Query psy1551
Match_columns 190
No_of_seqs 192 out of 858
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 23:09:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i1m_R 30S ribosomal protein S 100.0 1.3E-30 4.5E-35 190.4 5.4 68 109-177 7-74 (75)
2 2vqe_R 30S ribosomal protein S 100.0 3E-30 1E-34 193.3 6.4 70 108-178 17-86 (88)
3 3bbn_R Ribosomal protein S18; 99.9 8.9E-29 3E-33 190.3 1.7 76 107-185 14-91 (103)
4 3r8n_R 30S ribosomal protein S 99.9 4.9E-27 1.7E-31 162.7 5.7 55 122-177 1-55 (55)
5 3nph_B Phycobilisome 32.1 kDa 39.4 12 0.00042 30.0 1.7 26 64-91 115-140 (148)
6 2ky4_A Phycobilisome linker po 37.0 13 0.00045 29.8 1.6 23 64-88 118-140 (149)
7 3osj_A Phycobilisome LCM core- 36.5 14 0.00047 29.7 1.6 18 64-81 126-143 (147)
8 3ohw_B Phycobilisome LCM core- 35.5 15 0.00053 29.4 1.7 18 64-81 127-144 (148)
9 2csy_A Zinc finger protein 183 32.2 23 0.00078 23.5 1.9 28 110-137 49-76 (81)
10 3pru_C Phycobilisome 32.1 kDa 31.3 21 0.00073 28.8 1.9 18 64-81 120-137 (154)
11 3u5e_e 60S ribosomal protein L 21.9 2.8E+02 0.0095 21.6 6.7 39 126-171 77-118 (130)
No 1
>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...
Probab=99.96 E-value=1.3e-30 Score=190.36 Aligned_cols=68 Identities=22% Similarity=0.287 Sum_probs=53.7
Q ss_pred CCCCCccccCCccccCcccHHHHhhcCCCCCCeecccccccCCHHHHHHHHHHHHHHHHccccCcccCC
Q psy1551 109 TGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPF 177 (190)
Q Consensus 109 ~~npCpiCrd~~~~IDYKNV~LL~qFIs~~tGkILprr~TGlC~KqQRkL~kAIKrAR~lGLLPf~vpf 177 (190)
.+++|+||++++..|||||++||++|||+ +|+|+||++||||+||||+|++|||+||.+|||||+.++
T Consensus 7 r~k~C~fc~~~~~~iDYknv~lL~~Fis~-~GkIlprr~TGlc~k~QR~l~~AIKrAR~~gLlP~~~~h 74 (75)
T 3i1m_R 7 RRKFCRFTAEGVQEIDYKDIATLKNYITE-SGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYTDRH 74 (75)
T ss_dssp -------------CCSTTCHHHHGGGBCT-TCCBCCHHHHCCCHHHHHHHHHHHHHHHTTTSSCSSSCC
T ss_pred CCCCCCcccCCCCcCCcCCHHHHHHHcCc-CCCCcCccccccCHHHHHHHHHHHHHHHHhccCCcCCCC
Confidence 46899999999999999999999999999 799999999999999999999999999999999999875
No 2
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R 1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R* 1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U* 1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Probab=99.96 E-value=3e-30 Score=193.28 Aligned_cols=70 Identities=24% Similarity=0.363 Sum_probs=66.7
Q ss_pred cCCCCCccccCCccccCcccHHHHhhcCCCCCCeecccccccCCHHHHHHHHHHHHHHHHccccCcccCCc
Q psy1551 108 ATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFR 178 (190)
Q Consensus 108 ~~~npCpiCrd~~~~IDYKNV~LL~qFIs~~tGkILprr~TGlC~KqQRkL~kAIKrAR~lGLLPf~vpf~ 178 (190)
..+++|+||.+++..|||||++||+||||+ +|+|+||++||||+||||+|++|||+||+||||||+.++.
