Query psy15513
Match_columns 77
No_of_seqs 113 out of 337
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 23:14:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pdn_C Protein (PRD paired); p 99.7 1.3E-17 4.5E-22 100.6 7.0 74 2-75 30-103 (128)
2 1k78_A Paired box protein PAX5 99.7 1.2E-16 4.1E-21 100.3 9.4 74 2-75 45-118 (149)
3 2k27_A Paired box protein PAX- 99.6 1.7E-16 5.8E-21 100.8 4.6 74 2-75 38-111 (159)
4 1u78_A TC3 transposase, transp 99.4 2.6E-13 8.9E-18 83.3 6.5 69 2-75 19-87 (141)
5 3hot_A Transposable element ma 99.3 5.2E-12 1.8E-16 87.2 7.6 69 2-75 19-96 (345)
6 2pjp_A Selenocysteine-specific 98.8 1.3E-09 4.4E-14 67.0 2.6 72 4-75 19-90 (121)
7 1tc3_C Protein (TC3 transposas 98.8 8.9E-10 3E-14 56.2 1.4 33 2-34 18-50 (51)
8 2jn6_A Protein CGL2762, transp 98.5 7.7E-08 2.6E-12 56.3 3.9 30 5-34 23-52 (97)
9 1hlv_A CENP-B, major centromer 98.3 4.5E-06 1.5E-10 50.6 8.2 69 3-73 22-102 (131)
10 2elh_A CG11849-PA, LD40883P; s 98.3 2.8E-07 9.4E-12 53.4 2.6 33 3-35 36-68 (87)
11 2glo_A Brinker CG9653-PA; prot 98.3 2.3E-07 7.7E-12 50.2 1.5 32 3-34 19-54 (59)
12 1jko_C HIN recombinase, DNA-in 98.2 1.7E-07 5.7E-12 48.1 0.1 27 3-29 19-45 (52)
13 2rn7_A IS629 ORFA; helix, all 98.1 1.2E-06 4.1E-11 51.9 1.9 31 5-35 30-60 (108)
14 2x48_A CAG38821; archeal virus 98.1 1.2E-06 4E-11 46.2 1.4 27 2-28 28-54 (55)
15 3jth_A Transcription activator 98.1 6.1E-06 2.1E-10 47.9 4.6 60 1-60 32-91 (98)
16 3cuo_A Uncharacterized HTH-typ 98.0 3.5E-06 1.2E-10 48.4 3.2 57 5-61 38-94 (99)
17 2kko_A Possible transcriptiona 97.9 4.3E-06 1.5E-10 49.9 2.5 59 3-61 36-94 (108)
18 2htj_A P fimbrial regulatory p 97.8 2.9E-05 9.9E-10 43.9 4.8 35 4-38 13-47 (81)
19 1z4h_A TORI, TOR inhibition pr 97.8 3.3E-05 1.1E-09 42.5 3.9 53 6-63 11-64 (66)
20 2oa4_A SIR5; structure, struct 97.7 2.2E-05 7.4E-10 47.5 3.3 33 3-35 48-80 (101)
21 2w7n_A TRFB transcriptional re 97.7 2.1E-05 7E-10 47.5 2.9 54 3-57 32-86 (101)
22 2jrt_A Uncharacterized protein 97.7 3.3E-05 1.1E-09 46.0 3.6 36 3-38 47-82 (95)
23 2oqg_A Possible transcriptiona 97.7 2E-05 6.7E-10 46.4 2.6 58 4-61 33-90 (114)
24 2vz4_A Tipal, HTH-type transcr 97.7 0.00023 7.8E-09 42.5 7.4 63 5-75 1-68 (108)
25 3pqk_A Biofilm growth-associat 97.7 2.5E-05 8.7E-10 45.6 2.7 48 3-50 34-81 (102)
26 1u2w_A CADC repressor, cadmium 97.7 2.6E-05 8.8E-10 47.3 2.7 51 4-54 55-105 (122)
27 3f6v_A Possible transcriptiona 97.7 2.5E-05 8.4E-10 49.5 2.7 61 2-62 68-128 (151)
28 1jhg_A Trp operon repressor; c 97.6 3E-05 1E-09 46.8 2.8 29 4-33 56-85 (101)
29 1zx4_A P1 PARB, plasmid partit 97.6 9E-05 3.1E-09 49.1 5.3 68 3-74 22-92 (192)
30 4fcy_A Transposase; rnaseh, DD 97.6 0.00014 4.9E-09 52.7 6.8 70 3-72 46-128 (529)
31 1j9i_A GPNU1 DBD;, terminase s 97.6 2.4E-05 8.1E-10 43.2 2.1 29 6-40 3-31 (68)
32 3f6o_A Probable transcriptiona 97.6 1.9E-05 6.4E-10 47.5 1.5 59 3-61 29-87 (118)
33 1oyi_A Double-stranded RNA-bin 97.6 5E-05 1.7E-09 44.3 3.1 37 2-38 27-63 (82)
34 1r1u_A CZRA, repressor protein 97.6 3.9E-05 1.3E-09 45.3 2.7 39 3-41 37-75 (106)
35 1q1h_A TFE, transcription fact 97.6 7.6E-05 2.6E-09 44.0 3.9 67 5-74 33-105 (110)
36 2d1h_A ST1889, 109AA long hypo 97.5 6.1E-05 2.1E-09 43.3 3.0 38 3-40 34-71 (109)
37 2jml_A DNA binding domain/tran 97.5 0.00043 1.5E-08 39.2 6.4 66 5-75 5-74 (81)
38 2jpc_A SSRB; DNA binding prote 97.5 0.00013 4.6E-09 38.6 3.8 33 3-35 11-43 (61)
39 1r1t_A Transcriptional repress 97.5 6.1E-05 2.1E-09 45.9 2.6 41 2-42 56-96 (122)
40 1iuf_A Centromere ABP1 protein 97.5 0.00057 1.9E-08 42.6 7.2 70 4-73 29-109 (144)
41 2o8x_A Probable RNA polymerase 97.5 0.00018 6.1E-09 38.8 4.3 30 3-32 29-58 (70)
42 2heo_A Z-DNA binding protein 1 97.5 9.2E-05 3.1E-09 40.9 3.1 34 5-38 25-58 (67)
43 1r8d_A Transcription activator 97.5 0.00039 1.3E-08 41.4 6.1 64 6-75 3-69 (109)
44 1fse_A GERE; helix-turn-helix 97.4 0.00013 4.6E-09 39.7 3.6 30 3-32 24-53 (74)
45 1ub9_A Hypothetical protein PH 97.4 0.0001 3.4E-09 42.1 3.1 57 4-60 29-88 (100)
46 2jsc_A Transcriptional regulat 97.4 3.1E-05 1.1E-09 46.7 0.9 49 3-51 32-80 (118)
47 1qgp_A Protein (double strande 97.4 0.00013 4.3E-09 41.6 3.4 34 5-38 31-64 (77)
48 3tgn_A ADC operon repressor AD 97.4 0.00014 4.8E-09 43.9 3.8 42 3-44 49-90 (146)
49 1xn7_A Hypothetical protein YH 97.4 0.00016 5.6E-09 41.4 3.8 40 4-43 14-55 (78)
50 2w48_A Sorbitol operon regulat 97.4 0.00015 5E-09 50.1 4.2 40 3-42 19-58 (315)
51 3uj3_X DNA-invertase; helix-tu 97.4 2.3E-05 7.7E-10 50.7 0.0 32 1-32 154-185 (193)
52 2zkz_A Transcriptional repress 97.4 4E-05 1.4E-09 44.9 1.1 56 4-60 40-95 (99)
53 2frh_A SARA, staphylococcal ac 97.4 0.00041 1.4E-08 41.8 5.5 56 4-59 52-110 (127)
54 1ku9_A Hypothetical protein MJ 97.4 0.00014 4.9E-09 43.7 3.4 42 3-44 39-80 (152)
55 3eco_A MEPR; mutlidrug efflux 97.4 0.00041 1.4E-08 41.5 5.3 52 4-55 46-100 (139)
56 1je8_A Nitrate/nitrite respons 97.3 0.0002 6.8E-09 40.7 3.6 31 3-33 34-64 (82)
57 1uxc_A FRUR (1-57), fructose r 97.3 0.00019 6.4E-09 39.7 3.3 22 6-27 1-22 (65)
