RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15505
(2400 letters)
>d1shyb1 b.69.12.1 (B:40-515) Hepatocyte growth factor receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 476
Score = 254 bits (649), Expect = 3e-74
Identities = 92/399 (23%), Positives = 165/399 (41%), Gaps = 41/399 (10%)
Query: 385 LILCVS---GTCTVRSLQN-----ISDIVQNVREAVVANNGNASTFAFIAPGPPKPPSTH 436
LI C S GTC + I V + + A G S
Sbjct: 91 LISCGSVNRGTCQRHVFPHNHTADIQSEVHCIFSPQIEEPSQCPDCVVSALGAKVLSSVK 150
Query: 437 ----VMYVGVTFTGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVNNLARERYI 492
+VG T + + SI+ R L + + +T + + V R+ Y
Sbjct: 151 DRFINFFVGNTINSSYFPDHPLHSISVRRL---KETKDGFMFLTDQSYIDVLPEFRDSYP 207
Query: 493 INYVYGFSSEGFSYFLTTQLKSNIGTSFYISKLVRICHDDSNYYSYTEIPITC------- 545
I YV+ F S F YFLT Q ++ + ++++R C +S +SY E+P+ C
Sbjct: 208 IKYVHAFESNNFIYFLTVQRETL-DAQTFHTRIIRFCSINSGLHSYMEMPLECILTELVP 266
Query: 546 -NSNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRPKNSSA 604
S + +N++QA +V KPG+ LA +G + DD+LF VFA+S+ S P + SA
Sbjct: 267 RGSTKKEVFNILQAAYVSKPGAQLARQIGASLNDDILFGVFAQSK----PDSAEPMDRSA 322
Query: 605 LCIYPLASIRRKFMQNIKTCFSGQGNRGLD-FISPAHPCVQTKLQTIGEDFCGLD-VNTP 662
+C +P+ + F + + R L F P H + C
Sbjct: 323 MCAFPIKYVNDFFNKIVNKN----NVRCLQHFYGPNHEHCFNRTLLRNSSGCEARRDEYR 378
Query: 663 LGGENPIEAVAVLNF---SVRCTAVAATSTGDYTVVFIGTDTGHLKKVVVETSSIAIEYG 719
++ V + V T+++ GD T+ +GT G +VVV S + +
Sbjct: 379 TEFTTALQRVDLFMGQFSEVLLTSISTFIKGDLTIANLGTSEGRFMQVVVSRSGPSTPHV 438
Query: 720 DVKVDENMTVNADLHLD---SKAMHLYVMTERRVSKVKV 755
+ +D + V+ ++ ++ ++ + V+T ++++K+ +
Sbjct: 439 NFLLDSHP-VSPEVIVEHTLNQNGYTLVITGKKITKIPL 476
>d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 495
Score = 179 bits (455), Expect = 2e-48
Identities = 57/423 (13%), Positives = 128/423 (30%), Gaps = 77/423 (18%)
Query: 385 LILC----VSGTCTVRSLQNISDIVQNVREAVVANNGNASTFAFIAPGPPKPPSTHVMYV 440
L C CT + + + + NG +P PK + ++
Sbjct: 104 LYACGTGAFHPICTYIEVGHHPEDNIFKLQDSHFENG-----RGKSPYDPKLLTASLLID 158
Query: 441 GVTFTGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTR-MFVNNLARERYIINYVYGF 499
G ++G + R+L + F++ ++I
Sbjct: 159 GELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPRFISA-----HLIPE-SDN 212
Query: 500 SSEGFSYFLTTQ--LKSNIGTSFYISKLVRICHDD--------SNYYSYTEIPITC---- 545
+ YF + + +++ +IC +D + + ++ + + C
Sbjct: 213 PEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPG 272
Query: 546 NSNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRPKNSSAL 605
+ ++ +Q F+ ++ +++ VF S SA+
Sbjct: 273 PNGIDTHFDELQDVFLMNSKDP---------KNPIVYGVFTTSSNIFK--------GSAV 315
Query: 606 CIYPLASIRRKFMQNIKTCFSGQG------------------NRGLDFISPAHPCVQTKL 647
C+Y ++ +RR F+ ++ +
Sbjct: 316 CMYSMSDVRRVFLGPYAHRDGPNYQWVPYQGRVPYPRPGTCPSKTFGGFDSTKDLPDDVI 375
