RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15512
(786 letters)
>gnl|CDD|218140 pfam04547, Anoctamin, Calcium-activated chloride channel. The
family carries eight putative transmembrane domains,
and, although it has no similarity to other known
channel proteins, it is clearly a calcium-activated
ionic channel. It is expressed in various secretory
epithelia, the retina and sensory neurons, and mediates
receptor-activated chloride currents in diverse
physiological processes.
Length = 449
Score = 442 bits (1138), Expect = e-148
Identities = 196/503 (38%), Positives = 275/503 (54%), Gaps = 100/503 (19%)
Query: 276 IREYFGEKIAIYFAWLGFYTGWLLPAAIVGLLVFLYGVVTMNTNRVAHEICTTGDDITMC 335
IR YFGEKIA+YFA+LGFYT LLP A++GL+ FLYG ++
Sbjct: 1 IRSYFGEKIALYFAFLGFYTKMLLPPAVLGLICFLYGGLS-------------------- 40
Query: 336 PLCDKELGCGYWQLSDICGYAKISYLFDHPGTVFYSVFVSFWAVTFLEYWKRKSASLAHY 395
++LFD+P TV +++F+ W+ FLE+WKRK + LA+
Sbjct: 41 -----------------------THLFDNPFTVIFAIFMILWSTLFLEFWKRKQSELAYR 77
Query: 396 WDVMGFTDEIERPRPEFAARAPFQKINPVTGVKEPSFPKSLRNTRIIAGMGLVFLMISLV 455
W V+GF +E E PRPEF +I+P+TG EP +P R R + + +V L I LV
Sbjct: 78 WGVLGFEEEQEEPRPEFKGD--EIEIDPITGELEPYYPPWKRLLRQLLSIPVVLLFIGLV 135
Query: 456 FIFILAVIIYRVLISIPLFQNSALRSFAQTVASVSGAVVNLFLIMAMSNLYEKLALRLTS 515
I+ + I R+ +S S F Q++ S A++N +I+ ++ +YEK+A +LT
Sbjct: 136 IGIIIGIFILRIFLSEVYSGPS----FKQSLESFLPAILNSVIILILNFIYEKVATKLTD 191
Query: 516 WEMHRTQTEFDDSLTFKVFIFQFVNYYSSIFYIAFFKGRFVGCPGNYSKIWSLRNEDCRT 575
WE HRTQ+E+++SL KVF+FQFVN YS +FYIAFFKG F G C
Sbjct: 192 WENHRTQSEYENSLILKVFLFQFVNSYSPLFYIAFFKGPFGGY--------------CDF 237
Query: 576 GGCLIELAQQLAVIMIGKQFFNNVKEVGVPKVKAWFQRKKCRTGGCLIELAQQLAVIMIG 635
GGCL EL QL IMI KQ NN+ EV +P +K ++KK +
Sbjct: 238 GGCLEELKYQLITIMITKQIINNITEVVLPYLKKKIRKKKIKKK---------------- 281
Query: 636 KQFFNNVKEVGVPKVKAWFQRKKVQLSKSHLKTRWEKDNHLP--INKGLFEEYLEMVLQF 693
+ K+ + ++ + R E ++ LP GLF++YLEMV+QF
Sbjct: 282 -------------------KEKEKKPEENEILERIENESELPPYDVFGLFDDYLEMVIQF 322
Query: 694 GFITIFVAAFPLAPLFALLNNWVEIRLDAQKFLCQTRRVVPERAENIGIWFKILDMLAHL 753
G++T+F AAFPLAPL AL+NN +EIR DA K + RR VP+RA++IG W IL++L+ L
Sbjct: 323 GYLTLFSAAFPLAPLLALINNIIEIRSDAFKLCYEFRRPVPQRADSIGPWLDILELLSWL 382
Query: 754 AVISNGFLIAFTSDFLPKLLYQY 776
+VI+N LIAFTS K
Sbjct: 383 SVITNAGLIAFTSTGTLKGYLND 405
>gnl|CDD|237199 PRK12772, PRK12772, bifunctional flagellar biosynthesis protein
FliR/FlhB; Provisional.
