMG-----RNTSPLNRDHDGMAKEWHLVKHHDSDNQKEGERSNKMVSEIYLTRLLATKGT 2009
L D + K WHLV++HD + +EG+R +KMVSEIYLTRLLATKGT
Sbjct: 361 ASSPDSLRSRAPMLTPDQEAGTKLWHLVRNHDHTDHREGDRGSKMVSEIYLTRLLATKGT 420
Query: 2010 LQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRF 2069
LQKFVDDLFET+FSTAHRGSALPLAIKYMFDFLD+QA I+DP+V HTWKSN LPLRF
Sbjct: 421 LQKFVDDLFETVFSTAHRGSALPLAIKYMFDFLDEQADQRQISDPDVRHTWKSNCLPLRF 480
Query: 2070 WVNLIKNPNFVFDIHKSNIVDSCLSVVAQTFMDSCSTSDHRLGKDSPSSKLLYAKDIPAY 2129
WVN+IKNP FVFDIHK++I D+CLSVVAQTFMDSCSTS+HRLGKDSPS+KLLYAKDIP Y
Sbjct: 481 WVNVIKNPQFVFDIHKNSITDACLSVVAQTFMDSCSTSEHRLGKDSPSNKLLYAKDIPNY 540
Query: 2130 KEWVERYYSDIKSMQAISDQDMNAMLAEESRLHNSEFSTNCALYELYTYASKYNEQLTVT 2189
K WVERYY DI M +ISDQDM+A L E+SRLH ++F+ AL ELY Y +KY +++ +
Sbjct: 541 KSWVERYYRDIAKMASISDQDMDAYLVEQSRLHANDFNVLSALSELYFYVTKYRQEILTS 600
Query: 2190 LEEDEFSQKQRLAYKLEQ 2207
L+ D +K +L KLEQ
Sbjct: 601 LDRDASCRKHKLRQKLEQ 618
Score = 40.9 bits (95), Expect = 0.006
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 349 STENTRVLKNMQEQMDILELRVAAECK 375
+ + R LK +Q QMD LE RVA ECK
Sbjct: 2 TQDADRTLKRLQLQMDNLESRVALECK 28
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane,
transmembrane receptor, cell membrane, glycoprotein,
phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Length = 644
Score = 764 bits (1973), Expect = 0.0
Identities = 280/632 (44%), Positives = 386/632 (61%), Gaps = 59/632 (9%)
Query: 1622 IAFLIAYRRKSTENTRVLKNMQEQMDILELRVAAECKEAFAELQTEITDLTGDLTSGGIP 1681
+ +YRRKS + R K +Q Q++ LE V CK+ F +L TE+TDLT DL GIP
Sbjct: 14 LVPRGSYRRKSKQALRDYKKVQIQLENLESSVRDRCKKEFTDLMTEMTDLTSDLLGSGIP 73
Query: 1682 FLDYRTYAMMILFPNSEHHAVL-QFERPELLH--KEKGLRLFGQLIQNKTFLLLFIRTLE 1738
FLDY+ YA I FP + PE E+GL L+ +K FL FI TLE
Sbjct: 74 FLDYKVYAERIFFPGHRESPLHRDLGVPESRRPTVEQGLGQLSNLLNSKLFLTKFIHTLE 133
Query: 1739 SNRYFSMRDRVNVASLIMVTLQ-------NILKTLLAELIEKCMEGKSHPKLLLRRTESV 1791
+ R FS RDR VASL+ V L +IL+TLL++L+ + + +PKL+LRRTE+V
Sbjct: 134 TQRTFSARDRAYVASLLTVALHGKLEYFTDILRTLLSDLVAQYVA--KNPKLMLRRTETV 191
Query: 1792 AEKMLSSWFTFLLYKFLRECAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLSEEKLIRH 1851
EK+L++W + LY F+R+ GEPLY+LFR +K QVDKGPVD++T +A+Y+L++ +L+R
Sbjct: 192 VEKLLTNWMSICLYTFVRDSVGEPLYMLFRGIKHQVDKGPVDSVTGKAKYTLNDNRLLRE 251
Query: 1852 AIDFKPMTVYV---------------------------KEKSLDTIYRATPYSLRPRKDD 1884
++++P+T+ KEK LD +Y+ P + RP
Sbjct: 252 DVEYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRT 311
Query: 1885 LDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQYNLSILSEK 1944
LDVEWR+G G LIL D D T++V+G W+++NTL HY+VPDG + LV + +
Sbjct: 312 LDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVALVPCLTKHVLRENQ 371
Query: 1945 TDKYETLNLSKMGRNTSPLNRDHDGMAKEWHLVKHHDSDNQKEGERS---------NKMV 1995
G T L +G + WHLVK D R K +
Sbjct: 372 DYV--------PGERTPMLEDVDEGGIRPWHLVKPSDEPEPPRPRRGSLRGGERERAKAI 423
Query: 1996 SEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPE 2055
EIYLTRLL+ KGTLQKFVDDLF+ I ST+ +PLA+KY FD LD+QA HGI+D +
Sbjct: 424 PEIYLTRLLSMKGTLQKFVDDLFQVILSTSR---PVPLAVKYFFDLLDEQAQQHGISDQD 480
Query: 2056 VVHTWKSNSLPLRFWVNLIKNPNFVFDIHKSNIVDSCLSVVAQTFMDSCSTSDHRLGKDS 2115
+H WK+NSLPLRFW+N+IKNP FVFD+ S+ +D+ L V+AQTFMD+C+ +DH+LG+DS
Sbjct: 481 TIHIWKTNSLPLRFWINIIKNPQFVFDVQTSDNMDAVLLVIAQTFMDACTLADHKLGRDS 540
Query: 2116 PSSKLLYAKDIPAYKEWVERYYSDIKSMQAISDQDMNAMLAEESRLHNSEFSTNCALYEL 2175
P +KLLYA+DIP YK VERYY+DI+ SDQ+MN++LAE S ++ + AL+EL
Sbjct: 541 PINKLLYARDIPRYKRMVERYYADIRQTVPASDQEMNSVLAELSWNYSGDLGARVALHEL 600
Query: 2176 YTYASKYNEQLTVTLEEDEFSQKQRLAYKLEQ 2207
Y Y +KY +Q+ LEED +QK +L Y+L+Q
Sbjct: 601 YKYINKYYDQIITALEEDGTAQKMQLGYRLQQ 632
Score = 47.1 bits (111), Expect = 8e-05
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 339 IAFLIAYRRKSTENTRVLKNMQEQMDILELRVAAECKAPIY 379
+ +YRRKS + R K +Q Q++ LE V CK
Sbjct: 14 LVPRGSYRRKSKQALRDYKKVQIQLENLESSVRDRCKKEFT 54
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor,
leucine rich repeat, receptor ectodomain, signaling
protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B
1shy_B 1ssl_A
Length = 727
Score = 249 bits (637), Expect = 1e-69
Identities = 131/662 (19%), Positives = 219/662 (33%), Gaps = 76/662 (11%)
Query: 385 LILCVS---GTCTVRSLQN-----ISDIVQNVREAVVANNGNASTFAFIAPGPPKPPSTH 436
LI C S GTC + I V + + A G S
Sbjct: 109 LISCGSVNRGTCQRHVFPHNHTADIQSEVHCIFSPQIEEPSQCPDCVVSALGAKVLSSVK 168
Query: 437 ----VMYVGVTFTGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVNNLARERYI 492
+VG T + + SI+ R L + +T + + V R+ Y
Sbjct: 169 DRFINFFVGNTINSSYFPDHPLHSISVRRLKET---KDGFMFLTDQSYIDVLPEFRDSYP 225
Query: 493 INYVYGFSSEGFSYFLTTQLKSNIGTSFYISKLVRICHDDSNYYSYTEIPITC------- 545
I YV+ F S F YFLT Q ++ + ++++R C +S +SY E+P+ C
Sbjct: 226 IKYVHAFESNNFIYFLTVQRETL-DAQTFHTRIIRFCSINSGLHSYMEMPLECILTEKRK 284
Query: 546 -NSNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRPKNSSA 604
S + +N++QA +V KPG+ LA +G + DD+LFAVFA+S+ S P + SA
Sbjct: 285 KRSTKKEVFNILQAAYVSKPGAQLARQIGASLNDDILFAVFAQSKP----DSAEPMDRSA 340
Query: 605 LCIYPLASIRRKFMQNIKTCFSGQGNRGLDFIS-PAHPCVQTKLQTIGEDFCGLDVNT-P 662
+C +P+ + F + + R L P H + C +
Sbjct: 341 MCAFPIKYVNDFFNKIVNKN----NVRCLQHFYGPNHEHCFNRTLLRNSSGCEARRDEYR 396
Query: 663 LGGENPIEAVAVLNF---SVRCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSSIAIEYG 719
++ V + V T+++ GD T+ +GT G +VVV S + +
Sbjct: 397 TEFTTALQRVDLFMGQFSEVLLTSISTFIKGDLTIANLGTSEGRFMQVVVSRSGPSTPHV 456
Query: 720 DVKVDENMTVN--ADLHLDSKAMHLYVMTERRVSKVKVQECKVYKTCCLGFQPTIAACVA 777
+ +D + H ++ + V+T ++++K+ + C++
Sbjct: 457 NFLLDSHPVSPEVIVEHTLNQNGYTLVITGKKITKIPLNGLGCRHFQSCSQ------CLS 510
Query: 778 SNSKKAVNVKVHIVGQFIAQTRFVCQFNIEGRVTSVNAQLLGDVIYCDPMEFTYTSRLSN 837
+ + I + +
Sbjct: 511 APPFVQCGWCHDKCVRSEECLSGTWTQQICLPAIYKVFPNSAPLEGGTRLTICGWDFGFR 570
Query: 838 INASFAVIWGGSKPLDNPDNVHVNIYRCR----DLANNCGLCLALPEKYGCGWCQSSKRC 893
N F V + C + N C P
Sbjct: 571 RNNKFD---------LKKTRVLLGNESCTLTLSESTMNTLKCTVGPAMNKHFNMSII--- 618
Query: 894 EIFEQCDKGLGTWLNRNHTCPNPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVS 953
G GT + +P ITS PK GP GGT +T+ G L +S
Sbjct: 619 -----ISNGHGTTQYSTFSYVDPVITSISPKYGPMAGGTLLTLTGNYLNSGNSRH---IS 670
Query: 954 VAGITCQPYESLYNRTTQIVCQVDGPGTRGSREGPVIVKIEDFRGQSKDNYQFV-DPVIK 1012
+ G TC + + C P S E V +KI D + + + D
Sbjct: 671 IGGKTCT---LKSVSNSILECYT--PAQTISTEFAVKLKI-DLANRETSIFSYREDLHHH 724
Query: 1013 SI 1014
Sbjct: 725 HH 726
Score = 124 bits (312), Expect = 9e-29
Identities = 58/222 (26%), Positives = 83/222 (37%), Gaps = 15/222 (6%)
Query: 858 VHVNIYRCRDLANNCGLCLALPEKYGCGWCQSSKRCEIFEQCDKGLGTWLNRNHTCPNPE 917
+ +N CR +C CL+ P CGWC P
Sbjct: 492 IPLNGLGCRH-FQSCSQCLSAPPFVQCGWCHDKCVRSEECLSG-------TWTQQICLPA 543
Query: 918 ITSFQPKSGPWEGGTNVTINGINLGK----TFKDIYGGVSVAGITCQPYESLYNRTTQIV 973
I P S P EGGT +TI G + G F V + +C S +
Sbjct: 544 IYKVFPNSAPLEGGTRLTICGWDFGFRRNNKFDLKKTRVLLGNESCTLTLSEST-MNTLK 602
Query: 974 CQVDGPGTRGSREGPVIVKIEDFRGQSKDNYQFVDPVIKSIQPLQGPRSGGTILHISGSH 1033
C V GP +I+ Q + +VDPVI SI P GP +GGT+L ++G++
Sbjct: 603 CTV-GPAMNKHFNMSIIISNGHGTTQY-STFSYVDPVITSISPKYGPMAGGTLLTLTGNY 660
Query: 1034 MNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLS 1075
+N+G+ I C + SV + C T A +
Sbjct: 661 LNSGNSRHISIGGKTCTLKSVSNSILECYTPAQTISTEFAVK 702
Score = 82.4 bits (202), Expect = 1e-15
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 21 TKGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSM 80
GP +GGT+L ++G+++N+G+ I C + SV + C T A + +
Sbjct: 644 KYGPMAGGTLLTLTGNYLNSGNSRHISIGGKTCTLKSVSNSILECYTPAQTISTEFAVKL 703
Query: 81 KFDKGTRFFDGSLYEYVEDPTIDSV 105
K D R + S++ Y ED
Sbjct: 704 KIDLANR--ETSIFSYREDLHHHHH 726
Score = 44.6 bits (104), Expect = 5e-04
Identities = 40/173 (23%), Positives = 58/173 (33%), Gaps = 33/173 (19%)
Query: 15 NQCVRQTKGPRSGGTILHISGSHMNAGSRIE-------AFIDDLPCRITSVEP--EMAHC 65
V P GGT L I G + + + C +T E C
Sbjct: 544 IYKVFPNSAPLEGGTRLTICGWDFGFRRNNKFDLKKTRVLLGNESCTLTLSESTMNTLKC 603
Query: 66 VTS-ASDRQRNGKLSMKFDKGTRFFDGSLYEYVEDPTIDSVDSGIQSGQGLKYPK-GFPA 123
A ++ N + + GT S + YV DP I S+ PK G A
Sbjct: 604 TVGPAMNKHFNMSIIISNGHGTT--QYSTFSYV-DPVITSI-----------SPKYGPMA 649
Query: 124 GGTRINVVGKNLLYIKDPHIYVVYKDKKFVNSCEVM--SNNYMICTAPTITGA 174
GGT + + G L HI + +C + SN+ + C P T +
Sbjct: 650 GGTLLTLTGNYLNSGNSRHISI------GGKTCTLKSVSNSILECYTPAQTIS 696
Score = 41.5 bits (96), Expect = 0.004
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 232 LTINGQHLDRASQESDVIVKIGTGFCNVTSVSRLQLTCRPPAEQPP 277
LT+ G +L+ + + IG C + SVS L C PA+
Sbjct: 654 LTLTGNYLNSGN---SRHISIGGKTCTLKSVSNSILECYTPAQTIS 696
Score = 41.5 bits (96), Expect = 0.004
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 1494 LTINGQHLDRASQESDVIVKIGTGFCNVTSVSRLQLTCRPPAEQPP 1539
LT+ G +L+ + + IG C + SVS L C PA+
Sbjct: 654 LTLTGNYLNSGN---SRHISIGGKTCTLKSVSNSILECYTPAQTIS 696
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL
signalling, SI protein; HET: NAG; 2.19A {Mus musculus}
PDB: 3okt_A*
Length = 681
Score = 244 bits (622), Expect = 3e-68
Identities = 142/604 (23%), Positives = 249/604 (41%), Gaps = 73/604 (12%)
Query: 378 IYHTNPILILCVS---GTCTVRSLQNISDIVQNVREAVVANNGNASTFAFIAPGPPKPPS 434
I ++ L+ C S G C + L ++ +V+ + + T
Sbjct: 88 IDYSENRLLACGSLYQGVCKLLRLDDLFILVEPSHKKEHYLSSVNKTGTMYGVIVRSEGE 147
Query: 435 THVMYVGVTFTGNSPYRSEVPSIASRSLDPERM------FQIADSAVTTGTRMFVNNLA- 487
+++G G Y P+++SR L + +++ V++ ++ + LA
Sbjct: 148 DGKLFIGTAVDGKQDY---FPTLSSRKLPRDPESSAMLDYELHSDFVSSLIKIPSDTLAL 204
Query: 488 RERYIINYVYGFSSEGFSYFLTTQLKS-------NIGTSFYISKLVRICHDDSNYYSYTE 540
+ I Y+YGF+S GF YFLT Q ++ + G FY S++VR+C DD ++SY
Sbjct: 205 VSHFDIFYIYGFASGGFVYFLTVQPETPDGMAINSAGDLFYTSRIVRLCKDDPKFHSYVS 264
Query: 541 IPITCNSNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRPK 600
+P C + +G +Y L+QA ++ KPG LA I++ +DVLFA+F++ + + + P
Sbjct: 265 LPFGC-TRAGVEYRLLQAAYLAKPGEALAQAFNISSDEDVLFAIFSKGQ----KQYHHPP 319
Query: 601 NSSALCIYPLASIRRKFMQNIKTCFSGQGNRGLDFISPAHPCVQTKLQTIGEDFCGLDVN 660
+ SALC +P+ +I + + +++C+ G+GN L+++ I ++FCGLD+N
Sbjct: 320 DDSALCAFPIRAINLQIKERLQSCYHGEGNLELNWLLGKDVQCTKAPVPIDDNFCGLDIN 379
Query: 661 TPLGGENPIEAVAVLNFS-VRCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSSIAIEYG 719
PLGG P+E + + S R T+VA+ Y+VVF+GT +G LKK+ +
Sbjct: 380 QPLGGSTPVEGLTLYTTSRDRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQY 439
Query: 720 DV--KVDENMTVNADLHLDSKAMHLYVMTERRVSKVKVQECKVYKTC--CLGFQ------ 769
++ + + D+ ++LYVM+ER+V++V V+ C+ Y TC CL
