Query psy15512
Match_columns 786
No_of_seqs 256 out of 662
Neff 6.7
Searched_HMMs 13730
Date Fri Aug 16 23:13:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15512.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15512hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axti1 f.23.37.1 (I:1-35) Pho 79.2 1.4 0.0001 29.0 4.4 27 529-555 2-28 (35)
2 d2baia1 g.87.1.1 (A:1-32) Poly 7.3 29 0.0021 21.6 -0.8 19 321-339 5-23 (32)
3 d2e74e1 f.23.24.1 (E:1-32) Pet 7.0 2.4E+02 0.017 17.2 3.4 13 450-462 10-22 (32)
4 d1kvka2 d.58.26.3 (A:226-394) 6.8 2.9E+02 0.021 23.6 5.6 34 80-119 125-158 (169)
5 d1hara_ e.8.1.2 (A:) HIV-1 rev 6.8 1.5E+02 0.011 27.1 3.6 19 78-96 197-215 (216)
6 d2dlqa4 g.37.1.1 (A:8-34) GLI- 6.7 67 0.0049 19.3 0.6 7 334-340 2-8 (27)
7 d1jb0i_ f.23.17.1 (I:) Subunit 6.5 1.3E+02 0.0096 19.6 2.1 15 294-308 17-31 (38)
8 d1lmma_ g.3.6.2 (A:) Psalmotox 6.4 20 0.0015 23.3 -2.0 8 382-389 21-28 (40)
9 d2cu8a1 g.39.1.3 (A:8-37) Cyst 5.0 82 0.006 20.0 0.3 7 334-340 4-10 (30)
10 d2ivya1 d.58.58.1 (A:2-89) Hyp 5.0 2.7E+02 0.02 21.5 3.7 16 81-96 14-29 (88)
No 1
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=79.21 E-value=1.4 Score=29.03 Aligned_cols=27 Identities=22% Similarity=0.556 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhcCcc
Q psy15512 529 LTFKVFIFQFVNYYSSIFYIAFFKGRF 555 (786)
Q Consensus 529 li~K~FlF~FvN~y~slfYiAF~~~~f 555 (786)
+++|+++..-|..|.+||.-+|...+=
T Consensus 2 ltLKi~Vy~vV~fFv~lFiFGFLSnDP 28 (35)
T d2axti1 2 ETLKITVYIVVTFFVLLFVFGFLSGDP 28 (35)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ceEEEehhhHHHHHHHHHHHhhccCCC
Confidence 689999999999999999999987763
No 2
>d2baia1 g.87.1.1 (A:1-32) Polyprotein leader polypeptide {Mengo encephalomyocarditis virus [TaxId: 12107]}
Probab=7.28 E-value=29 Score=21.56 Aligned_cols=19 Identities=32% Similarity=0.833 Sum_probs=15.2
Q ss_pred chhcccCCCCcccccCCCc
Q psy15512 321 VAHEICTTGDDITMCPLCD 339 (786)
Q Consensus 321 ~~~eic~~~~~~~mcp~c~ 339 (786)
..+|||...-++--||.|.
T Consensus 5 meqeicahsmtfeecpkcs 23 (32)
T d2baia1 5 MEQEICAHSMTFEECPKCS 23 (32)
T ss_dssp CCSCCCSSSSCGGGHHHHH
T ss_pred HHHHHHHhhccHhhCcchh
Confidence 3579998877888899886
No 3
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.95 E-value=2.4e+02 Score=17.24 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q psy15512 450 LMISLVFIFILAV 462 (786)
Q Consensus 450 ~~i~lv~~~v~~v 462 (786)
+++++.+++.+|+
T Consensus 10 vfialffgiavgi 22 (32)
T d2e74e1 10 VFIALFFGIAVGI 22 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 3444444444454
No 4
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.81 E-value=2.9e+02 Score=23.61 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHcCceEEEEEEeeeccceEEEEEEecCh
Q psy15512 80 ENWRTTFMANLERAGLQMEKEVIQTVNKKCVHFTKIHAPW 119 (786)
Q Consensus 80 ~~~R~~Fe~nL~~~GLelE~e~~~~~~~~~~~FvKIhAP~ 119 (786)
.+..+...+.|+++|+++-...... .+ |+||+|-
T Consensus 125 ~~~~~~i~~~l~~~Gf~~~~~~i~~---~G---v~i~~~~ 158 (169)
T d1kvka2 125 RAKVEAAKQALTGCGFDCWETSIGA---PG---VSMHSAT 158 (169)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESC---CC---SEEECTT
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCC---Cc---EEEeccc
Confidence 4566788889999999874432222 22 6788764
No 5
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=6.77 E-value=1.5e+02 Score=27.10 Aligned_cols=19 Identities=21% Similarity=0.115 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHcCce
Q psy15512 78 KYENWRTTFMANLERAGLQ 96 (786)
Q Consensus 78 ~~~~~R~~Fe~nL~~~GLe 96 (786)
+|.+.=++..+.|+++||.