Query: 648 QTIGEDFCGLDVNTPLGGENPIEAVAVLNFSVRCTAVA----ATSTGDYTVVFIGTDTGH 703
+ P+ + V + + T + G Y V+FIGTD G
Sbjct: 376 TFARSHPAMYNPVFPINNRPIMIKTDV---NYQFTQIVVDRVDAEDGQYDVMFIGTDVGT 432
Query: 704 LKKVVVETSSIAIEYGDVKVDENMTVNA-----DLHLDSKAMHLYVMTERRVSKVKVQEC 758
+ KVV + +V ++E + L +K LY+ + V+++ + C
Sbjct: 433 VLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQLPLHRC 492
Query: 759 KVY 761
+Y
Sbjct: 493 DIY 495
>d1olza2 b.69.12.1 (A:3-480) Semaphorin 4d {Human (Homo sapiens)
[TaxId: 9606]}
Length = 478
Score = 174 bits (443), Expect = 5e-47
Identities = 63/416 (15%), Positives = 117/416 (28%), Gaps = 73/416 (17%)
Query: 380 HTNPILILCVS----GTCTVRSLQNISDIVQNVREAVVANNGNASTFAFIAPGPPKPPST 435
+ L +C + C +L + + +N P P T
Sbjct: 95 LSATSLYVCGTNAFQPACDHLNLTSFKFLGKNEDGKG------------RCPFDPAHSYT 142
Query: 436 HVMYVGVTFTGNSPYRSEVPSIASRSLDPERMFQIADSAVTTGTRMFVNNLARERYIINY 495
VM G ++G S I SR+ + FV + +
Sbjct: 143 SVMVDGELYSGTSYNFLGSEPIISRNSSHSPLRTEYAIPWLNEPS-FV---FADVIRKSP 198
Query: 496 VYGFSSEGFSYFLTTQLKS--NIGTSFYISKLVRICHDD--------SNYYSYTEIPITC 545
+ YF T++ I ++ R+C D + S+ + + C
Sbjct: 199 DSPDGEDDRVYFFFTEVSVEYEFVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLIC 258
Query: 546 N-SNSGKQYNLVQAGFVGKPGSDLAGDLGITAQDDVLFAVFAESEAPDGEGSNRPKNSSA 604
+ +SG +N+++ FV + + V +A+F G SA
Sbjct: 259 SRPDSGLVFNVLRDVFVLRSPGL---------KVPVFYALFTPQLNNVG--------LSA 301
Query: 605 LCIYPLASIRRKFMQNIKTCFSGQGNRGLDFISPAHPCVQTKLQTIGEDFCGL------- 657
+C Y L++ F + ++ P + + +
Sbjct: 302 VCAYNLSTAEEVFSHGKYMQSTTVEQSHTKWVRYNGPVPKPRPGACIDSEARAANYTSSL 361
Query: 658 -----------DVNTPLGGENPIEAVAVLNFS-VRCTAVAATSTG-----DYTVVFIGTD 700
D PI+ L V T + T Y V+F+ TD
Sbjct: 362 NLPDKTLQFVKDHPLMDDSVTPIDNRPRLIKKDVNYTQIVVDRTQALDGTVYDVMFVSTD 421
Query: 701 TGHLKKVVVETSSIAIEYGDVKVDENMTVNAD-LHLDSKAMHLYVMTERRVSKVKV 755
G L K + ++ I + V L +Y + V + +
Sbjct: 422 RGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQAPL 477
>d1uadc_ b.1.18.18 (C:) Exocyst complex component Sec5, Ral-binding
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 92
Score = 62.4 bits (151), Expect = 3e-12
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 916 PEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVCQ 975
P +T P G T VTI G NLG D+ G+++ G C + + ++IVC+
Sbjct: 5 PLVTGISPNEGI--PWTKVTIRGENLGTGPTDL-IGLTICGHNCLL-TAEWMSASKIVCR 60
Query: 976 VDGPGTRGSREGPVIVKIED-FRGQSKDNYQFVDP 1009
V G G +IV + RG S +++ + P
Sbjct: 61 V-GQAKNDK--GDIIVTTKSGGRGTSTVSFKLLKP 92
Score = 38.6 bits (89), Expect = 7e-04
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 1009 PVIKSIQPLQGPRSGGTILHISGSHMNAGS----RIEAFIDDLPCRITSVEPEMAHCVTS 1064
P++ I P +G T + I G ++ G + + + C
Sbjct: 5 PLVTGISPNEGI--PWTKVTIRGENLGTGPTDLIGLTICGHNCLLTAEWMSASKIVCRVG 62
Query: 1065 AS 1066
+
Sbjct: 63 QA 64