Sbjct: 440 EMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRVPVESCEQYTTCGECLSSGDPHCGW 499
Query: 770 -----------------------------PTIAACVASNSKKAVNVKVHIVGQFIAQTRF 800
++ S S + + +V
Sbjct: 500 CALHNMCSRRDKCQRAWEANRFAASISQCMSLEVHPNSISVSDHSRLLSLVVNDAPNLSE 559
Query: 801 VCQFNIEGRVTSVNAQLLGDVIYCDPMEFTYTSRLSNINASFAVIWGGSKPLDNPDNVHV 860
G +T V Q+ G + C + F + V
Sbjct: 560 GIA-CAFGNLTEVEGQVSGSQVICISPGPKDVPVIPLDQDWFGLELQLRSKETGKIFVST 618
Query: 861 NI--YRCRDLANNCGLCLALPEKYGCGWCQSSKRC-EIFEQCDKGLGTWLNRNHTCPNPE 917
Y C C C+ + C WC+ C C G +N + CP
Sbjct: 619 EFKFYNCSAHQ-LCLSCVNSA--FRCHWCKYRNLCTHDPTTCSFQEGR-INVSEDCPQGT 674
Query: 918 ITSF 921
Sbjct: 675 KHHH 678
Score = 117 bits (294), Expect = 1e-26
Identities = 59/205 (28%), Positives = 87/205 (42%), Gaps = 10/205 (4%)
Query: 1091 TCWDCLNRKDPYCGWCSLDNKCSLRSDCQDAAKDPLSWISYKSGRCTTITSVTPNQLQRT 1150
TC +CL+ DP+CGWC+L N CS R CQ A + S +C ++ +
Sbjct: 485 TCGECLSSGDPHCGWCALHNMCSRRDKCQRAWEANRFAASIS--QCMSLEVHPNSISVSD 542
Query: 1151 TARTLDLAIENLPKLPGQFLCAFTIAEKTLTTEAVKKTNGVGCITPRTDFLPSIPVGQHN 1210
+R L L + + P L CAF E + V CI+P +P IP+ Q
Sbjct: 543 HSRLLSLVVNDAPNLSEGIACAFGNLT---EVEGQVSGSQVICISPGPKDVPVIPLDQDW 599
Query: 1211 ITAKLSVRSS-NGPDFVTTKFMFFDCNTYSSCTQCVSSDFPCD-CIKCCQLLGDVIYCDP 1268
+L +RS G FV+T+F F++C+ + C CV+S F C C D C
Sbjct: 600 FGLELQLRSKETGKIFVSTEFKFYNCSAHQLCLSCVNSAFRCHWCKYRNLCTHDPTTCSF 659
Query: 1269 MEFTLTPRDYPISTPRLPMSGFSHN 1293
E + P+ H+
Sbjct: 660 QE---GRINVSEDCPQGTKHHHHHH 681
Score = 38.1 bits (87), Expect = 0.045
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
Query: 863 YRCRDLANNCGLCLALPEKYGCGWCQSSKRCEIFEQCDKGLGT--WLNRNHTCPNPEITS 920
+ CG CL+ + + CGWC C ++C + + C + E+
Sbjct: 477 VESCEQYTTCGECLSSGDPH-CGWCALHNMCSRRDKCQRAWEANRFAASISQCMSLEV-- 533
Query: 921 FQPKSGPWEGGTNVTINGIN 940
P S + + +N
Sbjct: 534 -HPNSISVSDHSRLLSLVVN 552
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein;
HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Length = 539
Score = 238 bits (608), Expect = 1e-67
Identities = 118/412 (28%), Positives = 209/412 (50%), Gaps = 30/412 (7%)
Query: 378 IYHTNPILILCVS---GTCTVRSLQNISDIVQNVREAVVANNGNASTFAFIAPGPPKPPS 434
I ++ L+ C S G C + L ++ +V+ + + T
Sbjct: 89 IDYSENRLLACGSLYQGVCKLLRLDDLFILVEPSHKKEHYLSSVNKTGTMYGVIVRSEGE 148
Query: 435 THVMYVGVTFTGNSPYRSEVPSIASRSLDPERM------FQIADSAVTTGTRMFVNNLA- 487
+++G G Y P+++SR L + +++ V++ ++ + LA
Sbjct: 149 DGKLFIGTAVDGKQDY---FPTLSSRKLPRDPESSAMLDYELHSDFVSSLIKIPSDTLAL 205
Query: 488 RERYIINYVYGFSSEGFSYFLTTQLKS-------NIGTSFYISKLVRICHDDSNYYSYTE 540
+ I Y+YGF+S GF YFLT Q ++ + G FY S++VR+C DD ++SY
Sbjct: 206 VSHFDIFYIYGFASGGFVYFLTVQPETPDGMAINSAGDLFYTSRIVRLCKDDPKFHSYVS 265
Query: 541 IPITCNSNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRPK 600
+P C + +G +Y L+QA ++ KPG LA I++ +DVLFA+F++ + + P
Sbjct: 266 LPFGC-TRAGVEYRLLQAAYLAKPGEALAQAFNISSDEDVLFAIFSKGQK----QYHHPP 320
Query: 601 NSSALCIYPLASIRRKFMQNIKTCFSGQGNRGLDFISPAHPCVQTKLQTIGEDFCGLDVN 660
+ SALC +P+ +I + + +++C+ G+GN L+++ I ++FCGLD+N
Sbjct: 321 DDSALCAFPIRAINLQIKERLQSCYHGEGNLELNWLLGKDVQCTKAPVPIDDNFCGLDIN 380
Query: 661 TPLGGENPIEAVAVLNFS-VRCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSSIAIEYG 719
PLGG P+E + + S R T+VA+ Y+VVF+GT +G LKK+ +
Sbjct: 381 QPLGGSTPVEGLTLYTTSRDRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQY 440
Query: 720 DV--KVDENMTVNADLHLDSKAMHLYVMTERRVSKVKVQECKVYKTC--CLG 767
++ + + D+ ++LYVM+ER+V++V V+ C+ Y TC CL
Sbjct: 441 EMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRVPVESCEQYTTCGECLS 492
Score = 57.7 bits (138), Expect = 4e-08
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 1091 TCWDCLNRKDPYCGWCSLDNKCSLRSDCQDAAKDPLSWISYKSGRCTTITSVTPNQ 1146
TC +CL+ DP+CGWC+L N CS R CQ A + + + S +C + Q
Sbjct: 486 TCGECLSSGDPHCGWCALHNMCSRRDKCQRAW-EANRFAASIS-QCMSSRENLYFQ 539
Score = 40.4 bits (93), Expect = 0.008
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 858 VHVNIYRCRDLANNCGLCLALPEKYGCGWCQSSKRCEIFEQCDKGLG--TWLNRNHTCPN 915
V + C + CG CL+ + + CGWC C ++C + + C +
Sbjct: 474 TRVPVESC-EQYTTCGECLSSGDPH-CGWCALHNMCSRRDKCQRAWEANRFAASISQCMS 531
Query: 916 PEITSF 921
+
Sbjct: 532 SRENLY 537
>4fww_A Macrophage-stimulating protein receptor; beta-propeller,
cysteine-knot, receptor tyrosine kinase, MAC stimulating
protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo
sapiens}
Length = 527
Score = 219 bits (557), Expect = 4e-61
Identities = 86/419 (20%), Positives = 146/419 (34%), Gaps = 34/419 (8%)
Query: 378 IYHTNPILILCVS---GTCTVRSLQNISDIVQNVREAVV----ANNGNASTFAFIAPGPP 430
+ P L+ C S G C + L+ V A + N + +P
Sbjct: 84 LDPALPALVSCGSSLQGRCFLHDLEPQGTAVHLAAPACLFSAHHNRPDDCPDCVASPLGT 143
Query: 431 KPPSTHVMYVGVTFTGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVNNLARER 490
+ + +S + S + RS+ R+ A + V
Sbjct: 144 RVTVVEQGQASYFYVASSLDAAVAASFSPRSVSIRRLKADASGFAPGFVALSVLPKHLVS 203
Query: 491 YIINYVYGFSSEGFSYFLTTQLKS-NIGTSFYISKLVRICHDDSNYYSYTEIPITC---- 545
Y I YV+ F + F YFLT Q S S ++L R+ + Y E+ + C
Sbjct: 204 YSIEYVHSFHTGAFVYFLTVQPASVTDDPSALHTRLARLSATEPELGDYRELVLDCRFAP 263
Query: 546 ------NSNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRP 599
+ G+ Y ++Q G+ LA +L I +VLF VF + +G
Sbjct: 264 KLVPRGSPEGGQPYPVLQVAHSAPVGAQLATELSIAEGQEVLFGVFVTGK----DGGPGV 319
Query: 600 KNSSALCIYPLASIRRKFMQNIKTCFSGQGN----RGLDFISPAHPCVQTKLQTIGEDFC 655
+S +C +P+ + + ++ C + RGLDF C
Sbjct: 320 GPNSVVCAFPIDLLDTLIDEGVERCCESPVHPGLRRGLDFFQSPSFCPNPPGLEALSPNT 379
Query: 656 GLDVNTPLGGENPIEAVAVLNF---SVRCTAVAATSTGDYTVVFIGTDTGHLKKVVVETS 712
+ PL + V + N V+ TA+ T + TV +GT G + +V + S
Sbjct: 380 SCR-HFPLLVSSSFSRVDLFNGLLGPVQVTALYVTRLDNVTVAHMGTMDGRILQVELVRS 438
Query: 713 SIAIEYGDVKVDENMTVNADLHLDSKAMHLYVMTERRVSKVKVQ--ECKVYKTC--CLG 767
+ Y + + HL + +V +V +Q C+ + TC CL
Sbjct: 439 LNYLLYVSNFSLGDSGQPVQRDVSRLGDHLLFASGDQVFQVPIQGPGCRHFLTCGRCLR 497
Score = 47.0 bits (110), Expect = 6e-05
Identities = 16/98 (16%), Positives = 24/98 (24%), Gaps = 11/98 (11%)
Query: 1025 TILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSESNTQHSFT 1084
L S +++ S P + S +
Sbjct: 433 VELVRSLNYLLYVSNFSLGDSGQPVQRDVSRLGDHLLFASGDQVFQVPIQGPGCRHFL-- 490
Query: 1085 ELVQTLTCWDCLN-RKDPYCGWCSLDNKCSLRSDCQDA 1121
TC CL CGWC N C + +C +
Sbjct: 491 ------TCGRCLRAWHFMGCGWCG--NMCGQQKECPGS 520
Score = 41.6 bits (96), Expect = 0.003
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 853 DNPDNVHVNIYRCRDLANNCGLCLALPEKYGCGWCQSSKRCEIFEQCDKGLGTWLNRNHT 912
D V + C CG CL GCGWC + C ++C G+W +
Sbjct: 474 DQVFQVPIQGPGC-RHFLTCGRCLRAWHFMGCGWCGN--MCGQQKECP---GSW--QQDH 525
Query: 913 CP 914
CP
Sbjct: 526 CP 527
>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling
protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB:
3nvq_B*
Length = 476
Score = 187 bits (476), Expect = 7e-51
Identities = 67/384 (17%), Positives = 130/384 (33%), Gaps = 50/384 (13%)
Query: 390 SGTCTVRSLQNISDIVQNVREAVVANNGNASTFAFIAPGPPKPPSTHVMYVGVTFTGNSP 449
G C VR L N+S VV+ + ST + + + V T+ P
Sbjct: 97 RGACEVRPLGNLSRNSLRNGTEVVSCHPQGSTAGVVYRAGRN--NRWYLAVAATYVLPEP 154
Query: 450 YRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVNNLARERYIINYVYGFSSEGFSYFLT 509
+ + A+ D + + + L +++V F G YF
Sbjct: 155 ETASRCNPAASDHDTAIALKDTEGRSLATQELGRLKLCEGAGSLHFVDAFLWNGSIYFPY 214
Query: 510 TQLKSNIGTSFYISKLVRICHDDSNYYSYTEIPITCNSNSGKQYNLVQAGFVGKPGSDLA 569
G + + RI + + + C G G L
Sbjct: 215 YPYNYTSGAATGWPSMARIAQSTEVLFQG-QASLDC-------------GHGHPDGRRLL 260
Query: 570 GDLGITAQDDVLFAVFAESEAPDGEGSNRPKNSSALCIYPLASIRRKFMQNIKTCFSGQG 629
+ DV VF+ + E R ++ALC++ ++ I+ + + + +
Sbjct: 261 LSSSLVEALDVWAGVFSAAAGEGQE--RRSPTTTALCLFRMSEIQARAKRVSWDFKTAES 318
Query: 630 NRGLDFISPAHPCVQTKLQTIGEDFCGLDVNTPLGGENPIEAVAVLNFSVRCTAVAATST 689
+ + + P + PI + +++ T+V T
Sbjct: 319 HCK-------------------------EGDQPERVQ-PIASSTLIHS--DLTSVYGTVV 350
Query: 690 GDYTVVFIGTDTGHLKKVVVETS-SIAIEYGDVKVDENMTVNADLHLD-SKAMHLYVMTE 747
+ TV+F+GT G L KV++ + + ++ E V L D K +++Y+
Sbjct: 351 MNRTVLFLGTGDGQLLKVILGENLTSNCPEVIYEIKEETPVFYKLVPDPVKNIYIYLTAG 410
Query: 748 RRVSKVKVQECKVYKTC--CLGFQ 769
+ V +++V C +K+C CL
Sbjct: 411 KEVRRIRVANCNKHKSCSECLTAT 434
Score = 60.8 bits (146), Expect = 3e-09
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 1091 TCWDCLNRKDPYCGWCSLDNKCSLRSDCQDAAKDPLSWISYKSG 1134
+C +CL DP+CGWC +C+ + DC + + +W+ SG
Sbjct: 426 SCSECLTATDPHCGWCHSLQRCTFQGDCVHSE-NLENWLDISSG 468
Score = 40.3 bits (93), Expect = 0.008
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 859 HVNIYRCRDLANNCGLCLALPEKYGCGWCQSSKRCEIFEQCDKGLGT--WL---NRNHTC 913
+ + C + +C CL + + CGWC S +RC C WL + C
Sbjct: 415 RIRVANC-NKHKSCSECLTATDPH-CGWCHSLQRCTFQGDCVHSENLENWLDISSGAKKC 472
Query: 914 P 914
P
Sbjct: 473 P 473
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling
protein; HET: NAG BMA; 2.99A {Homo sapiens}
Length = 528
Score = 188 bits (477), Expect = 1e-50
Identities = 104/408 (25%), Positives = 169/408 (41%), Gaps = 47/408 (11%)
Query: 385 LILCVS---GTCTVRSLQNISDIV-----QNVREAVVANNGNASTFAFIAPGPPKPPSTH 436
L++C S G C R L + ++ + V AN+ ST +A G P
Sbjct: 92 LVVCGSVHQGVCEQRRLGQLEQLLLRPERPGDTQYVAANDPAVSTVGLVAQGLAGEP--- 148
Query: 437 VMYVGVTFTGNSPYRSEVPSIASRSL---DPERMFQIADSAVTTGTRMFVNNLARERYII 493
+++VG +T +P I +R+L DP+ F ++A + Y
Sbjct: 149 LLFVGRGYTSRG-VGGGIPPITTRALWPPDPQAAFSYEETA-------KLAVGRLSEYSH 200
Query: 494 NYVYGFSSEGFSYFLTTQLKSNIGTSFYISKLVRICHDDSNYYSYTEIPITCNSNSGKQY 553
++V F+ +YFL + + + + + R+C D +YYSY E+P+ C G +Y
Sbjct: 201 HFVSAFARGASAYFLFLRRDLQAQSRAFRAYVSRVCLRDQHYYSYVELPLAC---EGGRY 257
Query: 554 NLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEG----SNRPKNSSALCIYP 609
L+QA V +VLFA F+ + P + +SALC +P
Sbjct: 258 GLIQAAAVATSREVA--------HGEVLFAAFSSAAPPTVGRPPSAAAGASGASALCAFP 309
Query: 610 LASIRRKFMQNIKTCFSGQGN------RGLDFISPAHPCVQTKLQTIGEDFCGLD-VNTP 662
L + R + C++ +G C Q + T+ CG D +P
Sbjct: 310 LDEVDRLANRTRDACYTREGRAEDGTEVAYIEYDVNSDCAQLPVDTLDAYPCGSDHTPSP 369
Query: 663 LGGENPIEAVAVLNFS-VRCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSSIAIEYGDV 721
+ P+EA +L + ++ TAVA T +T+ F+G G L +V + S Y
Sbjct: 370 MASRVPLEATPILEWPGIQLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQ 429
Query: 722 KVDENMTVNADLHLDSKAMHLYVMTERRVSKVKVQECKVYKTC--CLG 767
+ + V+ DL D HLYVMT+ + KV V C + C CL
Sbjct: 430 SIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKVPVASCAQHLDCASCLA 477
Score = 70.1 bits (170), Expect = 5e-12
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 1075 SESNTQHSFTELVQTLTCWDCLNRKDPYCGWCSLDNKCSLRSDCQDAAKDPLSWIS--YK 1132
