RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15512
         (786 letters)



>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
           thermophilus, strain hb27 [TaxId: 274]}
          Length = 110

 Score = 28.7 bits (64), Expect = 1.0
 Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 5/77 (6%)

Query: 91  ERAGLQMEKEVIQ---TVNKKCVHFTKIHAPWSVLCQYAEELNMRAPLQANVNPILNWSE 147
           E   L+   + +Q       K V         +++ +          L+  +       E
Sbjct: 36  EVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLE 95

Query: 148 HLLQTLRIPNIMSQDVP 164
            LL  L++P       P
Sbjct: 96  ALL--LQVPLPPWPGAP 110


>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
          Length = 158

 Score = 29.2 bits (64), Expect = 1.0
 Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 447 LVFLMISLVFIFILAVIIYRVLISIPLFQNSALRSFAQTVASVSGAVVNLFLIMAMSN 504
           L+ LMI +  + ILA +       +P +Q+   R+       ++    +      +++
Sbjct: 3   LIELMIVIAIVGILAAVA------LPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNH 54


>d1mrja_ d.165.1.1 (A:) alpha-Trichosanthin {Mongolian snake gourd
           (Trichosanthes kirilowii Maxim.) [TaxId: 3677]}
          Length = 247

 Score = 28.4 bits (63), Expect = 3.4
 Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 1/33 (3%)

Query: 751 AHLAVISNGFLIAFTSDFLPK-LLYQYEHNWSL 782
           A    I           FLP   +   E++WS 
Sbjct: 162 ARYKFIEQQIGKRVDKTFLPSLAIISLENSWSA 194


>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction
           centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
          Length = 38

 Score = 24.8 bits (54), Expect = 4.6
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 281 GEKIAIYFAWLGF-YTGWLLPAAIVGLLVFLY 311
           G   A +  W+      WL+P  ++GLL FLY
Sbjct: 3   GSYAASFLPWIFIPVVCWLMPTVVMGLL-FLY 33


>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
           (Rattus rattus) [TaxId: 10117]}
          Length = 78

 Score = 25.9 bits (56), Expect = 5.6
 Identities = 8/65 (12%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 608 KAWFQRKKCRTGGCLIELAQQLAVIMIGKQFFNNVKEVGVP-------KVKAWFQRKKVQ 660
              ++R+K  +      L ++       ++  +  +  G+        +V  WF  ++ +
Sbjct: 13  FQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 72

Query: 661 LSKSH 665
            +  H
Sbjct: 73  EAFRH 77


>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359
           {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 365

 Score = 27.2 bits (59), Expect = 9.5
 Identities = 16/166 (9%), Positives = 41/166 (24%), Gaps = 6/166 (3%)

Query: 274 SHIREYFGEKIAIYFAWLGFYTGWLLPAAIV----GLLVFLYGVVTMNTNRVAHEICTTG 329
             I + FGE + ++ A +           ++    G    +   +             + 
Sbjct: 54  PEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSV 113

Query: 330 DDITMCPLCDKELGCGYWQLSDICGYAKISYLFDHPGTVFYSVFVSFWAVTFLEYWKRKS 389
             + + P+  ++       + +I  +     + + P  +  + +     +      +   
Sbjct: 114 HLVEINPVLRQKQQTLLAGIRNIHWHDSFEDVPEGPAVILANEYFDVLPIHQAIKRETGW 173

Query: 390 ASLA--HYWDVMGFTDEIERPRPEFAARAPFQKINPVTGVKEPSFP 433
                               P P F A  P        G      P
Sbjct: 174 HERVIEIGASGELVFGVAADPIPGFEALLPPLARLSPPGAVFEWRP 219


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,099,919
Number of extensions: 150877
Number of successful extensions: 475
Number of sequences better than 10.0: 1
Number of HSP's gapped: 474
Number of HSP's successfully gapped: 13
Length of query: 786
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 693
Effective length of database: 1,130,706
Effective search space: 783579258
Effective search space used: 783579258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.5 bits)