Your job contains 1 sequence.
>psy1551
MKEMETAPVIPESEVWDVWIPPQRQFSLSRICCEEEGTEENKDEKPVDPAKDRRNPVPVE
ISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEY
LIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREY
NYKDYFPTSV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1551
(190 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0032849 - symbol:mRpS18B "mitochondrial ribosomal ... 513 3.2e-49 1
UNIPROTKB|E2R2K6 - symbol:MRPS18B "Uncharacterized protei... 315 3.1e-28 1
UNIPROTKB|Q9Y676 - symbol:MRPS18B "28S ribosomal protein ... 311 8.2e-28 1
UNIPROTKB|Q767K8 - symbol:MRPS18B "28S ribosomal protein ... 311 8.2e-28 1
UNIPROTKB|F1N059 - symbol:MRPS18B "28S ribosomal protein ... 310 1.0e-27 1
RGD|1302998 - symbol:Mrps18b "mitochondrial ribosomal pro... 308 1.7e-27 1
MGI|MGI:1914223 - symbol:Mrps18b "mitochondrial ribosomal... 304 4.5e-27 1
UNIPROTKB|P82918 - symbol:MRPS18B "28S ribosomal protein ... 301 9.4e-27 1
ZFIN|ZDB-GENE-050417-278 - symbol:mrps18b "mitochondrial ... 290 1.4e-25 1
WB|WBGene00011759 - symbol:mrps-18B species:6239 "Caenorh... 215 1.2e-17 1
UNIPROTKB|B4DFG6 - symbol:MRPS18B "28S ribosomal protein ... 204 1.8e-16 1
UNIPROTKB|Q5STN0 - symbol:MRPS18B "28S ribosomal protein ... 148 3.9e-14 2
UNIPROTKB|F1RRH6 - symbol:F1RRH6 "Uncharacterized protein... 113 2.5e-05 1
UNIPROTKB|F1SIU4 - symbol:MRPS18A "Uncharacterized protei... 113 2.5e-05 1
UNIPROTKB|Q9NVS2 - symbol:MRPS18A "28S ribosomal protein ... 105 0.00032 1
>FB|FBgn0032849 [details] [associations]
symbol:mRpS18B "mitochondrial ribosomal protein S18B"
species:7227 "Drosophila melanogaster" [GO:0006412 "translation"
evidence=ISS] [GO:0005763 "mitochondrial small ribosomal subunit"
evidence=ISS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS] InterPro:IPR001648 Pfam:PF01084 ProDom:PD002239
EMBL:AE014134 GO:GO:0006412 GO:GO:0003735 GO:GO:0005763
Gene3D:4.10.640.10 SUPFAM:SSF46911 CTD:28973 eggNOG:NOG288650
KO:K16174 GeneTree:ENSGT00390000010554 EMBL:AY075438
RefSeq:NP_523606.1 RefSeq:NP_724248.1 UniGene:Dm.2746 SMR:Q9VIN9
MINT:MINT-1660965 EnsemblMetazoa:FBtr0081338
EnsemblMetazoa:FBtr0081339 GeneID:35299 KEGG:dme:Dmel_CG10757
UCSC:CG10757-RA FlyBase:FBgn0032849 InParanoid:Q9VIN9 OMA:KTGLCQK
OrthoDB:EOG46HDT0 GenomeRNAi:35299 NextBio:792849 Uniprot:Q9VIN9
Length = 204
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 89/139 (64%), Positives = 115/139 (82%)
Query: 48 DPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRSGII 107
DP KDR P+PVE SIRYL S AY++ YG++ VW YRRNHKGM+AP+KTRKTCIR I
Sbjct: 59 DP-KDRSKPIPVETSIRYLKSAAYKQTYGEDFVWTQYRRNHKGMYAPRKTRKTCIRQNRI 117
Query: 108 ATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKN 167
+TGNPCPICRDEYL++ N +LLEQFISP +G++LSY KTG+CQK HL+L+VA+ QA++
Sbjct: 118 STGNPCPICRDEYLVLDYRNTELLEQFISPHSGDVLSYSKTGLCQKSHLRLMVAVQQARD 177
Query: 168 KGLITFDLPFREYNYKDYF 186
G +T+D+PFREY+Y +Y+
Sbjct: 178 SGYLTYDVPFREYDYSEYY 196
>UNIPROTKB|E2R2K6 [details] [associations]