58 1jgs_A Multiple antibiotic res 97.3 0.00082 2.8E-08 40.0 6.3 53 4-56 47-102 (138)
59 3gp4_A Transcriptional regulat 97.3 0.002 6.9E-08 40.3 8.3 65 5-75 2-69 (142)
60 2lkp_A Transcriptional regulat 97.3 0.0003 1E-08 41.8 4.0 38 4-41 44-81 (119)
61 3jw4_A Transcriptional regulat 97.3 0.00059 2E-08 41.4 5.4 52 4-55 56-110 (148)
62 3o9x_A Uncharacterized HTH-typ 97.3 0.00045 1.5E-08 41.9 4.8 51 3-71 82-132 (133)
63 2fbh_A Transcriptional regulat 97.3 0.00039 1.3E-08 41.7 4.5 42 4-45 51-92 (146)
64 2gxg_A 146AA long hypothetical 97.3 0.00099 3.4E-08 39.9 6.3 54 3-56 48-104 (146)
65 2pij_A Prophage PFL 6 CRO; tra 97.3 0.00015 5.3E-09 39.0 2.4 24 3-27 12-35 (67)
66 2jt1_A PEFI protein; solution 97.2 0.00036 1.2E-08 39.9 3.9 34 6-39 25-58 (77)
67 3oop_A LIN2960 protein; protei 97.2 0.00065 2.2E-08 40.9 5.3 52 4-55 50-104 (143)
68 1q06_A Transcriptional regulat 97.2 0.0018 6.1E-08 40.1 7.4 62 6-75 1-67 (135)
69 3nrv_A Putative transcriptiona 97.2 0.00086 2.9E-08 40.5 5.8 54 4-57 53-109 (148)
70 3hug_A RNA polymerase sigma fa 97.2 0.00045 1.6E-08 39.6 4.3 29 3-31 51-79 (92)
71 1y0u_A Arsenical resistance op 97.2 0.00027 9.3E-09 40.8 3.3 36 4-39 42-77 (96)
72 3ech_A MEXR, multidrug resista 97.2 0.00067 2.3E-08 40.9 5.2 53 4-56 50-105 (142)
73 2l8n_A Transcriptional repress 97.2 0.00084 2.9E-08 37.2 5.1 42 6-63 10-51 (67)
74 2p7v_B Sigma-70, RNA polymeras 97.2 0.00054 1.8E-08 37.2 4.3 29 4-32 24-52 (68)
75 4aik_A Transcriptional regulat 97.2 0.00048 1.7E-08 42.7 4.6 43 4-46 45-87 (151)
76 3bro_A Transcriptional regulat 97.2 0.00045 1.5E-08 41.3 4.3 41 5-45 50-90 (141)
77 2dg6_A Putative transcriptiona 97.2 0.0014 4.7E-08 44.0 7.0 66 6-75 1-68 (222)
78 3k0l_A Repressor protein; heli 97.2 0.001 3.4E-08 41.1 5.9 53 4-56 59-114 (162)
79 1s7o_A Hypothetical UPF0122 pr 97.2 0.00048 1.6E-08 41.7 4.3 29 3-31 36-64 (113)
80 3g3z_A NMB1585, transcriptiona 97.2 0.001 3.5E-08 40.1 5.8 53 4-56 44-99 (145)
81 1x3u_A Transcriptional regulat 97.2 0.00039 1.3E-08 38.4 3.5 31 3-33 29-59 (79)
82 1qbj_A Protein (double-strande 97.2 0.00046 1.6E-08 39.7 3.9 34 5-38 27-60 (81)
83 2cw1_A SN4M; lambda CRO fold, 97.2 0.00024 8.1E-09 39.5 2.6 22 7-28 15-36 (65)
84 1rzs_A Antirepressor, regulato 97.2 6.7E-05 2.3E-09 40.7 0.3 23 4-26 9-31 (61)
85 2hin_A GP39, repressor protein 97.2 0.00031 1.1E-08 39.7 3.1 21 7-27 12-32 (71)
86 2xi8_A Putative transcription 97.2 0.00029 9.9E-09 37.1 2.8 25 3-27 12-36 (66)
87 3hh0_A Transcriptional regulat 97.2 0.0019 6.5E-08 40.6 7.0 66 4-75 3-71 (146)
88 2hr3_A Probable transcriptiona 97.2 0.0012 4E-08 39.8 5.8 54 3-56 48-104 (147)
89 3plo_X DNA-invertase; resolvas 97.2 6.2E-05 2.1E-09 48.7 0.0 31 1-31 154-184 (193)
90 3s2w_A Transcriptional regulat 97.1 0.00087 3E-08 41.2 5.2 51 4-54 63-116 (159)
91 3bj6_A Transcriptional regulat 97.1 0.0013 4.6E-08 39.7 6.0 51 4-54 53-106 (152)
92 1lj9_A Transcriptional regulat 97.1 0.0012 3.9E-08 39.6 5.6 51 4-54 42-95 (144)
93 1ku3_A Sigma factor SIGA; heli 97.1 0.00076 2.6E-08 37.1 4.4 29 4-32 29-57 (73)
94 3bdd_A Regulatory protein MARR 97.1 0.00061 2.1E-08 40.6 4.2 41 4-44 44-84 (142)
95 4hbl_A Transcriptional regulat 97.1 0.00077 2.6E-08 41.1 4.7 55 4-58 54-111 (149)
96 3fm5_A Transcriptional regulat 97.1 0.001 3.5E-08 40.4 5.3 53 4-56 53-108 (150)
97 2k02_A Ferrous iron transport 97.1 0.00024 8.2E-09 41.7 2.3 33 6-38 17-49 (87)
98 2rdp_A Putative transcriptiona 97.1 0.0015 5E-08 39.4 5.9 51 4-54 55-108 (150)
99 1gdt_A GD resolvase, protein ( 97.1 0.00025 8.6E-09 45.3 2.5 27 2-28 155-181 (183)
100 3hsr_A HTH-type transcriptiona 97.1 0.0003 1E-08 42.5 2.8 51 4-54 49-102 (140)
101 1z7u_A Hypothetical protein EF 97.1 0.00029 1E-08 41.9 2.6 49 3-51 33-85 (112)
102 3nqo_A MARR-family transcripti 97.1 0.0016 5.5E-08 41.5 6.2 52 3-54 55-109 (189)
103 3c57_A Two component transcrip 97.1 0.00077 2.6E-08 39.2 4.3 33 3-35 40-72 (95)
104 2fu4_A Ferric uptake regulatio 97.1 0.00058 2E-08 38.3 3.6 37 4-40 32-73 (83)
105 2hzt_A Putative HTH-type trans 97.1 0.00039 1.3E-08 41.1 2.9 44 2-45 24-68 (107)
106 1z91_A Organic hydroperoxide r 97.1 0.00057 2E-08 41.2 3.7 42 4-45 53-94 (147)
107 2l0k_A Stage III sporulation p 97.1 0.0002 6.7E-09 42.4 1.6 26 3-28 18-43 (93)
108 1zug_A Phage 434 CRO protein; 97.1 0.00041 1.4E-08 37.1 2.8 25 3-27 14-38 (71)
109 1r69_A Repressor protein CI; g 97.1 0.00042 1.4E-08 36.8 2.8 25 3-27 12-36 (69)
110 2cyy_A Putative HTH-type trans 97.1 0.00057 2E-08 42.3 3.8 63 5-67 21-94 (151)
111 2rnj_A Response regulator prot 97.1 0.00055 1.9E-08 39.3 3.4 31 3-33 42-72 (91)
112 2ao9_A Phage protein; structur 97.1 0.00057 1.9E-08 43.9 3.8 24 5-28 48-71 (155)
113 2eth_A Transcriptional regulat 97.0 0.0019 6.5E-08 39.4 6.0 53 4-56 57-112 (154)
114 3fmy_A HTH-type transcriptiona 97.0 0.00035 1.2E-08 38.5 2.4 47 3-66 22-68 (73)
115 1tty_A Sigma-A, RNA polymerase 97.0 0.00095 3.3E-08 38.0 4.4 30 4-33 37-66 (87)
116 3cjn_A Transcriptional regulat 97.0 0.0014 4.8E-08 40.1 5.4 52 4-55 65-119 (162)