T Consensus 17 ~r~k~C~~c~~~~~~iDYKnv~lL~~Fise-~GkIlprriTGlc~k~QR~l~~AIKrAR~lgLLP~~~~~v 86 (88)
T 2vqe_R 17 SRKAKVKATLGEFDLRDYRNVEVLKRFLSE-TGKILPRRRTGLSGKEQRILAKTIKRARILGLLPFTEKLV 86 (88)
T ss_dssp CCSCCTTTSCCCEETTCTTCHHHHGGGBCS-SSCBCCHHHHCCCHHHHHHHHHHHHHHHHTTSSCSCCCEE
T ss_pred CCCCCCCccCCCCCcCCcCCHHHHHHHccc-CCCCCchhhcCCCHHHHHHHHHHHHHHHHHhcCCccHhhc
Confidence 468899999999999999999999999999 7999999999999999999999999999999999998763
No 3
>3bbn_R Ribosomal protein S18; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.94 E-value=8.9e-29 Score=190.30 Aligned_cols=76 Identities=26% Similarity=0.251 Sum_probs=56.0
Q ss_pred ecCCCCCccccCCccccCcccHHHHhhcCCCCCCeecccccccCCHHHHHHHHHHHHHHHHccccCcccCCc--ccccCC
Q psy1551 107 IATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFR--EYNYKD 184 (190)
Q Consensus 107 ~~~~npCpiCrd~~~~IDYKNV~LL~qFIs~~tGkILprr~TGlC~KqQRkL~kAIKrAR~lGLLPf~vpf~--~ydy~~ 184 (190)
...+++||||.. ..||||||+||++|||+ +|+|+||++||||+||||+|++|||+||.||||||+.+.. .|+++|
T Consensus 14 ~~rr~~cpi~~~--~~IDYKnv~lL~~FIse-~GKIlpRRiTGlcaK~QR~l~~AIKrAR~laLLPy~~~~~~~~f~~~e 90 (103)
T 3bbn_R 14 SFRRRLPPIQSG--DRIDYRNMSLISRFISE-QGKILSRRVNRLTLKQQRLITSAIKQARILSLLPFLNNEKEKQFERTE 90 (103)
T ss_dssp -----------C--CSSCCSCHHHHTTTSCS-SSSCCCSSSTTCCTTTTTTTHHHHHHHTTTTSSCTTCCCC--------
T ss_pred cccCCCCCcCCC--CcCCcCCHHHHHHHhcc-CCCCcCccccCCCHHHHHHHHHHHHHHHHHhCCCcccCcchhhhhhhh
Confidence 346889999984 47999999999999999 7999999999999999999999999999999999999988 788876
Q ss_pred c
Q psy1551 185 Y 185 (190)
Q Consensus 185 y 185 (190)
-
T Consensus 91 ~ 91 (103)
T 3bbn_R 91 S 91 (103)
T ss_dssp -
T ss_pred c
Confidence 4
No 4
>3r8n_R 30S ribosomal protein S18; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_R 3fih_R* 3iy8_R 3j18_R* 2wwl_R 3oar_R 3oaq_R 3ofb_R 3ofa_R 3ofp_R 3ofx_R 3ofy_R 3ofo_R 3r8o_R 4a2i_R 4gd1_R 4gd2_R
Probab=99.93 E-value=4.9e-27 Score=162.71 Aligned_cols=55 Identities=25% Similarity=0.321 Sum_probs=52.3
Q ss_pred ccCcccHHHHhhcCCCCCCeecccccccCCHHHHHHHHHHHHHHHHccccCcccCC
Q psy1551 122 IIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPF 177 (190)
Q Consensus 122 ~IDYKNV~LL~qFIs~~tGkILprr~TGlC~KqQRkL~kAIKrAR~lGLLPf~vpf 177 (190)
.|||||++||++|||+ +|+|+||++||+|+||||+|++|||+||.+|||||+..+
T Consensus 1 ~iDYknv~lL~~Fis~-~GkIlprr~TGlc~k~QR~l~~AIKrAR~~~LlP~~~~h 55 (55)
T 3r8n_R 1 EIDYKDIATLKNYITE-SGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYTDRH 55 (55)
T ss_dssp CCCTTCHHHHGGGBCT-TCCBCCHHHHCCCHHHHHHHHHHHHHHHHTTSSCSCTTC
T ss_pred CCCccCHHHHHHHcCC-CCCCcCccccccCHHHHHHHHHHHHHHHHhccCCccCCC
Confidence 4899999999999999 799999999999999999999999999999999998653
No 5
>3nph_B Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 2; PFAM00427 domain, linker protein, phycobiliprotein, photosyn; 1.85A {Synechocystis SP} PDB: 2l3w_A
Probab=39.35 E-value=12 Score=30.01 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=17.8
Q ss_pred hhhccHHHHhhhCCCcccccccccCCCC
Q psy1551 64 RYLASEAYQKCYGDEPVWKYYRRNHKGM 91 (190)
Q Consensus 64 ~Yl~S~~y~~~Yg~~pvw~~YRRNhKG~ 91 (190)
.|++|++|.+.+|++-|- |.|..+-+
T Consensus 115 slidS~EY~~~FGedtVP--Y~R~~~~~ 140 (148)
T 3nph_B 115 SYIDSVEYTENFGDWVVP--YFRGFATQ 140 (148)
T ss_dssp HHHTSHHHHHHTTTTBCC--CCC-----
T ss_pred HHhCcHHHHHHcCCCCCC--eecCccch
Confidence 489999999999999774 55555443
No 6
>2ky4_A Phycobilisome linker polypeptide; NESG, PSI, structural genomics, protein structure initiative northeast structural genomics consortium; NMR {Nostoc SP}
Probab=37.04 E-value=13 Score=29.80 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=18.3
Q ss_pred hhhccHHHHhhhCCCcccccccccC
Q psy1551 64 RYLASEAYQKCYGDEPVWKYYRRNH 88 (190)
Q Consensus 64 ~Yl~S~~y~~~Yg~~pvw~~YRRNh 88 (190)
.|++|++|.+.+|++-|- |.|..
