BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1551
(190 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5TM62|RT18B_MACMU 28S ribosomal protein S18b, mitochondrial OS=Macaca mulatta
GN=MRPS18B PE=3 SV=1
Length = 258
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 93/161 (57%), Gaps = 9/161 (5%)
Query: 25 QFSLSRICCEEEGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYY 84
Q L +C + E++ P+ P KD +YL SE YQ+ YG PVW Y
Sbjct: 26 QVPLQTLCTKPPSEEDSLSPVPISPYKDE--------PWKYLESEEYQERYGSRPVWADY 77
Query: 85 RRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILS 144
RRNHKG P++TRKTCIR +A GNPCPICRD L + N+KLLEQF+ G I
Sbjct: 78 RRNHKGGVPPQRTRKTCIRGNKVA-GNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFH 136
Query: 145 YMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDY 185
+ TGVC KQH +L AI +A++ GL+ + +P E +D+
Sbjct: 137 SLYTGVCVKQHKRLTQAIQKARDHGLLIYHIPQVEPRDRDF 177
>sp|Q1XHY1|RT18B_PANTR 28S ribosomal protein S18b, mitochondrial OS=Pan troglodytes
GN=MRPS18B PE=3 SV=1
Length = 258
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 90/161 (55%), Gaps = 9/161 (5%)
Query: 25 QFSLSRICCEEEGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYY 84
Q L +C + E++ P+ P KD +YL SE YQ+ YG PVW Y
Sbjct: 26 QVPLQTLCTKAPSEEDSLSSVPISPYKDE--------PWKYLESEEYQERYGSRPVWADY 77
Query: 85 RRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILS 144
RRNHKG P++TRKTCIR + GNPCPICRD L + N+KLLEQF+ G I
Sbjct: 78 RRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFH 136
Query: 145 YMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDY 185
TGVC KQH +L AI +A++ GL+ + +P E D+
Sbjct: 137 APYTGVCVKQHKRLTQAIQKARDHGLLIYHIPQVEPRDLDF 177
>sp|Q767K8|RT18B_PIG 28S ribosomal protein S18b, mitochondrial OS=Sus scrofa GN=MRPS18B
PE=2 SV=1
Length = 258
Score = 127 bits (320), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 92/164 (56%), Gaps = 9/164 (5%)
Query: 25 QFSLSRICCEEEGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYY 84
Q L +C + +++ + P+ P KD +YL SE YQ YG PVW Y
Sbjct: 26 QVLLQTLCTKAPPEDDSLPQVPISPYKDE--------PWKYLDSEEYQNRYGSRPVWADY 77
Query: 85 RRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILS 144
RRNHKG P++TRK CIR +A GNPCPICRD+ L + N+KLLEQF+ G I
Sbjct: 78 RRNHKGGIPPQRTRKMCIRGNKVA-GNPCPICRDQKLHVDFRNVKLLEQFVCAHTGIIFH 136
Query: 145 YMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDYFPT 188
TGVC KQH KL AI +A++ GL+ + +P E D+ T
Sbjct: 137 APYTGVCMKQHKKLTQAIQKARDHGLLRYHIPQVEPRDLDFSTT 180
>sp|Q9Y676|RT18B_HUMAN 28S ribosomal protein S18b, mitochondrial OS=Homo sapiens
GN=MRPS18B PE=1 SV=1
Length = 258
Score = 127 bits (319), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 87/152 (57%), Gaps = 9/152 (5%)
Query: 25 QFSLSRICCEEEGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYY 84
Q L +C + E++ P+ P KD +YL SE YQ+ YG PVW Y
Sbjct: 26 QVPLQTLCTKAPSEEDSLSSVPISPYKDE--------PWKYLESEEYQERYGSRPVWADY 77
Query: 85 RRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILS 144