+ + Q L C CL +DPYCGWC L +CS RS+C P W+
Sbjct: 455 QSTLLKVPVASCAQHLDCASCLAHRDPYCGWCVLLGRCSRRSECSRGQ-GPEQWLWSFQP 513
Query: 1133 SGRCTTITSVTPNQ 1146
C T +
Sbjct: 514 ELGCLQGTKHHHHH 527
Score = 44.7 bits (104), Expect = 4e-04
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 854 NPDNVHVNIYRCRDLANNCGLCLALPEKYGCGWCQSSKRCEIFEQCDKGLGTWLNRNHTC 913
+ V + C +C CLA + Y CGWC RC +C +G
Sbjct: 455 QSTLLKVPVASC-AQHLDCASCLAHRDPY-CGWCVLLGRCSRRSECSRG---------QG 503
Query: 914 PNPEITSFQPKSGPWEG 930
P + SFQP+ G +G
Sbjct: 504 PEQWLWSFQPELGCLQG 520
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN
consortium, SGC, glycoprotein, membrane, phosphorylation,
R secreted, transmembrane; 2.00A {Homo sapiens} PDB:
2rex_A* 2jph_A
Length = 138
Score = 134 bits (338), Expect = 2e-36
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 28/131 (21%)
Query: 1835 ITAEARYSLSEE-KLIRHAIDFKPMTVYV---------------------------KEKS 1866
+ +S E + ++++P+T+ KEK
Sbjct: 1 MHHHHHHSSGRENLYFQGDVEYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKM 60
Query: 1867 LDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDG 1926
LD +Y+ P + RP LDVEWR+G G LIL D D T++V+G W+++NTL HY+VPDG
Sbjct: 61 LDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120
Query: 1927 GCLNLVSKQYN 1937
+ LV
Sbjct: 121 ATVALVPCLTK 131
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC,
signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Length = 117
Score = 131 bits (332), Expect = 8e-36
Identities = 48/115 (41%), Positives = 65/115 (56%), Gaps = 24/115 (20%)
Query: 1846 EKLIRHAIDFKPMTVYV------------------------KEKSLDTIYRATPYSLRPR 1881
+KLIR ID+K + + KEK LD I++ P S RP+
Sbjct: 2 DKLIRQQIDYKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPK 61
Query: 1882 KDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVSKQY 1936
D+D+EWR G+ R+IL D D TTK+E +WK++NTL HY+VPDG + LVSKQ
Sbjct: 62 AADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDGSVVALVSKQV 116
>3oky_B Putative uncharacterized protein; transmembrane, ligand,
SEMA-domain, cell-CELL signalling, SI protein; HET: NAG;
2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Length = 565
Score = 144 bits (363), Expect = 1e-35
Identities = 62/453 (13%), Positives = 128/453 (28%), Gaps = 101/453 (22%)
Query: 378 IYHTNPILILCVS----GTCTVRSLQNISDIVQNVREAVVANNGNASTFAFIAPGPPKPP 433
+ + L +C + +C + + P K
Sbjct: 110 LKKNDDTLFVCGTNAFNPSCRNYRVDTLETFGDEFSGMA------------RCPYDAKHA 157
Query: 434 STHVMYVGVTFTGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVNNLARERYII 493
+ + G ++ + ++ RSL + ++
Sbjct: 158 NIALFADGKLYSATVTDFLAIDAVIYRSLGDSPTLRTVKH------------DSKWLKEP 205
Query: 494 NYVYGFSSEGFSYFLTTQLKSNIGT--SFYISKLVRICHDDS---------NYYSYTEIP 542
+V + YF ++ T ++ ++C +D + S+ +
Sbjct: 206 YFVQAVDYGDYIYFFFREIAVEYNTMGKVVFPRVAQVCKNDMGGSQRVLEKQWTSFLKAR 265
Query: 543 ITCN--SNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRPK 600
+ C+ +S +N++QA + DV+ A F+
Sbjct: 266 LNCSVPGDSHFYFNILQAVTDVIRING----------RDVVLATFSTPYNSIPG------ 309
Query: 601 NSSALCIYPLASIRRKFMQNIKTCFSGQG--------------------NRGLDFISPAH 640
SA+C Y + I F K S + L+ + ++
Sbjct: 310 --SAVCAYDMLDIANVFTGRFKEQKSPDSTWTPVPDERVPKPRPGCCAGSSSLEKYATSN 367
Query: 641 PCVQTKLQTIGEDFCGLDVNTPLGGEN-PIEAVAVLNFSVRCTAVAATSTGDYTVVFIGT 699
L I + + + + + AA ++TVVF+G+
Sbjct: 368 EFPDDTLNFIKTHPLMDEAVPSIINRPWFLRTMVRYRLTKIAVDNAAGPYQNHTVVFLGS 427
Query: 700 DTGHLKKVVVETSSIAIEYGDVKVDENMTVN--------------ADLHLDSKAMHLYVM 745
+ G + K + S G + ++E N + LD + LYV
Sbjct: 428 EKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASGSLYVA 487
Query: 746 TERRVSKVKVQECKVYKTCCLGFQPTIAACVAS 778
V KV + C+ + C C+AS
Sbjct: 488 FSTCVIKVPLGRCERHGKCK-------KTCIAS 513
Score = 50.1 bits (118), Expect = 8e-06
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 1091 TCWDCLNRKDPYCGWCSLDNKCSLRSDCQDAA 1122
C+ +DPYCGW C+ S
Sbjct: 506 CKKTCIASRDPYCGWVRESGSCAHLSPLSRLT 537
Score = 38.2 bits (87), Expect = 0.037
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 858 VHVNIYRCRDLANNCGLCLALPEKYGCGWCQSSKRCEIFEQCDKG 902
+ V + RC C+A + Y CGW + S C +
Sbjct: 493 IKVPLGRCERHGKCKKTCIASRDPY-CGWVRESGSCAHLSPLSRL 536
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 138 bits (349), Expect = 1e-33
Identities = 66/412 (16%), Positives = 136/412 (33%), Gaps = 68/412 (16%)
Query: 378 IYHTNPILILCVS----GTCTVRSLQNISDIVQNVREAVVANNGNASTFAFIAPGPPKPP 433
+ + L+ C + +C + + + AP P
Sbjct: 89 LERRSEGLLACGTNARHPSCWNLVNGTVVPLGEMR---------------GYAPFSPDEN 133
Query: 434 STHVMYVGVTFTG--NSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVN--NLARE 489
S + ++ Y ++P + E + S F+ + ++
Sbjct: 134 SLVLFEGDEVYSTIRKQEYNGKIPRFRRIRGESE----LYTSDTVMQNPQFIKATIVHQD 189
Query: 490 RYIINYVYGFSSEGFSYFLTTQLKSNIGTSFYISKLVRICHDDS---------NYYSYTE 540
+ + +Y F E N +S++ ++C D + ++ +
Sbjct: 190 QAYDDKIYYFFRE-------DNPDKNPEAPLNVSRVAQLCRGDQGGESSLSVSKWNTFLK 242
Query: 541 IPITCN-SNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRP 599
+ C+ + + K +N +Q F L D +D ++ VF+ P
Sbjct: 243 AMLVCSDAATNKNFNRLQDVF-------LLPDPSGQWRDTRVYGVFS-----------NP 284
Query: 600 KNSSALCIYPLASIRRKFMQNIKTCFSGQGN--RGLDFISPAHPCVQTKLQTIGEDFCGL 657
N SA+C+Y L I + F + + R + P Q
Sbjct: 285 WNYSAVCVYSLGDIDKVFRTSSLKGYHSSLPNPRPGKCLPDQQPIPTETFQVADRHPEVA 344
Query: 658 DVNTPLGGENPIEAVAVLNFS-VRCTAVAATSTGDYTVVFIGTDTGHLKKVVV---ETSS 713
P+G + ++ V + A+ + V+++ TD G + KVV + S
Sbjct: 345 QRVEPMGPLKTPLFHSKYHYQKVAVHRMQASHGETFHVLYLTTDRGTIHKVVEPGEQEHS 404
Query: 714 IAIEYGDVKVDENMTVNADLHLDSKAMHLYVMTERRVSKVKVQECKVYKTCC 765
A +++ + LD++ LYV ++ VS+V + C+VY C
Sbjct: 405 FAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVPLDLCEVYGGGC 456
Score = 33.1 bits (74), Expect = 1.4
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 1091 TCWDCLNRKDPYCGWCSLDNKC 1112
C CL +DPYCGW
Sbjct: 455 GCHGCLMSRDPYCGWDQGRCIS 476
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A
{Mus musculus} SCOP: b.69.12.1
Length = 495
Score = 134 bits (337), Expect = 8e-33
Identities = 62/426 (14%), Positives = 132/426 (30%), Gaps = 73/426 (17%)
Query: 380 HTNPILILCVS----GTCTVRSLQNISDIVQNVREAVVANNGNASTFAFIAPGPPKPPST 435
+ L C + CT + + + + NG +P PK +
Sbjct: 99 YNQTHLYACGTGAFHPICTYIEVGHHPEDNIFKLQDSHFENGRG-----KSPYDPKLLTA 153
Query: 436 HVMYVGVTFTGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTR-MFVNNLARERYII- 493
++ G ++G + R+L + F++
Sbjct: 154 SLLIDGELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPESDNP 213
Query: 494 --NYVYGFSSEGFSYFLTTQLKSNIGTSFYISKLVRICHDD--------SNYYSYTEIPI 543
+ VY F E + +++ +IC +D + + ++ + +
Sbjct: 214 EDDKVYFFFRE-------NAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARL 266
Query: 544 TC----NSNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRP 599
C + ++ +Q F+ ++ +++ VF S
Sbjct: 267 ICSVPGPNGIDTHFDELQDVFLMNSKDP---------KNPIVYGVFTTSSNIFKG----- 312
Query: 600 KNSSALCIYPLASIRRKFMQNIKTCFSGQGN----RGLDFISPAHPCVQTKLQTIG---- 651
SA+C+Y ++ +RR F+ +G C
Sbjct: 313 ---SAVCMYSMSDVRRVFLGPYAHRDGPNYQWVPYQGRVPYPRPGTCPSKTFGGFDSTKD 369
Query: 652 --EDFCGLDVNTPLGGEN--PIEAVAVL---NFSVRCTAVAATST----GDYTVVFIGTD 700
+D + P PI ++ + + + T + G Y V+FIGTD
Sbjct: 370 LPDDVITFARSHPAMYNPVFPINNRPIMIKTDVNYQFTQIVVDRVDAEDGQYDVMFIGTD 429
Query: 701 TGHLKKVVVETSSIAIEYGDVKVDENMTVNA-----DLHLDSKAMHLYVMTERRVSKVKV 755
G + KVV + +V ++E + L +K LY+ + V+++ +
Sbjct: 430 VGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQLPL 489
Query: 756 QECKVY 761
C +Y
Sbjct: 490 HRCDIY 495
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC;
2.30A {Homo sapiens}
Length = 126
Score = 120 bits (303), Expect = 9e-32
Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 26/126 (20%)
Query: 1835 ITAEARYSLSEEKLIRHAIDFKPMTVY--------------------------VKEKSLD 1868
+ +S E L + KEK
Sbjct: 1 MHHHHHHSSGRENLYFQGTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQ 60
Query: 1869 TIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDGGC 1928
+ +++ +E + G + +L S+ +E K+NT+ HY + +G
Sbjct: 61 AFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNGST 120
Query: 1929 LNLVSK 1934
+ + K
Sbjct: 121 IKVFKK 126
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics
consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Length = 111
Score = 110 bits (277), Expect = 1e-28
Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 24/109 (22%)
Query: 1848 LIRHAIDFKPMTVYV-----------------------KEKSLDTIYRATPYSLRPRKDD 1884
L+ +++ P+TV V KEK +D +YR P S PR D
Sbjct: 2 LLGDDVEYAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDS 61
Query: 1885 LDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHYRVPDGGCLNLVS 1933
+ +EWR G+T + IL D D T++ EG WK+VNTL HY V DG L L
Sbjct: 62 VVLEWRPGSTAQ-ILSDLDLTSQREGRWKRVNTLMHYNVRDGATLILSK 109
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane,
transmembrane, receptor, alternative splicing, cell
membrane, glycoprotein, polymorphism; 2.00A {Homo
sapiens}
Length = 127
Score = 110 bits (275), Expect = 5e-28
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 1862 VKEKSLDTIYRATPYSLRPRKDDLDVEWRTGNTGRLILYDYDSTTKVEGEWKKVNTLNHY 1921
VKEK L+ + PYS PR +D+D+EW +T IL D D T+ VE KK+NTL HY
Sbjct: 32 VKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHY 91
Query: 1922 RVPDGGCLNLVSK----QYNLSILSEKTDKY 1948
++P+G L + + T+KY
Sbjct: 92 KIPEGASLAMSLIDKKDNTLGRVKDLDTEKY 122
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 117 bits (293), Expect = 1e-26
Identities = 67/425 (15%), Positives = 122/425 (28%), Gaps = 71/425 (16%)
Query: 385 LILC----VSGTCTVRSLQNISDIVQNVREAVVANNGNASTFAFIAPGPPKPPSTHVMYV 440
L +C C +L + + +N P P T VM
Sbjct: 102 LYVCGTNAFQPACDHLNLTSFKFLGKNEDGKGRC------------PFDPAHSYTSVMVD 149
Query: 441 GVTFTGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVNNLARERYIINYVYGFS 500
G ++G S I SR+ + FV R + G
Sbjct: 150 GELYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPS-FVF-ADVIRKSPDSPDGED 207
Query: 501 SEGFSYFLTTQLKSNIGTSFYISKLVRICHDD--------SNYYSYTEIPITCN-SNSGK 551
+ +F ++ I ++ R+C D + S+ + + C+ +SG
Sbjct: 208 DRVYFFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDSGL 267
Query: 552 QYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRPKNSSALCIYPLA 611
+N+++ FV + + V +A+F G SA+C Y L+
Sbjct: 268 VFNVLRDVFVLRSPGL---------KVPVFYALFTPQLNNVG--------LSAVCAYNLS 310
Query: 612 SIRRKFMQNIKTCFSGQGNR------------------------GLDFISPAHPCVQTKL 647
+ F + + + L