Length = 609
Score = 33.5 bits (77), Expect = 0.55
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 18/89 (20%)
Query: 418 FQKINPVTGVKEPSFPKSLRNTRIIAGMGLVFLMISLVFIFILAVIIYRVL----ISIPL 473
+K+NP+ G K R+ + ++ L+ L I I+ ++ Y+ L + I
Sbjct: 381 LKKLNPINGFK-----------RMFSMRSVMELLKDLTIITIVGIVGYKFLQDNYLDILN 429
Query: 474 FQNSALRSFAQTVASVSGAVVNLFLIMAM 502
N L + S+ V+++F + +
Sbjct: 430 LGNLYLPYIITELKSL---VISIFFRITL 455
>gnl|CDD|190398 pfam02714, DUF221, Domain of unknown function DUF221. This family
consists of hypothetical transmembrane proteins none of
which have any function, the aligned region is at 538
residues at maximum length.
Length = 325
Score = 32.9 bits (76), Expect = 0.55
Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 8/113 (7%)
Query: 433 PKSLRNTRIIAGMGLVFLMISLVFIFILAVIIYRVLISIPLFQN--SALRSFAQTVASVS 490
+ R R + L+FL+I + + V +L ++ L+ +
Sbjct: 45 SRWERWLRRLIVNLLLFLLI---IFWAIPVAFVGLLSNLETLTKVWPFLKWILDLPPVLL 101
Query: 491 GAVVNLFLIMAMSNLYEKLAL---RLTSWEMHRTQTEFDDSLTFKVFIFQFVN 540
G V L + +S L L + L+ + H ++++ + S+ K F F VN
Sbjct: 102 GLVTGLLPTLLLSLLMALLPIILRFLSKLQGHPSRSDVELSVQSKYFAFLVVN 154
>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 363
Score = 33.0 bits (76), Expect = 0.68
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 418 FQKINPVTGVKEPSFPKSLRNTRIIAGMGLVFLMISLVFIFILAVIIYRVL-ISIPLFQN 476
F K+NP+ G+K RI + LV L+ SL+ I ++ ++ Y VL + +
Sbjct: 125 FSKLNPIKGLK-----------RIFSLQTLVELLKSLLKIVLVGLVAYFVLKNHLSELLS 173
Query: 477 SALRSFAQTVASVSGAVVNLFLIMAMS 503
A +S ++ + L L + +
Sbjct: 174 LAGQSPVAALSIFMELLGKLLLAVLLL 200
>gnl|CDD|235569 PRK05702, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 359
Score = 32.8 bits (76), Expect = 0.74
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 14/85 (16%)
Query: 418 FQKINPVTGVKEPSFPKSLRNTRIIAGMGLVFLMISLVFIFILAVIIYRVLISIPLFQNS 477
F K+NP+ G+K R+ + GLV L+ SL+ + ++ + Y VL S +
Sbjct: 125 FSKLNPLKGLK-----------RMFSAQGLVELLKSLLKVLLVGGVAYFVLWS---NLDE 170
Query: 478 ALRSFAQTVASVSGAVVNLFLIMAM 502
L A+ + + G ++L L + +
Sbjct: 171 LLSLAAEPLEAALGHALDLVLKLLL 195
>gnl|CDD|227303 COG4968, PilE, Tfp pilus assembly protein PilE [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 139
Score = 30.5 bits (69), Expect = 1.4
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 443 AGMGLVFLMISLVFIFILAVIIYRVLISIPLFQNSALRS 481
G L+ LMI + + ILA+I Y P +QN LRS
Sbjct: 6 RGFTLIELMIVVAIVGILALIAY------PSYQNYVLRS 38
>gnl|CDD|217407 pfam03176, MMPL, MMPL family. Members of this family are putative
integral membrane proteins from bacteria. Several of the
members are mycobacterial proteins. Many of the proteins
contain two copies of this aligned region. The function
of these proteins is not known, although it has been
suggested that they may be involved in lipid transport.
Length = 332
Score = 31.5 bits (72), Expect = 1.6
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 451 MISLVFIFILAVIIYRVLIS--IPLFQNSALRSFAQTVASVSGAVVNLFLIMAMSN 504
++LV IFI+ +I+YR +++ +PL + S V A++ L + +S
Sbjct: 149 AVTLVVIFIILLIVYRSVVAALLPLL--TVGLSLGAAQGLV--AILAHILGIGLST 200
>gnl|CDD|132270 TIGR03226, PhnU, 2-aminoethylphosphonate ABC transporter, permease
protein. This ABC transporter permease
(membrane-spanning) component is found in a region of
the salmonella typhimurium LT2 genome responsible for
the catabolism of 2-aminoethylphosphonate via the phnWX
pathway (GenProp0238).