RRNHKG P++TRKTCIR + GNPCPICRD L + N+KLLEQF+ G I
Sbjct: 78 RRNHKGGVPPQRTRKTCIRRNKV-VGNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFY 136
Query: 145 YMKTGVCQKQHLKLLVAITQAKNKGLITFDLP 176
TGVC KQH +L AI +A++ GL+ + +P
Sbjct: 137 APYTGVCVKQHKRLTQAIQKARDHGLLIYHIP 168
>sp|Q99N84|RT18B_MOUSE 28S ribosomal protein S18b, mitochondrial OS=Mus musculus
GN=Mrps18b PE=2 SV=1
Length = 254
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 87/161 (54%), Gaps = 9/161 (5%)
Query: 25 QFSLSRICCEEEGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYY 84
Q L +C E+ PV P + +YL SE Y YG PVW Y
Sbjct: 24 QVPLQTLCTRGPPEEDAPSSLPVSPYESE--------PWKYLDSEEYHNRYGSRPVWADY 75
Query: 85 RRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILS 144
RRNHKG P++TRKTCIR+ +A GNPCPICRD L + N+KLLEQF+ G I
Sbjct: 76 RRNHKGGVPPQRTRKTCIRNNKVA-GNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFH 134
Query: 145 YMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDY 185
TGVC KQH KL AI +A+ GL+++ +P E D+
Sbjct: 135 APYTGVCMKQHKKLTQAIQKARECGLLSYYVPQVEPRDADF 175
>sp|P82918|RT18B_BOVIN 28S ribosomal protein S18b, mitochondrial OS=Bos taurus GN=MRPS18B
PE=1 SV=2
Length = 258
Score = 120 bits (300), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 89/161 (55%), Gaps = 9/161 (5%)
Query: 25 QFSLSRICCEEEGTEENKDEKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYY 84
Q L +C + +++ PV P +D +YL SE Y G PVW Y
Sbjct: 26 QVPLQTLCTKAPPEDDSLPPIPVSPYEDE--------PWKYLDSEEYHNRNGSRPVWADY 77
Query: 85 RRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILS 144
RRNHKG P++TRK CIR +A GNPCPICRD+ L + N+KLL+QF+ G I
Sbjct: 78 RRNHKGGIPPQRTRKMCIRGNKVA-GNPCPICRDQKLHVDFRNVKLLKQFVCAHTGIIFH 136
Query: 145 YMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDY 185
TGVC KQH KL AI +A++ GL+++ +P E D+
Sbjct: 137 APYTGVCMKQHKKLTQAIQKARDHGLLSYHIPQVEPRDLDF 177
>sp|Q9NVS2|RT18A_HUMAN 28S ribosomal protein S18a, mitochondrial OS=Homo sapiens
GN=MRPS18A PE=1 SV=1
Length = 196
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 113 CPICRDEYLIIHPYN---IKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKG 169
CPICR + + H YN + LL QFI P +G +L TG+CQ++H K+ + A G
Sbjct: 70 CPICR--WNLKHKYNYDDVLLLSQFIRP-HGGMLPRKITGLCQEEHRKIEECVKMAHRAG 126
Query: 170 LITFDLP 176
L+ P
Sbjct: 127 LLPNHRP 133
>sp|A0LAG7|RS18_MAGSM 30S ribosomal protein S18 OS=Magnetococcus sp. (strain MC-1)
GN=rpsR PE=3 SV=1
Length = 106
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
CP C D+ L I + K+L ++I+ G+++ TGVC KL VAI +A+N L+
Sbjct: 44 CPFCADKGLKIDYKDPKMLSRYITE-RGKMVPSRITGVCAPHQRKLSVAIKRARNIALLP 102
Query: 173 F 173
F
Sbjct: 103 F 103
>sp|A7NJF1|RS181_ROSCS 30S ribosomal protein S18 1 OS=Roseiflexus castenholzii (strain DSM
13941 / HLO8) GN=rpsR1 PE=3 SV=1
Length = 90
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
C C D+ ++ ++K L++ +S G+IL +TGVC + L VAI +A++ L+
Sbjct: 24 CAFCADKIRVVDYKDVKRLQRCMSE-RGKILPRRRTGVCARHQRSLTVAIKRARHMALLP 82
Query: 173 F 173
F
