RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15512
(786 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 2e-06
Identities = 73/438 (16%), Positives = 122/438 (27%), Gaps = 188/438 (42%)
Query: 346 YWQ-LSDICGYAKISYLFDHPGTVFYSVFVSFWAVTFLEYWKRKSASLAHY---WDVMGF 401
Y++ L D+ Y +Y H + F A T E + + + +++ +
Sbjct: 169 YFEELRDL--YQ--TY---HV---LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 402 -TDEIERPRPEFAARAPFQKINPVTGVKEPSFPKSLRNTRIIAGMGLVFLMISLVFIFIL 460
+ P ++ P S P I ++
Sbjct: 219 LENPSNTPDKDYLLSIPI------------SCP----------------------LIGVI 244
Query: 461 AVIIYRVLISIPLFQNSALRSFAQTVASVSGAVVNLFLIMAMSNLYEKLALRLTSWEMHR 520
+ Y V + F LRS+ + S +V I A + SWE
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI-AET----------DSWE--- 290
Query: 521 TQTEFDDSLTFKVFIFQFVNYYSSIFYIAFFKGRFVGCPGNYSKIWSLRNEDCRTGGCLI 580
F S+ + +F+I R N S + ED
Sbjct: 291 ---SFFVSV---------RKAITVLFFIGV---RCYEAYPNTS-LPPSILEDSLENNE-- 332
Query: 581 ELAQQLAVIMIGKQFFNNVKEVGVPKVKAWFQRKKCRTGGCLIELAQQLAVIMIGKQFFN 640
GVP + L++
Sbjct: 333 ----------------------GVP--------------------SPMLSIS-------- 342
Query: 641 NVKEVGVPKVKAWFQRKKVQLSKSHLKTRWEKDN-HLPINKGLFEEYLEMVLQFG---FI 696
+ +++VQ ++ K N HLP K +E+ L G +
Sbjct: 343 -----NLT-------QEQVQ---DYV----NKTNSHLPAGK-----QVEISLVNGAKNLV 378
Query: 697 TIFVAAFPLAPLFALLNNWVEIRLDAQKFLCQTRRVVP--ERAENIGIWFKILDMLAHLA 754
V+ P + L+ LN + + A L Q+R +P ER K+
Sbjct: 379 ---VSGPPQS-LYG-LNLTLR-KAKAPSGLDQSR--IPFSER--------KL-------- 414
Query: 755 VISNGFL-IA--FTSDFL 769
SN FL +A F S L
Sbjct: 415 KFSNRFLPVASPFHSHLL 432
Score = 43.5 bits (102), Expect = 3e-04
Identities = 46/249 (18%), Positives = 70/249 (28%), Gaps = 96/249 (38%)
Query: 124 QYAEELNM------RAPLQANVNPILNWSE---HLLQTL--RIPNIMSQDVPNKPTDYFT 172
Q ++E M + +V W+ H T I +I+ + P T +F
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDV-----WNRADNHFKDTYGFSILDIV-INNPVNLTIHFG 1677
Query: 173 GPFRRSKIHKYVGSDNQATFFSNAQRIRIVYEILSTALYGEKRKGEVGVD-RLVEEGIFL 231
G +RIR Y + E VD +L E IF
Sbjct: 1678 GE--------------------KGKRIRENYSAM---------IFETIVDGKLKTEKIFK 1708
Query: 232 SAFPLHDGTYYVAKDHSDQLN------PRQVLYEYWARWGRWYKYQPLSHIREYFGEKIA 285
T Y + L+ P L E A + ++
Sbjct: 1709 EINE--HSTSYTFRSEKGLLSATQFTQPALTLMEK-AAF---------EDLKSKGLIPAD 1756
Query: 286 IYFAW--LGFYTGWLLPAAIVGL--------LVFL------------------YGVVTMN 317
FA LG Y L A++ + +VF YG++ +N
Sbjct: 1757 ATFAGHSLGEYAA-L--ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 318 TNRVAHEIC 326
RVA
Sbjct: 1814 PGRVAASFS 1822
Score = 36.2 bits (83), Expect = 0.048
Identities = 34/168 (20%), Positives = 44/168 (26%), Gaps = 69/168 (41%)
Query: 359 SYLFDHPG-----TVF---------YSVFVSFWA-------VTF----L-EYWKRKSASL 392
SY F T F + F + TF L EY +A L
Sbjct: 1716 SYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY----AA-L 1770
Query: 393 AHYWDVMGFTDEIE--RPRPEFAARAPFQKINPVTGVKEPSFPKSLRNTRIIAGMGLVFL 450