Score = 28.9 bits (64), Expect = 2.0
Identities = 8/77 (10%), Positives = 21/77 (27%), Gaps = 5/77 (6%)
Query: 26 SGGTILHISGSHMNAGS----RIEAFIDDLPCRITSVEPEMAHCVTSASDRQRNGKLSMK 81
T + I G ++ G + + + C + G + +
Sbjct: 16 IPWTKVTIRGENLGTGPTDLIGLTICGHNCLLTAEWMSASKIVCRVGQAK-NDKGDIIVT 74
Query: 82 FDKGTRFFDGSLYEYVE 98
G R ++ ++
Sbjct: 75 TKSGGRGTSTVSFKLLK 91
>d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 58.5 bits (141), Expect = 2e-11
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 1091 TCWDCLNRKDPYCGWCSLDNKCSLRSDCQDAAKDPLSWISYKSGRC 1136
TC DC+ +DPYC W C + ++ + +S + C
Sbjct: 7 TCEDCVLARDPYCAWSPPTATCVALHQTESPSRGLIQEMSGDASVC 52
Score = 41.5 bits (97), Expect = 3e-05
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 5/50 (10%)
Query: 870 NNCGLCLALPEKYGCGWCQSSKRCEIFEQCDKGLGTWLNR----NHTCPN 915
C C+ + Y C W + C Q + + CP+
Sbjct: 6 GTCEDCVLARDPY-CAWSPPTATCVALHQTESPSRGLIQEMSGDASVCPD 54
>d1cxla1 b.1.18.2 (A:497-583) Cyclomaltodextrin glycanotransferase,
domain D {Bacillus circulans, different strains [TaxId:
1397]}
Length = 87
Score = 47.3 bits (112), Expect = 5e-07
Identities = 15/80 (18%), Positives = 23/80 (28%), Gaps = 9/80 (11%)
Query: 916 PEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVCQ 975
P I P G +TI+G G + G V + TQI +
Sbjct: 3 PTIGHVGPMMAK--PGVTITIDGRGFGSSK----GTVYFGTTAVSGADITSWEDTQIKVK 56
Query: 976 VDGPGTRGSREGPVIVKIED 995
+ G+ + V
Sbjct: 57 I-PAVAGGN--YNIKVANAA 73
Score = 40.4 bits (94), Expect = 2e-04
Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 4/60 (6%)
Query: 1009 PVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAF--IDDLPCRITSVEPEMAHCVTSAS 1066
P I + P+ G + I G + F ITS E A
Sbjct: 3 PTIGHVGPMMAK--PGVTITIDGRGFGSSKGTVYFGTTAVSGADITSWEDTQIKVKIPAV 60
Score = 30.4 bits (68), Expect = 0.47
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 232 LTINGQHLDRASQESDVIVKIGTGFCNVTSVSRLQLTCRPPA 273
+TI+G+ +S+ + ++TS Q+ + PA
Sbjct: 19 ITIDGRGFG-SSKGTVYFGTTAVSGADITSWEDTQIKVKIPA 59
Score = 30.4 bits (68), Expect = 0.47
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 1494 LTINGQHLDRASQESDVIVKIGTGFCNVTSVSRLQLTCRPPA 1535
+TI+G+ +S+ + ++TS Q+ + PA
Sbjct: 19 ITIDGRGFG-SSKGTVYFGTTAVSGADITSWEDTQIKVKIPA 59
Score = 29.6 bits (66), Expect = 1.0
Identities = 9/47 (19%), Positives = 11/47 (23%), Gaps = 2/47 (4%)
Query: 26 SGGTILHISGSHMNAGSRIEAF--IDDLPCRITSVEPEMAHCVTSAS 70
G + I G + F ITS E A
Sbjct: 14 KPGVTITIDGRGFGSSKGTVYFGTTAVSGADITSWEDTQIKVKIPAV 60
>d1shyb2 g.16.2.1 (B:516-564) Hepatocyte growth factor receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 49
Score = 46.0 bits (109), Expect = 6e-07
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 1088 QTLTCWDCLNRKDPY-CGWCSLDNKCSLRSDCQD 1120
+C CL+ CGWC +KC +C
Sbjct: 7 HFQSCSQCLSAPPFVQCGWCH--DKCVRSEECLS 38