Length = 312
Score = 30.4 bits (68), Expect = 3.4
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 422 NPVTGVKEPSFPKSLRNTRIIAGMGLVFLMISLVFIFILAVIIYRVLISIPLFQNSALRS 481
+ + + FP +L I AG L FL+ F IL I LI++P+ S
Sbjct: 220 HGLMLAGQVIFPAAL--PAIAAGGILCFLLTLNEF-GILLFIGAAGLITLPMAIYSKAIL 276
Query: 482 FAQTVASVSGAVVNLFLIMAMSNLYEKLALR 512
A+ +GA++ + L +A+ LY A R
Sbjct: 277 DIDLPAAAAGALIMIALSLALFALYRLAARR 307
>gnl|CDD|151805 pfam11364, DUF3165, Protein of unknown function (DUF3165). Some
members in this family of proteins are annotated as
membrane proteins however this cannot be confirmed.
Currently there is no known function.
Length = 82
Score = 28.1 bits (63), Expect = 3.7
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 433 PKSLRNTRIIAGMGLVFLMISLVFIFILAVIIYRVLISIP 472
PKS++ T M L+ ++ LV + ILAV+ + + +P
Sbjct: 19 PKSIKGT-----MNLIAVVGLLVALIILAVLSFIKIFQLP 53
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 30.5 bits (69), Expect = 3.8
Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 7/106 (6%)
Query: 434 KSLRNTRIIAGMG-LVFLMISLVFIFILAVIIYRVL---ISIPLFQ--NSALRSFAQTVA 487
+LR +R+ A + L+ L+ SL + +LA+ + VL +++ L +
Sbjct: 227 ANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPIL 286
Query: 488 SVSGAVVNLFLIMA-MSNLYEKLALRLTSWEMHRTQTEFDDSLTFK 532
+ V L A L+E L + + S+ F+
Sbjct: 287 QLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFE 332
>gnl|CDD|214428 MTH00137, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 611
Score = 30.6 bits (70), Expect = 3.8
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 22/104 (21%)
Query: 450 LMISLVFIFILAVIIYRVLISI---PLFQNSALRSFAQTVASVSGA----VVNLFLIMAM 502
L+++ I I A++IY +L ++ P N AL +V A ++ LFL
Sbjct: 5 LIMTSSLILIFALLIYPLLTTLSPNPQKPNWAL---THVKTAVKTAFFVSLLPLFLF--- 58
Query: 503 SNLYEKLALRLTSWEMHRTQTEFDDSLTFKVFIFQFVNYYSSIF 546
L + +T+W T T FD +++FK F ++YS IF
Sbjct: 59 --LNQGAETIITNWNWMNTLT-FDINISFK-F-----DHYSIIF 93
>gnl|CDD|224096 COG1175, UgpA, ABC-type sugar transport systems, permease
components [Carbohydrate transport and metabolism].
Length = 295
Score = 29.9 bits (68), Expect = 4.6
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 21/74 (28%)
Query: 430 PSFPKSLRNTRIIAGMGLVFLMISLVFIFILAVIIYRVLISIPLFQNSALRSFAQTVASV 489
P+F +L+NT LVF +IS+ +L ++ +++ L + R F +T+
Sbjct: 64 PTFWNALKNT-------LVFTVISVPLQLVLGLL-----LALLLNRKLRGRGFFRTL--- 108
Query: 490 SGAVVNLFLIMAMS 503
FL A+S
Sbjct: 109 ------FFLPWAIS 116
>gnl|CDD|129428 TIGR00328, flhB, flagellar biosynthetic protein FlhB. FlhB and its
functionally equivalent orthologs, from among a larger
superfamily of proteins involved in type III protein
export systems, are specifically involved in flagellar
protein export. The seed members are restricted and the
trusted cutoff is set high such that the proteins
gathered by this model play roles specifically related
to flagellar structures. Full-length homologs scoring
below the trusted cutoff are involved in peptide export
but not necessarily in the creation of flagella
[Cellular processes, Chemotaxis and motility].