Sbjct: 311 TAEEVFSHGKYMQSTTVEQSHTKWVRYNGPVPKPRPGACIDSEARAANYTSSLNLPDKTL 370
Query: 648 QTIGEDFCGLDVNTPLGGENPIEAVAVLNFSVRCTAVAATSTGDYTVVFIGTDTGHLKKV 707
Q + + D TP+ + V + A Y V+F+ TD G L K
Sbjct: 371 QFVKDHPLMDDSVTPIDNRPRLIKKDVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKA 430
Query: 708 VVETSSIAIEYGDVKVDENMTVNADLHLDSKAMH-LYVMTERRVSKVKVQECKVYKTC-- 764
+ ++ I + V L K +Y + V + + C + TC
Sbjct: 431 ISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQAPLAFCGKHGTCED 490
Query: 765 CLGFQ 769
C+ +
Sbjct: 491 CVLAR 495
Score = 42.4 bits (98), Expect = 0.002
Identities = 16/76 (21%), Positives = 27/76 (35%)
Query: 1091 TCWDCLNRKDPYCGWCSLDNKCSLRSDCQDAAKDPLSWISYKSGRCTTITSVTPNQLQRT 1150
TC DC+ +DPYC W C + ++ + +S + C + + Q
Sbjct: 487 TCEDCVLARDPYCAWSPPTATCVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFK 546
Query: 1151 TARTLDLAIENLPKLP 1166
T +L L
Sbjct: 547 HGGTAELKCSQKSNLA 562
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein,
immunogloblin-like fold, beta- sandwich,
endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus
norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Length = 99
Score = 95.8 bits (238), Expect = 2e-23
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 911 HTCPNPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTT 970
+ P +T P G T VTI G NLG D+ G+++ G C + +
Sbjct: 3 RSRQPPLVTGISPNEGI--PWTKVTIRGENLGTGPTDLI-GLTICGHNCLLTAE-WMSAS 58
Query: 971 QIVCQVDGPGTRGSREGPVIVKIE-DFRGQSKDNYQFVDPVI 1011
+IVC+V G G +IV + RG S +++ + P
Sbjct: 59 KIVCRV-GQAKNDK--GDIIVTTKSGGRGTSTVSFKLLKPEK 97
Score = 40.7 bits (95), Expect = 4e-04
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 14/89 (15%)
Query: 1009 PVIKSIQPLQGPRSGGTILHISGSHM--NAGSRIEAFIDDLPCRITS--VEPEMAHCVTS 1064
P++ I P +G T + I G ++ I I C +T+ + C
Sbjct: 8 PLVTGISPNEGI--PWTKVTIRGENLGTGPTDLIGLTICGHNCLLTAEWMSASKIVCRVG 65
Query: 1065 ASDRQ--------RNGKLSESNTQHSFTE 1085
+ ++G S +
Sbjct: 66 QAKNDKGDIIVTTKSGGRGTSTVSFKLLK 94
>3nvx_A Protein A39; beta-propeller, viral protein; HET: NAG; 2.00A
{Vaccinia virus} PDB: 3nvn_A*
Length = 383
Score = 81.7 bits (201), Expect = 5e-16
Identities = 40/332 (12%), Positives = 89/332 (26%), Gaps = 60/332 (18%)
Query: 425 IAPGPPKPPSTHVMYVGVTFTGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVN 484
AP + V N + + AD+
Sbjct: 91 YAPYQNSKVTIISYNECVLSDINI-SKEGIKRWRRFDGPCGYDLYTADNV---------- 139
Query: 485 NLARERYIINYVYGFSSEGFSYFLTTQLKSNIGTSFYISKLVRICHDD---------SNY 535
+ ++ +V + Y L T I + ++C +D +
Sbjct: 140 -IPKDGLRGAFVDKDGTYDKVYILFTD-TIGSKRIVKIPYIAQMCLNDEGGPSSLSSHRW 197
Query: 536 YSYTEIPITCNSNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEG 595
++ ++ + C G+ Y + K D +L+ F
Sbjct: 198 STFLKVELEC-DIDGRSYRQIIHSRTIKTD-----------NDTILYVFF---------- 235
Query: 596 SNRPKNSSALCIYPLASIRRKFMQNIKTCFSGQGNRGLDFISPAHPCVQTKLQTIGEDFC 655
+ P + SALC Y + +I++ F + ++ Q SPA + +
Sbjct: 236 -DSPYSKSALCTYSMNTIKQSFSTSKLEGYTKQ------LPSPAPGICLPAGKVVSHTTF 288
Query: 656 GLDVNTPLGGE--NPIEAVAVLNFSVRCTAVA----ATSTGDYTVVFIGTDTGHLKKVVV 709
+ + + P+ + +Y + FI ++ +
Sbjct: 289 EVIEKYNVLDDIIKPLSNQPIFEGPSGVKWFDIKEKENEHREYRIYFIKENSIYSFDTKS 348
Query: 710 ETSSIAIEYG---DVKVDENMTVNADLHLDSK 738
+ + + V V AD+ +
Sbjct: 349 KQTRSSQVDARLFSVMVTSKPLFIADIGIGVG 380
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 77.8 bits (191), Expect = 4e-14
Identities = 93/580 (16%), Positives = 173/580 (29%), Gaps = 204/580 (35%)
Query: 504 FSYFLTTQL-KSNIGTSFYISKLVRICHDDSNYYSYTEIPITCNSNSGKQYNLVQAGFVG 562
F ++++ + S +G + L + ++ Y +I + + A +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLC-LTEFENCYLEGNDI------------HALAAKLLQ 110
Query: 563 KPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRP---KNSSALCIYPLASIRR---K 616
+ D + +++ + RP K++SAL ++ +
Sbjct: 111 EN------DTTLVKTKELIKNYITARIM-----AKRPFDKKSNSAL----FRAVGEGNAQ 155
Query: 617 FMQNIKTCFSGQGN--------RGL---------DFISPAHPCVQTKLQTIGEDFC---- 655
+ F GQGN R L D I + + L D
Sbjct: 156 LV----AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE-LIRTTLDAEKVFT 210
Query: 656 -GLDVNTPLGGENP------------------IEAVAVLNFSVRCTAVAATSTGDYTVVF 696
GL++ L ENP I + + ++ V + + G+
Sbjct: 211 QGLNILEWL--ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK-LLGFTPGELRSYL 267
Query: 697 IGTDTGHLKKVVVETSSIAIEYGDVKVDENMTVNADLHLDSKAMHL--YVMTERRVSKVK 754
G TGH + +V +++AI D E+ V+ KA+ + ++ V+
Sbjct: 268 KGA-TGHSQGLV---TAVAIAETD--SWESFFVSVR-----KAITVLFFI-------GVR 309
Query: 755 VQECKVYKTCCLGFQPTI-AACVASNSKKA---VNVKVHIVGQFIAQTRFVCQFNIEGRV 810
E P+I + +N +++ Q ++ V
Sbjct: 310 CYEA----YPNTSLPPSILEDSLENNEGVPSPMLSIS----NLTQEQ--------VQDYV 353
Query: 811 TSVNAQL-LGDVIYCDPMEFTYTSRLSNINA--SFAVIWGGSKPLDNPDNVHVNIYRCRD 867
N+ L G + +S +N + V+ G P +
Sbjct: 354 NKTNSHLPAGKQVE-----------ISLVNGAKNL-VVSG------PP----------QS 385
Query: 868 LANNCGLCLALPEKYGC--GWCQS----SKR----------------CEIFEQCDKGLGT 905
L GL L L K G QS S+R + +
Sbjct: 386 L---YGLNLTL-RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK 441
Query: 906 WLNRNHTCPNPE---ITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPY 962
L +N+ N + I + T +G +L I + V I P
Sbjct: 442 DLVKNNVSFNAKDIQIPVYD------------TFDGSDLRVLSGSISERI-VDCIIRLPV 488
Query: 963 ---ESLYNRTTQIVCQVD-GPGTRGSREGPVIVKIEDFRG 998
+ + T I +D GPG S G + + +D G
Sbjct: 489 KWETTTQFKATHI---LDFGPG-GASGLGVLTHRNKDGTG 524
Score = 53.9 bits (129), Expect = 7e-07
Identities = 80/510 (15%), Positives = 147/510 (28%), Gaps = 159/510 (31%)
Query: 766 LGFQPTIAACV-ASNSKKAVNVKVHIVGQFIAQTRFVCQFNIEGRVTSVNAQLLGD---- 820
LG+ +++ V S + V + +F + ++ +I ++ A+LL +
Sbjct: 65 LGY---VSSLVEPSKVGQFDQVLNLCLTEF--ENCYLEGNDIH----ALAAKLLQENDTT 115
Query: 821 ------VIYC---------DPMEFTYTSRLSNI----NASFAVIWGG----SKPLDNPDN 857
+I P + S L NA I+GG + +
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 858 VHVNIYRC--RDLANNCGLCLA-LPEKYGCGWCQSSKRCEIFEQ-CDKGLGTWLNRNHTC 913
++ Y DL L+ L + ++F Q + + WL
Sbjct: 176 LY-QTYHVLVGDLIKFSAETLSELIR-------TTLDAEKVFTQGLN--ILEWLENPSNT 225
Query: 914 PNPEITSFQPKSGPWEGGT---NVTINGINLGKT---FKDIYGGVSV--AGI-------T 958
P+ + P S P G + + LG T + G + G+
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 959 CQPYESLYNRTTQIV---------CQVDGPGTRGSREGPVIVKIEDFRGQSKDNYQFV-- 1007
+ES + + + C P T P I++ + +
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP---PSILEDSLENNEGVPSPMLSIS 342
Query: 1008 ----DPVIKSIQ------PLQ---------GPR----SG------GTILHISGSHMNAG- 1037
+ V + P G + SG G L + + +G
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 1038 --SRIEA----------FIDDLPCRITSVEPEMAHC--VTSASDRQRNGKLSESNTQHSF 1083
SRI F LP + S P H + ASD L ++N +
Sbjct: 403 DQSRIPFSERKLKFSNRF---LP--VAS--PF--HSHLLVPASDLINKD-LVKNNVSFNA 452
Query: 1084 TELVQTLTCWDCLNRKDPYCGWCSLDNKCSLRSD-CQDAAKDPLSW-----------ISY 1131
++ + +D + D L S+ + P+ W + +
Sbjct: 453 KDI--QIPVYDTFDGSD----LRVLSG--SISERIVDCIIRLPVKWETTTQFKATHILDF 504
Query: 1132 KSGRCTTITSVTPNQLQRTTAR-----TLD 1156
G + + +T T R TLD
Sbjct: 505 GPGGASGLGVLTHRNKDGTGVRVIVAGTLD 534
Score = 52.4 bits (125), Expect = 2e-06
Identities = 77/559 (13%), Positives = 159/559 (28%), Gaps = 199/559 (35%)
Query: 1423 PPHFHVVYQDKKFCQLCEVNEVTYSYDLYRTTITGALDKMMKYRASS--HLAGSY-GF-- 1477
P + QL E ++ L T A D ++ L G + G+
Sbjct: 23 PTASFFIAS-----QLQE----QFNKILPEPTEGFAAD----DEPTTPAELVGKFLGYVS 69
Query: 1478 ---------EMDNVTKE-IKYYKSDYLTINGQHLDRASQESDVIVKIGTGFCNVTSVSRL 1527
+ D V + +++ YL N H A + T + +
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN----DTTLVKTKELIKN 125
Query: 1528 QLTCRPPAEQPPNKNDDDE--STAELPDVTVIV-----GNNLKFYIGKLS--YSPPAALN 1578
+T R A++P +K + + ++ GN Y +L Y L
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD-YFEELRDLYQTYHVLV 184
Query: 1579 SPLTKTA--IVGKLSYSPPAA-------------LNSP--------------------LT 1603
L K + + +L + A L +P +
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Query: 1604 KTAMY------GGI----------AIITILFLIFIAFLIAYRRKSTENTRVLKNMQEQMD 1647
+ A Y G + A IA ++ ++++ +
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA---ETDSWESFFVSVRKAIT 301
Query: 1648 ILELRVAAECKEAFAELQTEITDLTGDLTSG-GIPFLDYRTYAMMILFPNSEHHAVLQFE 1706
+L + C EA+ + L L + G+P + M+ ++
Sbjct: 302 VL-FFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-----SP--ML--------SI---- 341
Query: 1707 RPELLHKEKGLRLFGQLIQNKTFLLLFIRTLESNRYFSMRDRVNVASLI-----MV---- 1757
L + + ++ ++N + +V + SL+ +V
Sbjct: 342 --------SNL--------TQEQVQDYVN--KTNSHLPAGKQVEI-SLVNGAKNLVVSGP 382
Query: 1758 --TLQNILKTLLAELIEKCMEGKS------------------------HPKLLLRRTESV 1791
+L L L + K G H LL+ ++ +
Sbjct: 383 PQSLYG-LNLTLRKA--KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 1792 AEKMLSSWFTF----L---LYKF-----LRECAGEPLYLLFRAMKQQVDKGPVD-AITAE 1838
+ ++ + +F + +Y LR +G + + + + PV T +
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS----ISERIVDCIIRLPVKWETTTQ 495
Query: 1839 ARYSLSEEKLIRHAIDFKP 1857
+ + H +DF P
Sbjct: 496 FKAT--------HILDFGP 506
Score = 52.0 bits (124), Expect = 3e-06
Identities = 86/526 (16%), Positives = 145/526 (27%), Gaps = 197/526 (37%)
Query: 232 LTINGQHLDRASQESDVIVKIGTGFCNVTSVSRLQ---LTCRPPAEQPPNKNDDDESTAE 288
LT++ H S E ++V + F S+LQ P + +D+ + AE
Sbjct: 9 LTLS--H---GSLEHVLLVPTASFF----IASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 289 LPDVTVIVGNNLKFYIGKLSYSPPAALNSPLTKTAMYGGIAIITILFLIFIAFLIAYRRK 348
L VG KF L Y ++L P +L L F
Sbjct: 60 L------VG---KF----LGYV--SSLVEPSKVGQF------DQVLNLCLTEF------- 91
Query: 349 STENTRVLKNMQEQMDILELRVAAECKAPIYHTNPILILCVSGTCTVRSLQNISDIVQNV 408
L+ DI H L +D
Sbjct: 92 ---ENCYLEG----NDI--------------HA------------LAAKLLQENDTTLVK 118
Query: 409 REAVVANNGNASTFAFIAPGPPKPPS----------THVMYVGVTFTG---NSPYRSEVP 455
+ ++ N A A P K S ++ + F G Y E+
Sbjct: 119 TKELIKNYITARIMA-KRPFDKKSNSALFRAVGEGNAQLVAI---FGGQGNTDDYFEELR 174
Query: 456 SI--ASRSLDPERMFQIADSAVTTGTRMFVNNLARERYIINYVY--GFSSEGF------- 504
+ L + + + ++ L R V+ G + +
Sbjct: 175 DLYQTYHVL-VGDLIKFSAET--------LSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 505 ---SYFLTTQLKSNIGTSFYISKLVRICHDDSNYYSYTEIPITCNSNSGKQYNLVQAGFV 561
Y L+ + S + ++++ H Y +T GF
Sbjct: 226 PDKDYLLSIPI------SCPLIGVIQLAH----YV------VTAK----------LLGF- 258
Query: 562 GKPG---SDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRPKNSSALCI----------- 607
PG S L G G + ++ AV A +E E S A+ +
Sbjct: 259 -TPGELRSYLKGATGHSQ--GLVTAV-AIAETDSWE-SFFVSVRKAITVLFFIGVRCYEA 313
Query: 608 YPLASIRRKFMQNIKTCFSGQGN-------RGLDFISPAHPCVQTKLQTIGEDFC----- 655