Score = 44.5 bits (105), Expect = 2e-06
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 870 NNCGLCLALPEKYGCGWCQSSKRCEIFEQCDKGLGTWLNRNHTCP 914
+C CL+ P CGWC +C E+C GTW C
Sbjct: 9 QSCSQCLSAPPFVQCGWC--HDKCVRSEECLS--GTWT--QQICL 47
Score = 29.8 bits (67), Expect = 0.33
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 1235 CNTYSSCTQCVSSDFPCDCIKC 1256
C + SC+QC+S+ C C
Sbjct: 5 CRHFQSCSQCLSAPPFVQCGWC 26
>d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1
(NFATC2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 46.1 bits (109), Expect = 2e-06
Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 5/90 (5%)
Query: 916 PEITSFQPKSGPWEGGTNVTINGINLGK----TFKDIYGGVSVAGITCQPYESLYNRTTQ 971
P + S GG + + G N F + + ++
Sbjct: 3 PMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEMEATVDKDKSQPNM 62
Query: 972 IVCQVDGPGTRGSREGPVIVKIEDFRGQSK 1001
+ ++ PV V G+ K
Sbjct: 63 LFVEI-PEYRNKHIRTPVKVNFYVINGKRK 91
Score = 30.3 bits (68), Expect = 0.79
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 1009 PVIKSIQPLQGPRSGGTILHISGSHMNAGSRI 1040
P+++ GG + ++G + + S++
Sbjct: 3 PMVERQDTDSCLVYGGQQMILTGQNFTSESKV 34
>d1qhoa1 b.1.18.2 (A:496-576) Five domain "maltogenic" alpha-amylase
(glucan 1,4-alpha-maltohydrolase), domain D {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 81
Score = 45.4 bits (107), Expect = 2e-06
Identities = 9/58 (15%), Positives = 14/58 (24%), Gaps = 3/58 (5%)
Query: 1009 PVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSAS 1066
P I S+ P G G ++ I G + + S
Sbjct: 4 PQIGSVAPNMGI--PGNVVTIDGKGFGTTQ-GTVTFGGVTATVKSWTSNRIEVYVPNM 58
Score = 43.4 bits (102), Expect = 1e-05
Identities = 22/91 (24%), Positives = 30/91 (32%), Gaps = 15/91 (16%)
Query: 916 PEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVCQ 975
P+I S P G G VTI+G G T + G A + + +I
Sbjct: 4 PQIGSVAPNMGI--PGNVVTIDGKGFGTTQGTVTFGGVTATVK-------SWTSNRIEVY 54
Query: 976 VDGPGTRGSREGPVIVKIEDFRGQSKDNYQF 1006
V G V V G S + Y +
Sbjct: 55 V-PNMAAGL--TDVKVTAG---GVSSNLYSY 79
Score = 34.6 bits (79), Expect = 0.016
Identities = 4/45 (8%), Positives = 8/45 (17%), Gaps = 1/45 (2%)
Query: 26 SGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSAS 70
G ++ I G + + S
Sbjct: 15 IPGNVVTIDGKGFGTTQ-GTVTFGGVTATVKSWTSNRIEVYVPNM 58
Score = 33.8 bits (77), Expect = 0.027
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 232 LTINGQHLDRASQESDVIVKIGTGFCNVTSVSRLQLTCRPPAEQP 276
+TI+G+ + V G V S + ++ P
Sbjct: 20 VTIDGKGFG----TTQGTVTFGGVTATVKSWTSNRIEVYVPNMAA 60
Score = 33.8 bits (77), Expect = 0.027
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 1494 LTINGQHLDRASQESDVIVKIGTGFCNVTSVSRLQLTCRPPAEQP 1538
+TI+G+ + V G V S + ++ P
Sbjct: 20 VTIDGKGFG----TTQGTVTFGGVTATVKSWTSNRIEVYVPNMAA 60
>d3bmva1 b.1.18.2 (A:496-578) Cyclomaltodextrin glycanotransferase,