117 3cdh_A Transcriptional regulat 97.0 0.0019 6.5E-08 39.3 5.9 53 4-56 56-111 (155)
118 2pn6_A ST1022, 150AA long hypo 97.0 0.00077 2.6E-08 41.5 4.1 62 5-66 17-91 (150)
119 1neq_A DNA-binding protein NER 97.0 0.0002 7E-09 40.3 1.3 25 2-26 19-43 (74)
120 2b0l_A GTP-sensing transcripti 97.0 0.00072 2.5E-08 40.2 3.8 33 7-39 45-77 (102)
121 2fa5_A Transcriptional regulat 97.0 0.00096 3.3E-08 40.8 4.4 52 4-55 62-116 (162)
122 3kz3_A Repressor protein CI; f 97.0 0.00051 1.8E-08 38.1 2.9 56 3-74 23-78 (80)
123 3bja_A Transcriptional regulat 97.0 0.00094 3.2E-08 39.7 4.2 52 4-55 46-100 (139)
124 2nnn_A Probable transcriptiona 97.0 0.00094 3.2E-08 39.7 4.2 51 4-54 51-104 (140)
125 2ppx_A AGR_C_3184P, uncharacte 97.0 0.00077 2.6E-08 39.0 3.7 49 3-68 41-89 (99)
126 3ulq_B Transcriptional regulat 97.0 0.00064 2.2E-08 39.4 3.3 33 3-35 42-74 (90)
127 3e6m_A MARR family transcripti 97.0 0.0015 5.1E-08 40.3 5.2 52 4-55 66-120 (161)
128 3neu_A LIN1836 protein; struct 97.0 0.00065 2.2E-08 41.4 3.4 36 7-42 39-74 (125)
129 2a6c_A Helix-turn-helix motif; 97.0 0.00062 2.1E-08 38.2 3.1 25 3-27 29-53 (83)
130 1s3j_A YUSO protein; structura 97.0 0.0016 5.4E-08 39.5 5.2 51 4-54 50-103 (155)
131 1tbx_A ORF F-93, hypothetical 97.0 0.0008 2.7E-08 38.7 3.6 53 4-56 21-77 (99)
132 2pg4_A Uncharacterized protein 97.0 0.00077 2.6E-08 38.7 3.5 54 5-58 30-85 (95)
133 1xsv_A Hypothetical UPF0122 pr 97.0 0.0011 3.6E-08 39.9 4.3 30 3-32 39-68 (113)
134 1sfx_A Conserved hypothetical 97.0 0.00076 2.6E-08 38.5 3.4 37 4-40 33-69 (109)
135 3bpv_A Transcriptional regulat 97.0 0.00047 1.6E-08 41.0 2.6 41 4-44 42-82 (138)
136 3tqn_A Transcriptional regulat 97.0 0.00071 2.4E-08 40.5 3.4 36 7-42 35-70 (113)
137 2x4h_A Hypothetical protein SS 97.0 0.0017 5.8E-08 39.1 5.2 36 4-39 30-65 (139)
138 2pex_A Transcriptional regulat 96.9 0.00061 2.1E-08 41.5 3.2 42 4-45 60-101 (153)
139 3mzy_A RNA polymerase sigma-H 96.9 0.0011 3.7E-08 40.2 4.3 29 3-31 122-150 (164)
140 2qww_A Transcriptional regulat 96.9 0.00091 3.1E-08 40.6 3.9 53 4-56 54-111 (154)
141 3bd1_A CRO protein; transcript 96.9 0.00074 2.5E-08 37.4 3.2 25 3-28 10-34 (79)
142 2cfx_A HTH-type transcriptiona 96.9 0.00065 2.2E-08 41.8 3.2 32 5-36 19-50 (144)
143 2r1j_L Repressor protein C2; p 96.9 0.00067 2.3E-08 35.9 2.9 25 3-27 16-40 (68)
144 4b8x_A SCO5413, possible MARR- 96.9 0.0013 4.5E-08 40.4 4.6 50 5-54 51-103 (147)
145 1p4w_A RCSB; solution structur 96.9 0.00059 2E-08 40.4 2.8 33 3-35 47-79 (99)
146 3i4p_A Transcriptional regulat 96.9 0.0011 3.6E-08 41.8 4.2 34 3-36 14-48 (162)
147 3deu_A Transcriptional regulat 96.9 0.00071 2.4E-08 42.3 3.3 42 4-45 67-108 (166)
148 3gpv_A Transcriptional regulat 96.9 0.0061 2.1E-07 38.2 7.7 65 5-75 16-83 (148)
149 2nyx_A Probable transcriptiona 96.9 0.0021 7.3E-08 39.9 5.5 51 4-54 58-111 (168)
150 2zhg_A Redox-sensitive transcr 96.9 0.0023 7.9E-08 40.5 5.6 65 5-75 11-77 (154)
151 2w25_A Probable transcriptiona 96.9 0.00072 2.5E-08 41.8 3.2 32 5-36 21-52 (150)
152 3bs3_A Putative DNA-binding pr 96.9 0.00069 2.4E-08 36.7 2.8 25 3-27 21-45 (76)
153 1y7y_A C.AHDI; helix-turn-heli 96.9 0.0007 2.4E-08 36.4 2.8 25 3-27 24-48 (74)
154 2cg4_A Regulatory protein ASNC 96.9 0.00077 2.6E-08 41.7 3.3 62 5-66 22-95 (152)
155 2p5v_A Transcriptional regulat 96.9 0.00074 2.5E-08 42.3 3.2 32 5-36 24-55 (162)
156 2qvo_A Uncharacterized protein 96.9 0.00083 2.8E-08 38.7 3.2 30 6-35 31-60 (95)
157 3e7l_A Transcriptional regulat 96.9 0.00057 2E-08 37.1 2.3 28 3-30 30-57 (63)
158 3r0a_A Putative transcriptiona 96.9 0.00075 2.5E-08 40.9 3.1 33 6-38 43-75 (123)
159 2b5a_A C.BCLI; helix-turn-heli 96.9 0.00074 2.5E-08 36.7 2.8 25 3-27 21-45 (77)
160 3omt_A Uncharacterized protein 96.9 0.00078 2.7E-08 36.6 2.9 25 3-27 19-43 (73)
161 1on2_A Transcriptional regulat 96.9 0.0011 3.8E-08 40.2 3.9 36 4-39 21-56 (142)
162 2e1c_A Putative HTH-type trans 96.9 0.00099 3.4E-08 42.6 3.6 62 5-66 41-113 (171)
163 2r0q_C Putative transposon TN5 96.8 0.00045 1.6E-08 45.0 2.0 28 2-29 172-199 (209)
164 2y75_A HTH-type transcriptiona 96.8 0.0013 4.5E-08 39.7 3.9 35 5-39 26-60 (129)
165 3kp7_A Transcriptional regulat 96.8 0.0019 6.6E-08 39.2 4.7 35 3-37 49-83 (151)
166 2fsw_A PG_0823 protein; alpha- 96.8 0.00059 2E-08 40.2 2.2 50 2-51 35-88 (107)
167 2a61_A Transcriptional regulat 96.8 0.0016 5.3E-08 39.0 4.2 53 4-56 46-101 (145)
168 2wiu_B HTH-type transcriptiona 96.8 0.0011 3.9E-08 36.9 3.3 25 3-27 23-47 (88)
169 2kpj_A SOS-response transcript 96.8 0.00097 3.3E-08 38.1 3.1 25 3-27 20-44 (94)
170 1adr_A P22 C2 repressor; trans 96.8 0.00099 3.4E-08 36.0 2.9 25 3-27 16-40 (76)
171 3b7h_A Prophage LP1 protein 11 96.8 0.0012 4E-08 35.9 3.1 25 3-27 18-42 (78)
172 3kor_A Possible Trp repressor; 96.8 0.00079 2.7E-08 41.7 2.6 31 2-33 72-102 (119)
173 2fbi_A Probable transcriptiona 96.8 0.0012 4E-08 39.3 3.4 53 4-56 49-104 (142)
174 4dyq_A Gene 1 protein; GP1, oc 96.8 0.00048 1.6E-08 42.9 1.7 28 3-30 26-54 (140)