A DVM +E R A P N +I
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMTMQVAV------------PRDELGRSNYGMI-------- 1810
Query: 451 MISLVFIFILAVIIYRVLISIPLFQNSALRSFAQTVASVSGA---VVN 495
A+ RV S F AL+ + V +G +VN
Sbjct: 1811 ----------AINPGRVAAS---FSQEALQYVVERVGKRTGWLVEIVN 1845
Score = 31.9 bits (72), Expect = 1.1
Identities = 104/671 (15%), Positives = 179/671 (26%), Gaps = 274/671 (40%)
Query: 67 SHGSSSEKKLAKYENWRTTFM--ANLERAGLQMEKEVIQTVNKKCVHFTKIHAPWSVLCQ 124
SHGS + Q++++ + + + F P +
Sbjct: 12 SHGSL-----------EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA-- 58
Query: 125 YAEELNMRAPLQANVNPILNWSEHLLQTLRIPNIMSQDVPNKPTDYFTGPFRRSK-IHKY 183
EL + L + L++ ++ V N F + IH
Sbjct: 59 ---ELVGK---------FLGYVSSLVEPSKVGQF--DQVLNLCLTEFENCYLEGNDIHAL 104
Query: 184 VGS---DNQATFFSNAQRIRIVYEILSTALYGEKRKGEVGVDRLVEEG------IFLSAF 234
+N T + I+ A +K + R V EG IF
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF---- 160
Query: 235 PLHDGTYYVAKDHSDQLNPRQVLYEYWARWGRWYKYQPLSHIREYFGEKIAIYFAWLGFY 294
G G Q + +YF E +Y +
Sbjct: 161 ----G-------------------------G-----Q--GNTDDYFEELRDLYQTYHVLV 184
Query: 295 TGWLLPAAIVGLLVFLYGVVTMNTNRVAHEICTTGDDITM-------------------- 334
+ +A L L + T A ++ T G +I
Sbjct: 185 GDLIKFSA--ETLSEL-----IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 335 CPL------------CDKELGCGYWQLSD-ICGYAKISYLFDHPGTVFYSVFVSF---W- 377
CPL K LG +L + G H + +V ++ W
Sbjct: 238 CPLIGVIQLAHYVVTA-KLLGFTPGELRSYLKG------ATGHSQGLVTAVAIAETDSWE 290
Query: 378 --------AVTFL--------EYWKRKSASLAHYWD--------------VMGFT-DEIE 406
A+T L E + S + D + T ++++
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 407 RPRPEFAARAPFQK------IN-P----VTGVKEPSFPKSL-------RNTRIIAGM--- 445
+ + P K +N V+G P+SL R + +G+
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSG-----PPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 446 -----------GLVFLMISLVF----------IFILAVIIYRVLIS-----IPLFQ---N 476
FL ++ F + ++ V + IP++
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 477 SALRSFAQTVASVSGAVVNLFLIMAMSNLYEKLALRLTSWEMHRTQTEFDDS--LTFKVF 534
S LR + S+S +V+ + + + WE T T+F + L F
Sbjct: 466 SDLRVLS---GSISERIVDCIIRLPV------------KWE---TTTQFKATHILDF--- 504
Query: 535 IFQFVNYYSSIFYIAFFKGRFVGCPGNYSKIWSL--RNEDCRTGGCLIELAQQLAVIMIG 592
G PG S + L RN+D TG + VI+ G
Sbjct: 505 ------------------G-----PGGASGLGVLTHRNKD-GTG---------VRVIVAG 531
Query: 593 KQFFNNVKEVG 603
N + G
Sbjct: 532 TLDINPDDDYG 542
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 3e-05
Identities = 77/549 (14%), Positives = 143/549 (26%), Gaps = 189/549 (34%)
Query: 3 EEWDSYGISRQSSHDSRA--------DQNKTGAQNYPSSFSGKLTYFRDGRRKIDYVLVY 54
EE D I S + + Q F + +I+Y +
Sbjct: 49 EEIDH--IIMSKDAVSGTLRLFWTLLSKQEEMVQ-----------KFVEEVLRINYKFLM 95
Query: 55 EYV------PSGRCSSSSSHGS---SSEKKLAKYENWRTTFMANLERAGLQMEK------ 99