Sbjct: 83 F 83
>sp|A5UYQ5|RS182_ROSS1 30S ribosomal protein S18 2 OS=Roseiflexus sp. (strain RS-1)
GN=rpsR2 PE=3 SV=1
Length = 90
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
C C D+ ++ ++K L++ +S G+IL +TGVC + L VAI +A++ L+
Sbjct: 24 CMFCADQIRVVDYKDVKRLQRCMSE-RGKILPRRRTGVCARHQRSLTVAIKRARHMALLP 82
Query: 173 F 173
F
Sbjct: 83 F 83
>sp|C1F903|RS18_ACIC5 30S ribosomal protein S18 OS=Acidobacterium capsulatum (strain ATCC
51196 / DSM 11244 / JCM 7670) GN=rpsR PE=3 SV=1
Length = 105
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
C C ++ I +++LL+QF++ G+I+ TGVC +L AI QA+N L+
Sbjct: 42 CKFCTEKIDAIPYRDVRLLQQFVAE-RGKIVPRRLTGVCTTHQRRLTRAIKQARNIALLP 100
Query: 173 F 173
F
Sbjct: 101 F 101
>sp|P82919|RT18A_BOVIN 28S ribosomal protein S18a, mitochondrial OS=Bos taurus GN=MRPS18A
PE=1 SV=3
Length = 196
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 113 CPICRDEYLIIHPY---NIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKG 169
CPICR + + H Y ++ LL QFI P +G +L TG+CQ++H K+ + A G
Sbjct: 70 CPICR--WNLKHKYSYEDVLLLSQFIRP-HGGMLPRSITGLCQEEHRKIEECVKMAHRAG 126
Query: 170 LITFDLP 176
L+ P
Sbjct: 127 LLPNHRP 133
>sp|Q1IHW4|RS18_KORVE 30S ribosomal protein S18 OS=Koribacter versatilis (strain
Ellin345) GN=rpsR PE=3 SV=1
Length = 123
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
C C ++ I +++LL QF++ +G+I+ TGVC +L AI QA+N L+
Sbjct: 60 CKFCVEKIDAIDYKDVRLLGQFVAE-SGKIVPRRLTGVCTPHQRRLSDAIKQARNIALLP 118
Query: 173 F 173
F
Sbjct: 119 F 119
>sp|Q99N85|RT18A_MOUSE 28S ribosomal protein S18a, mitochondrial OS=Mus musculus
GN=Mrps18a PE=2 SV=1
Length = 196
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 113 CPICRDEYLIIHPY---NIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKG 169
CPICR + + H Y ++ LL QFI P G +L TG+C+++H K+ + A G
Sbjct: 70 CPICR--WNLKHKYTYEDVLLLSQFIRPYGG-MLPRRVTGLCREEHRKIEECVKMAHRAG 126
Query: 170 LITFDLP 176
L+ P
Sbjct: 127 LLPNHRP 133
>sp|Q8R2L5|RT18C_MOUSE 28S ribosomal protein S18c, mitochondrial OS=Mus musculus
GN=Mrps18c PE=2 SV=1
Length = 143
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 127 NIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI 171
N++LL QFISP G I TG+C K+ ++ AI +A+ G +
Sbjct: 77 NVQLLSQFISPFTGCIYGRHITGLCGKKQREITKAIKRAQKMGFM 121
>sp|P56353|RR18_CHLVU 30S ribosomal protein S18, chloroplastic OS=Chlorella vulgaris
GN=rps18 PE=3 SV=1
Length = 103
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 109 TGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNK 168
TG P Y+I + N +LL +FISP G+ILS TG+ KQ + AI +A+
Sbjct: 36 TGEPA----SRYIIDYK-NTQLLVKFISP-QGKILSRRATGLTAKQQRIMANAIKRARMG 89
Query: 169 GLITF 173
GL+ F
Sbjct: 90 GLVPF 94
>sp|P82917|RT18C_BOVIN 28S ribosomal protein S18c, mitochondrial OS=Bos taurus GN=MRPS18C
PE=1 SV=2
Length = 143
Score = 37.0 bits (84), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 127 NIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI 171
N++LL QFISP G I TG+C K+ ++ AI +A+ G +