Length = 347
Score = 29.9 bits (68), Expect = 4.7
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 418 FQKINPVTGVKEPSFPKSLRNTRIIAGMGLVFLMISLVFIFILAVIIYRVLI-SIPLFQN 476
F KINP+ G+K R+ + LV L+ SL+ +F+++ + Y VL S+ +
Sbjct: 118 FSKINPIKGLK-----------RLFSLQSLVELLKSLLKVFLVSFVAYFVLRNSLGELLS 166
Query: 477 SALRSFAQTVASVSGAVVNLFLIMAM 502
+L S Q + + +L +++ +
Sbjct: 167 LSLYSLVQAITNFLDIAKSLLILVLL 192
>gnl|CDD|221975 pfam13197, DUF4013, Protein of unknown function (DUF4013). This is
a family of uncharacterized proteins that is found in
archaea and bacteria.
Length = 167
Score = 29.1 bits (66), Expect = 4.8
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 445 MGLVFLMISLVFIFILAVIIYRVLISIPLFQNSALRSFAQTVASVSGAVVNLFLIMAM 502
GL +I LV+ I+ +II +L + F SA A V G ++ L LI+A+
Sbjct: 49 DGLKAFVIGLVY-LIIPIIILALLALLVGFAASASPGAA--GLGVFGLLLILLLILAI 103
>gnl|CDD|202956 pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain.
Length = 75
Score = 27.6 bits (62), Expect = 5.0
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 5/24 (20%)
Query: 442 IAGMGLVFLMISLVFIFILAVIIY 465
+ GMG+VF +F+ +L ++I
Sbjct: 9 VLGMGIVF-----LFLILLILLIS 27
>gnl|CDD|211357 cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar
proteins; BLMA confers bleomycin (Bm) resistance by
directly binding to Bm. BLMA also called Bleomycin
resistance protein, confers Bm resistance by directly
binding to Bm. Bm is a glycopeptide antibiotic produced
naturally by actinomycetes. It is a potent anti-cancer
drug, which acts as a strong DNA-cutting agent, thereby
causing cell death. BLMA is produced by actinomycetes to
protect themselves against their own lethal compound.
BLMA has two identically-folded subdomains, with the
same alpha/beta fold; these two halves have no sequence
similarity. BLMAs are dimers and each dimer binds to two
Bm molecules at the Bm-binding pockets formed at the
dimer interface; two Bm molecules are bound per dimer.
BLMA belongs to a conserved domain superfamily that is
found in a variety of structurally related
metalloproteins, including the bleomycin resistance
protein, glyoxalase I, and type I ring-cleaving
dioxygenases. As for the larger superfamily, this family
contains members with or without domain swapping.
Length = 112
Score = 28.3 bits (64), Expect = 6.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 390 ASLAHYWDVMGFTDEIERPRPEFA 413
SLA Y DV+GF + E P P +A
Sbjct: 11 KSLAFYRDVLGFEVDFEHPEPLYA 34
>gnl|CDD|191255 pfam05310, Tenui_NS3, Tenuivirus movement protein. This family of
ssRNA negative-strand crop plant tenuivirus proteins
appears to combine PV2, NS2, NS3, and PV3 proteins.
Plant viruses encode specific proteins known as movement
proteins (MPs) to control their spread through
plasmodesmata (PD) in walls between cells as well as
from leaf to leaf via vascular-dependent transport.
During this movement process, the virally encoded MPs
interact with viral genomes for transport from the viral
replication sites to the PDs in the walls of infected
cells along the cytoskeleton and/or endoplasmic
reticulum (ER) network. The virus is then thought to
move through the PDs in the form of MP-associated
ribonucleoprotein complexes or as virions. The NS3
protein appears to function as an RNA silencing
suppressor.
Length = 186
Score = 29.0 bits (65), Expect = 6.6
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 647 VPKVKAWFQRKKVQLSKSHLKTR 669
VPK K W K +LK
Sbjct: 96 VPKTKCWLCDKPSYQETDNLKFI 118
>gnl|CDD|224214 COG1295, Rbn, Ribonuclease BN family enzyme [Replication,
recombination, and repair].
Length = 303
Score = 29.2 bits (66), Expect = 7.5
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Query: 421 INPVTGVKEPSFPKSLRNTRIIAGMGLVFLMISLVFIFILAVIIYRVLISIPLFQNSALR 480
+N + VK R + +G + ++ + + ++ I + L+ F
Sbjct: 125 LNKIWRVKPRRSFIRRRLLSLFWTLGTLLPLLFALLLSVVGPIALQALLL--RFGLPFFD 182
Query: 481 SFAQTVASVSGAVVNLFLIMAMSNLY 506
+ + V L L + LY
Sbjct: 183 VLVLILLRLRLLVSLLLLTLGFFLLY 208
>gnl|CDD|165311 PHA03011, PHA03011, hypothetical protein; Provisional.