YP S+ ++ + + +G L Q ++Q
Sbjct: 314 YPNTSLPPSILE--DSLENNEGVPSPMLSISNLT---------QEQVQDYVNKTNSHLPA 362
Query: 656 ------GLDVNTP----LGGENPIEAVAVLNFSVRCTAVAATSTGD 691
L VN + G P +++ LN ++R A S D
Sbjct: 363 GKQVEISL-VNGAKNLVVSG--PPQSLYGLNLTLR--KAKAPSGLD 403
Score = 46.6 bits (110), Expect = 1e-04
Identities = 85/613 (13%), Positives = 159/613 (25%), Gaps = 246/613 (40%)
Query: 1013 SIQPLQGPRSGGTI---LHISGSHMNAGSRI-EAFIDDLPCRITSV----EPE------- 1057
S +PL S G++ L + + S++ E F LP EP
Sbjct: 5 STRPLT--LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 1058 --MAHCVTSASDRQRNGKLSESNTQHSFTELVQTLTCW---DCLNRKDPYCGWCSLDNKC 1112
+ + + L E + F +++ L D + +L
Sbjct: 63 KFLGYVSS----------LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH----AL--AA 106
Query: 1113 SLRSDCQDAAKDPLSWI-SYKSGRCTT---ITSVTPNQL----QRTTARTLDLAIENLPK 1164
L + I +Y + R + + L A+ + AI
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV--AI----- 159
Query: 1165 LPGQ-------------------FLCAF-TIAEKTL-----TTEAVKKTNGVGC------ 1193
GQ + + +TL TT +K G
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 1194 ----ITPRTDFLPSIPVGQHNITAKLSVRSSNGPDFVTTKFMFFDCNTYSSC-----TQC 1244
TP D+L SIP+ SC Q
Sbjct: 220 ENPSNTPDKDYLLSIPI---------------------------------SCPLIGVIQL 246
Query: 1245 VSSDFPCDCIKCCQLLGDVIYCDPMEFTLTPRDYPISTPRLPMSGFSHNCGLCLRAREKL 1304
+ + +LLG TP + S+ G ++ +
Sbjct: 247 AH--Y----VVTAKLLG-----------FTPGEL-----------RSYLKGATGHSQGLV 278
Query: 1305 DAAGVSSKYSATARSLDPRVVTILHIS---G--SHMNAAVSLLKHFMMD---------P- 1349
A ++ + + S V + + G + + L +++ P
Sbjct: 279 TAVAIAE--TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 1350 PMSAVTSVSREMAPWRKPLRQKTAGMAKLQYEASVD-CWHRIPEQGMQY------PRM-- 1400
PM +++++++E Q + V+ +P +
Sbjct: 337 PMLSISNLTQE------------------QVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 1401 -----RSRHGWHTYQCGGKNPPVYIKDPPHFHVVYQDK-KFCQLCEVNEVTYSYDLYRTT 1454
+S +G + K P D Q + F + + + + L
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSG--LD--------QSRIPFSE--RKLKFSNRF-L---P 422
Query: 1455 ITGALDKMMKYRA---SSHLAGSY-GFEMDNVTKEIKYYKSD-----YLTINGQHLDRAS 1505
+ + S L + D V + + D Y T +G L R
Sbjct: 423 VA----------SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-RVL 471
Query: 1506 QES------DVIV 1512
S D I+
Sbjct: 472 SGSISERIVDCII 484
Score = 43.5 bits (102), Expect = 0.001
Identities = 45/310 (14%), Positives = 86/310 (27%), Gaps = 139/310 (44%)
Query: 982 RGSREGPV-IVKIEDFRGQSKDN------------YQ-FVDPVIKSIQPLQGPRSGGTIL 1027
R EG +V I F GQ + Y V +IK S T+
Sbjct: 147 RAVGEGNAQLVAI--FGGQGNTDDYFEELRDLYQTYHVLVGDLIK--------FSAETLS 196
Query: 1028 HISGSHMNA------GSRIEAFIDD----------------LP-------------CRIT 1052
+ + ++A G I ++++ P ++
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 1053 SVEP-EMAHCVTSASDRQRNGK-------LSESNTQHSFTELVQTLTCWDCLNRKDPYCG 1104
P E+ + A+ + ++E+++ SF V+
Sbjct: 257 GFTPGELRSYLKGATGH---SQGLVTAVAIAETDSWESFFVSVRKAITV----------- 302
Query: 1105 WCSLDNKCSLRSDCQDAAKDPLSWISYKSGRCTTITSVTPNQLQRTTARTLD-----LAI 1159
L +I + TS+ P+ L+ + L+I
Sbjct: 303 ---------------------LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 1160 ENLPKLPGQFLCAFTIAEKTLTTEAVKKTNGVGCITPRTDFLPSIPVGQHNITAKLSVRS 1219
NL + + + + V KTN +P G+ ++S+
Sbjct: 342 SNLTQ-------------EQV-QDYVNKTNS------------HLPAGKQ---VEISLV- 371
Query: 1220 SNGPD-FVTT 1228
NG V +
Sbjct: 372 -NGAKNLVVS 380
Score = 42.3 bits (99), Expect = 0.002
Identities = 40/191 (20%), Positives = 58/191 (30%), Gaps = 67/191 (35%)
Query: 1690 M-MILFPNSEHHAVLQ-FERPELLHKEK-GLRLFGQLIQN-KTFLLLF-------IRTLE 1738
M M L+ S+ A + R + K+ G + +I N + F IR
Sbjct: 1631 MGMDLYKTSK--AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR--- 1685
Query: 1739 SNRYFSMRDRVNVASLIMVTLQNILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSS 1798
Y +M V + + I K + K LL T+
Sbjct: 1686 -ENYSAMIFETIVDG--KLKTEKIFKEINEHSTSYTFR---SEKGLLSATQ--------- 1730
Query: 1799 WFT----FLLYKFLRECAGEPLYLLFRAMKQQVDKG--PVDAITA-----EARYS----- 1842
FT L+ E A F +K KG P DA A E Y+
Sbjct: 1731 -FTQPALTLM-----EKA------AFEDLK---SKGLIPADATFAGHSLGE--YAALASL 1773
Query: 1843 ---LSEEKLIR 1850
+S E L+
Sbjct: 1774 ADVMSIESLVE 1784
Score = 41.6 bits (97), Expect = 0.005
Identities = 90/606 (14%), Positives = 172/606 (28%), Gaps = 210/606 (34%)
Query: 28 GTI---LHISGSHMNAGSRI-EAFIDDLPCRITSV----EPE---------MAHCVTSAS 70
G++ L + + S++ E F LP EP + + V+S
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY-VSSLV 72
Query: 71 DRQRNG------KLSMK-FDKGTRFFDG----SL---YEYVEDPTIDSVDSGIQS----- 111
+ + G L + F+ + +G +L D T+ I++
Sbjct: 73 EPSKVGQFDQVLNLCLTEFE--NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 112 -GQGLKYPKGFP--------AGGTRINVV----GKNLLYIKD-PHIYVVYKDKKFVNSCE 157
+ K G ++ + G Y ++ +Y Y V
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV--LVGD-- 186
Query: 158 VMSNNYMICTAPTITGALDKIDEEHPEQLEYGFEMDNVTS-VRNLSSKLNSPYFLFPNPI 216
+I + L + + + G N+ + N S+ + Y L PI
Sbjct: 187 ------LIKFSAETLSELIRTTLDAEKVFTQGL---NILEWLENPSNTPDKDYLLSI-PI 236
Query: 217 YEPFSE--EIKYYKSDYLTIN------GQHLDRAS----QESDVIVKI-----GTG---F 256
P ++ +Y +T G+ ++ + + F
Sbjct: 237 SCPLIGVIQLAHY---VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 257 CNVTSV--------SRLQLTCRPPAEQPPNKNDDDESTAE-----------LPDVTV--- 294
+V R P PP+ +D E L V
Sbjct: 294 VSVRKAITVLFFIGVRCYEA-YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 295 IVGNNLKF------YI----GKLSY---SPPAAL---NSPLTKTAMYGGI---------- 328
+ N I G + PP +L N L K G+
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 329 -AIITILFL-IFIAFLIAYRRKSTENTRVLKNMQEQM--DILELRV---AAECKAPIYHT 381
+ FL + F ++ +L + + D+++ V A + + P+Y T
Sbjct: 413 KLKFSNRFLPVASPF----------HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 382 NPILILCVSGTCTVRSLQNISDIVQNVREAVVANNGN--ASTFAFIAPGPPKPPSTHVMY 439
G+ +R L I + + + ++ +T + +TH+
Sbjct: 463 F-------DGS-DLRVLS--GSISERIVDCIIRLPVKWETTT---------QFKATHI-- 501
Query: 440 VGVTF-TGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFV-----NNLARERYII 493
+ F G + S + + R+ D TG R+ V N +
Sbjct: 502 --LDFGPGGA---SGLGVLTHRNKD------------GTGVRVIVAGTLDINPDDD---- 540
Query: 494 NYVYGF 499
YGF
Sbjct: 541 ---YGF 543
Score = 39.6 bits (92), Expect = 0.018
Identities = 29/224 (12%), Positives = 65/224 (29%), Gaps = 62/224 (27%)
Query: 1996 SEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPE 2055
++ Y L T V DL + T L + +F G+ +
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF--------TQGL-N-- 214
Query: 2056 VVHTWKSNSLPLRFWVNLIKNPNFVFDIHKSNIVDSC-----LSVVAQT--FMDSCSTSD 2108
+ W ++NP+ + + + S L V Q ++ +
Sbjct: 215 -ILEW-------------LENPS---NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 2109 HRLG--KDSPSSKLLYAKDIPA------YKEWVERYYSDIKSM------------QAISD 2148
G + +++ + W E ++ ++ +A +
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSW-ESFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 2149 QDMNAMLAEESRLHNSEFST------NCALYELYTYASKYNEQL 2186
+ + E+S +N + N ++ Y +K N L
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Score = 38.5 bits (89), Expect = 0.039
Identities = 26/190 (13%), Positives = 60/190 (31%), Gaps = 67/190 (35%)
Query: 2016 DLFETIFSTAHRG--------SALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPL 2067
+ F I G + L K++ ++ + + V L
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFL-GYVSSLVEPSKVGQFDQV---------L 84
Query: 2068 RFWVNLIKNPNFVF--DIHKSNIVDSCLSVVAQTFMDSCSTSDHRLGKDSPSSKLLYAKD 2125
+ +N ++ DIH ++ A+ L +++ ++
Sbjct: 85 NLCLTEFEN-CYLEGNDIH---------ALAAK------------LLQENDTT------- 115
Query: 2126 IPAYKEWVERYY-SDIKSMQAISDQDMNAML----AEESRLH-------NSE--FSTNCA 2171
+ KE ++ Y + I + + + +A+ ++L N++ F
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE--- 172
Query: 2172 LYELY-TYAS 2180
L +LY TY
Sbjct: 173 LRDLYQTYHV 182
Score = 37.3 bits (86), Expect = 0.088
Identities = 46/266 (17%), Positives = 73/266 (27%), Gaps = 111/266 (41%)
Query: 1374 GMAKLQYEASV---DCWHRIPEQGMQYPRMRSRHGWHTYQCGGKNPP-VYIKDPPHF--- 1426
GM Y+ S D W+R + +G+ NP + I HF
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNH------FKDTYGFSILDIVINNPVNLTI----HFGGE 1679
Query: 1427 -----HVVYQDKKFCQLC-----------EVNEVTYSY-------DLYRTTIT------- 1456
Y F + E+NE + SY L T T
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 1457 -GALDKMMK------------------YRASSHLAGSYGFE------------MDNVTKE 1485
A + +K Y A + LA E M
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
Query: 1486 IKYYKSDY--LTIN-GQHLDRASQES--DVIVKIG--TG-FCNVTSVSRLQLTCRPPAEQ 1537
+ +S+Y + IN G+ SQE+ V+ ++G TG +
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV-----------------E 1842
Query: 1538 PPNKNDDDESTAELPDVTVIVGNNLK 1563
N N + + + +L+
Sbjct: 1843 IVNYN--------VENQQYVAAGDLR 1860
Score = 36.6 bits (84), Expect = 0.15
Identities = 44/249 (17%), Positives = 70/249 (28%), Gaps = 113/249 (45%)
Query: 1681 PF-LDYRTYAMMILFPNSEHHAVLQ----F--------------ERP----ELLHKEKGL 1717
P L + + ++L P + Q F + P EL+ K
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK---- 63
Query: 1718 RLFGQLIQNKTFLLLFIRTLESNRYFSMRDRVNVASLIMVTLQNILKTLLAELIEKCMEG 1777
FL ++ +L D+V L L E +EG
Sbjct: 64 -----------FLG-YVSSLVEPSKVGQFDQV-------------LNLCLTEFENCYLEG 98
Query: 1778 KS-HPKLLLRRTESVAEKMLSSWFTFLL--------YKFLRECAGEPLY-----LLFRAM 1823
H ++A K+L T L+ Y R A P LFRA
Sbjct: 99 NDIH---------ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA- 148
Query: 1824 KQQVDKGPVDAITAEAR-YSL------SEEKLIRHAIDFKPMTVYVKEKSLDTIYRATPY 1876
V +G A+ ++ +++ Y +E L +Y+ Y
Sbjct: 149 ---VGEG-------NAQLVAIFGGQGNTDD--------------YFEE--LRDLYQT--Y 180
Query: 1877 SLRPRKDDL 1885
DL
Sbjct: 181 --HVLVGDL 187
Score = 36.2 bits (83), Expect = 0.19
Identities = 37/262 (14%), Positives = 76/262 (29%), Gaps = 90/262 (34%)
Query: 1449 DLYRT--TITGALDKMMKYRASSHLAGSYGFEMDNVT----KEIKYY---------KSDY 1493
DLY+T + RA +H +YGF + ++ + + + +Y
Sbjct: 1634 DLYKTSKAAQDVWN-----RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 1494 LTINGQHLDRASQESDVIVKIGTGFCNVTSVSRLQLTCRPPAE--------QPPNKNDDD 1545
+ + + +++ I F + S T R QP
Sbjct: 1689 SAMIFETIVDGKLKTEKI------FKEINEHST-SYTFRSEKGLLSATQFTQP------- 1734
Query: 1546 ESTAELPDVTVIVGNNLKFYIGKLSYSPPAALNS--PLTKTAIV-GKLS---YSPPAALN 1599
A L + + L S + A G S Y+ AL
Sbjct: 1735 ---A-L--TLM-------------EKAAFEDLKSKGLIPADATFAG-HSLGEYA---AL- 1770
Query: 1600 SPLTKTAMYGGI----AIITILFL--IFIAFLIAYRRKSTENTRVLKNMQEQMDILELRV 1653
A + +++ ++F + + + N ++ ++