T Consensus 118 slidS~EY~~~FGedtVP--Y~R~~ 140 (149)
T 2ky4_A 118 ALVNSQEYNEVFGEDTVP--YRRFP 140 (149)
T ss_dssp HHHSSHHHHHHSCSSBCC--CCCTT
T ss_pred HHhCcHHHHHHcCCCCCC--cccCC
Confidence 589999999999999774 44443
No 7
>3osj_A Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.30A {Synechocystis SP} PDB: 2l06_A
Probab=36.49 E-value=14 Score=29.66 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=15.8
Q ss_pred hhhccHHHHhhhCCCccc
Q psy1551 64 RYLASEAYQKCYGDEPVW 81 (190)
Q Consensus 64 ~Yl~S~~y~~~Yg~~pvw 81 (190)
.|++|++|.+.+|++-|-
T Consensus 126 slidS~EY~~~FGedtVP 143 (147)
T 3osj_A 126 ALVDSQEYADYFGEETVP 143 (147)
T ss_dssp HHHHSHHHHHHTTTTBCC
T ss_pred HHhCcHHHHHHcCCCCCC
Confidence 589999999999998663
No 8
>3ohw_B Phycobilisome LCM core-membrane linker polypeptid; structural genomics, PSI-biology; 2.70A {Synechocystis SP}
Probab=35.51 E-value=15 Score=29.39 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=15.8
Q ss_pred hhhccHHHHhhhCCCccc
Q psy1551 64 RYLASEAYQKCYGDEPVW 81 (190)
Q Consensus 64 ~Yl~S~~y~~~Yg~~pvw 81 (190)
.|++|++|.+.+|++-|-
T Consensus 127 slidS~EY~~~FGedtVP 144 (148)
T 3ohw_B 127 AMVNGMEYLQTFGEDTVP 144 (148)
T ss_dssp HHHTSHHHHHHTCSSSCC
T ss_pred HHhCcHHHHHHcCCCCCC
Confidence 589999999999998764
No 9
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.20 E-value=23 Score=23.51 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=20.0
Q ss_pred CCCCccccCCccccCcccHHHHhhcCCC
Q psy1551 110 GNPCPICRDEYLIIHPYNIKLLEQFISP 137 (190)
Q Consensus 110 ~npCpiCrd~~~~IDYKNV~LL~qFIs~ 137 (190)
...||+|+..+..+-..|..|+.+|-..
T Consensus 49 ~~~CP~Cr~~~~~~~~~~~~l~~~~~~~ 76 (81)
T 2csy_A 49 TPRCYICDQPTGGIFNPAKELMAKLQKS 76 (81)
T ss_dssp CSBCSSSCCBCCSCCEECHHHHHHHSSS
T ss_pred CCcCCCcCccccccCCcHHHHHHHHHhh
Confidence 5679999988654444677787777654
No 10
>3pru_C Phycobilisome 32.1 kDa linker polypeptide, phycoc associated, ROD 1; structural genomics, PSI-biology; 2.68A {Synechocystis SP} PDB: 2l8v_A
Probab=31.29 E-value=21 Score=28.77 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=16.2
Q ss_pred hhhccHHHHhhhCCCccc
Q psy1551 64 RYLASEAYQKCYGDEPVW 81 (190)
Q Consensus 64 ~Yl~S~~y~~~Yg~~pvw 81 (190)
.|++|++|.+.+|++-|-
T Consensus 120 slidS~EY~~~FGedtVP 137 (154)
T 3pru_C 120 SYIDSVEYQENFGENIVP 137 (154)
T ss_dssp HHHHSHHHHHHTTTTBCC
T ss_pred HhhCcHHHHHHcCCCCCC
Confidence 589999999999999775
No 11
>3u5e_e 60S ribosomal protein L32, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_h 1s1i_0 3izs_h 3o5h_b 3o58_b 3u5i_e 4b6a_e 3jyw_0
Probab=21.88 E-value=2.8e+02 Score=21.61 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=25.8
Q ss_pred ccHHHHhhcCCC---CCCeecccccccCCHHHHHHHHHHHHHHHHcccc
Q psy1551 126 YNIKLLEQFISP---VNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLI 171 (190)
Q Consensus 126 KNV~LL~qFIs~---~tGkILprr~TGlC~KqQRkL~kAIKrAR~lGLL 171 (190)
.||+=|+-.+.. +...| -..++.+.-..| +++|.++|+=
T Consensus 77 ~NvkeLe~Llm~n~~~~aeI----Ah~Vs~rkR~~I---verA~ql~ir 118 (130)
T 3u5e_e 77 ANVKDLETLTMHTKTYAAEI----AHNISAKNRVVI---LARAKALGIK 118 (130)
T ss_dssp SSHHHHGGGTTCTTTEEEEE----CTTCCHHHHHHH---HHHHHHHTCC
T ss_pred CCHHHHHHHhcCCcccEEEE----ecccccccHHHH---HHHHHHhCCc
Confidence 477777776532 22333 566788777665 6889998864
Done!