symbol:MRPS18B "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR001648 Pfam:PF01084 ProDom:PD002239
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:4.10.640.10 SUPFAM:SSF46911 CTD:28973 KO:K16174 OMA:RPVWADY
GeneTree:ENSGT00390000010554 EMBL:AAEX03008197 RefSeq:XP_532057.2
Ensembl:ENSCAFT00000000648 GeneID:474827 KEGG:cfa:474827
NextBio:20850772 Uniprot:E2R2K6
Length = 257
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 70/145 (48%), Positives = 86/145 (59%)
Query: 49 PAKDRRNPVPVEI----SIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRS 104
P +D PVP+ +YL SE YQ Y PVW YRRNHKG P++TRKTCIR
Sbjct: 38 PEEDSLPPVPISPYKNEPWKYLDSEEYQNRYSTRPVWADYRRNHKGGIPPQRTRKTCIRR 97
Query: 105 GIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQ 164
+A GNPCPICRD L + N+KLLEQF+ G I TGVC KQH KL AI +
Sbjct: 98 DKVA-GNPCPICRDHKLHVDFRNVKLLEQFVCAHTGVIFHAPYTGVCMKQHKKLTQAIQK 156
Query: 165 AKNKGLITFDLPFREYNYKDYFPTS 189
A++ GL+++ +P E D F TS
Sbjct: 157 ARDHGLLSYHIPQVEPRDLD-FSTS 180
>UNIPROTKB|Q9Y676 [details] [associations]
symbol:MRPS18B "28S ribosomal protein S18b, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=NAS] [GO:0006412 "translation" evidence=NAS]
[GO:0005763 "mitochondrial small ribosomal subunit" evidence=NAS]
InterPro:IPR001648 Pfam:PF01084 ProDom:PD002239 PROSITE:PS00057
EMBL:CH471081 GO:GO:0006412 EMBL:AL662800 EMBL:AL662825
EMBL:BX119957 EMBL:CR753328 GO:GO:0003735 EMBL:AL845353
EMBL:AL732442 GO:GO:0005763 EMBL:BX248507 Gene3D:4.10.640.10
SUPFAM:SSF46911 CTD:28973 eggNOG:NOG288650 HOGENOM:HOG000039992
HOVERGEN:HBG054347 KO:K16174 OrthoDB:EOG4WSWBX EMBL:AF100761
EMBL:AF151017 EMBL:AL050361 EMBL:AB110933 EMBL:AB110934
EMBL:AB202094 EMBL:BC005373 IPI:IPI00022316 RefSeq:NP_054765.1
UniGene:Hs.655329 ProteinModelPortal:Q9Y676 SMR:Q9Y676
DIP:DIP-29894N IntAct:Q9Y676 MINT:MINT-1448435 PhosphoSite:Q9Y676
DMDM:24212203 PaxDb:Q9Y676 PeptideAtlas:Q9Y676 PRIDE:Q9Y676
Ensembl:ENST00000259873 Ensembl:ENST00000327800
Ensembl:ENST00000412451 Ensembl:ENST00000426945
Ensembl:ENST00000430402 Ensembl:ENST00000451032
Ensembl:ENST00000454427 GeneID:28973 KEGG:hsa:28973 UCSC:uc003nqo.2
GeneCards:GC06P030585 HGNC:HGNC:14516 MIM:611982 neXtProt:NX_Q9Y676
PharmGKB:PA31004 InParanoid:Q9Y676 OMA:RPVWADY PhylomeDB:Q9Y676
ChiTaRS:MRPS18B GenomeRNAi:28973 NextBio:51843 ArrayExpress:Q9Y676
Bgee:Q9Y676 CleanEx:HS_MRPS18B Genevestigator:Q9Y676
GermOnline:ENSG00000204568 Uniprot:Q9Y676
Length = 258
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 72/165 (43%), Positives = 89/165 (53%)
Query: 25 QFSLSRICCXXXXXXXXXXXKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYY 84
Q L +C P+ P KD P +YL SE YQ+ YG PVW Y
Sbjct: 26 QVPLQTLCTKAPSEEDSLSSVPISPYKDE--PW------KYLESEEYQERYGSRPVWADY 77
Query: 85 RRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILS 144
RRNHKG P++TRKTCIR + GNPCPICRD L + N+KLLEQF+ G I
Sbjct: 78 RRNHKGGVPPQRTRKTCIRRNKVV-GNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFY 136