Sbjct: 1771 ------ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV------A 1818
Query: 1654 AAECKEAFAELQTEITDLTGDL 1675
A+ +EA + + TG L
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWL 1840
Score = 30.8 bits (69), Expect = 7.1
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 1313 YSA---TARSLDPR-VVTILHISGSHMNAAVSLLKHFMMDPPMSAV 1354
Y+A A + +V ++ G M AV + + M A+
Sbjct: 1767 YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 75.7 bits (185), Expect = 2e-13
Identities = 118/783 (15%), Positives = 217/783 (27%), Gaps = 258/783 (32%)
Query: 1400 MRSRHGWHTYQCGG---KNPPVYIKDPPHFHV------VYQDKKFCQLCEV-NEVTYSYD 1449
M G H YQ ++ + V + ++ + + V+ +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 1450 LYRTTITGALDKMMKYRASSHLAGSYGFEMDNVTKEIKYYKSDYLTINGQHLDRASQESD 1509
L+ T+ ++M++ L +Y F M + E + Q DR ++
Sbjct: 67 LF-WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRLYNDNQ 124
Query: 1510 VIVKIGTGFCNVTSVSRLQ--LTCRPPAEQ-PPNKNDDDESTAELPDVTVIV----GNNL 1562
V K +VSRLQ L R + P KN V++ G
Sbjct: 125 VFAKY--------NVSRLQPYLKLRQALLELRPAKN-------------VLIDGVLG--- 160
Query: 1563 KFYIGKLSYSPPAALNSPLTKTAIVGKLSYSPPAALNSPLTKTAMYGGIAIITILFLIFI 1622
GK + + S + M I
Sbjct: 161 ---SGK----------TWVAL------------DVCLSYKVQCKMDFKI----------- 184
Query: 1623 AFLIAYRRKSTENTRVLKNMQEQMDILELRVAAECKEAFAELQTEITDLTGDLTSGGIPF 1682
F + + ++ T VL+ +Q+ + ++ + + + ++ I + +L
Sbjct: 185 -FWLNLKNCNSPET-VLEMLQKLLYQIDPNWTSRS-DHSSNIKLRIHSIQAELRR----L 237
Query: 1683 LDYRTYAMMILFPNSEHHAVLQFERPELLHKEKGLRLFGQL--IQNKTFLLLF---IRTL 1737
L + Y N LL L +QN F + L
Sbjct: 238 LKSKPY------ENC------------LL----------VLLNVQNAKAWNAFNLSCKIL 269
Query: 1738 ESNRYFSMRDRVNVASLIMVTLQNILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLS 1797
+ R+ + D ++ A+ ++L + TL T + +L
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTL---------------------TPDEVKSLLL 308
Query: 1798 SWFTFLLYKFLRE-CAGEPLYL-LFRAMKQQVDKGPVDAITAEARYSLSEEKLIRHAIDF 1855
+ RE P L + + T + + + I
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRD------GLATWD-NWKHVNCDKLTTII-- 359
Query: 1856 KPMTVYVKEKSLDTIYRATPYSLRPRKDDL-----DVEWRTGN--TGRL-ILYDYDSTTK 1907
E SL+ + P R D L + T L +++ +
Sbjct: 360 --------ESSLNVL---EPAEYRKMFDRLSVFPPSA-----HIPTILLSLIWFDVIKSD 403
Query: 1908 VEGEWKKVNTLNHYRVPDGGCLNLVSKQYNLSI------LSEKTDKYETLNLSKMGRNTS 1961
V VN L+ Y + K+ +SI L K + L+ S +
Sbjct: 404 VM---VVVNKLHKY-----SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 1962 PLNRDHDGMAKE-------WHLVKHHDSDNQKEGERSNKMVSEIYLTRLLATKGTLQKFV 2014
P D D + H+ HH L ++
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIG-HH-----------------------LKNIEHPERM- 490
Query: 2015 DDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLRFWVNLI 2074
LF +F F FL +Q + H T W ++ L L
Sbjct: 491 -TLFRMVFLD--------------FRFL-EQKIRHDST------AWNASGSILNTLQQLK 528
Query: 2075 KNPNFVFDIHKSN--IVDSCLSVVAQTFMDSCSTSDHRLGKDSPSSKL----LYAKDIPA 2128
++ D +V++ L F+ + S + L L A+D
Sbjct: 529 FYKPYICDNDPKYERLVNAIL-----DFLPKIEENLIC----SKYTDLLRIALMAEDEAI 579
Query: 2129 YKE 2131
++E
Sbjct: 580 FEE 582
Score = 72.2 bits (176), Expect = 2e-12
Identities = 84/645 (13%), Positives = 174/645 (26%), Gaps = 192/645 (29%)
Query: 45 EAFIDDLPCRITSVEP-------EMAHCVTSASDRQRNGKLSMKF-DKGT----RFFDGS 92
+AF+D+ C+ P E+ H + S +L K +F +
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 93 L---YEYV--------EDPT------IDSVDSGIQSGQGLKYPKGFPAGGTRINVVG--K 133
L Y+++ P+ I+ D Q + K +R+ +
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ--VFAKYNV---SRLQPYLKLR 141
Query: 134 NLLYIKDPHIYV-VYKDKKFVNSC---EVMSNNYMICTAPT----ITGALDKIDEEHPEQ 185
L P V + + +V + + C + E E
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 186 LEYGFEMDNVTSVRNLSSKLNSPYFLFPNPIYEPF--SEEIKYYKSDYLTINGQH----- 238
L+ L +++ + + I+ L +
Sbjct: 202 LQ------------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLL 248
Query: 239 -LDRASQESDV----IVK---------IGTGFCNVTSVSRLQLTCRPPAEQPPNKNDDDE 284
L +V + T F VT T + DE
Sbjct: 249 VLL------NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 285 STAELPDVTVIVGNNLKFYIGKLSYSPPAALN-SPLTKTAMYGGIAIITILFLIFIAFLI 343
+ ++ L L P L +P ++II +A
Sbjct: 303 VKS-------LLLKYLDCRPQDL---PREVLTTNPRR-------LSIIAESIRDGLATWD 345
Query: 344 AYRRKSTEN-TRVLKNMQEQMDILELRVAAEC---------KAPIYHTNPILILCVSGTC 393
++ + + T ++++ ++ E R + A I P ++L +
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYR---KMFDRLSVFPPSAHI----PTILLSL---- 394
Query: 394 TVRSL------QNISDIVQN-VREAVVANNGNASTFAFIAPGPPKPPSTHVMYVGVTFTG 446
+ ++ +V + ++V ST S +Y+ +
Sbjct: 395 ----IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-----------SIPSIYLELKVK- 438
Query: 447 NSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVNNLARERYIINYVYGF------- 499
++ +D + + DS ++L Y+ Y Y
Sbjct: 439 ----LENEYALHRSIVDHYNIPKTFDS----------DDLIPP-YLDQYFYSHIGHHLKN 483
Query: 500 -----SSEGFS--Y----FLTTQLKSNIGTSFYISKLVRICHDDSNYYSYTEIPITCNSN 548
F + FL +++ + ++ Y Y I N
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY----ICDNDP 539
Query: 549 SGKQY--NLVQAGFVGKPGSDLAGDLGITAQDDVL-FAVFAESEA 590
++ ++ F+ K +L + D+L A+ AE EA
Sbjct: 540 KYERLVNAILD--FLPKIEENLI----CSKYTDLLRIALMAEDEA 578
Score = 71.0 bits (173), Expect = 5e-12
Identities = 105/712 (14%), Positives = 203/712 (28%), Gaps = 240/712 (33%)
Query: 1699 HHAVLQFERPELLHKEKGLRLFGQLIQNKTFLLLFIRTLESNRYFSMRDRVNVASLIMVT 1758
HH + FE E ++ + ++ F F+ + +D +
Sbjct: 3 HHHHMDFETGEHQYQ------YKDILS--VFEDAFVDNFD------CKD-------VQDM 41
Query: 1759 LQNILKTLLAELIEKCMEGKSHPK-------LLLRRTESVAEKMLSSWFTFLL---YKFL 1808
++IL E I+ + K LL + E + +K + +L YKFL
Sbjct: 42 PKSILSK---EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE----VLRINYKFL 94
Query: 1809 RECAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLSEEKLIRHAIDFKPMTVYVKEKSLD 1868
P+ + + P Y ++L F V + +
Sbjct: 95 M----SPI--------KTEQRQPSM---MTRMYIEQRDRLYNDNQVFAKYNVS-RLQPYL 138
Query: 1869 TIYRATPYSLRPRKDDLDVEWRTGNTGRLIL-----YDYDSTTKVEGE--W--------- 1912
+ +A LRP K ++ ++ G +G+ + Y K++ + W
Sbjct: 139 KLRQAL-LELRPAK-NVLIDGVLG-SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 1913 ----KKVNTLNHYRVPDGGCLN--------------------LVSKQYN--LSILSEKTD 1946
+ + L + P+ + L SK Y L +L +
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 1947 K--YETLNLS-KM---GRNTSPLNRDHDGMAKEWHLVKHHDSDNQKEGERSNKMVSEIYL 2000
+ NLS K+ R D A H+ H S E
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQ--VTDFLSAATTTHISLDHHSMTLTPDE----------- 302
Query: 2001 TRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTW 2060
K L K++D + + + P + + + + D + TW
Sbjct: 303 -----VKSLLLKYLDCRPQDLPREVLTTN--PRRLSIIAESIRDG-----------LATW 344
Query: 2061 KSNSLPLRFW--VNLIKNPNFVFDIHKSNIVDSCLSVVAQTFMDSCSTSDHR-----LG- 2112
W VN K + I++S L+V+ +++R L
Sbjct: 345 D-------NWKHVNCDK---------LTTIIESSLNVL--------EPAEYRKMFDRLSV 380
Query: 2113 --KDSPSSKLLYAKDIPA-----YKEWVERYYSDIKSMQAISDQDMNAMLAEESRLHNSE 2165
+ IP W + SD+ + ++ L E+ E
Sbjct: 381 FPPSAH---------IPTILLSLI--WFDVIKSDV---MVVVNKLHKYSLVEK---QPKE 423
Query: 2166 FSTNCALYELYTYASKYNEQLTVTLEEDEFSQKQRL--AYKLEQKSNAGMGKQKYANNGS 2223
+ + + + +L E+E++ + + Y + +
Sbjct: 424 ST-----ISIPSIYLELKVKL-----ENEYALHRSIVDHYNIPKT--------------- 458
Query: 2224 GSYHSNAYSPSEYNGNYGAGNHSNAYPTHSSSSLYGEEGDDEDINIH-NVSTL-SKSRKF 2281
+ S+ P Y Y +H + H + + E + + L K R
Sbjct: 459 --FDSDDLIP-PYLDQYFY-SHI-GH--HLKNIEHPER-MTLFRMVFLDFRFLEQKIRHD 510
Query: 2282 TYNDVSPQANSNHYAQANLLNNYAPANTNSYTTSNHSLFQMY---YKYFLIT 2330
+ + + N Q L Y Y N ++ FL
Sbjct: 511 STAWNASGSILNTLQQ---LKFY-----KPYICDNDPKYERLVNAILDFLPK 554
Score = 66.0 bits (160), Expect = 1e-10
Identities = 110/710 (15%), Positives = 198/710 (27%), Gaps = 231/710 (32%)
Query: 1041 EAFIDDLPCRITSVEP-------EMAHCVTSASDRQRNGKL------SESNTQHSFTELV 1087
+AF+D+ C+ P E+ H + S +L + F E
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE-- 84
Query: 1088 QTLTCWDCLNRKDPYCGWCSLDNKCSLRSDCQDAAKDPLSWISYKSGRCTTITSVTPNQL 1147
+ L R + Y + L + ++++ + + +I + +
Sbjct: 85 ------EVL-RIN-Y-KF--LMSP--IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 1148 QRT-TARTLDLAIENLPKLPGQFLCAFTIAEKT-LTTEAVKKTNGVGCITPRTDFLPSIP 1205
R L A+ L + + KT + + + V C F
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC-LSYKVQCKMDFKIFW---- 186
Query: 1206 VGQHNITAKLSVRSSNGPDFVTTK----FMFFDCNTYSSCTQCVSSDFPCDCIKCCQLLG 1261
L++++ N P+ V D N S + I+
Sbjct: 187 ---------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ------ 231
Query: 1262 DVIYCDPMEFTLTPRDYPISTPRLPMSGFSHNCGLCLR---AREKLDAAGVSSKYSATAR 1318
+ L + Y NC L L + +A +S K T R
Sbjct: 232 -----AELRRLLKSKPYE-------------NCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 1319 SLDPRVVTIL------HISGSHMNAAVS-------LLKHFMMDP---PMSAVT----SVS 1358
+V L HIS H + ++ LLK+ P P +T +S
Sbjct: 274 --FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 1359 ------REMA----PWRKPLRQKTAGMAKLQYEASVDCWHRIPEQGMQYPR-MRSRHGWH 1407
R+ W+ K + + E+S++ P R
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDK---LTTII-ESSLNV---------LEPAEYRKM---- 374
Query: 1408 TYQ-CGGKNPPVYIKD---PPH------FHVVYQD-----KKFCQ--LCE--VNEVTYS- 1447
+ V+ P F V+ D K + L E E T S
Sbjct: 375 -FDRLS-----VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 1448 YDLYRTTITGALDKMMKYRASSH--LAGSY----GFEMDNVTKEI--KYYKSDYLTINGQ 1499
+Y L ++ + H + Y F+ D++ +Y+ S ++ G
Sbjct: 429 PSIYL-----ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-HI---GH 479
Query: 1500 HLDRASQESDVIVKIGTGFCNVTSVSRLQLTCRPPAEQPPNKNDDDESTAELPDVTVIVG 1559
HL E V +
Sbjct: 480 HLKNIEH--------------------------------------PERMTLFRMVFL--- 498
Query: 1560 NNLKFYIGKLSYSPPAALNSPLTKTAIVGKLS-YSPPAALNSPLTKTAMYGGIAIITILF 1618
+ +F K+ + A N+ + + +L Y P N P + + AI+ F
Sbjct: 499 -DFRFLEQKIRHDST-AWNASGSILNTLQQLKFYKPYICDNDPKYERLVN---AILD--F 551
Query: 1619 LIFIAFLIAYRRKSTENTRVLKNMQEQMDILELRVAAECKEAFAELQTEI 1668
L I + K T D+L + + AE + F E ++
Sbjct: 552 LPKIEENL-ICSKYT-------------DLLRIALMAEDEAIFEEAHKQV 587
Score = 50.2 bits (119), Expect = 9e-06
Identities = 76/516 (14%), Positives = 132/516 (25%), Gaps = 176/516 (34%)
Query: 453 EVPSIASRSLDPERMFQIADSAVTTGTRMFVNNLARERYIINYVYGFSSEGFSYFLTTQL 512
S +L R+F S + FV + R Y FL + +
Sbjct: 56 MSKDAVSGTL---RLFWTLLSKQEEMVQKFVEEVLRINY--------------KFLMSPI 98
Query: 513 KS-----NIGTSFYISKLVRICHDDSNYYSYTEIPITCNSNSGKQY--------NLVQAG 559
K+ ++ T YI + R+ +D+ + Y N + + Y L A
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-------NVSRLQPYLKLRQALLELRPAK 151