domain D {Thermoanaerobacterium [TaxId: 28895]}
Length = 83
Score = 44.9 bits (106), Expect = 4e-06
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 12/80 (15%)
Query: 916 PEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVCQ 975
P I P G +TI+G G T + G + I T++ +
Sbjct: 4 PLIGHVGPTMTK--AGQTITIDGRGFGTTSGQVLFGSTAGTIV-------SWDDTEVKVK 54
Query: 976 VDGPGTRGSREGPVIVKIED 995
V T G + +K
Sbjct: 55 V-PSVTPGK--YNISLKTSS 71
Score = 39.1 bits (91), Expect = 4e-04
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 3/57 (5%)
Query: 1009 PVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSA 1065
P+I + P G + I G S + I S + +
Sbjct: 4 PLIGHVGPTMTK--AGQTITIDGRGFGTTS-GQVLFGSTAGTIVSWDDTEVKVKVPS 57
Score = 29.5 bits (66), Expect = 0.97
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 232 LTINGQHLDRASQESDVIVKIGTGFCNVTSVSRLQLTCRPPA 273
+TI+G+ S V G+ + S ++ + P+
Sbjct: 20 ITIDGRGFGTTS----GQVLFGSTAGTIVSWDDTEVKVKVPS 57
Score = 29.5 bits (66), Expect = 0.97
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 1494 LTINGQHLDRASQESDVIVKIGTGFCNVTSVSRLQLTCRPPA 1535
+TI+G+ S V G+ + S ++ + P+
Sbjct: 20 ITIDGRGFGTTS----GQVLFGSTAGTIVSWDDTEVKVKVPS 57
Score = 29.1 bits (65), Expect = 1.4
Identities = 7/48 (14%), Positives = 11/48 (22%), Gaps = 3/48 (6%)
Query: 24 PRSG--GTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSA 69
P G + I G S + I S + +
Sbjct: 11 PTMTKAGQTITIDGRGFGTTS-GQVLFGSTAGTIVSWDDTEVKVKVPS 57
>d1cyga1 b.1.18.2 (A:492-574) Cyclomaltodextrin glycanotransferase,
domain D {Bacillus stearothermophilus [TaxId: 1422]}
Length = 83
Score = 43.1 bits (101), Expect = 2e-05
Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 12/80 (15%)
Query: 916 PEITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVCQ 975
P I P G G VTI+G G + G + A + QIV
Sbjct: 4 PIIGHVGPMMGQ--VGHQVTIDGEGFGTNTGTVKFGTTAANVV-------SWSNNQIVVA 54
Query: 976 VDGPGTRGSREGPVIVKIED 995
V + G + V+
Sbjct: 55 VP-NVSPGK--YNITVQSSS 71
Score = 38.5 bits (89), Expect = 6e-04
Identities = 8/57 (14%), Positives = 14/57 (24%), Gaps = 3/57 (5%)
Query: 1009 PVIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSA 1065
P+I + P+ G G + I G + + S
Sbjct: 4 PIIGHVGPMMGQ--VGHQVTIDGEGFGTNTGT-VKFGTTAANVVSWSNNQIVVAVPN 57
>d2cxka1 b.1.18.1 (A:872-953) Calmodulin binding transcription
activator 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 36.4 bits (83), Expect = 0.004
Identities = 11/61 (18%), Positives = 21/61 (34%)
Query: 1010 VIKSIQPLQGPRSGGTILHISGSHMNAGSRIEAFIDDLPCRITSVEPEMAHCVTSASDRQ 1069
++ P GG + I+G A + D + + ++P + C A D
Sbjct: 1 MVTDYSPEWSYPEGGVKVLITGPWQEASNNYSCLFDQISVPASLIQPGVLRCYCPAHDTG 60
Query: 1070 R 1070
Sbjct: 61 L 61
Score = 33.0 bits (74), Expect = 0.059
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 4/57 (7%)