Query: 145 YMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDYFPTS 189
TGVC KQH +L AI +A++ GL+ + +P E D F TS
Sbjct: 137 APYTGVCVKQHKRLTQAIQKARDHGLLIYHIPQVEPRDLD-FSTS 180
>UNIPROTKB|Q767K8 [details] [associations]
symbol:MRPS18B "28S ribosomal protein S18b, mitochondrial"
species:9823 "Sus scrofa" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR001648 Pfam:PF01084 ProDom:PD002239
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 EMBL:AB113357
GO:GO:0003735 EMBL:AB113356 Gene3D:4.10.640.10 SUPFAM:SSF46911
CTD:28973 eggNOG:NOG288650 HOGENOM:HOG000039992 HOVERGEN:HBG054347
KO:K16174 OrthoDB:EOG4WSWBX OMA:RPVWADY
GeneTree:ENSGT00390000010554 RefSeq:NP_001116612.1 UniGene:Ssc.3787
ProteinModelPortal:Q767K8 STRING:Q767K8 Ensembl:ENSSSCT00000027559
GeneID:100144465 KEGG:ssc:100144465 ArrayExpress:Q767K8
Uniprot:Q767K8
Length = 258
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 71/164 (43%), Positives = 88/164 (53%)
Query: 25 QFSLSRICCXXXXXXXXXXXKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYY 84
Q L +C P+ P KD P +YL SE YQ YG PVW Y
Sbjct: 26 QVLLQTLCTKAPPEDDSLPQVPISPYKDE--PW------KYLDSEEYQNRYGSRPVWADY 77
Query: 85 RRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILS 144
RRNHKG P++TRK CIR +A GNPCPICRD+ L + N+KLLEQF+ G I
Sbjct: 78 RRNHKGGIPPQRTRKMCIRGNKVA-GNPCPICRDQKLHVDFRNVKLLEQFVCAHTGIIFH 136
Query: 145 YMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKDYFPT 188
TGVC KQH KL AI +A++ GL+ + +P E D+ T
Sbjct: 137 APYTGVCMKQHKKLTQAIQKARDHGLLRYHIPQVEPRDLDFSTT 180
>UNIPROTKB|F1N059 [details] [associations]
symbol:MRPS18B "28S ribosomal protein S18b, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR001648 Pfam:PF01084 ProDom:PD002239
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:4.10.640.10 SUPFAM:SSF46911 UniGene:Bt.88532 OMA:RPVWADY
GeneTree:ENSGT00390000010554 EMBL:DAAA02055402 IPI:IPI00826859
Ensembl:ENSBTAT00000009107 NextBio:20927900 Uniprot:F1N059
Length = 258
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 68/145 (46%), Positives = 86/145 (59%)
Query: 49 PAKDRRNPVPV----EISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRS 104
P D P+PV + +YL SE Y YG PVW YRRNHKG P++TRK CIR
Sbjct: 38 PEDDSLPPIPVSPYEDEPWKYLDSEEYHNRYGSRPVWADYRRNHKGGIPPQRTRKMCIRG 97
Query: 105 GIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQ 164
+A GNPCPICRD+ L + N+KLL+QF+ G I TGVC KQH KL AI +
Sbjct: 98 NKVA-GNPCPICRDQKLHVDFRNVKLLKQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQK 156
Query: 165 AKNKGLITFDLPFREYNYKDYFPTS 189
A++ GL+++ +P E D F TS
Sbjct: 157 ARDHGLLSYHIPQVEPRDLD-FSTS 180
>RGD|1302998 [details] [associations]
symbol:Mrps18b "mitochondrial ribosomal protein S18B"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR001648 Pfam:PF01084
ProDom:PD002239 RGD:1302998 GO:GO:0005739 GO:GO:0006412
GO:GO:0005840 EMBL:BX883048 GO:GO:0003735 Gene3D:4.10.640.10
SUPFAM:SSF46911 CTD:28973 eggNOG:NOG288650 HOGENOM:HOG000039992
HOVERGEN:HBG054347 KO:K16174 OrthoDB:EOG4WSWBX OMA:RPVWADY