175 3qq6_A HTH-type transcriptiona 96.8 0.00097 3.3E-08 37.1 2.8 25 3-27 21-45 (78)
176 3by6_A Predicted transcription 96.8 0.0012 4.1E-08 40.3 3.4 36 7-42 37-72 (126)
177 2h09_A Transcriptional regulat 96.8 0.0014 4.9E-08 40.3 3.8 36 4-39 53-88 (155)
178 4fx0_A Probable transcriptiona 96.8 0.006 2E-07 37.6 6.6 50 5-55 52-104 (148)
179 2bv6_A MGRA, HTH-type transcri 96.7 0.00066 2.3E-08 40.7 2.0 51 4-54 50-103 (142)
180 3eus_A DNA-binding protein; st 96.7 0.0012 3.9E-08 37.4 2.9 24 3-26 25-48 (86)
181 2ovg_A Phage lambda CRO; trans 96.7 0.0014 4.7E-08 36.3 3.1 21 7-27 15-35 (66)
182 2ef8_A C.ECOT38IS, putative tr 96.7 0.0011 3.8E-08 36.5 2.8 25 3-27 21-45 (84)
183 3boq_A Transcriptional regulat 96.7 0.0013 4.5E-08 40.1 3.2 52 4-55 61-115 (160)
184 1ylf_A RRF2 family protein; st 96.7 0.0025 8.7E-08 39.7 4.6 37 6-42 31-68 (149)
185 2k9q_A Uncharacterized protein 96.7 0.0013 4.4E-08 36.1 2.9 25 3-27 13-37 (77)
186 4ham_A LMO2241 protein; struct 96.7 0.0015 5.1E-08 40.0 3.4 36 7-42 40-75 (134)
187 1qpz_A PURA, protein (purine n 96.7 0.0049 1.7E-07 41.7 6.2 22 6-27 1-22 (340)
188 3iuo_A ATP-dependent DNA helic 96.7 0.0048 1.6E-07 37.7 5.6 72 1-75 28-100 (122)
189 1ntc_A Protein (nitrogen regul 96.7 0.00081 2.8E-08 39.0 2.0 27 4-30 63-89 (91)
190 1v4r_A Transcriptional repress 96.7 0.00034 1.2E-08 40.9 0.3 36 7-42 37-72 (102)
191 2ict_A Antitoxin HIGA; helix-t 96.7 0.0018 6.1E-08 36.8 3.4 25 3-27 19-43 (94)
192 3hrs_A Metalloregulator SCAR; 96.7 0.003 1E-07 41.5 4.9 52 4-58 19-70 (214)
193 2ia0_A Putative HTH-type trans 96.6 0.0014 4.8E-08 41.8 3.2 32 5-36 31-62 (171)
194 1i1g_A Transcriptional regulat 96.6 0.0034 1.1E-07 38.0 4.8 32 5-36 18-49 (141)
195 2dbb_A Putative HTH-type trans 96.6 0.0026 9E-08 39.1 4.4 62 5-66 23-95 (151)
196 2ek5_A Predicted transcription 96.6 0.0015 5.1E-08 40.1 3.2 36 7-42 30-65 (129)
197 3f6w_A XRE-family like protein 96.6 0.0017 5.7E-08 35.9 3.1 25 3-27 25-49 (83)
198 2dk5_A DNA-directed RNA polyme 96.6 0.0025 8.4E-08 37.3 3.9 36 4-39 35-70 (91)
199 2eby_A Putative HTH-type trans 96.6 0.0018 6E-08 38.0 3.3 26 2-27 21-46 (113)
200 1yyv_A Putative transcriptiona 96.6 0.0013 4.3E-08 40.5 2.7 50 2-51 45-98 (131)
201 3f3x_A Transcriptional regulat 96.6 0.0019 6.7E-08 38.8 3.5 50 7-56 52-104 (144)
202 3s8q_A R-M controller protein; 96.6 0.0018 6.1E-08 35.8 3.0 25 3-27 22-46 (82)
203 2wte_A CSA3; antiviral protein 96.6 0.0032 1.1E-07 42.6 4.7 35 4-38 165-199 (244)
204 1or7_A Sigma-24, RNA polymeras 96.6 0.0029 9.9E-08 39.6 4.2 29 3-31 154-182 (194)
205 3t76_A VANU, transcriptional r 96.6 0.0016 5.5E-08 37.7 2.8 25 3-27 35-59 (88)
206 3frw_A Putative Trp repressor 96.6 0.0018 6.1E-08 39.4 3.1 30 2-31 55-84 (107)
207 2ewt_A BLDD, putative DNA-bind 96.6 0.0023 7.9E-08 34.2 3.3 25 3-27 19-45 (71)
208 2p8t_A Hypothetical protein PH 96.5 0.0048 1.7E-07 41.0 5.3 59 4-66 29-87 (200)
209 1z6r_A MLC protein; transcript 96.5 0.002 6.7E-08 45.4 3.5 34 4-37 29-62 (406)
210 1lmb_3 Protein (lambda repress 96.5 0.0019 6.6E-08 36.3 2.9 54 3-72 28-81 (92)
211 2lfw_A PHYR sigma-like domain; 96.5 0.0031 1.1E-07 39.0 4.0 30 3-32 107-136 (157)
212 2fbk_A Transcriptional regulat 96.5 0.002 6.7E-08 40.6 3.1 51 5-55 86-139 (181)
213 1x57_A Endothelial differentia 96.5 0.0029 1E-07 35.7 3.6 25 3-27 24-48 (91)
214 2fxa_A Protease production reg 96.5 0.0049 1.7E-07 40.0 5.1 60 4-63 61-123 (207)
215 3trb_A Virulence-associated pr 96.5 0.0022 7.6E-08 38.0 3.1 25 3-27 25-49 (104)
216 1b0n_A Protein (SINR protein); 96.5 0.0019 6.6E-08 37.4 2.8 25 3-27 12-36 (111)
217 2p5t_A Putative transcriptiona 96.5 0.00046 1.6E-08 43.2 0.0 30 3-37 12-41 (158)
218 3u2r_A Regulatory protein MARR 96.5 0.0015 5E-08 40.6 2.3 54 4-57 61-117 (168)
219 1umq_A Photosynthetic apparatu 96.5 0.0011 3.7E-08 38.3 1.6 27 3-29 52-78 (81)
220 3k69_A Putative transcription 96.4 0.002 6.8E-08 41.0 2.9 34 6-39 29-62 (162)
221 2f2e_A PA1607; transcription f 96.4 0.0028 9.7E-08 39.4 3.5 49 3-51 35-85 (146)
222 2l49_A C protein; P2 bacteriop 96.4 0.0024 8.3E-08 36.4 3.0 25 3-27 15-39 (99)
223 2hsg_A Glucose-resistance amyl 96.4 0.0055 1.9E-07 41.2 5.2 23 6-28 3-25 (332)
224 3cec_A Putative antidote prote 96.4 0.0024 8.1E-08 37.0 2.9 25 3-27 29-53 (104)
225 2p5k_A Arginine repressor; DNA 96.4 0.0046 1.6E-07 32.7 3.8 29 4-35 18-51 (64)
226 3t8r_A Staphylococcus aureus C 96.4 0.002 7E-08 40.1 2.7 34 6-39 29-62 (143)
227 3k2z_A LEXA repressor; winged 96.4 0.002 6.9E-08 41.6 2.8 33 6-38 25-57 (196)
228 1sfu_A 34L protein; protein/Z- 96.4 0.0046 1.6E-07 35.4 3.9 33 6-38 30-62 (75)
229 1p6r_A Penicillinase repressor 96.4 0.0024 8.2E-08 35.7 2.6 38 4-41 22-63 (82)
230 4ghj_A Probable transcriptiona 96.4 0.0027 9.1E-08 37.7 3.0 23 3-25 47-69 (101)
231 3cta_A Riboflavin kinase; stru 96.4 0.0031 1.1E-07 41.5 3.6 52 4-55 26-77 (230)
232 1xd7_A YWNA; structural genomi 96.4 0.0058 2E-07 37.8 4.7 37 7-43 25-62 (145)