+ PS + + AKY R L +A L++
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 100 -------------EVIQTVNKKCVHFTKIHAPW----------SVL-----------CQY 125
+V + +C KI W +VL +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 126 AEELNMRAPLQANVNPILNWSEHLLQTLRIPN---IMSQDVPNKPT-DYFTGPFRRSKIH 181
+ + ++ ++ I LL++ N ++ +V N + F KI
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNL---SCKI- 268
Query: 182 KYVGSDNQ--ATFFSNAQRIRIVYEILSTALYGEKRKG------EVGVDRLVEEGIFLSA 233
+ + + F S A I + S L ++ K + L E L+
Sbjct: 269 -LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--LTT 325
Query: 234 FPLHDGTYYVAKDHSDQLNPRQVLYEYWARWGRW--YKYQPLSHI-------------RE 278
P +A+ D L W W L+ I R+
Sbjct: 326 NPRRLSI--IAESIRDGLA----------TWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 279 YFGEKIAIYFAWLGFYTGWLLPAAIVGLL------------------------------V 308
F +++++ F +P ++ L+ +
Sbjct: 374 MF-DRLSV------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 309 FLYGV-----VTMNTNRVAHEICTTGDDITMCPLCDKELGC----GYWQLSDICGYAKIS 359
+ + V + H +I +L Y+ Y+ I
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKT-FDSDDLIPPYLDQYF-------YSHIG 478
Query: 360 Y-LF----DHPGTVFYSVFVSFWAVTFLE--------YWKRKSASLAHYWDVMGFTDEIE 406
+ L T+F VF+ F FLE W + L + + I
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDF---RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 407 RPRPEFAAR 415
P++
Sbjct: 536 DNDPKYERL 544
Score = 42.5 bits (99), Expect = 6e-04
Identities = 43/335 (12%), Positives = 83/335 (24%), Gaps = 101/335 (30%)
Query: 464 IYRVLISIPLFQNSALRSFAQTVASVSGAVVNLFLIMAMSNLYEKLALRLTSWEMHRTQT 523
R+ ++ Q ++ F + V ++ Y+ + M +T
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRIN---------------YK--------FLMSPIKT 100
Query: 524 EFDD-SLTFKVFIFQFVNYYSSIFYIAFFKGRFVGCPGNYSKIWSLRNEDCRTGGCLIEL 582
E S+ +++I Q Y+ F V LR L+EL
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYND---NQVFAKYNVSRL---QPYLKLRQ-------ALLEL 147
Query: 583 AQQLAVI---M--IGKQ---------------FFNNVKEVGVPKVKAWFQRKKCRTGGCL 622
V+ + GK + W K C + +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI---------FWLNLKNCNSPETV 198
Query: 623 IELAQQLAVIMIGKQFFNNVKEVGVPKVKAWFQRKKVQLSKSHLKTR--------WEK-- 672
+E+ Q+L + + + Q + +L KS
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 673 ----DNHLPI-----NKGLFEEYLEMVLQFGFITIFVAAFPLAPLFALLNNWVEIRLDAQ 723
+ I K + + + + +LL +++ R
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD- 317
Query: 724 KFLCQTRRVVPERAENIG------IWFKILDMLAH 752
+P I I D LA
Sbjct: 318 ---------LPREVLTTNPRRLSIIAESIRDGLAT 343
Score = 39.5 bits (91), Expect = 0.005
Identities = 96/728 (13%), Positives = 185/728 (25%), Gaps = 282/728 (38%)
Query: 147 EHLLQTLRIPNIMSQDVPNKPTDYFTGPFRRSKIHKYVGSDNQATFFSNAQRIRIVYEIL 206
+ N +DV D + +I + S + ++ L
Sbjct: 23 SVFEDAF-VDNFDCKDVQ----DMPKSILSKEEIDHIIMSKD------AVSGTLRLFWTL 71
