Query psy15512
Match_columns 786
No_of_seqs 256 out of 662
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 23:13:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15512.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15512hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_I Photosystem II reaction 72.2 5.7 0.0002 28.4 4.4 27 529-555 2-28 (38)
2 2bai_A Genome polyprotein; zin 17.1 22 0.00074 24.2 -0.6 19 321-339 5-23 (32)
3 4fqn_A Malcavernin; helical do 10.8 49 0.0017 28.8 -0.3 59 684-752 35-93 (98)
4 3j1r_A Archaeal adhesion filam 9.9 3.3E+02 0.011 17.9 3.4 12 454-465 11-22 (26)
5 1pi7_A VPU protein, U ORF prot 9.0 2.6E+02 0.0088 19.9 2.9 22 368-389 13-34 (36)
6 3guv_A Site-specific recombina 7.8 3E+02 0.01 25.4 4.0 41 42-99 70-110 (167)
7 3s3x_D Psalmotoxin-1; acid-sen 7.3 36 0.0012 23.4 -2.0 9 382-390 20-28 (37)
8 1mjh_A Protein (ATP-binding do 6.9 9.5E+02 0.032 21.0 7.0 40 82-133 84-123 (162)
9 3ixz_A Potassium-transporting 5.7 1.3E+03 0.045 27.9 9.2 56 684-740 792-854 (1034)
10 3dlo_A Universal stress protei 5.3 7.3E+02 0.025 22.0 5.1 47 78-134 75-121 (155)
No 1
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=72.23 E-value=5.7 Score=28.41 Aligned_cols=27 Identities=22% Similarity=0.556 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhcCcc
Q psy15512 529 LTFKVFIFQFVNYYSSIFYIAFFKGRF 555 (786)
Q Consensus 529 li~K~FlF~FvN~y~slfYiAF~~~~f 555 (786)
+++|+|+...|-.|.|||.-+|.-.+=
T Consensus 2 ltLKi~Vy~vV~ffvsLFiFGfLsnDP 28 (38)
T 3arc_I 2 ETLKITVYIVVTFFVLLFVFGFLSGDP 28 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred eeEEeeehhHHHHHHHHHHccccCCCC
Confidence 689999999999999999999987764
No 2
>2bai_A Genome polyprotein; zinc finger domain, viruses, cardiovirus, structural genomics, PSI, protein structure initiative; NMR {Mengo virus} SCOP: g.87.1.1
Probab=17.07 E-value=22 Score=24.24 Aligned_cols=19 Identities=32% Similarity=0.833 Sum_probs=16.0
Q ss_pred chhcccCCCCcccccCCCc
Q psy15512 321 VAHEICTTGDDITMCPLCD 339 (786)
Q Consensus 321 ~~~eic~~~~~~~mcp~c~ 339 (786)
..+|+|.-+..+-.||+|.
T Consensus 5 ~~~~aCkHgyp~~~CP~Ct 23 (32)
T 2bai_A 5 MEQEICAHSMTFEECPKCS 23 (32)
T ss_dssp CCSCCCSSSSCGGGHHHHH
T ss_pred HHHHHHhcCCCcccccccc
Confidence 3579999888888999987
No 3
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=10.81 E-value=49 Score=28.79 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcchHHHHHHHhhHHHHhhhHHHHHhhccCCCcccccccchHHHHHHHHHH
Q psy15512 684 EEYLEMVLQFGFITIFVAAFPLAPLFALLNNWVEIRLDAQKFLCQTRRVVPERAENIGIWFKILDMLAH 752 (786)
Q Consensus 684 ~dYlEmviQFGyvtlF~~afPLApl~AllnNiiEiR~Da~Kl~~~~rRP~p~ra~~IG~W~~iL~~i~~ 752 (786)
.+|..++-+|=- .-| +--+.++++|+-.|-.|++-..-||+ .+.+|||.....||.+++
T Consensus 35 qqFA~Llr~YR~------G~~---I~~Fc~kLl~LyG~~Rk~LL~gmRpF-Ip~~Di~~FesFle~igi 93 (98)
T 4fqn_A 35 QQFAALLHEYRN------GAS---IHEFCINLRQLYGDSRKFLLLGLRPF-IPEKDSQHFENFLETIGV 93 (98)
T ss_dssp HHHHHHHHHHHT------TCC---HHHHHHHHHHHHCGGGGGGGGGGGGG-SCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHc------CCC---HHHHHHHHHHHhchHHHHHHhhccCC-CChhhHHHHHHHHHHcCc
Confidence 455555555532 224 44456788999999999999888998 666799999999998763
No 4
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=9.95 E-value=3.3e+02 Score=17.86 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q psy15512 454 LVFIFILAVIIY 465 (786)
Q Consensus 454 lv~~~v~~vi~y 465 (786)
++++...++.+|
T Consensus 11 Iviav~aaVlly 22 (26)
T 3j1r_A 11 ILIAVAAAVLLY 22 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333444444
No 5
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=9.00 E-value=2.6e+02 Score=19.91 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhh
Q psy15512 368 VFYSVFVSFWAVTFLEYWKRKS 389 (786)
Q Consensus 368 v~faif~~lWat~Fle~WKR~~ 389 (786)
+.+-+-+++|..+|.|+.|-+.