Query: 918 ITSFQPKSGPWEGGTNVTINGINLGKTFKDIYGGVSVAGITCQPYESLYNRTTQIVC 974
+T + P+ EGG V I G + + P + + C
Sbjct: 2 VTDYSPEWSYPEGGVKVLITGPW----QEASNNYSCLFDQISVPASLIQPGVLRCYC 54
>d1nf1a_ a.116.1.2 (A:) GAP related domain of neurofibromin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 35.7 bits (82), Expect = 0.062
Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 19/143 (13%)
Query: 1744 SMRDRVNVASLIMVTLQ--NILKTLLAELIEKCMEGKSHPKLLLRRTESVAEKMLSSWFT 1801
+A +++ ++L LL + K +E + L R S+A K+++ F
Sbjct: 27 PCSQWDELARVLVTLFDSRHLLYQLLWNMFSKEVELADSMQTLFRGN-SLASKIMTFCFK 85
Query: 1802 FLLYKFLRECAGEPLYLLFRAMKQQVDKGPVDAITAEARYSLSE--EKLIRHAIDFKPMT 1859
+L++ L ++ + Q VD E SL E L++
Sbjct: 86 VYGATYLQKLLDPLLRIVITSSDWQHVSFEVDPTRLEPSESLEENQRNLLQMT------- 138
Query: 1860 VYVKEKSLDTIY---RATPYSLR 1879
EK I P LR
Sbjct: 139 ----EKFFHAIISSSSEFPPQLR 157
>d1wera_ a.116.1.2 (A:) p120GAP domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 324
Score = 33.8 bits (77), Expect = 0.23
Identities = 28/192 (14%), Positives = 63/192 (32%), Gaps = 21/192 (10%)
Query: 2009 TLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALNHGITDPEVVHTWKSNSLPLR 2068
L + +L E IF + LP ++Y++ L + T+ + S + LR
Sbjct: 130 HLLNILSELVEKIFMASEI---LPPTLRYIYGCLQKSVQHKWPTNTTMRTRVVSGFVFLR 186
Query: 2069 FWVNLIKNPN--FVFDIHKSNIVDSCLSVVAQTFMDSCSTSDHRLGKDSPSSKLLYAKDI 2126
I NP + S I L +VA++ + + K+ +
Sbjct: 187 LICPAILNPRMFNIISDSPSPIAARTLILVAKSVQ-NLANLVEFGAKEPYMEGV------ 239
Query: 2127 PAYKEWVERYYSDIKS-MQAISDQDMNAMLAEESRLHNSEFSTNCALYELYTYASKYNEQ 2185
+++ + + + + ++ H+ + L L+ ++++
Sbjct: 240 ---NPFIKSNKHRMIMFLDELGNVP----ELPDTTEHSRTDLSRD-LAALHEICVAHSDE 291
Query: 2186 LTVTLEEDEFSQ 2197
L E Q
Sbjct: 292 LRTLSNERGAQQ 303
>d1tyeb3 g.16.2.1 (B:1-57) Integrin beta-3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 28.3 bits (63), Expect = 1.2
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 1091 TCWDCLNRKDPYCGWCSLDNKCSLRSDCQD 1120
+C CL P C WCS + C
Sbjct: 12 SCQQCL-AVSPMCAWCSDEALPLGSPRCDL 40
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 29.1 bits (65), Expect = 1.7
Identities = 4/60 (6%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 1940 ILSEKTDKYETLNLSKMGRNTSPLNRDHDGMAKEWHLVKHHDSDNQKEGERSNKMVSEIY 1999
+L K++ + ++ + + + + H K ++ + +++ +
Sbjct: 28 VLWAGETKWKPVGMADL-VTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAW 86
>d2g8la1 e.50.1.1 (A:1-284) Hypothetical protein PH1575 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 284
Score = 30.6 bits (69), Expect = 2.4
Identities = 12/101 (11%), Positives = 33/101 (32%), Gaps = 12/101 (11%)
Query: 1731 LLFIRTLESNR----YFSMRDRVNVASLIMVTLQNILKTLLAELIEKCMEGKSHPKLLLR 1786
+ I + Y + ++ + T++++ + L +L + G + L+