Query: 207 STALYGEKRKGEVGVDRLVEEGI-----FL-SAF------PLHDGTYYVAKDHSDQLNPR 254
K E V + VEE + FL S P Y+ + N
Sbjct: 72 -------LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-RDRLYNDN 123
Query: 255 QVLYEYWARWGRWYKYQPLSHIREYFGEKIAIYFAWLGFYTGWLL---PAAIVGLLVFLY 311
QV +Y + QP +R+ LL PA V +
Sbjct: 124 QVFAKYNV-----SRLQPYLKLRQ------------------ALLELRPAKNV----LID 156
Query: 312 GVVTMNTNRVAHEICTTGDDITMCPLCDKELGCGYWQL-SDICGYAKISYLFDHPGTVFY 370
G + LG G + D+C K+ D
Sbjct: 157 G---------------------V-------LGSGKTWVALDVCLSYKVQCKMD------- 181
Query: 371 SVFVSFWAVTFLEYWKRKSASLAHYWDVMGFTDEIERPRPEFAARAPFQKINPVTG---- 426
F FW + L ++ D R + ++ +I+ +
Sbjct: 182 --FKIFW-LNLKNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQAELRR 236
Query: 427 -VKEPSFPKSL------RNTRIIAGMGLVFLMISLVFIFILAVIIYRVLISIPLFQNSAL 479
+K + L +N + F L+ ++L+
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNA-------------FNLSC---KILL---------T 271
Query: 480 RSFAQTVASVSGAVVNLFLIMAMSNLYEKLALRLTSWEMHRTQTEFDDSLTFKVFIFQFV 539
F Q +S A ++L S + + +
Sbjct: 272 TRFKQVTDFLSAAT------------TTHISLDHHSMTLTPDEVK--------------- 304
Query: 540 NYYSSIFYIAFFKGRFVGCPGNYSKIWSLRNEDCRTGGCLIELAQQLAVIMIGKQF---- 595
S+ +++ C + L E T + +I +
Sbjct: 305 ----SLL------LKYLDC-----RPQDLPREVLTTN--------PRRLSIIAESIRDGL 341
Query: 596 --FNNVKEVGVPKVKAWFQRKKCRTGGCLIELA--------QQLAVIMIGKQFFNNVKEV 645
++N K V K+ + L L +L+V F +
Sbjct: 342 ATWDNWKHVNCDKLTTIIES-------SLNVLEPAEYRKMFDRLSV------FPPSAH-- 386
Query: 646 GVP-KV--KAWFQRKK-------VQLSKS-----------------HLKTRWEKDNHLPI 678
+P + WF K +L K +L+ + + +N +
Sbjct: 387 -IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 679 NKGLFEEY----------LEMVLQFGFITIFVA-------------AFPLAPLFALLN-N 714
++ + + Y L + + F + +F L+
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM--VF--LDFR 501
Query: 715 WVEIRLDAQKFLCQTRRVVPERAENIGIWFK-ILDMLAHLAVISNGFLIAFTSDFLPKL- 772
++E ++ + + + + I D + N L DFLPK+
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL-----DFLPKIE 556
Query: 773 --LYQYEH 778
L ++
Sbjct: 557 ENLICSKY 564
Score = 35.2 bits (80), Expect = 0.11
Identities = 99/667 (14%), Positives = 185/667 (27%), Gaps = 233/667 (34%)
Query: 95 LQMEKEVIQTVNKKCVH-----FTKIHAPWSVLCQYAEELNMRAPL-QANVNPILNWSEH 148
+ E Q K + F + C+ +++ ++ L + ++ I+ +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVD-----NFDCKDVQDM-PKSILSKEEIDHIIMSKDA 60
Query: 149 LLQTLRIPNIMSQDVPNKPTDYFTG-------PFRRSKIHK-----------YVG----- 185
+ TLR+ + + F F S I Y+
Sbjct: 61 VSGTLRLFWTL-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 186 -SDNQATFFS--NAQRIRIVYEILSTALYGEKRKGEVGVD--------RLVEEGI----F 230
+DNQ F+ N R++ + L AL + V +D + +
Sbjct: 120 YNDNQV--FAKYNVSRLQPYLK-LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 231 LSAFPLHDGTYY--VAKDHSDQ--LNPRQVLYEYWARWGRWYKYQPLSHIREYFGEKIAI 286
++ + +S + L Q L Y+ P R I +