Sbjct: 77 NVQLLSQFISPFTGCIYGRHITGLCGKKQREITKAIKRAQILGFM 121
>sp|C0R3A3|RS18_WOLWR 30S ribosomal protein S18 OS=Wolbachia sp. subsp. Drosophila
simulans (strain wRi) GN=rpsR PE=3 SV=1
Length = 91
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI 171
CP+ + I NI LL +F S G IL TGVC K+ KL +AI +A+ LI
Sbjct: 27 CPLAASKDEDIDYKNIDLLSKFTSDY-GRILPRRLTGVCAKKQRKLRLAIIRARFLALI 84
>sp|Q73GZ6|RS18_WOLPM 30S ribosomal protein S18 OS=Wolbachia pipientis wMel GN=rpsR PE=3
SV=1
Length = 91
Score = 36.6 bits (83), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI 171
CP+ + I NI LL +F S G IL TGVC K+ KL +AI +A+ LI
Sbjct: 27 CPLAASKDEDIDYKNIDLLSKFTSDY-GRILPRRLTGVCAKKQRKLRLAIIRARFLALI 84
>sp|Q9Y3D5|RT18C_HUMAN 28S ribosomal protein S18c, mitochondrial OS=Homo sapiens
GN=MRPS18C PE=1 SV=1
Length = 142
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 127 NIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKD 184
N++LL QF+SP G I TG+C K+ ++ AI +A+ G F YKD
Sbjct: 76 NVQLLSQFVSPFTGCIYGRHITGLCGKKQKEITKAIKRAQIMG-------FMPVTYKD 126
>sp|B1H013|RS18_UNCTG 30S ribosomal protein S18 OS=Uncultured termite group 1 bacterium
phylotype Rs-D17 GN=rpsR PE=3 SV=1
Length = 100
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
C C D+ I + N+ LL F++ G+ILS TG C K +L AI +A+ L+
Sbjct: 39 CRFCADKVEIDYK-NLSLLHTFVTE-KGKILSGRMTGTCAKHQRELDTAIKRARMIALLP 96
Query: 173 FDL 175
F +
Sbjct: 97 FTV 99
>sp|A9B461|RS18_HERA2 30S ribosomal protein S18 OS=Herpetosiphon aurantiacus (strain ATCC
23779 / DSM 785) GN=rpsR PE=3 SV=1
Length = 86
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 127 NIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITF 173
+IK L++ +S G+IL +TG C K KL VAI +A++ L+ F
Sbjct: 34 DIKRLQRMVSD-RGKILPRRRTGTCAKYQRKLNVAIKRARHLALLPF 79
>sp|Q39RR3|RS18_GEOMG 30S ribosomal protein S18 OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=rpsR PE=3 SV=1
Length = 106
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI 171
C C D+ L+I + ++L FI+ G+I+ +G C K ++ AI +A+N LI
Sbjct: 40 CRFCADKDLVIDYKDPRVLRSFITE-RGKIVPRRISGNCSKHQREITEAIKRARNIALI 97
>sp|Q4FMR6|RS18_PELUB 30S ribosomal protein S18 OS=Pelagibacter ubique (strain HTCC1062)
GN=rpsR PE=3 SV=1
Length = 92
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI 171
CP+ + NI+LL++++S NG+IL T V QK+ +L ++I +A+N LI
Sbjct: 35 CPLSAKGAPEVDYKNIRLLKKYMSE-NGKILPSRITNVSQKKQRELSLSIKRARNLALI 92
>sp|Q5GSD5|RS18_WOLTR 30S ribosomal protein S18 OS=Wolbachia sp. subsp. Brugia malayi
(strain TRS) GN=rpsR PE=3 SV=1
Length = 91
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI 171
CP+ + I N LL +F S G IL TGVC K+ KL +AI +A+ L+
Sbjct: 27 CPLATSQDEDIDYKNTDLLSRFTSDY-GRILPRRLTGVCAKKQRKLRLAIIRARFLALV 84
>sp|B2KEG0|RS18_ELUMP 30S ribosomal protein S18 OS=Elusimicrobium minutum (strain Pei191)
GN=rpsR PE=3 SV=1
Length = 113
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
C +C ++ + N + ++ F +G+ILS TG C K ++ A+ + +N ++
Sbjct: 49 CKLCAEKIENVDYKNFQFIKSFTMD-SGKILSRRITGTCAKHQRQIASAVKRDRNLAILP 107