GeneTree:ENSGT00390000010554 EMBL:BC166875 IPI:IPI00214495
RefSeq:NP_997699.2 UniGene:Rn.114 STRING:Q6MG10
Ensembl:ENSRNOT00000001058 GeneID:294230 KEGG:rno:294230
UCSC:RGD:1302998 InParanoid:Q6MG10 NextBio:637791
Genevestigator:Q6MG10 Uniprot:Q6MG10
Length = 253
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 65/132 (49%), Positives = 81/132 (61%)
Query: 49 PAKDRRNPVPVEI----SIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRS 104
P +D + +PV +YL SE YQ YG PVW YRRNHKG P++TRKTCIR
Sbjct: 35 PPEDASSSLPVSPFENEPWKYLDSEEYQNRYGSRPVWADYRRNHKGGVPPQRTRKTCIRK 94
Query: 105 GIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQ 164
+A GNPCPICRD L + N+KLLEQF+ G I TGVC KQH KL AI +
Sbjct: 95 DKVA-GNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQK 153
Query: 165 AKNKGLITFDLP 176
A+ GL+++ +P
Sbjct: 154 AREYGLLSYYVP 165
>MGI|MGI:1914223 [details] [associations]
symbol:Mrps18b "mitochondrial ribosomal protein S18B"
species:10090 "Mus musculus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR001648
Pfam:PF01084 ProDom:PD002239 PROSITE:PS00057 MGI:MGI:1914223
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:4.10.640.10 SUPFAM:SSF46911 CTD:28973 eggNOG:NOG288650
HOGENOM:HOG000039992 HOVERGEN:HBG054347 KO:K16174 OrthoDB:EOG4WSWBX
OMA:RPVWADY EMBL:AB049954 EMBL:AK002554 EMBL:AK010250 EMBL:AK166597
EMBL:BC021752 IPI:IPI00118193 IPI:IPI00223360 RefSeq:NP_080154.1
UniGene:Mm.29484 UniGene:Mm.440735 ProteinModelPortal:Q99N84
SMR:Q99N84 STRING:Q99N84 PhosphoSite:Q99N84 PaxDb:Q99N84
PRIDE:Q99N84 Ensembl:ENSMUST00000025305 Ensembl:ENSMUST00000113782
GeneID:66973 KEGG:mmu:66973 UCSC:uc008cjg.1
GeneTree:ENSGT00390000010554 InParanoid:Q99N84 NextBio:323179
Bgee:Q99N84 CleanEx:MM_MRPS18B Genevestigator:Q99N84
GermOnline:ENSMUSG00000024436 Uniprot:Q99N84
Length = 254
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 62/122 (50%), Positives = 77/122 (63%)
Query: 64 RYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLII 123
+YL SE Y YG PVW YRRNHKG P++TRKTCIR+ +A GNPCPICRD L +
Sbjct: 55 KYLDSEEYHNRYGSRPVWADYRRNHKGGVPPQRTRKTCIRNNKVA-GNPCPICRDHKLHV 113
Query: 124 HPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYK 183
N+KLLEQF+ G I TGVC KQH KL AI +A+ GL+++ +P E
Sbjct: 114 DFRNVKLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARECGLLSYYVPQVEPRDA 173
Query: 184 DY 185
D+
Sbjct: 174 DF 175
>UNIPROTKB|P82918 [details] [associations]
symbol:MRPS18B "28S ribosomal protein S18b, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR001648 Pfam:PF01084 ProDom:PD002239
PROSITE:PS00057 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:4.10.640.10 SUPFAM:SSF46911 EMBL:BC109913
IPI:IPI00687125 RefSeq:NP_001033613.1 UniGene:Bt.88532
ProteinModelPortal:P82918 IntAct:P82918 GeneID:510824
KEGG:bta:510824 CTD:28973 eggNOG:NOG288650 HOGENOM:HOG000039992
HOVERGEN:HBG054347 InParanoid:P82918 KO:K16174 OrthoDB:EOG4WSWBX
NextBio:20869635 Uniprot:P82918
Length = 258