Sbjct: 165 AILIEKIREISNAEVYIAGKEG---PIINDATVEDLKRAGLEKLGKVISTGTRIVGVPLK 221
Query: 1787 RT-ESVAEKMLSSWFTF----LLYKFLRECAGEPLYLLFRA 1822
E + ++ L E ++ L +A
Sbjct: 222 LVSREFMEAFNKADVIIAKGQGNFETLSEINDSRIFFLLKA 262
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 28.2 bits (62), Expect = 3.5
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 13/57 (22%)
Query: 870 NNCGLCLALPEKYGCGWCQSSKRCEIFEQC------------DKGLGTWLNRNHTCP 914
+NC +C C CQ+++ E+C + WL CP
Sbjct: 22 DNCAICR-NHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 77
>d1j0ta_ a.163.1.1 (A:) Mlt-inhibiting hormone (MIH) {Kuruma prawn
(Marsupenaeus japonicus) [TaxId: 27405]}
Length = 78
Score = 27.8 bits (62), Expect = 3.9
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 505 SYFLTTQLKSNIGTSFYISKLVRICHDDSNYYSYTEIPITCNSN 548
+ F+ + +G K+VR+C D +N + + C +
Sbjct: 1 ASFIDNTCRGVMGNRDIYKKVVRVCEDCTNIFRLPGLDGMCRNR 44
>d1gwea_ e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus [TaxId:
1270]}
Length = 498
Score = 29.9 bits (67), Expect = 4.2
Identities = 10/109 (9%), Positives = 27/109 (24%), Gaps = 12/109 (11%)
Query: 1382 ASVDCWHRIPEQGMQYPRMRSRHGWHTYQCGGKNPPVYIKDPPHFHVVYQDKKFCQLCEV 1441
+V + E M Y R + G + + Q
Sbjct: 360 NAVHNYAF--EGQMWYDHTGDRSTYVPNSNGDSWSDETGPVDDGWEADGTLTREAQALRA 417
Query: 1442 NEVTYS--YDLYRTTITGALDKMMKYRASSHLAGSYGFEMDNVTKEIKY 1488
++ + L R ++ + + + V ++++
Sbjct: 418 DDDDFGQAGTLVR--------EVFSDQERDDFVETVAGALKGVRQDVQA 458
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max)
[TaxId: 3847]}
Length = 250
Score = 28.9 bits (64), Expect = 6.0
Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 22/113 (19%)
Query: 2032 PLAIKYMFDFLDDQALNHGITDPEVV-----HTWKSNSLPLRFWVNLIKNPNFVFDIHKS 2086
P A K D G+TD ++V HT + + + +FD
Sbjct: 132 PDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNS-- 189
Query: 2087 NIVDSCLSVVAQTFMDSCSTSDHRLGKDSPSSKLLYAKDIPAYKEWVERYYSD 2139
LS + + SD L D P ++ V++Y +D
Sbjct: 190 -YFTELLSGEKEGLL--QLPSDKALLSD------------PVFRPLVDKYAAD 227
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen
(Populus tremula) [TaxId: 113636]}
Length = 267
Score = 28.9 bits (64), Expect = 7.0
Identities = 15/121 (12%), Positives = 31/121 (25%), Gaps = 4/121 (3%)
Query: 2220 NNGSGSYHSNAYSPSEYNGNYGAGNHSNAYPTHSSSSLYGEEGDDEDINIHNVSTLSKSR 2279
+N ++ G+ + PT + + + + +
Sbjct: 90 TGQPYILQTNVFTGG--KGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFK 147
Query: 2280 KFTYNDVSPQANSNHYAQANLLNNYAPANTNSYTTSNHSL--FQMYYKYFLITGVSRVGP 2337
V N ++L N A ++ S F Y+ F I G
Sbjct: 148 NCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVE 207
Query: 2338 S 2338
+
Sbjct: 208 A 208
>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow
(Bos taurus) [TaxId: 9913]}
Length = 192
Score = 28.6 bits (63), Expect = 7.4
Identities = 12/67 (17%), Positives = 19/67 (28%)