Sbjct: 177 QCKMD--FKIFWLNLKNCNSPETVLEMLQKLL---------YQIDPNWTSRSDHSSNIKL 225
Query: 287 YFAWL-----GFYTGWLLPAAIVGLLVFLYGVVTMNTNRVAHEICTTGDDITMCPLCDKE 341
+ LLV ++ + +
Sbjct: 226 RIHSIQAELRRLLKSKPYENC---LLVL--------------------LNV-----QNAK 257
Query: 342 LGCGYWQLSDI-CGYAKISYLFDHPGTVFYSVFVSFWAVTFLEYWKRKSASLAHYWDVMG 400
W ++ C KI L T F V FL SL H+
Sbjct: 258 A----WNAFNLSC---KI--LLT---TRFKQV------TDFLSAATTTHISLDHHSM--T 297
Query: 401 FT-DEIERPRPEFAARA--------PFQ--KINP-VTGVKEPSFPKSLRN---------- 438
T DE++ + P + NP + +S+R+
Sbjct: 298 LTPDEVK----SLLLKYLDCRPQDLPREVLTTNPRRLSI----IAESIRDGLATWDNWKH 349
Query: 439 ------TRIIAGMGLVFL-------MISLVFIFILAVIIYRVLISIPLFQNSALRSFAQT 485
T II L L M + +F + I +L+S+ ++ +
Sbjct: 350 VNCDKLTTIIE-SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL-IWFDV-------- 399
Query: 486 VASVSGAVVNLFLIMAMSNLYEK--------LALRLT-----SWEMHRT-------QTEF 525
+ S VVN ++ K + L L + +HR+ F
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 526 D-DSLTFKV---FIFQFVNY---------YSSIFYIAFFKGRFVGCPGNYSKIWSLRNED 572
D D L + + + + ++F + F RF+ KI R++
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-----QKI---RHDS 511
Query: 573 --CRTGGCLIELAQQLAVIMIGKQFFNN-------VKEVG--VPKVKAWFQRKKCRTGGC 621
G ++ QQL +N V + +PK++ K
Sbjct: 512 TAWNASGSILNTLQQL--KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT---D 566
Query: 622 LIELAQQ 628
L+ +A
Sbjct: 567 LLRIALM 573
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.15
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 19/45 (42%)
Query: 98 EKEVIQTVNKKCVHFTKIHAPWSVLCQYAEELNMRAP---LQANV 139
EK+ + KK K++A S AP ++A +
Sbjct: 18 EKQAL----KKLQASLKLYADDS------------APALAIKATM 46
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane
protein, DNA protein, contractIle protein, cell
adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria
gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Length = 158
Score = 30.3 bits (67), Expect = 1.3
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 447 LVFLMISLVFIFILAVIIYRVLISIPLFQNSALRSFAQTVASVSGAVVNLFLIMAMSN 504
L+ LMI + + ILA +++P +Q+ R+ ++ + +++
Sbjct: 3 LIELMIVIAIVGILAA------VALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNH 54
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD;
1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Length = 448
Score = 30.9 bits (70), Expect = 1.8
Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 36/128 (28%)
Query: 1 DHEEWDSYGISRQSSHDSRADQNKTGAQNYPSSFSGKLTYFRDGRRKIDYVLVYEYVP-- 58
++ ++ + +S +R + Q P F + R +D +V P
Sbjct: 73 ENFTFEGW----FTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMV-MVSPPD 127
Query: 59 -SGRCSSSSSHGSSSEKKLAKYENWRTTFMANLERAGLQMEKEVIQTVNKK--------C 109
+G C S + ++ K V+ VN +
Sbjct: 128 HNGFCCVGVSSDYT--------------------MQAIKSAKIVLAEVNDQVPVVYGDTF 167
Query: 110 VHFTKIHA 117
VH ++I
Sbjct: 168 VHVSEIDK 175