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 67/145 (46%), Positives = 85/145 (58%)
Query: 49 PAKDRRNPVPV----EISIRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRS 104
P D P+PV + +YL SE Y G PVW YRRNHKG P++TRK CIR
Sbjct: 38 PEDDSLPPIPVSPYEDEPWKYLDSEEYHNRNGSRPVWADYRRNHKGGIPPQRTRKMCIRG 97
Query: 105 GIIATGNPCPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQ 164
+A GNPCPICRD+ L + N+KLL+QF+ G I TGVC KQH KL AI +
Sbjct: 98 NKVA-GNPCPICRDQKLHVDFRNVKLLKQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQK 156
Query: 165 AKNKGLITFDLPFREYNYKDYFPTS 189
A++ GL+++ +P E D F TS
Sbjct: 157 ARDHGLLSYHIPQVEPRDLD-FSTS 180
>ZFIN|ZDB-GENE-050417-278 [details] [associations]
symbol:mrps18b "mitochondrial ribosomal protein
S18B" species:7955 "Danio rerio" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR001648 Pfam:PF01084
ProDom:PD002239 ZFIN:ZDB-GENE-050417-278 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:4.10.640.10 SUPFAM:SSF46911
CTD:28973 HOVERGEN:HBG054347 KO:K16174 GeneTree:ENSGT00390000010554
EMBL:BX510301 EMBL:BC093356 IPI:IPI00513480 RefSeq:NP_001017759.1
UniGene:Dr.32961 Ensembl:ENSDART00000023074 GeneID:550455
KEGG:dre:550455 OMA:WDYLESE NextBio:20879700 Uniprot:Q566S7
Length = 242
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 61/124 (49%), Positives = 73/124 (58%)
Query: 65 YLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIH 124
YL SE Y + YG +PVW YRRNHKG P+KTRKTCIR G NPCPICRD +IIH
Sbjct: 72 YLKSEEYIERYGTKPVWTNYRRNHKGGIPPQKTRKTCIR-GDKKCANPCPICRDPNIIIH 130
Query: 125 PYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREYNYKD 184
N+ LL+QF P G + TGVC KQ L AI AK+ GL+ ++ +D
Sbjct: 131 YKNVNLLQQFFCPETGVVHDPTVTGVCMKQQKLLSKAIETAKDFGLLRAQFAHVDFTKED 190
Query: 185 YFPT 188
Y T
Sbjct: 191 YSNT 194
>WB|WBGene00011759 [details] [associations]
symbol:mrps-18B species:6239 "Caenorhabditis elegans"
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] InterPro:IPR001648 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0006412
GO:GO:0005840 GO:GO:0040035 GO:GO:0003735 EMBL:Z66524
Gene3D:4.10.640.10 SUPFAM:SSF46911 eggNOG:NOG288650 KO:K16174
GeneTree:ENSGT00390000010554 PIR:T24899 RefSeq:NP_495800.1
ProteinModelPortal:Q22470 SMR:Q22470 STRING:Q22470 PaxDb:Q22470
EnsemblMetazoa:T13H5.5 GeneID:188488 KEGG:cel:CELE_T13H5.5
UCSC:T13H5.5 CTD:188488 WormBase:T13H5.5 HOGENOM:HOG000017583
InParanoid:Q22470 OMA:LPIYRWY NextBio:938992 Uniprot:Q22470
Length = 238
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 42/126 (33%), Positives = 72/126 (57%)
Query: 63 IRYLASEAYQKCYGDEPVWKYYRRNHKGMFAPKKT-RKTCI-RSGIIATGNPCPICRDEY 120
I Y+ S Y + Y P++++Y+RN KG + R CI + G + CP+CRDEY
Sbjct: 58 ISYMKSRGYAEAYKGLPIYRWYKRNIKGQSKLQPPPRLFCIDKHGRFNLNHACPVCRDEY 117
Query: 121 LIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITFDLPFREY 180
L N L+EQF++ + + +K+G+C++Q+ L + +AK G ITF + FR +
Sbjct: 118 LYFDYRNPGLIEQFLADGTDQPIDILKSGLCREQYTLLRAQLLKAKEHGTITFGVEFRNF 177
Query: 181 NYKDYF 186
+Y+ ++
Sbjct: 178 DYRQWY 183