Query: 173 FDLP 176
+ LP
Sbjct: 108 YSLP 111
>sp|Q4AA45|RS18_MYCHJ 30S ribosomal protein S18 OS=Mycoplasma hyopneumoniae (strain J /
ATCC 25934 / NCTC 10110) GN=rpsR PE=3 SV=2
Length = 87
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 112 PCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI 171
PC C + I +I++L++FI+ G+I TG C K KL +A+ +A+ L+
Sbjct: 13 PCQFCEAKLFYIDYKDIEVLQRFINTF-GKIQPSRITGNCAKHQRKLALAVKRARFVALL 71
Query: 172 TF 173
F
Sbjct: 72 PF 73
>sp|Q4A872|RS18_MYCH7 30S ribosomal protein S18 OS=Mycoplasma hyopneumoniae (strain 7448)
GN=rpsR PE=3 SV=2
Length = 87
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 112 PCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI 171
PC C + I +I++L++FI+ G+I TG C K KL +A+ +A+ L+
Sbjct: 13 PCQFCEAKLFYIDYKDIEVLQRFINTF-GKIQPSRITGNCAKHQRKLALAVKRARFVALL 71
Query: 172 TF 173
F
Sbjct: 72 PF 73
>sp|Q600Z8|RS18_MYCH2 30S ribosomal protein S18 OS=Mycoplasma hyopneumoniae (strain 232)
GN=rpsR PE=3 SV=1
Length = 87
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 112 PCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI 171
PC C + I +I++L++FI+ G+I TG C K KL +A+ +A+ L+
Sbjct: 13 PCQFCEAKLFYIDYKDIEVLQRFINTF-GKIQPSRITGNCAKHQRKLALAVKRARFVALL 71
Query: 172 TF 173
F
Sbjct: 72 PF 73
>sp|Q01QR5|RS18_SOLUE 30S ribosomal protein S18 OS=Solibacter usitatus (strain Ellin6076)
GN=rpsR PE=3 SV=1
Length = 99
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
C C ++ I+ ++K+L F++ G+I+ +GVC +L AI +A+N L+
Sbjct: 36 CRFCVEKIDDINYKDVKMLHAFVAE-RGKIVPRRISGVCAPHQRRLTDAIKKARNIALLP 94
Query: 173 FDLPF 177
F F
Sbjct: 95 FAASF 99
>sp|A9GXK6|RS18_SORC5 30S ribosomal protein S18 OS=Sorangium cellulosum (strain So ce56)
GN=rpsR PE=3 SV=1
Length = 106
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
C C D+ L+I + + L+ FIS G+++ +G C + K+ ++I +A+N L+
Sbjct: 43 CRYCADKALVIDYKDPQALKYFISE-RGKVVPRRISGNCARHQRKVTLSIKRARNIALLP 101
Query: 173 F 173
F
Sbjct: 102 F 102
>sp|A5UQW9|RS181_ROSS1 30S ribosomal protein S18 1 OS=Roseiflexus sp. (strain RS-1)
GN=rpsR1 PE=3 SV=1
Length = 88
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 131 LEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKD 184
L++F+ P G+IL +TG+ K KL +AI +A++ L LPF E + D
Sbjct: 37 LKRFLGP-TGKILPRRRTGLSAKMQRKLTIAIKRARHMAL----LPFVERSITD 85
>sp|Q047E6|RS18_LACGA 30S ribosomal protein S18 OS=Lactobacillus gasseri (strain ATCC
33323 / DSM 20243) GN=rpsR PE=3 SV=1
Length = 77
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 127 NIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITF 173
++ LL++FIS G+IL TG K KL VAI +A+ GL+ F
Sbjct: 28 DVDLLKRFISE-RGKILPRRVTGTSAKNQRKLTVAIKRARVMGLLPF 73
>sp|Q181R4|RS18_CLOD6 30S ribosomal protein S18 OS=Clostridium difficile (strain 630)
GN=rpsR PE=3 SV=1
Length = 75
Score = 34.3 bits (77), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
C C D+ I + + L+++I+ G+IL +G C K +L VAI +A+N L+
Sbjct: 13 CQFCADKNAKIDYKSTQRLQKYITE-RGKILPRRISGTCAKHQRELTVAIKRARNIALLP 71