233 1jhf_A LEXA repressor; LEXA SO 96.3 0.0032 1.1E-07 40.5 3.5 34 3-36 21-57 (202)
234 2hoe_A N-acetylglucosamine kin 96.3 0.0036 1.2E-07 43.9 4.0 34 4-37 32-65 (380)
235 1p4x_A Staphylococcal accessor 96.3 0.01 3.5E-07 40.0 6.0 55 5-59 174-231 (250)
236 3kjx_A Transcriptional regulat 96.3 0.0094 3.2E-07 40.3 5.8 22 6-27 11-32 (344)
237 3lwf_A LIN1550 protein, putati 96.3 0.0048 1.6E-07 39.3 4.1 34 6-39 45-78 (159)
238 1r8e_A Multidrug-efflux transp 96.3 0.0055 1.9E-07 40.9 4.5 67 3-75 3-73 (278)
239 3qao_A LMO0526 protein, MERR-l 96.3 0.018 6.3E-07 38.9 7.2 66 4-75 2-70 (249)
240 1rp3_A RNA polymerase sigma fa 96.3 0.0052 1.8E-07 39.3 4.3 29 3-31 201-229 (239)
241 3op9_A PLI0006 protein; struct 96.3 0.004 1.4E-07 36.5 3.4 25 3-27 20-44 (114)
242 1uly_A Hypothetical protein PH 96.2 0.0038 1.3E-07 40.7 3.5 36 3-38 31-66 (192)
243 3kxa_A NGO0477 protein, putati 96.2 0.0038 1.3E-07 38.7 3.3 25 3-27 79-103 (141)
244 3b73_A PHIH1 repressor-like pr 96.2 0.0031 1.1E-07 38.2 2.7 50 5-57 27-78 (111)
245 1eto_A FIS, factor for inversi 96.2 0.0028 9.4E-08 37.6 2.3 27 3-29 69-95 (98)
246 3mlf_A Transcriptional regulat 96.1 0.0048 1.6E-07 36.6 3.3 25 3-27 34-58 (111)
247 1z05_A Transcriptional regulat 96.1 0.0024 8.1E-08 45.5 2.3 35 4-38 52-86 (429)
248 1g2h_A Transcriptional regulat 96.1 0.003 1E-07 34.1 2.2 23 7-29 35-57 (61)
249 2jvl_A TRMBF1; coactivator, he 96.1 0.0052 1.8E-07 36.1 3.4 25 3-27 47-71 (107)
250 3sxy_A Transcriptional regulat 96.1 0.0099 3.4E-07 38.6 5.0 45 6-50 36-80 (218)
251 3c7j_A Transcriptional regulat 96.1 0.007 2.4E-07 40.2 4.3 38 6-43 50-87 (237)
252 1mkm_A ICLR transcriptional re 96.1 0.014 4.9E-07 38.7 5.8 34 5-38 23-56 (249)
253 3vk0_A NHTF, transcriptional r 96.1 0.0045 1.5E-07 36.6 3.0 24 3-26 32-55 (114)
254 1fx7_A Iron-dependent represso 96.1 0.0049 1.7E-07 40.7 3.4 52 4-58 21-74 (230)
255 3ivp_A Putative transposon-rel 96.1 0.0056 1.9E-07 36.5 3.3 25 3-27 23-47 (126)
256 2di3_A Bacterial regulatory pr 96.0 0.025 8.5E-07 37.1 6.6 37 7-43 30-70 (239)
257 2o38_A Hypothetical protein; a 96.0 0.005 1.7E-07 37.3 3.0 25 3-27 51-75 (120)
258 2o0y_A Transcriptional regulat 96.0 0.0078 2.7E-07 40.4 4.2 36 4-39 37-72 (260)
259 1hsj_A Fusion protein consisti 96.0 0.0077 2.6E-07 42.8 4.3 56 4-59 419-477 (487)
260 3ihu_A Transcriptional regulat 96.0 0.014 5E-07 37.9 5.2 47 6-52 40-86 (222)
261 1j5y_A Transcriptional regulat 95.9 0.0084 2.9E-07 38.4 4.0 32 6-37 37-69 (187)
262 3bdn_A Lambda repressor; repre 95.9 0.0038 1.3E-07 40.7 2.3 27 2-28 27-53 (236)
263 2q0o_A Probable transcriptiona 95.9 0.0063 2.1E-07 40.0 3.3 33 3-35 188-220 (236)
264 3iwf_A Transcription regulator 95.9 0.009 3.1E-07 35.7 3.6 26 5-30 35-60 (107)
265 4g6q_A Putative uncharacterize 95.9 0.004 1.4E-07 40.1 2.2 39 1-39 32-71 (182)
266 1okr_A MECI, methicillin resis 95.8 0.0064 2.2E-07 35.8 2.9 37 4-40 23-63 (123)
267 2g7u_A Transcriptional regulat 95.8 0.0096 3.3E-07 39.8 4.1 35 4-38 28-62 (257)
268 3f52_A CLP gene regulator (CLG 95.8 0.007 2.4E-07 35.6 3.0 25 3-27 39-63 (117)
269 3g5g_A Regulatory protein; tra 95.8 0.0069 2.4E-07 35.2 3.0 25 3-27 39-63 (99)
270 2wv0_A YVOA, HTH-type transcri 95.8 0.01 3.4E-07 39.6 4.1 36 7-42 36-71 (243)
271 2o3f_A Putative HTH-type trans 95.8 0.0077 2.7E-07 36.1 3.2 25 5-29 39-63 (111)
272 2xrn_A HTH-type transcriptiona 95.8 0.0065 2.2E-07 40.4 3.0 35 5-39 21-55 (241)
273 2hs5_A Putative transcriptiona 95.8 0.016 5.4E-07 38.4 4.9 45 6-50 52-96 (239)
274 2qq9_A Diphtheria toxin repres 95.8 0.0074 2.5E-07 39.8 3.2 36 4-39 21-58 (226)
275 2o0m_A Transcriptional regulat 95.7 0.0017 5.7E-08 45.4 0.0 39 3-41 32-70 (345)
276 2o20_A Catabolite control prot 95.7 0.0017 5.8E-08 43.8 0.0 28 2-29 2-29 (332)
277 3h5t_A Transcriptional regulat 95.7 0.0056 1.9E-07 41.8 2.5 22 6-27 10-31 (366)
278 2p4w_A Transcriptional regulat 95.7 0.0058 2E-07 40.2 2.5 38 3-40 26-63 (202)
279 1u78_A TC3 transposase, transp 95.7 0.011 3.7E-07 35.3 3.6 26 4-29 76-103 (141)
280 3t72_q RNA polymerase sigma fa 95.7 0.016 5.5E-07 34.2 4.2 28 4-31 38-65 (99)
281 1rr7_A Middle operon regulator 95.6 0.015 5.2E-07 35.9 4.1 29 4-32 91-119 (129)
282 3ryp_A Catabolite gene activat 95.6 0.012 4.2E-07 36.8 3.8 33 6-38 168-200 (210)
283 2oz6_A Virulence factor regula 95.6 0.012 4.2E-07 36.6 3.8 33 6-38 165-197 (207)
284 3szt_A QCSR, quorum-sensing co 95.6 0.0091 3.1E-07 39.5 3.3 33 3-35 188-220 (237)
285 4a5n_A Uncharacterized HTH-typ 95.6 0.0088 3E-07 37.0 3.0 44 2-45 36-80 (131)
286 3fx3_A Cyclic nucleotide-bindi 95.6 0.012 4.1E-07 37.6 3.7 54 6-66 179-232 (237)
287 2q1z_A RPOE, ECF SIGE; ECF sig 95.6 0.002 6.9E-08 40.0 -0.1 29 3-31 149-177 (184)
288 1l3l_A Transcriptional activat 95.6 0.011 3.9E-07 38.7 3.6 33 3-35 186-218 (234)
289 3ic7_A Putative transcriptiona 95.5 0.001 3.5E-08 40.6 -1.5 36 7-42 37-72 (126)
290 3u1d_A Uncharacterized protein 95.5 0.036 1.2E-06 35.3 5.7 51 6-56 46-105 (151)
291 3edp_A LIN2111 protein; APC883 95.5 0.011 3.7E-07 39.3 3.4 36 7-42 35-70 (236)