T Consensus 197 eH~~~l~~vl~~L~~~Glt 215 (216)
T d1hara_ 197 AHRTKIEELRQHLLRWGLT 215 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 4566666789999999985
No 6
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.69 E-value=67 Score=19.30 Aligned_cols=7 Identities=57% Similarity=1.469 Sum_probs=5.7
Q ss_pred ccCCCcC
Q psy15512 334 MCPLCDK 340 (786)
Q Consensus 334 mcp~c~~ 340 (786)
-||.|+|
T Consensus 2 qcp~c~k 8 (27)
T d2dlqa4 2 ECPTCHK 8 (27)
T ss_dssp CCTTTCC
T ss_pred cCcchHH
Confidence 3899987
No 7
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=6.50 E-value=1.3e+02 Score=19.64 Aligned_cols=15 Identities=40% Similarity=1.012 Sum_probs=12.4
Q ss_pred HHHhhhHHHHHHHHH
Q psy15512 294 YTGWLLPAAIVGLLV 308 (786)
Q Consensus 294 YT~~L~~~ai~Gl~~ 308 (786)
-..||+|+.+.|+++
T Consensus 17 vv~wl~p~vvMglLF 31 (38)
T d1jb0i_ 17 VVCWLMPTVVMGLLF 31 (38)
T ss_dssp HHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 467999999999875
No 8
>d1lmma_ g.3.6.2 (A:) Psalmotoxin 1 {Spider (Psalmopoeus cambridgei) [TaxId: 179874]}
Probab=6.35 E-value=20 Score=23.34 Aligned_cols=8 Identities=63% Similarity=1.319 Sum_probs=6.0
Q ss_pred HHHHhhhh
Q psy15512 382 LEYWKRKS 389 (786)
Q Consensus 382 le~WKR~~ 389 (786)
||.||||.
T Consensus 21 lecwkrrr 28 (40)
T d1lmma_ 21 LECWKRRR 28 (40)
T ss_dssp CEEEECSS
T ss_pred HHHHHhcc
Confidence 57888874
No 9
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.97 E-value=82 Score=19.95 Aligned_cols=7 Identities=71% Similarity=1.663 Sum_probs=5.6
Q ss_pred ccCCCcC
Q psy15512 334 MCPLCDK 340 (786)
Q Consensus 334 mcp~c~~ 340 (786)
.||.|+|
T Consensus 4 ~CprC~K 10 (30)
T d2cu8a1 4 KCPKCDK 10 (30)
T ss_dssp BCTTTCC
T ss_pred cCCCCCC
Confidence 5888887
No 10
>d2ivya1 d.58.58.1 (A:2-89) Hypothetical protein SSO1404 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=4.97 E-value=2.7e+02 Score=21.52 Aligned_cols=16 Identities=31% Similarity=0.489 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHcCce
Q psy15512 81 NWRTTFMANLERAGLQ 96 (786)
Q Consensus 81 ~~R~~Fe~nL~~~GLe 96 (786)
++|.+.-+-|++-||+
T Consensus 14 krr~kv~k~l~~yGl~ 29 (88)
T d2ivya1 14 NLRNRVAEFLKKKGLD 29 (88)
T ss_dssp HHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHhCCc
Confidence 5778899999999994
Done!