>UNIPROTKB|B4DFG6 [details] [associations]
symbol:MRPS18B "28S ribosomal protein S18b, mitochondrial"
species:9606 "Homo sapiens" [GO:0005840 "ribosome" evidence=IEA]
EMBL:AL662800 EMBL:AL662825 EMBL:BX119957 EMBL:CR753328
EMBL:CR759778 GO:GO:0005840 EMBL:AL845353 EMBL:AL732442
EMBL:BX908728 EMBL:BX248507 eggNOG:NOG288650 UniGene:Hs.655329
HGNC:HGNC:14516 ChiTaRS:MRPS18B EMBL:AK294086 IPI:IPI01013185
Ensembl:ENST00000506373 Ensembl:ENST00000547664
Ensembl:ENST00000549214 Ensembl:ENST00000550117
Ensembl:ENST00000550569 Ensembl:ENST00000551037
Ensembl:ENST00000553229 UCSC:uc011dml.1 Uniprot:B4DFG6
Length = 121
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 44/97 (45%), Positives = 51/97 (52%)
Query: 25 QFSLSRICCXXXXXXXXXXXKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYY 84
Q L +C P+ P KD P +YL SE YQ+ YG PVW Y
Sbjct: 26 QVPLQTLCTKAPSEEDSLSSVPISPYKDE--PW------KYLESEEYQERYGSRPVWADY 77
Query: 85 RRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYL 121
RRNHKG P++TRKTCIR + GNPCPICRD L
Sbjct: 78 RRNHKGGVPPQRTRKTCIRRNKVV-GNPCPICRDHKL 113
>UNIPROTKB|Q5STN0 [details] [associations]
symbol:MRPS18B "28S ribosomal protein S18b, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR001648
ProDom:PD002239 GO:GO:0006412 EMBL:AL662800 EMBL:AL662825
EMBL:BX119957 EMBL:CR753328 EMBL:CR759778 GO:GO:0005840
GO:GO:0003735 EMBL:AL845353 EMBL:AL732442 EMBL:BX908728
EMBL:BX248507 HOGENOM:HOG000039992 HOVERGEN:HBG054347
UniGene:Hs.655329 HGNC:HGNC:14516 ChiTaRS:MRPS18B IPI:IPI00445391
SMR:Q5STN0 IntAct:Q5STN0 Ensembl:ENST00000376508
Ensembl:ENST00000400594 Ensembl:ENST00000412843
Ensembl:ENST00000418070 Ensembl:ENST00000428224
Ensembl:ENST00000437247 Ensembl:ENST00000440992 Uniprot:Q5STN0
Length = 215
Score = 148 (57.2 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 33/78 (42%), Positives = 39/78 (50%)
Query: 25 QFSLSRICCXXXXXXXXXXXKPVDPAKDRRNPVPVEISIRYLASEAYQKCYGDEPVWKYY 84
Q L +C P+ P KD P +YL SE YQ+ YG PVW Y
Sbjct: 26 QVPLQTLCTKAPSEEDSLSSVPISPYKDE--PW------KYLESEEYQERYGSRPVWADY 77
Query: 85 RRNHKGMFAPKKTRKTCI 102
RRNHKG P++TRKTCI
Sbjct: 78 RRNHKGGVPPQRTRKTCI 95
Score = 47 (21.6 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 127 NIKLLEQFISPVNGEILSYMKTGV 150
N+KLLEQF+ G I TG+
Sbjct: 96 NVKLLEQFVCAHTGIIFYAPYTGL 119
>UNIPROTKB|F1RRH6 [details] [associations]
symbol:F1RRH6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR001648 Pfam:PF01084
ProDom:PD002239 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:4.10.640.10 SUPFAM:SSF46911 OMA:HRPRLPE
GeneTree:ENSGT00390000006493 EMBL:CR974460 EMBL:CT009664
EMBL:CU633430 Ensembl:ENSSSCT00000001889 Uniprot:F1RRH6
Length = 196
Score = 113 (44.8 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 109 TGNPCPICRDEYLIIHPYN---IKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQA 165
TG CPICR + + H YN + LL QFI P +G +L TG+CQ++HLK+ + A
Sbjct: 67 TGQ-CPICR--WNLKHKYNYEDVLLLSQFIRP-HGGMLPRRITGLCQEEHLKIEECVKMA 122
Query: 166 KNKGLI 171