292 3dv8_A Transcriptional regulat 95.5 0.016 5.4E-07 36.5 4.0 33 5-37 169-201 (220)
293 1p4x_A Staphylococcal accessor 95.5 0.019 6.5E-07 38.7 4.6 54 4-57 49-105 (250)
294 4ev0_A Transcription regulator 95.5 0.016 5.4E-07 36.4 4.0 32 6-37 164-195 (216)
295 2wus_R RODZ, putative uncharac 95.5 0.011 3.9E-07 35.3 3.1 30 3-37 18-47 (112)
296 2ia2_A Putative transcriptiona 95.5 0.011 3.9E-07 39.7 3.4 35 4-38 35-69 (265)
297 2fe3_A Peroxide operon regulat 95.5 0.025 8.4E-07 35.0 4.8 39 4-42 36-79 (145)
298 3dkw_A DNR protein; CRP-FNR, H 95.5 0.014 4.9E-07 36.9 3.7 34 5-38 178-211 (227)
299 3r4k_A Transcriptional regulat 95.5 0.011 3.7E-07 39.8 3.3 36 4-39 20-55 (260)
300 2zcw_A TTHA1359, transcription 95.5 0.015 5.2E-07 36.4 3.8 53 6-64 147-199 (202)
301 3iwz_A CAP-like, catabolite ac 95.5 0.015 5.1E-07 36.8 3.8 33 6-38 188-220 (230)
302 3lfp_A CSP231I C protein; tran 95.5 0.015 5E-07 33.3 3.4 24 3-26 12-39 (98)
303 3eet_A Putative GNTR-family tr 95.5 0.014 4.9E-07 39.6 3.8 36 7-42 55-90 (272)
304 1r71_A Transcriptional repress 95.4 0.0069 2.4E-07 39.4 2.1 27 3-29 50-76 (178)
305 3clo_A Transcriptional regulat 95.4 0.019 6.4E-07 38.2 4.3 31 3-33 210-240 (258)
306 3b02_A Transcriptional regulat 95.4 0.016 5.4E-07 36.2 3.7 54 6-65 140-193 (195)
307 3jvd_A Transcriptional regulat 95.4 0.0027 9.1E-08 43.1 0.0 23 6-28 7-29 (333)
308 3df8_A Possible HXLR family tr 95.4 0.022 7.5E-07 33.7 4.1 46 5-51 40-88 (111)
309 1xmk_A Double-stranded RNA-spe 95.4 0.015 5.2E-07 33.3 3.2 35 4-38 24-59 (79)
310 1hw1_A FADR, fatty acid metabo 95.4 0.012 4E-07 38.5 3.1 36 7-42 33-68 (239)
311 3d0s_A Transcriptional regulat 95.4 0.017 5.9E-07 36.6 3.8 32 6-37 178-209 (227)
312 1zyb_A Transcription regulator 95.3 0.02 6.8E-07 36.7 4.1 33 6-38 187-219 (232)
313 3e97_A Transcriptional regulat 95.3 0.018 6.1E-07 36.7 3.8 33 6-38 176-208 (231)
314 1y9q_A Transcriptional regulat 95.3 0.011 3.9E-07 37.4 2.8 25 3-27 22-46 (192)
315 3hhg_A Transcriptional regulat 95.3 0.013 4.4E-07 38.2 3.1 46 3-51 16-62 (306)
316 2fmy_A COOA, carbon monoxide o 95.3 0.018 6.1E-07 36.5 3.7 33 5-37 167-199 (220)
317 2k27_A Paired box protein PAX- 95.3 0.024 8.2E-07 35.0 4.2 37 4-40 100-146 (159)
318 3bwg_A Uncharacterized HTH-typ 95.3 0.015 5.2E-07 38.6 3.4 34 7-40 31-64 (239)
319 1ic8_A Hepatocyte nuclear fact 95.2 0.011 3.6E-07 39.1 2.6 26 2-27 40-65 (194)
320 2o03_A Probable zinc uptake re 95.2 0.017 5.9E-07 35.1 3.3 38 4-41 25-67 (131)
321 1ft9_A Carbon monoxide oxidati 95.2 0.027 9.3E-07 35.7 4.4 33 6-38 164-196 (222)
322 2k4b_A Transcriptional regulat 95.2 0.013 4.4E-07 34.6 2.6 38 4-41 48-89 (99)
323 2cob_A LCOR protein; MLR2, KIA 95.2 0.032 1.1E-06 31.5 4.1 28 3-30 27-55 (70)
324 2og0_A Excisionase; protein-DN 95.2 0.0098 3.4E-07 31.6 1.8 32 7-42 4-39 (52)
325 1l0o_C Sigma factor; bergerat 95.1 0.0036 1.2E-07 40.0 0.0 29 3-31 212-240 (243)
326 3fym_A Putative uncharacterize 95.1 0.016 5.5E-07 35.2 3.0 31 3-38 14-44 (130)
327 2l1p_A DNA-binding protein SAT 95.1 0.016 5.5E-07 33.7 2.7 23 5-27 32-54 (83)
328 2g9w_A Conserved hypothetical 95.1 0.02 6.9E-07 34.8 3.3 38 4-41 23-64 (138)
329 2bnm_A Epoxidase; oxidoreducta 95.1 0.016 5.5E-07 36.7 3.0 25 3-27 21-45 (198)
330 2gau_A Transcriptional regulat 95.1 0.024 8.1E-07 36.1 3.8 34 5-38 180-213 (232)
331 3e6c_C CPRK, cyclic nucleotide 95.1 0.024 8.1E-07 36.7 3.8 57 5-67 177-233 (250)
332 3la7_A Global nitrogen regulat 95.0 0.024 8.2E-07 36.7 3.8 34 5-38 193-226 (243)
333 1zs4_A Regulatory protein CII; 95.0 0.013 4.4E-07 34.0 2.2 23 6-28 25-47 (83)
334 3qp6_A CVIR transcriptional re 95.0 0.019 6.4E-07 38.7 3.3 33 3-35 210-242 (265)
335 3h5o_A Transcriptional regulat 95.0 0.0042 1.4E-07 42.0 0.0 23 6-28 5-27 (339)
336 1ixc_A CBNR, LYSR-type regulat 95.0 0.026 8.9E-07 36.5 3.8 46 3-51 14-60 (294)
337 3kcc_A Catabolite gene activat 95.0 0.025 8.6E-07 37.1 3.8 33 6-38 218-250 (260)
338 1mzb_A Ferric uptake regulatio 95.0 0.041 1.4E-06 33.6 4.5 37 4-40 33-74 (136)
339 2auw_A Hypothetical protein NE 95.0 0.018 6.2E-07 37.3 3.0 25 3-27 101-125 (170)
340 3dbi_A Sugar-binding transcrip 94.9 0.0046 1.6E-07 41.7 0.0 23 6-28 4-26 (338)
341 2vn2_A DNAD, chromosome replic 94.9 0.037 1.3E-06 33.6 4.1 35 5-39 51-85 (128)
342 3f8m_A GNTR-family protein tra 94.8 0.022 7.6E-07 38.1 3.3 33 7-40 38-70 (248)
343 3bil_A Probable LACI-family tr 94.8 0.0049 1.7E-07 42.1 0.0 23 6-28 9-31 (348)
344 3e3m_A Transcriptional regulat 94.8 0.0049 1.7E-07 42.0 0.0 23 6-28 13-35 (355)
345 2bgc_A PRFA; bacterial infecti 94.8 0.025 8.5E-07 36.4 3.4 34 5-38 169-203 (238)
346 3ctp_A Periplasmic binding pro 94.8 0.005 1.7E-07 41.5 0.0 23 6-28 3-25 (330)
347 1jye_A Lactose operon represso 94.8 0.0051 1.7E-07 41.9 0.0 24 6-29 4-27 (349)
348 3szp_A Transcriptional regulat 94.8 0.032 1.1E-06 35.7 3.8 43 7-51 17-60 (291)
349 1bia_A BIRA bifunctional prote 94.8 0.027 9.3E-07 39.0 3.7 32 6-37 20-51 (321)
350 2esn_A Probable transcriptiona 94.7 0.032 1.1E-06 36.5 3.8 46 3-51 23-69 (310)