Query: 560 FV---GKPG---SDLAGDLGITAQDDVL-----FAVF----AESEAPDGEGSNRPKNSSA 604
V G G + +A D + F +F +P+ +
Sbjct: 152 NVLIDGVLGSGKTWVALD---VCLSYKVQCKMDFKIFWLNLKNCNSPET----VLEMLQK 204
Query: 605 LC--IYPLASIRRKFMQNIKTCFSGQGNRGLDFI-SPAHP-CVQTKLQTIGEDFCGL--- 657
L I P + R NIK + S + C L
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--------------LLVL 250
Query: 658 -DVNTPLGGENPIEAVAVLNFSVRCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSSIAI 716
+V A F++ C + T T V + ++
Sbjct: 251 LNVQNA----KAWNA-----FNLSCK-ILLT-TRFKQVTDF-LSAATTTHISLD------ 292
Query: 717 EYGDVKVDENMTVNADLHLDSKAMHLYVMTERRVSKVKVQECKVYKTCCLGFQP----TI 772
+T + L K + R + + P I
Sbjct: 293 -----HHSMTLTPDEVKSLLLKYLDC------RPQDLPREVLTT--------NPRRLSII 333
Query: 773 AA------CVASNSKKAVNVKV-HIVGQFIA-------QTRFVCQFNI--EGRVTSVN-- 814
A N K K+ I+ + + F + ++ S +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVFPP----SAHIP 388
Query: 815 AQLL----GDVIYCDPMEFT---------------YTSRLSNINASFAVIWGGSKPLDNP 855
LL DVI D M T + +I L+N
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL------KVKLENE 442
Query: 856 DNVH---VNIYRCRDLANNCGLCLALPEKYGCGWCQ 888
+H V+ Y ++ L ++Y +
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQY---FYS 475
>3muj_A Transcription factor COE3; immunoglobulin like fold,
helix-loop-helix, structural genom consortium, SGC, DNA
binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Length = 138
Score = 55.0 bits (132), Expect = 1e-08
Identities = 20/102 (19%), Positives = 27/102 (26%), Gaps = 12/102 (11%)
Query: 915 NPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVC 974
P I + P G GG V I G N + ++G + V P I
Sbjct: 5 TPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWSELITP--------HAIRV 56
Query: 975 QVDGPGTRGSREGPVIVKIEDFRGQSKDNYQFVDPVIKSIQP 1016
Q G V V + Q +P
Sbjct: 57 QT----PPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEP 94
Score = 53.5 bits (128), Expect = 3e-08
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 1009 PVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSAS 1066
P IK+I P +G +GG + I G + G ++ + + P T
Sbjct: 6 PCIKAISPSEGWTTGGATVIIIGDNFFDGLQV--VFGTMLVWSELITPHAIRVQTPPR 61
Score = 43.9 bits (103), Expect = 8e-05
Identities = 11/90 (12%), Positives = 27/90 (30%), Gaps = 2/90 (2%)
Query: 21 TKGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSM 80
++G +GG + I G + G ++ + + P T ++++
Sbjct: 14 SEGWTTGGATVIIIGDNFFDGLQV--VFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTL 71
Query: 81 KFDKGTRFFDGSLYEYVEDPTIDSVDSGIQ 110
+ ++D G Q
Sbjct: 72 SYKSKQFCKGAPGRFVYTALNEPTIDYGFQ 101
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold,
TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A
{Mus musculus} PDB: 3n50_A
Length = 402
Score = 50.3 bits (119), Expect = 5e-06
Identities = 25/145 (17%), Positives = 36/145 (24%), Gaps = 16/145 (11%)
Query: 914 PNPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIV 973
P I + P G GG V I G N + I+G + V P I
Sbjct: 230 ATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWSELITP--------HAIR 281
Query: 974 CQVDGPGTRGSREGPVIVKIE----DFRGQSKDNYQFVDPVIKSIQPLQGPRSGGTILHI 1029
Q G V V + F + + + +I H
Sbjct: 282 VQT----PPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQKVIPRHP 337
Query: 1030 SGSHMNAGSRIEAFIDDLPCRITSV 1054
I DL + +
Sbjct: 338 GDPERLPKEVILKRAADLVEALYGM 362
Score = 49.5 bits (117), Expect = 1e-05
Identities = 31/189 (16%), Positives = 49/189 (25%), Gaps = 14/189 (7%)
Query: 911 HTCPNPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGG-VSVAGITCQPYESLYNRT 969
H + E ++ I K F + AG +
Sbjct: 134 HEIMCSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVS 193
Query: 970 TQIVCQVDGPGTRGSREGPVIVKIEDFR-GQSKDNYQFVDPVIKSIQPLQGPRSGGTILH 1028
T + VDG S V + R + D + P IK+I P +G +GG +
Sbjct: 194 TTV--NVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEAATPCIKAISPSEGWTTGGATVI 251
Query: 1029 ISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDR--------QRNGKLSESNTQ 1080
I G + G ++ + + P T K T
Sbjct: 252 IIGDNFFDGLQV--IFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTP 309
Query: 1081 HSFTELVQT 1089
F
Sbjct: 310 GRFIYTALN 318
Score = 34.5 bits (78), Expect = 0.41
Identities = 24/164 (14%), Positives = 49/164 (29%), Gaps = 17/164 (10%)
Query: 21 TKGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSM 80
++G +GG + I G + G ++ + + P T R G + +
Sbjct: 240 SEGWTTGGATVIIIGDNFFDGLQV--IFGTMLVWSELITPHAIRVQTPP--RHIPGVVEV 295
Query: 81 KF-DKGTRFFDGSLYEYVE-DPTIDSVDSGIQSGQGLKYPKGFPAGGTRINVVGKNLLYI 138
K +F G+ ++ ++D G Q Q G
Sbjct: 296 TLSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQ-----------KVIPRHPGDPERLP 344
Query: 139 KDPHIYVVYKDKKFVNSCEVMSNNYMICTAPTITGALDKIDEEH 182
K+ + + + + ++ A I AL + H
Sbjct: 345 KEVILKRAADLVEALYGMPHNNQEIILKRAADIAEALYSVPRNH 388
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 46.7 bits (110), Expect = 2e-05
Identities = 9/82 (10%), Positives = 27/82 (32%), Gaps = 16/82 (19%)
Query: 2130 KEWVERYYSDIKSMQAISDQDMNAMLAEESRLHNSEFSTNCALYELYTYASKYNEQLTVT 2189
++W E ++ + A S E+++ E+ + + +EQ+
Sbjct: 88 RKWREEQRKRLQELDAASKVME-QEWREKAKKDLEEW------NQ------RQSEQVEKN 134
Query: 2190 LEEDEFSQKQRLAYKLEQKSNA 2211
+ + K + ++
Sbjct: 135 KINNRIADKAFYQ---QPDADI 153
>3orj_A Sugar-binding protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology; 2.16A {Bacteroides ovatus}
Length = 439
Score = 45.1 bits (105), Expect = 2e-04
Identities = 13/118 (11%), Positives = 32/118 (27%), Gaps = 8/118 (6%)
Query: 914 PNPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIV 973
P IT G + + G L + K ++ G + +
Sbjct: 112 AAPSITKISNCMPNV--GEPIIVYGSGLTEIAKVVFPG----NVVVTEGIISDLDGEYFM 165
Query: 974 CQVDGPGTRGSREGPVIVKIEDFRGQSKDNYQFVDPVIKSIQPLQGPRSGGTILHISG 1031
+ P G + V+ + S + + ++ + + + G +
Sbjct: 166 VDM--PAGVSEEGGSIFVEGSNGGAYSPAYFNYKKGLLLNFDGVGAQGAWGDSESMIQ 221
Score = 43.9 bits (102), Expect = 6e-04
Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 14/131 (10%)
Query: 914 PNPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIV 973
+ G + I G K G + + ++ +
Sbjct: 23 AKSNVPDRLVDFAR--LGQLIRIEGEGFNGLKKVYINGYNCY------FNPVFVSNKSFL 74
Query: 974 CQVDGPGTRGSREGPVIVKIEDFRGQSKDNYQF----VDPVIKSIQPLQGPRSGGTILHI 1029
V+ + V I + + Y F P I I G + +
Sbjct: 75 VSVNSKVPTTEADENVRNTIRLVKDGGEYVYDFQIRAAAPSITKISNCMPN--VGEPIIV 132
Query: 1030 SGSHMNAGSRI 1040
GS + +++
Sbjct: 133 YGSGLTEIAKV 143
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural
genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens}
SCOP: b.1.18.1
Length = 95
Score = 38.8 bits (90), Expect = 0.002
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 23 GPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSMKF 82
GG + I+G A + D + + ++P + C A D G ++++
Sbjct: 17 SYPEGGVKVLITGPWQEASNNYSCLFDQISVPASLIQPGVLRCYCPAHD---TGLVTLQV 73
Query: 83 DKGTRFFDGSL-YEYVEDPT 101
+ S+ +EY P+
Sbjct: 74 AFNNQIISNSVVFEYKSGPS 93
Score = 38.8 bits (90), Expect = 0.002
Identities = 11/58 (18%), Positives = 21/58 (36%)
Query: 1010 VIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASD 1067
++ P GG + I+G A + D + + ++P + C A D
Sbjct: 8 MVTDYSPEWSYPEGGVKVLITGPWQEASNNYSCLFDQISVPASLIQPGVLRCYCPAHD 65
Score = 32.6 bits (74), Expect = 0.27
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 918 ITSFQPKSGPWEGGTNVTINGINL--GKTFKDIYGGVSVAGITCQP 961
+T + P+ EGG V I G + ++ +SV QP
Sbjct: 9 VTDYSPEWSYPEGGVKVLITGPWQEASNNYSCLFDQISVPASLIQP 54
>3kya_A Putative phosphatase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.77A {Bacteroides
thetaiotaomicron}
Length = 496
Score = 42.2 bits (98), Expect = 0.002
Identities = 21/168 (12%), Positives = 39/168 (23%), Gaps = 15/168 (8%)
Query: 899 CDKGLGTWLNRNHTCPNPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGIT 958
D + + P I+ F PK G + I G N G + V + G
Sbjct: 2 KDDDNVETGAFDPSKP-VAISDFTPKEGG--AYQKLLIYGENFGTDVSKV--KVKIGGKD 56
Query: 959 CQPYESLYNRTTQIVCQVDGPGTRGSREGPVIVKIEDFRGQSKDNYQFVDPVIKSIQPLQ 1018
+ ++T + C V G+ G + + + + K +
Sbjct: 57 AI---VINVKSTYVYCFVP----SGAFSGEIEITVGEGENAVTTTASTTFSYEKKMVVGT 109
Query: 1019 GPRSG---GTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVT 1063
G D + +
Sbjct: 110 LCGYRNNRDDQGWRDGPFDGPEGVKCCGFSDNGRLAFDPLNKDHLYIC 157
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane,
phosphoprotein, SH3-binding, signaling protein; 3.00A
{Rattus norvegicus}
Length = 483
Score = 41.5 bits (96), Expect = 0.003
Identities = 26/181 (14%), Positives = 67/181 (37%), Gaps = 24/181 (13%)
Query: 1704 QFERPELLHKEKGLRLFGQLIQNKTFLLLFIRTLESNRYFSMRDRVNVASLIMVTLQ--N 1761
+++ +L E + + L + + ++ + VAS ++ LQ
Sbjct: 154 RYQTMSILPMELYKEFAEYVTNHYRMLCAVLEPALN-----VKGKEEVASALVHILQSTG 208
Query: 1762 ILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWFTFLLYKFLRECAGEPLYLLFR 1821
K L+++ ++ + L+ R ++A K + + + K+L++ GE + L+
Sbjct: 209 KAKDFLSDMAMSEVDRFMEREHLIFRENTLATKAIEEYMRLIGQKYLKDAIGEFIRALY- 267
Query: 1822 AMKQQVDKGPVDAITAEARYSLSEEKLIRHAIDFKPMTVYVKEKSLDTIYRAT---PYSL 1878
++ + P+ + L H + + E +L + + P L
Sbjct: 268 ESEENCEVDPIK---------CTASSLAEHQANLRMCC----ELALCKVVNSHCVFPREL 314
Query: 1879 R 1879
+
Sbjct: 315 K 315
>1nf1_A NF1-333, protein (neurofibromin); type I neurofibromatosis, RAS, GAP,
signal transduction, cancer, growth regulation, GTP
hydrolysis; 2.50A {Homo sapiens} SCOP: a.116.1.2
Length = 333
Score = 37.0 bits (85), Expect = 0.067
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 17/142 (11%)
Query: 1744 SMRDRVNVASLIMVTL---QNILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWF 1800
+A ++VTL +++L LL + K +E + L R S+A K+++ F
Sbjct: 35 PCSQWDELAR-VLVTLFDSRHLLYQLLWNMFSKEVELADSMQTLFRGN-SLASKIMTFCF 92
Query: 1801 TFLLYKFLRECAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLSEEKLIRHAIDFKPMTV 1860
+L++ L ++ + Q VD E E L + + MT
Sbjct: 93 KVYGATYLQKLLDPLLRIVITSSDWQHVSFEVDPTRLE-----PSESLEENQRNLLQMT- 146
Query: 1861 YVKEKSLDTIYRAT---PYSLR 1879
EK I ++ P LR
Sbjct: 147 ---EKFFHAIISSSSEFPPQLR 165
>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich,
immunoglobulin-like fold, TIG domain, IPT domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 32.7 bits (74), Expect = 0.35
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 7/91 (7%)
Query: 916 PEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITC----QPYESLYNRTTQ 971
P++ ++ P + GG + + G N K ++ G L +
Sbjct: 9 PQVEAYSPSACSVRGGEELVLTGSNFLPDSKVVFIERGPDGKLQWEEEATVNRLQSNEVT 68