Query: 173 FDL 175
+ L
Sbjct: 72 YTL 74
>sp|A5IY67|RS18_MYCAP 30S ribosomal protein S18 OS=Mycoplasma agalactiae (strain PG2)
GN=rpsR PE=3 SV=1
Length = 107
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI 171
C +C + N++ + +FIS + G+I ++ TG C + K+ AI +A+ LI
Sbjct: 17 CELCETNIEYVDYKNVEFITKFISGI-GQIKPHVSTGTCARHQRKVANAIKRARFMALI 74
>sp|Q74M26|RS18_LACJO 30S ribosomal protein S18 OS=Lactobacillus johnsonii (strain CNCM
I-12250 / La1 / NCC 533) GN=rpsR PE=3 SV=1
Length = 78
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 127 NIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITF 173
++ LL++FIS G+IL TG K KL VAI +A+ GL+ F
Sbjct: 29 DVDLLKRFISE-RGKILPRRVTGTSAKNQRKLTVAIKRARVMGLLPF 74
>sp|Q6AK01|RS18_DESPS 30S ribosomal protein S18 OS=Desulfotalea psychrophila (strain
LSv54 / DSM 12343) GN=rpsR PE=3 SV=1
Length = 81
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
C C D+ L+I ++K+L F+S G+I+ G C +L A+ +A+ L+
Sbjct: 16 CRFCADKELVIDYKDVKVLRNFVSE-RGKIIPRRIVGTCASHQRQLCEAVKRARQIALLP 74
Query: 173 FD 174
+
Sbjct: 75 YS 76
>sp|Q74FE3|RS18_GEOSL 30S ribosomal protein S18 OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=rpsR PE=3 SV=1
Length = 103
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI 171
C C D+ L+I + ++L FI+ G+I+ +G C ++ AI +A+N LI
Sbjct: 37 CRFCADKTLVIDYKDPRVLRSFITE-RGKIVPRRISGNCSAHQREITEAIKRARNIALI 94
>sp|A7NQU3|RS182_ROSCS 30S ribosomal protein S18 2 OS=Roseiflexus castenholzii (strain DSM
13941 / HLO8) GN=rpsR2 PE=3 SV=1
Length = 88
Score = 33.9 bits (76), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 131 LEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKD 184
L +F+ P G+IL +TG+ K +L +AI +A++ L LPF E + D
Sbjct: 37 LRRFLGP-TGKILPRRRTGLTAKMQRRLTIAIKRARHMAL----LPFVERSVTD 85
>sp|Q6MUK6|RS18_MYCMS 30S ribosomal protein S18 OS=Mycoplasma mycoides subsp. mycoides SC
(strain PG1) GN=rpsR PE=3 SV=1
Length = 75
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 127 NIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITF 173
+I+LL++FISP NG+IL TG K +L +AI +A+ L+ +
Sbjct: 27 DIELLKKFISP-NGQILPRRITGTSPKDQRQLALAIKRARQMALLPY 72
>sp|Q06FK5|RR18_PELHO 30S ribosomal protein S18, chloroplastic OS=Pelargonium hortorum
GN=rps18 PE=3 SV=1
Length = 141
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 127 NIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPF 177
NI L+ +FIS G+ILS V KQ +L +AI QA+ I LPF
Sbjct: 62 NISLIGRFIS-QQGKILSRRVNRVTLKQQRRLTIAIKQAR----ILSSLPF 107
>sp|A6M3L0|RS18_CLOB8 30S ribosomal protein S18 OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=rpsR PE=3 SV=1
Length = 86
Score = 33.5 bits (75), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
C C D+ I +I L ++++ G+IL +G C K +L +I +A+N L+
Sbjct: 24 CAFCVDKAEFIDYKDINKLRKYVTE-RGKILPRRISGTCAKHQRELTSSIKRARNIALLP 82
Query: 173 F 173
F
Sbjct: 83 F 83
>sp|A5N438|RS18_CLOK5 30S ribosomal protein S18 OS=Clostridium kluyveri (strain ATCC 8527
/ DSM 555 / NCIMB 10680) GN=rpsR PE=3 SV=1