351 3fxq_A LYSR type regulator of 94.7 0.033 1.1E-06 36.5 3.9 46 3-51 15-61 (305)
352 2obp_A Putative DNA-binding pr 94.7 0.086 3E-06 31.1 5.2 54 5-58 36-90 (96)
353 1al3_A Cys regulon transcripti 94.6 0.006 2.1E-07 40.7 0.0 31 2-32 13-43 (324)
354 3isp_A HTH-type transcriptiona 94.6 0.03 1E-06 36.6 3.3 31 7-37 22-53 (303)
355 2h8r_A Hepatocyte nuclear fact 94.6 0.013 4.4E-07 39.6 1.6 25 3-27 42-66 (221)
356 2ijl_A AGR_C_4647P, molybdenum 94.5 0.043 1.5E-06 34.1 3.9 48 7-54 40-91 (135)
357 2fjr_A Repressor protein CI; g 94.5 0.028 9.5E-07 35.4 3.1 21 7-27 22-42 (189)
358 1sd4_A Penicillinase repressor 94.5 0.025 8.4E-07 33.3 2.6 38 4-41 23-64 (126)
359 3mq0_A Transcriptional repress 94.3 0.021 7.4E-07 38.7 2.3 36 4-39 44-79 (275)
360 1pm6_A Excisionase; antiparall 94.3 0.035 1.2E-06 31.3 2.7 32 7-42 4-39 (72)
361 3fzv_A Probable transcriptiona 94.2 0.096 3.3E-06 33.9 5.2 47 3-51 17-64 (306)
362 2xig_A Ferric uptake regulatio 94.2 0.061 2.1E-06 33.4 4.0 37 4-40 41-82 (150)
363 2ofy_A Putative XRE-family tra 94.1 0.04 1.4E-06 30.4 2.8 21 7-27 29-49 (86)
364 2v79_A DNA replication protein 94.1 0.059 2E-06 33.3 3.8 58 4-62 50-112 (135)
365 1xwr_A Regulatory protein CII; 94.1 0.018 6.1E-07 34.2 1.3 25 5-29 23-47 (97)
366 1nr3_A MTH0916, DNA-binding pr 94.0 0.0017 5.8E-08 39.2 -3.4 28 2-29 2-29 (122)
367 4ich_A Transcriptional regulat 94.0 0.0098 3.3E-07 40.0 0.0 26 3-28 41-66 (311)
368 3mz1_A Putative transcriptiona 93.9 0.01 3.6E-07 38.1 0.0 29 3-32 11-39 (300)
369 1vz0_A PARB, chromosome partit 93.8 0.054 1.8E-06 36.1 3.4 26 3-28 132-157 (230)
370 3mwm_A ZUR, putative metal upt 93.8 0.077 2.6E-06 32.6 3.9 37 4-40 28-69 (139)
371 2h9b_A HTH-type transcriptiona 93.7 0.011 3.9E-07 39.1 0.0 30 2-32 13-42 (312)
372 2kfs_A Conserved hypothetical 93.7 0.038 1.3E-06 35.2 2.4 33 6-42 32-64 (148)
373 3mkl_A HTH-type transcriptiona 93.7 0.2 6.8E-06 29.4 5.5 60 4-75 22-81 (120)
374 2ra5_A Putative transcriptiona 93.5 0.01 3.5E-07 39.6 -0.6 35 7-41 42-76 (247)
375 2v7f_A RPS19, RPS19E SSU ribos 93.5 0.09 3.1E-06 33.2 3.9 35 8-42 70-118 (150)
376 1a04_A Nitrate/nitrite respons 93.5 0.067 2.3E-06 33.6 3.3 33 3-35 167-199 (215)
377 2d6y_A Putative TETR family re 93.4 0.073 2.5E-06 33.1 3.4 24 4-27 27-50 (202)
378 2zcm_A Biofilm operon icaabcd 93.4 0.069 2.3E-06 32.6 3.1 23 4-26 26-48 (192)
379 3vpr_A Transcriptional regulat 93.4 0.076 2.6E-06 32.4 3.3 24 4-27 22-45 (190)
380 2h98_A HTH-type transcriptiona 93.3 0.015 5E-07 38.9 0.0 30 2-32 13-42 (313)
381 1pdn_C Protein (PRD paired); p 93.2 0.057 1.9E-06 31.2 2.5 25 5-29 93-127 (128)
382 1k78_A Paired box protein PAX5 93.2 0.047 1.6E-06 33.1 2.2 27 5-31 108-144 (149)
383 2qlz_A Transcription factor PF 93.2 0.013 4.3E-07 39.5 -0.5 35 3-37 23-57 (232)
384 2fq4_A Transcriptional regulat 93.2 0.078 2.7E-06 32.6 3.2 24 4-27 31-54 (192)
385 3c3w_A Two component transcrip 93.1 0.079 2.7E-06 33.8 3.3 33 3-35 162-194 (225)
386 3rkx_A Biotin-[acetyl-COA-carb 93.0 0.094 3.2E-06 36.5 3.7 39 6-44 20-59 (323)
387 3egq_A TETR family transcripti 93.0 0.075 2.6E-06 31.8 2.9 22 5-26 24-45 (170)
388 1r7j_A Conserved hypothetical 93.0 0.14 5E-06 29.6 4.0 49 4-56 19-67 (95)
389 2w57_A Ferric uptake regulatio 93.0 0.072 2.5E-06 33.1 2.8 37 4-40 32-73 (150)
390 3lwj_A Putative TETR-family tr 92.9 0.089 3E-06 32.1 3.2 23 4-26 31-53 (202)
391 3ppb_A Putative TETR family tr 92.9 0.089 3E-06 31.7 3.1 23 4-26 28-50 (195)
392 1uth_A LYSR-type regulatory pr 92.9 0.019 6.5E-07 38.1 0.0 29 3-32 27-55 (315)
393 1o5l_A Transcriptional regulat 92.8 0.019 6.6E-07 36.4 0.0 34 5-38 164-197 (213)
394 2v57_A TETR family transcripti 92.8 0.094 3.2E-06 31.8 3.2 23 4-26 31-53 (190)
395 3dew_A Transcriptional regulat 92.8 0.081 2.8E-06 32.1 2.9 24 4-27 27-50 (206)
396 3on4_A Transcriptional regulat 92.8 0.082 2.8E-06 31.8 2.9 23 4-26 29-51 (191)
397 3lhq_A Acrab operon repressor 92.8 0.095 3.2E-06 32.1 3.2 23 4-26 33-55 (220)
398 3dpj_A Transcription regulator 92.8 0.097 3.3E-06 31.8 3.2 23 4-26 27-49 (194)
399 3gzi_A Transcriptional regulat 92.8 0.095 3.2E-06 32.4 3.2 22 5-26 37-58 (218)
400 3qkx_A Uncharacterized HTH-typ 92.7 0.1 3.4E-06 31.3 3.2 23 4-26 27-49 (188)
401 3kz9_A SMCR; transcriptional r 92.7 0.1 3.5E-06 31.7 3.2 23 4-26 36-58 (206)
402 3loc_A HTH-type transcriptiona 92.7 0.06 2.1E-06 33.0 2.1 22 5-26 38-59 (212)
403 1stz_A Heat-inducible transcri 92.7 0.26 8.9E-06 34.6 5.6 37 6-43 37-75 (338)
404 1yio_A Response regulatory pro 92.6 0.12 4.1E-06 32.1 3.6 31 3-33 155-185 (208)
405 2eh3_A Transcriptional regulat 92.6 0.11 3.6E-06 31.5 3.2 23 4-26 21-43 (179)
406 2co5_A Viral protein F93; vira 92.5 0.43 1.5E-05 27.9 5.7 52 9-61 32-86 (99)
407 4aci_A HTH-type transcriptiona 92.5 0.071 2.4E-06 32.3 2.3 23 5-27 34-56 (191)
408 2g7s_A Transcriptional regulat 92.5 0.096 3.3E-06 31.5 2.9 23 4-26 27-49 (194)
409 2yve_A Transcriptional regulat 92.5 0.11 3.7E-06 31.8 3.2 23 4-26 23-45 (185)