Query: 972 IVCQVDGPGTRGSR-EGPVIVKIEDFRGQSK 1001
+ V P R PV V G+ K
Sbjct: 69 LTLTV--PEYSNKRVSRPVQVYFYVSNGRRK 97
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 33.2 bits (75), Expect = 1.1
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 916 PEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVCQ 975
I+ F PK G GT + + G N G I V++ G Q + + + + C
Sbjct: 18 VVISEFSPKEGG--LGTRMLLYGENFGSDISKI--KVTIGG---QDSKVVGAKGKSLYCV 70
Query: 976 VDGPGTRGSREGPVIVKIED 995
V P + + + ++
Sbjct: 71 V--PAKAYDGDIKLSILNDE 88
>1wer_A P120GAP; GTPase activation, RAS, signal transduction, growth
regulation, cancer; 1.60A {Homo sapiens} SCOP: a.116.1.2
PDB: 1wq1_G*
Length = 334
Score = 32.4 bits (73), Expect = 1.9
Identities = 13/104 (12%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 1719 LFGQLIQNKTFLLLFIRTLESNRYFSMRDRVNVASLIMVTLQ--NILKTLLAELIEKCME 1776
++Q + ++ + + +DR +AS+++ + LL L ++ +
Sbjct: 13 FKELILQKELHVVYALSHVCG------QDRTLLASILLRIFLHEKLESLLLCTLNDREIS 66
Query: 1777 GKSHPKLLLRRTESVAEKMLSSWFTFLLYKFLRECAGEPLYLLF 1820
+ L R T ++A ++ + +F+ + + +
Sbjct: 67 MEDEATTLFRAT-TLASTLMEQYMKATATQFVHHALKDSILKIM 109
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen,
platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB:
3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B*
2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B*
1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Length = 472
Score = 32.6 bits (73), Expect = 1.9
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 1091 TCWDCLNRKDPYCGWCSLDNKCSLRSDCQ 1119
+C CL P C WCS + C
Sbjct: 12 SCQQCL-AVSPMCAWCSDEALPLGSPRCD 39
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 32.1 bits (72), Expect = 2.3
Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 3/119 (2%)
Query: 1235 CNTYSSCTQ-CVSSD--FPCDCIKCCQLLGDVIYCDPMEFTLTPRDYPISTPRLPMSGFS 1291
C +C+Q CV+ + + C C + QL C + R S
Sbjct: 43 CQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRS 102
Query: 1292 HNCGLCLRAREKLDAAGVSSKYSATARSLDPRVVTILHISGSHMNAAVSLLKHFMMDPP 1350
L R + + L R++ + +H ++ + + P
Sbjct: 103 EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161
>1j0t_A MIH, MOLT-inhibiting hormone; alpha-helical protein, hormone/growth
factor complex; NMR {Marsupenaeus japonicus} SCOP:
a.163.1.1
Length = 78
Score = 29.6 bits (66), Expect = 2.5
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 505 SYFLTTQLKSNIGTSFYISKLVRICHDDSNYYSYTEIPITCNSN 548
+ F+ + +G K+VR+C D +N + + C +
Sbjct: 1 ASFIDNTCRGVMGNRDIYKKVVRVCEDCTNIFRLPGLDGMCRNR 44
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 31.6 bits (71), Expect = 3.7
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 1091 TCWDCLNRKDPYCGWCSLDNKCSLRSDCQ 1119
+C CL P C WCS + C
Sbjct: 12 SCQQCL-AVSPMCAWCSDEALPLGSPRCD 39
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics,
PSI-2, Pro structure initiative; 1.68A {Caenorhabditis
elegans}
Length = 109
Score = 29.7 bits (67), Expect = 3.8
Identities = 7/56 (12%), Positives = 26/56 (46%)
Query: 1944 KTDKYETLNLSKMGRNTSPLNRDHDGMAKEWHLVKHHDSDNQKEGERSNKMVSEIY 1999
+ Y+ L +++ + L + + +A++ H + + + + E ++++ Y
Sbjct: 14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAY 69
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 3.8
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 17/38 (44%)
Query: 2000 LTRLLATKGTLQKFVDDLFETIFSTAHRGSALP-LAIK 2036
L +L + +L+ + DD SA P LAIK
Sbjct: 22 LKKL---QASLKLYADD------------SA-PALAIK 43
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion;
HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A*
2p28_A*
Length = 280
Score = 30.6 bits (68), Expect = 5.3
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 5/42 (11%)
Query: 1091 TCWDCLNRKDPYCGWCS----LDNKCSLRSDCQDAAKDPLSW 1128
+C +C+ P C WC C + +
Sbjct: 10 SCRECI-ESGPGCTWCQKLNFTGPGDPDSIRCDTRPQLLMRG 50
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich,
fibronecti receptor, cell adhesion-immune system complex;
HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Length = 454
Score = 31.0 bits (69), Expect = 5.7
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 1091 TCWDCLNRKDPYCGWCSLDN 1110
+C +C+ + P CGWC+
Sbjct: 14 SCGECI-QAGPNCGWCTNST 32
>2fd6_U Urokinase plasminogen activator surface receptor; UPAR, ATF, ATN-615
antibody, FAB, ternary complex, immune SY hydrolase; HET:
PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.7.1.3
g.7.1.3 g.7.1.3 PDB: 3bt2_U* 3bt1_U* 2i9b_E* 3u74_U*
3u73_U*
Length = 276
Score = 30.8 bits (68), Expect = 5.9
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 1166 PGQFLCAFTIAEKTLTTEAVKKTNGVGCITPRTDFLPSIPVGQHNITAKLSVRSS---NG 1222
GQ LC TI E ++ + +T+ S G + V N
Sbjct: 20 LGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQ 79
Query: 1223 PDFVTTKFMFFDCNTYSSCTQCVSSDFPCD 1252
+ + + + + + Y C C SSD C+
Sbjct: 80 GN--SGRAVTYSRSRYLECISCGSSDMSCE 107
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0
junctions, AQP0, lens MIP, lipid-protein interac
membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries}
SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Length = 263
Score = 30.4 bits (69), Expect = 5.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 1324 VVTILHISGSHMNAAVSL 1341
V + HISG+H+N AV+
Sbjct: 56 VQAVGHISGAHVNPAVTF 73
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal,
electron diffraction, electron microscopy, membrane
protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Length = 301
Score = 30.5 bits (69), Expect = 6.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 1324 VVTILHISGSHMNAAVSL 1341
V HISG H+N AV++
Sbjct: 63 VQCFGHISGGHINPAVTV 80
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P
protein structure initiative, center for structures of
MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli}
PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A*
3nka_A* 3nkc_A*
Length = 234
Score = 30.2 bits (69), Expect = 6.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 1324 VVTILHISGSHMNAAVSL 1341
+ HISG H N AV++
Sbjct: 54 AFAVGHISGGHFNPAVTI 71
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water
transport, X-RAY diffraction, lipid, phosphatidylserine,
PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo
sapiens}
Length = 266
Score = 30.4 bits (69), Expect = 6.7
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 1324 VVTILHISGSHMNAAVSL 1341
+ +SG H+N A++L
Sbjct: 58 AQALGPVSGGHINPAITL 75
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C
membrane protein, baculovirus expression system,
glycoprote membrane; 10.00A {Rattus norvegicus}
Length = 340
Score = 30.6 bits (69), Expect = 7.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 1324 VVTILHISGSHMNAAVSL 1341
V HISG H+N AV++
Sbjct: 102 VQCFGHISGGHINPAVTV 119
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane
helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB:
1h6i_A 1fqy_A 1ih5_A
Length = 271
Score = 30.4 bits (69), Expect = 7.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 1324 VVTILHISGSHMNAAVSL 1341
++ HISG+H+N AV+L
Sbjct: 66 AQSVGHISGAHLNPAVTL 83
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel,
structu genomics, PSI-2, protein structure initiative;
2.01A {Agrobacterium tumefaciens str}
Length = 256
Score = 30.0 bits (68), Expect = 7.7
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 1324 VVTILHISGSHMNAAVSL 1341
+ ISG H N AVS+
Sbjct: 79 AYAVGGISGGHFNPAVSV 96
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure
initiative, center for structures of MEMB proteins, CSMP,
glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Length = 223
Score = 29.9 bits (68), Expect = 8.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 1324 VVTILHISGSHMNAAVSL 1341
V HISG H+N AV++
Sbjct: 54 VQCFGHISGGHINPAVTV 71
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN
0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 30.3 bits (67), Expect = 8.3
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 9/56 (16%)
Query: 1057 EMAHCVTSASDR--QRNGKLSESNTQHSFTELVQTLTCWDCLNRKDPYCGWCSLDN 1110
E+ + S D RN LS + +C C+ P C WC N
Sbjct: 1 ELDAKIPSTGDATEWRNPHLSMLGSCQPAP------SCQKCI-LSHPSCAWCKQLN 49
>2x36_A LON protease homolog, mitochondrial; hydrolase, catalytic DYAD,
transit peptide; 2.00A {Homo sapiens}
Length = 207
Score = 29.8 bits (68), Expect = 8.4
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 15/81 (18%)
Query: 661 TPLGGEN-PIEAVAVLNFSVRCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSSIAIEY- 718
T +GG +E + G V TG L +V+ E++ IA +
Sbjct: 19 TAMGGSTLFVETSLR---RPQDKDAKGDKDGSLEV------TGQLGEVMKESARIAYTFA 69
Query: 719 ----GDVKVDENMTVNADLHL 735
+ V + +HL
Sbjct: 70 RAFLMQHAPANDYLVTSHIHL 90
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 30.3 bits (68), Expect = 8.7
Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 6/79 (7%)
Query: 899 CDKGLGTWLNRNHTCPNPEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGIT 958
D T + P + SF P G V + G N G + V
Sbjct: 2 SDDNKTTGATYDPNQP-VTVESFMPVEGK--LREKVIVKGSNFGTDKSKVK--VYFVDEA 56
Query: 959 CQPYESLYNRT-TQIVCQV 976
+ ++ + C
Sbjct: 57 AERLSTVIGIDNNTLYCLA 75
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 30.2 bits (69), Expect = 9.1
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 16/96 (16%)
Query: 639 AHPCVQTKLQTIGEDFCGLDVNTP-----LGGENPIEAVAVLNFSVRCTAVAATSTGDYT 693
AH +L E+ L+V TP + G+ + V + + D
Sbjct: 189 AHEASVKELMKAHEE-GRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEV---DAV 244
Query: 694 VVFIG--TDTGHLKKVVVETSSIAIEYGDVKVDENM 727
++ G T G L +A+E +KVD M
Sbjct: 245 LILAGYITKLGPLAN-----WGLALEKNKIKVDTTM 275
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 30.5 bits (68), Expect = 9.2
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 1091 TCWDCLNRKDPYCGWCSLDNKCS 1113
+C +C+ P C WC N
Sbjct: 10 SCRECI-ESGPGCTWCQKLNFTG 31
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 36,048,262
Number of extensions: 2193983
Number of successful extensions: 4358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4246
Number of HSP's successfully gapped: 122
Length of query: 2400
Length of database: 6,701,793
Length adjustment: 109
Effective length of query: 2291
Effective length of database: 3,658,404
Effective search space: 8381403564
Effective search space used: 8381403564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)