GL+
Sbjct: 123 HRAGLL 128
>UNIPROTKB|F1SIU4 [details] [associations]
symbol:MRPS18A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR001648 Pfam:PF01084
ProDom:PD002239 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:4.10.640.10 SUPFAM:SSF46911 CTD:55168
GeneTree:ENSGT00390000006493 EMBL:CU928880 RefSeq:XP_003483836.1
UniGene:Ssc.5035 Ensembl:ENSSSCT00000017799 GeneID:100154748
KEGG:ssc:100154748 OMA:LTRWSID Uniprot:F1SIU4
Length = 196
Score = 113 (44.8 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 109 TGNPCPICRDEYLIIHPYN---IKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQA 165
TG CPICR + + H YN + LL QFI P +G +L TG+CQ++HLK+ + A
Sbjct: 67 TGQ-CPICR--WNLKHKYNYEDVLLLSQFIRP-HGGMLPRRITGLCQEEHLKIEECVKMA 122
Query: 166 KNKGLI 171
GL+
Sbjct: 123 HRAGLL 128
>UNIPROTKB|Q9NVS2 [details] [associations]
symbol:MRPS18A "28S ribosomal protein S18a, mitochondrial"
species:9606 "Homo sapiens" [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IDA] [GO:0006412 "translation"
evidence=NAS] [GO:0003735 "structural constituent of ribosome"
evidence=NAS] InterPro:IPR001648 Pfam:PF01084 ProDom:PD002239
PROSITE:PS00057 EMBL:CH471081 GO:GO:0006412 GO:GO:0003735
GO:GO:0005763 EMBL:AL136131 Gene3D:4.10.640.10 SUPFAM:SSF46911
CTD:55168 eggNOG:NOG249629 HOGENOM:HOG000139370 HOVERGEN:HBG058800
OrthoDB:EOG4CNQS4 EMBL:AB049952 EMBL:DQ884400 EMBL:AK001410
EMBL:AK300757 EMBL:BC010364 IPI:IPI00018691 IPI:IPI00513805
IPI:IPI00642295 RefSeq:NP_001180272.1 RefSeq:NP_060605.1
UniGene:Hs.520149 ProteinModelPortal:Q9NVS2 SMR:Q9NVS2
STRING:Q9NVS2 PhosphoSite:Q9NVS2 DMDM:24212201 PaxDb:Q9NVS2
PRIDE:Q9NVS2 DNASU:55168 Ensembl:ENST00000372116
Ensembl:ENST00000372133 GeneID:55168 KEGG:hsa:55168 UCSC:uc003ovy.2
UCSC:uc003owa.2 GeneCards:GC06M043639 HGNC:HGNC:14515 HPA:HPA035450
HPA:HPA035451 MIM:611981 neXtProt:NX_Q9NVS2 PharmGKB:PA31003
OMA:HRPRLPE PhylomeDB:Q9NVS2 GenomeRNAi:55168 NextBio:58945
ArrayExpress:Q9NVS2 Bgee:Q9NVS2 CleanEx:HS_MRPS18A
Genevestigator:Q9NVS2 GermOnline:ENSG00000096080 Uniprot:Q9NVS2
Length = 196
Score = 105 (42.0 bits), Expect = 0.00032, P = 0.00032
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 113 CPICRDEYLIIHPYN---IKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKG 169
CPICR + + H YN + LL QFI P +G +L TG+CQ++H K+ + A G
Sbjct: 70 CPICR--WNLKHKYNYDDVLLLSQFIRP-HGGMLPRKITGLCQEEHRKIEECVKMAHRAG 126
Query: 170 LI 171
L+
Sbjct: 127 LL 128
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.139 0.446 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 190 179 0.00089 109 3 11 22 0.40 32
31 0.39 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 15
No. of states in DFA: 598 (64 KB)
Total size of DFA: 183 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:07
No. of threads or processors used: 24
Search cpu time: 15.95u 0.09s 16.04t Elapsed: 00:00:08
Total cpu time: 15.95u 0.09s 16.04t Elapsed: 00:00:15
Start: Thu Aug 15 13:59:02 2013 End: Thu Aug 15 13:59:17 2013