Length = 120
Score = 28.0 bits (62), Expect = 7.9
Identities = 9/36 (25%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 447 LVFLMISLVFIFILAVIIYRVLISIPLFQNSALRSF 482
+F + ++ I + +II +I+IP ++++ L F
Sbjct: 2 KLFFI-LIILISSIIIIILYKIINIPPYESNILNKF 36
>gnl|CDD|224705 COG1792, MreC, Cell shape-determining protein [Cell envelope
biogenesis, outer membrane].
Length = 284
Score = 29.2 bits (66), Expect = 8.6
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 448 VFLMISLVFIFILAVIIYRVLISIPLFQNSALRSFAQTVASVSGAVVNLFL 498
L L IF++ +I+ +L+ + Q V +V V ++
Sbjct: 3 FSLNKLL-KIFLVLIILLLLLLLFADSRGQVSSIIRQVVGTVLSPVQSVVA 52
>gnl|CDD|237888 PRK15050, PRK15050, 2-aminoethylphosphonate transport system
permease PhnU; Provisional.
Length = 296
Score = 28.8 bits (65), Expect = 9.6
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 441 IIAGMGLVFLMISLVFIFILAVIIYRVLISIP-LFQNSALRSFAQTVASVSGAVVNLFLI 499
+ AG L L+ +L I+ + ++++P L + A+ F A AVVNL L
Sbjct: 218 LAAGGSLCLLL-TLNEFGIVLFTGAKDVVTLPVLIYSKAIVDFDYPTACA-IAVVNLALS 275
Query: 500 MAMSNLYEKLALRLT 514
+ + LY ++ R
Sbjct: 276 LGLYALYRRVNRRAG 290
>gnl|CDD|235352 PRK05151, PRK05151, electron transport complex protein RsxA;
Provisional.
Length = 193
Score = 28.4 bits (64), Expect = 9.6
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 29/104 (27%)
Query: 436 LRNTRIIAGMGLVFLMISLVFIFILAVII--------------YRVL------------- 468
L NT I+ + L++L L FI ++AV++ YR+L
Sbjct: 58 LVNTYILIPLDLIYLRT-LAFILVIAVVVQFTEMVVRKTSPTLYRLLGIFLPLITTNCAV 116
Query: 469 ISIPLFQNSALRSFAQTVASVSGAVVNLFLIMAM-SNLYEKLAL 511
+ + L + +F Q+ GA V L++ + + + E+LA+
Sbjct: 117 LGVALLNINLGHNFLQSALYGFGAAVGFSLVLVLFAAIRERLAV 160
>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl
glycosylphosphotransferase. Members of this family are
generally found near other genes involved in the
biosynthesis of a variety of exopolysaccharides. These
proteins consist of two fused domains, an N-terminal
hydrophobic domain of generally low conservation and a
highly conserved C-terminal sugar transferase domain
(pfam02397). Characterized and partially characterized
members of this subfamily include Salmonella WbaP
(originally RfbP) , E. coli WcaJ , Methylobacillus EpsB,
Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B
Streptococcus CpsE (originally CpsD), and Streptococcus
suis Cps2E. Each of these is believed to act in
transferring the sugar from, for instance, UDP-glucose
or UDP-galactose, to a lipid carrier such as
undecaprenyl phosphate as the first (priming) step in
the synthesis of an oligosaccharide "block". This
function is encoded in the C-terminal domain. The
liposaccharide is believed to be subsequently
transferred through a "flippase" function from the
cytoplasmic to the periplasmic face of the inner
membrane by the N-terminal domain. Certain closely
related transferase enzymes such as Sinorhizobium ExoY
and Lactococcus EpsD lack the N-terminal domain and are
not found by this model.
Length = 445
Score = 29.1 bits (66), Expect = 9.8
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 453 SLVFIFILAVIIYRVLISIPLFQNSALRSFAQTVASVSGAVVNLFLIMAM 502
SL+ + IL + + + + L+++ RS + +A V A + +FL++
Sbjct: 30 SLLLLLILLLFLI-LFAASGLYRSWRGRSLLEELARVLLAWLLVFLLLLA 78
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.439
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,220,882
Number of extensions: 4136173
Number of successful extensions: 6281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6232
Number of HSP's successfully gapped: 104
Length of query: 786
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 681
Effective length of database: 6,280,432
Effective search space: 4276974192
Effective search space used: 4276974192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.0 bits)