>2rk9_A Glyoxalase/bleomycin resistance protein/dioxygena; NYSGXRC,
structural genomics, protein structur initiative II;
1.60A {Vibrio splendidus}
Length = 145
Score = 29.2 bits (65), Expect = 2.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 390 ASLAHYWDVMGFTDEIERPRPEFA 413
S + + DV+GF + ERP EF
Sbjct: 18 VSQSFFVDVLGFEVKYERPDEEFV 41
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 3.0
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 606 KVKAWFQRKKCRTGGCLIELAQQLAVIMIGKQFFNNVKEVGVPKVKAWFQRKKVQLSKSH 665
++ W + ++ R L EL K +E ++ W QR+ Q+ K+
Sbjct: 86 SIRKWREEQRKR----LQELDAA------SKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 666 LKTR-WEKD 673
+ R +K
Sbjct: 136 INNRIADKA 144
>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
protein transport; 2.00A {Arabidopsis thaliana}
Length = 359
Score = 29.6 bits (67), Expect = 3.8
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 638 FFNNVKEVGVPKVKAWFQRKKVQLSKSHLKTRWEKDNHLPINKG-----LFEEYLEMVL 691
FF + + K K+ ++ SK+ + D L + +E LE L
Sbjct: 41 FFTRLGRLIKEKAKSDVEKVFSGFSKTR-ENLAVIDELLLFWNLAETDRVLDE-LEEAL 97
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.05A {Porphyromonas gingivalis}
Length = 434
Score = 29.7 bits (67), Expect = 4.5
Identities = 20/128 (15%), Positives = 35/128 (27%), Gaps = 36/128 (28%)
Query: 1 DHEEWDSYGISRQSSHDSRADQNKTGAQNYPSSFSGKLTYFRDGRRKIDYVLVYEYVP-- 58
H + +SR + A P F + R ID +V +
Sbjct: 77 PHFRHITN----FVGGNSRKAVEENRADFIPVFFYEVPSMIRKDILHIDVAIV-QLSMPD 131
Query: 59 -SGRCSSSSSHGSSSEKKLAKYENWRTTFMANLERAGLQMEKEVIQTVNKK--------C 109
+G CS S S + + VI +N++
Sbjct: 132 ENGYCSFGVSCDYS--------------------KPAAESAHLVIGEINRQMPYVHGDNL 171
Query: 110 VHFTKIHA 117
+H +K+
Sbjct: 172 IHISKLDY 179
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: COA; 2.40A {Shewanella oneidensis}
Length = 436
Score = 28.5 bits (64), Expect = 9.9
Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 32/114 (28%)
Query: 15 SHDSRADQNKTGAQNYPSSFSGKLTYFRDGRRKIDYVLVYEYVP---SGRCSSSSSHGSS 71
+R A P S FR G +KID ++ + P G CS S ++
Sbjct: 78 GVPTRPLLQSGDADYVPIFLSEVPKLFRSGEQKIDTAII-QVSPPDKHGMCSLGISVEAT 136
Query: 72 SEKKLAKYENWRTTFMANLERAGLQMEKEVIQTVNKK--------CVHFTKIHA 117
A Q+ ++I +N + +H + A
Sbjct: 137 --------------------LAACQVAGKIIAHINPQMPRTHGDGFIHIDRFAA 170
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.439
Gapped
Lambda K H
0.267 0.0587 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,445,907
Number of extensions: 757587
Number of successful extensions: 1939
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1929
Number of HSP's successfully gapped: 23
Length of query: 786
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 685
Effective length of database: 3,881,772
Effective search space: 2659013820
Effective search space used: 2659013820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.6 bits)