RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1551
         (190 letters)



>d2uubr1 a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus
           thermophilus [TaxId: 274]}
          Length = 70

 Score = 55.0 bits (133), Expect = 2e-11
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 113 CPICRDEYLIIHPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLIT 172
                 E+ +    N+++L++F+S   G+IL   +TG+  K+   L   I +A+  GL+ 
Sbjct: 4   VKATLGEFDLRDYRNVEVLKRFLSE-TGKILPRRRTGLSAKEQRILAKTIKRARILGLLP 62

Query: 173 F 173
           F
Sbjct: 63  F 63


>d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli
           [TaxId: 562]}
          Length = 55

 Score = 53.0 bits (128), Expect = 8e-11
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 127 NIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAITQAKNKGLITF 173
           +I  L+ +I+  +G+I+    TG   K   +L  AI +A+   L+ +
Sbjct: 6   DIATLKNYITE-SGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPY 51


>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId:
           3663]}
          Length = 104

 Score = 26.1 bits (57), Expect = 1.2
 Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 7/72 (9%)

Query: 76  GDEPVWKYYRRNHKGMFAPKKTRKTCIRSGIIATGNPCPICRDEYLIIHPYNIKLLEQFI 135
           GD  ++ Y  + H  +   ++  K+C  S   A+        D   +  P        F+
Sbjct: 33  GDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGA---DSIPLKRPGTF----YFL 85

Query: 136 SPVNGEILSYMK 147
             + G      K
Sbjct: 86  CGIPGHCQLGQK 97


>d1kyfa1 b.1.10.1 (A:692-824) Alpha-adaptin AP2 ear domain,
           N-terminal subdomain {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 133

 Score = 26.4 bits (58), Expect = 1.6
 Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%)

Query: 124 HPYNIKLLEQFISPVNGEILSYMKTGVCQKQHLKLLVAIT 163
              NI+ +  F       I  +   G  Q   +KL + + 
Sbjct: 94  QVVNIECISDFTEAPVLNI-QFRYGGTFQNVSVKLPITLN 132


>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 79

 Score = 25.3 bits (55), Expect = 2.0
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 5/33 (15%)

Query: 99  KTCIRSGIIATGNPCPICR-----DEYLIIHPY 126
            +C+ S   + G  CP CR      E +++ P+
Sbjct: 47  TSCLTSWQESEGQGCPFCRCEIKGTEPIVVDPF 79


>d1ryqa_ g.41.9.3 (A:) putative DNA-directed RNA polymerase subunit
           E'' (RpoE2) {Pyrococcus furiosus [TaxId: 2261]}
          Length = 67

 Score = 24.3 bits (53), Expect = 3.3
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 96  KTRKTCIRSGIIATGNPCPICRDE 119
            + K C     I + + CP+C   
Sbjct: 7   SSEKACRHCHYITSEDRCPVCGSR 30


>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus)
           [TaxId: 3659]}
          Length = 96

 Score = 24.0 bits (52), Expect = 5.7
 Identities = 6/36 (16%), Positives = 10/36 (27%)

Query: 76  GDEPVWKYYRRNHKGMFAPKKTRKTCIRSGIIATGN 111
           GD  ++ Y    H  +   +    TC          
Sbjct: 27  GDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYT 62


>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
           (RAG1), dimerization domain {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 86

 Score = 24.1 bits (52), Expect = 5.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 99  KTCIRSGIIATGNPCPICR 117
           + CI   +   G+ CP CR
Sbjct: 47  RICILRCLKVMGSYCPSCR 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0717    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 768,907
Number of extensions: 35784
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 13
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)