Query: 2289 QANSNHYAQANLLNNYAPANTNSYTTSNHSLFQMYYKYFLITGVSRVGPSFRSGPAFCPT 2348
+ H+ N P T + K++ + GV F G PT
Sbjct: 17 VVAAKHHVNGNRTVEPFPEGTQMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPT 76
Query: 2349 INGTNTG 2355
+G
Sbjct: 77 YKEVCSG 83
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit beta, AccD {Escherichia coli [TaxId:
562]}
Length = 263
Score = 29.0 bits (64), Expect = 7.5
Identities = 24/162 (14%), Positives = 43/162 (26%), Gaps = 8/162 (4%)
Query: 1082 SFTELVQTLTCWDCLNRKD--PYCGWCSLDNKCSLRSDCQDAAKDPLSW--ISYKSGRCT 1137
S EL L D L +D Y + K + D K L + +
Sbjct: 47 SLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKGTLYGMPVVAAAFEFA 106
Query: 1138 TITSVTPNQLQRTTARTLDLAIENLPKLPGQFLCAFTIAEKTLTTEAVKKTNGVGCITPR 1197
+ + + R ++ A+E+ P A A ++ + +
Sbjct: 107 FMGGSMGSVVGARFVRAVEQALED--NCPLICFSASGGARMQEALMSLMQMAKTSAALAK 164
Query: 1198 TDF--LPSIPVGQHNITAKLSVRSSNGPDFVTTKFMFFDCNT 1237
LP I V +S + D +
Sbjct: 165 MQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA 206
>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 453
Score = 29.1 bits (65), Expect = 7.9
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 10/98 (10%)
Query: 1913 KKVNTLNHYRVPDGG----CLNLVSKQYNLSILSEKTDKYETLNLSKMGRNTSPLNRDHD 1968
+ V L DGG +N+V K Y + + Y T +M LN
Sbjct: 130 RLVQFLLMNPANDGGQWDMLVNIVEK-YGVIPKKCFPESYTTEATRRMNDI---LNHKMR 185
Query: 1969 GMAKEWHLVKHHDSDNQKEGERSNKMVSEIYLTRLLAT 2006
+ H + + + M+ EI+ R++
Sbjct: 186 EFCIRLRNLVHSGATKGEISATQDVMMEEIF--RVVCI 221
>d2fpna1 d.129.10.1 (A:1-214) Hypothetical protein YwmB {Bacillus
subtilis [TaxId: 1423]}
Length = 214
Score = 28.3 bits (63), Expect = 8.8
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 54 RITSVEPEMAHCVTSASDRQRNGKLSMKFDKGTRFFDGSLYEYVEDPTIDSVDSGIQSGQ 113
I + + C+ D N L K ++ F E+V +P S+ S
Sbjct: 119 GIFQEKVVIFTCLNGHLDDNMNIVLQKKANQLLNEFQARSVEHVVEPNFVSI-----SAF 173
Query: 114 GLKYPKGFPAGGTRINV 130
++ + ++N+
Sbjct: 174 TDEWEEYIMTSKHKMNL 190
>d1r75a_ b.134.1.1 (A:) Unnamed hypothetical protein {Leishmania
major [TaxId: 5664]}
Length = 121
Score = 27.5 bits (61), Expect = 9.0
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 74 RNGKLSMKFDKGTRFFDGSLYEYVEDP 100
+NGK ++K K F LY +
Sbjct: 4 KNGKPTVKGTKTYPMFSNILYRIADTE 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 8,834,811
Number of extensions: 423188
Number of successful extensions: 1111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1077
Number of HSP's successfully gapped: 50
Length of query: 2400
Length of database: 2,407,596
Length adjustment: 100
Effective length of query: 2300
Effective length of database: 1,034,596
Effective search space: 2379570800
Effective search space used: 2379570800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.8 bits)