T Consensus 13 valIiaIVVWtiv~ieYrk~~k 34 (36)
T 1pi7_A 13 VAIIIAIVVWSIVIIEGRGGKK 34 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5566778899999999998653
No 6
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=7.82 E-value=3e+02 Score=25.41 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=27.9
Q ss_pred cCCCcceeEEEEeeecCCCCCCCCCCCCCcchHhhHHHHHHHHHHHHHHHHcCceEEE
Q psy15512 42 RDGRRKIDYVLVYEYVPSGRCSSSSSHGSSSEKKLAKYENWRTTFMANLERAGLQMEK 99 (786)
Q Consensus 42 ~Dg~r~iDfVLvy~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~Fe~nL~~~GLelE~ 99 (786)
+.|++.||.|+|++-+.-++ . ...-..+.+.|.+.|..+..
T Consensus 70 ~~g~~~~d~lvv~~ldRl~R--------~---------~~~~~~~~~~l~~~gv~l~~ 110 (167)
T 3guv_A 70 KSGKDGVSFVLVFKLSRFAR--------N---------AADVLSTLQIMQDYGVNLIC 110 (167)
T ss_dssp HTCTTCCSEEEESCGGGTCS--------S---------HHHHHHHHHHHHHTTCEEEE
T ss_pred HcCCCCccEEEEEeCchhcC--------C---------HHHHHHHHHHHHHCCCEEEE
Confidence 45666699999998776533 1 12223466779999999864
No 7
>3s3x_D Psalmotoxin-1; acid-sensing, ION channel, membrane protein, sodium channel, membrane, glycoprotein, ION transport, membrane; HET: NAG; 2.99A {Psalmopoeus cambridgei} PDB: 2kni_A 1lmm_A 4fz0_M* 4fz1_D*
Probab=7.32 E-value=36 Score=23.39 Aligned_cols=9 Identities=56% Similarity=1.213 Sum_probs=6.4
Q ss_pred HHHHhhhhh
Q psy15512 382 LEYWKRKSA 390 (786)
Q Consensus 382 le~WKR~~~ 390 (786)
||.||||.+
T Consensus 20 lecwkrrrs 28 (37)
T 3s3x_D 20 LECWKRRRS 28 (37)
T ss_dssp EEEECCSSS
T ss_pred HHHHHhccc
Confidence 578888743
No 8
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=6.90 E-value=9.5e+02 Score=20.99 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCceEEEEEEeeeccceEEEEEEecChHHHHHHHHHccccc
Q psy15512 82 WRTTFMANLERAGLQMEKEVIQTVNKKCVHFTKIHAPWSVLCQYAEELNMRA 133 (786)
Q Consensus 82 ~R~~Fe~nL~~~GLelE~e~~~~~~~~~~~FvKIhAP~~vL~ryAE~L~lk~ 133 (786)
.-+++.+.+...|++++.. +...-|.+.++++|++.+.-+
T Consensus 84 ~l~~~~~~~~~~g~~~~~~------------v~~G~~~~~I~~~a~~~~~dl 123 (162)
T 1mjh_A 84 KMENIKKELEDVGFKVKDI------------IVVGIPHEEIVKIAEDEGVDI 123 (162)
T ss_dssp HHHHHHHHHHHTTCEEEEE------------EEEECHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHcCCceEEE------------EcCCCHHHHHHHHHHHcCCCE
Confidence 3445666677789876532 334679999999999877543
No 9
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=5.72 E-value=1.3e+03 Score=27.92 Aligned_cols=56 Identities=11% Similarity=0.136 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcchHHHHHHHhhHHHHhhhHHHHHhh------c-cCCCccccccc
Q psy15512 684 EEYLEMVLQFGFITIFVAAFPLAPLFALLNNWVEIRLDAQKFLCQ------T-RRVVPERAENI 740 (786)
Q Consensus 684 ~dYlEmviQFGyvtlF~~afPLApl~AllnNiiEiR~Da~Kl~~~------~-rRP~p~ra~~I 740 (786)
-...|++.+|.++ +|+...||.|+--|..|++--=+=+.-|... . |+|.+.+.+.|
T Consensus 792 ~ni~~~~~~~~~~-~~~~~~pl~~~qiL~inl~~d~~palal~~e~~~~~~m~~~Pr~~~~~~l 854 (1034)
T 3ixz_A 792 KNIPELTPYLIYI-TVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRL 854 (1034)
T ss_pred HHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhCCCCCCccccc
Confidence 3455666666554 3455678999888888877655555555533 2 55555434444
No 10
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=5.29 E-value=7.3e+02 Score=22.03 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHcCceEEEEEEeeeccceEEEEEEecChHHHHHHHHHcccccc
Q psy15512 78 KYENWRTTFMANLERAGLQMEKEVIQTVNKKCVHFTKIHAPWSVLCQYAEELNMRAP 134 (786)
Q Consensus 78 ~~~~~R~~Fe~nL~~~GLelE~e~~~~~~~~~~~FvKIhAP~~vL~ryAE~L~lk~P 134 (786)
+.++.-+.+.+.+++.|..++.+. .+.-.-|.+.+.++|++.+.-+=
T Consensus 75 ~~~~~l~~~~~~~~~~g~~~~~~~----------~v~~G~~~~~I~~~a~~~~~DLI 121 (155)
T 3dlo_A 75 EAKETLSWAVSIIRKEGAEGEEHL----------LVRGKEPPDDIVDFADEVDAIAI 121 (155)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEE----------EESSSCHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHHHhcCCCceEEE----------EecCCCHHHHHHHHHHHcCCCEE
Confidence 344556667888888999876431 12224689999999998775433
Done!