Length = 84
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
C C D+ I +I L ++++ G+IL +G C K +L AI +A+N L+
Sbjct: 22 CAFCMDKSEFIDYKDINKLRKYVTE-RGKILPRRISGNCAKHQRELTRAIKRARNIALLP 80
Query: 173 F 173
F
Sbjct: 81 F 81
>sp|B9DXQ8|RS18_CLOK1 30S ribosomal protein S18 OS=Clostridium kluyveri (strain NBRC
12016) GN=rpsR PE=3 SV=1
Length = 84
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
C C D+ I +I L ++++ G+IL +G C K +L AI +A+N L+
Sbjct: 22 CAFCMDKSEFIDYKDINKLRKYVTE-RGKILPRRISGNCAKHQRELTRAIKRARNIALLP 80
Query: 173 F 173
F
Sbjct: 81 F 81
>sp|Q0P3N0|RR18_OSTTA 30S ribosomal protein S18, chloroplastic OS=Ostreococcus tauri
GN=rps18 PE=3 SV=1
Length = 70
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
PI E II N+ LL +FI+ G+IL TGV K+ +L AI QA+ G +
Sbjct: 9 SPIHAGE--IISYKNVDLLRRFITE-QGKILPRRLTGVTAKEQRQLAKAIKQARILGFLQ 65
Query: 173 F 173
F
Sbjct: 66 F 66
>sp|Q2ST89|RS18_MYCCT 30S ribosomal protein S18 OS=Mycoplasma capricolum subsp.
capricolum (strain California kid / ATCC 27343 / NCTC
10154) GN=rpsR PE=3 SV=1
Length = 75
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 127 NIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI 171
+++LL++FISP NG+IL TG K +L +AI +A+ L+
Sbjct: 27 DVELLKKFISP-NGQILPRRITGTSLKDQRQLALAIKRARQMALL 70
>sp|A5CY50|RS18_PELTS 30S ribosomal protein S18 OS=Pelotomaculum thermopropionicum
(strain DSM 13744 / JCM 10971 / SI) GN=rpsR PE=3 SV=1
Length = 76
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
C C D+ ++ +++ L+++I+ G+IL +G C K L AI +A+N L+
Sbjct: 14 CNFCVDKAEVVDYKDVQRLKKYITE-RGKILPRRISGNCAKHQRLLTTAIKRARNIALLP 72
Query: 173 F 173
F
Sbjct: 73 F 73
>sp|Q97CX4|RS18_CLOAB 30S ribosomal protein S18 OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=rpsR PE=3 SV=1
Length = 90
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
C C ++ I +I L ++++ G+IL +G C K +L +AI +A+N L+
Sbjct: 28 CSFCMEKSESIDYKDINKLRKYVTE-RGKILPRRISGNCAKHQRELTIAIKRARNIALLP 86
Query: 173 F 173
F
Sbjct: 87 F 87
>sp|A0PX89|RS18_CLONN 30S ribosomal protein S18 OS=Clostridium novyi (strain NT) GN=rpsR
PE=3 SV=1
Length = 78
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
C C D+ I ++ L ++++ G+IL +G C K +L +AI +A+N L+
Sbjct: 16 CAFCADKSSSIDYKDVNKLRKYVTE-RGKILPRRISGNCAKHQRELTLAIKRARNVALLP 74
Query: 173 F 173
F
Sbjct: 75 F 75
>sp|Q1WVN7|RS18_LACS1 30S ribosomal protein S18 OS=Lactobacillus salivarius (strain
UCC118) GN=rpsR PE=3 SV=1
Length = 78
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 130 LLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITF 173
LL +FIS G+IL TG K KL VAI +A+ GL+ F
Sbjct: 32 LLRRFISE-RGKILPRRVTGTSAKNQRKLTVAIKRARIMGLLPF 74
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,102,050
Number of Sequences: 539616
Number of extensions: 3377851
Number of successful extensions: 7506
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 7477
Number of HSP's gapped (non-prelim): 150
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)