410 2vxz_A Pyrsv_GP04; viral prote 92.5 0.11 3.6E-06 33.5 3.1 41 4-44 22-63 (165)
411 3rqi_A Response regulator prot 92.5 0.04 1.4E-06 34.1 1.1 28 3-30 154-181 (184)
412 2qtq_A Transcriptional regulat 92.5 0.12 4.2E-06 31.5 3.4 23 4-26 35-57 (213)
413 3f1b_A TETR-like transcription 92.4 0.11 3.8E-06 31.5 3.1 22 4-25 33-54 (203)
414 2dg7_A Putative transcriptiona 92.4 0.096 3.3E-06 32.0 2.9 23 5-27 27-49 (195)
415 1pb6_A Hypothetical transcript 92.4 0.11 3.8E-06 31.8 3.1 23 4-26 37-59 (212)
416 1lva_A Selenocysteine-specific 92.4 0.17 5.8E-06 34.0 4.3 68 7-75 159-226 (258)
417 3cwr_A Transcriptional regulat 92.4 0.1 3.4E-06 31.8 2.9 23 4-26 36-58 (208)
418 3vib_A MTRR; helix-turn-helix 92.4 0.11 3.9E-06 32.1 3.2 23 4-26 29-51 (210)
419 3knw_A Putative transcriptiona 92.3 0.12 4E-06 31.7 3.2 23 4-26 33-55 (212)
420 3c2b_A Transcriptional regulat 92.3 0.11 3.8E-06 32.2 3.1 24 4-27 34-57 (221)
421 3bqz_B HTH-type transcriptiona 92.3 0.12 4.1E-06 31.2 3.1 22 4-25 21-42 (194)
422 1yg2_A Gene activator APHA; vi 92.3 0.26 8.9E-06 31.1 4.8 61 3-63 13-86 (179)
423 2wui_A MEXZ, transcriptional r 92.3 0.12 4.1E-06 32.2 3.2 24 4-27 30-53 (210)
424 3ljl_A Transcriptional regulat 92.2 0.075 2.6E-06 31.9 2.1 22 5-26 34-55 (156)
425 3dcf_A Transcriptional regulat 92.2 0.12 4.2E-06 31.7 3.2 22 5-26 51-72 (218)
426 2jj7_A Hemolysin II regulatory 92.1 0.084 2.9E-06 31.9 2.3 23 5-27 27-49 (186)
427 2oer_A Probable transcriptiona 92.1 0.13 4.3E-06 32.2 3.2 23 4-26 43-65 (214)
428 3b81_A Transcriptional regulat 92.1 0.078 2.7E-06 32.3 2.1 22 4-25 30-51 (203)
429 3bqy_A Putative TETR family tr 92.1 0.11 3.8E-06 33.1 2.9 23 4-26 21-43 (209)
430 3f0c_A TETR-molecule A, transc 92.0 0.14 4.7E-06 31.6 3.2 23 4-26 30-52 (216)
431 2i10_A Putative TETR transcrip 92.0 0.14 4.9E-06 31.7 3.3 24 4-27 30-53 (202)
432 3rh2_A Hypothetical TETR-like 92.0 0.12 4E-06 32.0 2.9 23 4-26 22-44 (212)
433 2hku_A A putative transcriptio 92.0 0.14 4.9E-06 31.8 3.3 24 4-27 38-61 (215)
434 3bhq_A Transcriptional regulat 92.0 0.15 5E-06 31.7 3.3 23 4-26 31-53 (211)
435 2o7t_A Transcriptional regulat 91.9 0.12 4.2E-06 31.7 2.9 22 5-26 28-49 (199)
436 3klo_A Transcriptional regulat 91.9 0.12 4.1E-06 32.8 2.9 31 3-33 172-202 (225)
437 2opt_A Actii protein; helical 91.9 0.13 4.3E-06 33.7 3.1 24 4-27 25-48 (234)
438 2ibd_A Possible transcriptiona 91.9 0.14 4.8E-06 31.6 3.1 23 4-26 33-55 (204)
439 3bjb_A Probable transcriptiona 91.8 0.12 4.3E-06 32.2 2.9 23 5-27 42-64 (207)
440 3bru_A Regulatory protein, TET 91.8 0.15 5E-06 31.6 3.2 23 4-26 49-71 (222)
441 3frq_A Repressor protein MPHR( 91.8 0.097 3.3E-06 32.0 2.3 23 5-27 28-50 (195)
442 2np5_A Transcriptional regulat 91.8 0.13 4.4E-06 31.9 2.9 23 4-26 28-50 (203)
443 3anp_C Transcriptional repress 91.7 0.15 5.1E-06 31.4 3.2 23 4-26 28-50 (204)
444 2xdn_A HTH-type transcriptiona 91.7 0.12 3.9E-06 32.1 2.6 23 4-26 30-52 (210)
445 3s5r_A Transcriptional regulat 91.7 0.14 4.6E-06 31.5 2.9 23 4-26 29-51 (216)
446 3v6g_A Probable transcriptiona 91.7 0.15 5.1E-06 32.1 3.2 23 4-26 33-55 (208)
447 2dg8_A Putative TETR-family tr 91.7 0.12 4.1E-06 31.6 2.7 22 4-25 28-49 (193)
448 1vi0_A Transcriptional regulat 91.7 0.13 4.5E-06 32.0 2.9 23 4-26 27-49 (206)
449 3qbm_A TETR transcriptional re 91.6 0.096 3.3E-06 31.7 2.1 22 4-25 26-47 (199)
450 2f07_A YVDT; helix-turn-helix, 91.6 0.16 5.4E-06 31.4 3.2 23 4-26 29-51 (197)
451 3l7w_A Putative uncharacterize 91.6 0.13 4.3E-06 30.2 2.6 57 6-62 23-87 (108)
452 2hxi_A Putative transcriptiona 91.6 0.12 4.2E-06 33.7 2.8 22 5-26 49-70 (241)
453 3cjd_A Transcriptional regulat 91.6 0.14 4.7E-06 31.8 2.9 24 4-27 31-54 (198)
454 2gen_A Probable transcriptiona 91.6 0.16 5.4E-06 31.3 3.2 23 4-26 26-48 (197)
455 2nx4_A Transcriptional regulat 91.6 0.16 5.5E-06 31.2 3.2 23 4-26 29-51 (194)
456 1i3j_A I-TEVI, intron-associat 91.6 0.16 5.5E-06 31.0 3.1 23 6-28 84-106 (116)
457 3n0r_A Response regulator; sig 91.6 0.24 8.3E-06 33.4 4.3 30 3-32 125-154 (286)
458 3col_A Putative transcription 91.6 0.086 2.9E-06 31.8 1.8 21 5-25 30-50 (196)
459 3vp5_A Transcriptional regulat 91.5 0.16 5.6E-06 31.2 3.2 22 4-25 31-52 (189)
460 2zb9_A Putative transcriptiona 91.5 0.14 4.9E-06 31.7 2.9 23 4-26 42-64 (214)
461 2qlz_A Transcription factor PF 91.5 0.071 2.4E-06 35.8 1.5 36 2-37 175-210 (232)
462 3lsg_A Two-component response 91.5 0.31 1E-05 27.7 4.1 60 5-75 19-78 (103)
463 3mnl_A KSTR, transcriptional r 91.5 0.1 3.5E-06 31.8 2.1 21 5-25 40-60 (203)
464 3pas_A TETR family transcripti 91.4 0.1 3.6E-06 31.4 2.1 22 5-26 28-49 (195)
465 2hyt_A TETR-family transcripti 91.4 0.14 4.9E-06 31.4 2.8 23 4-26 31-53 (197)
466 2rae_A Transcriptional regulat 91.3 0.17 5.8E-06 31.0 3.1 23 4-26 36-58 (207)
467 3mn2_A Probable ARAC family tr 91.3 0.31 1.1E-05 27.9 4.0 62 4-75 17-79 (108)
468 3hot_A Transposable element ma 91.3 0.18 6.2E-06 34.1 3.4 25 5-29 86-110 (345)
469 3oou_A LIN2118 protein; protei 91.3 0.31 1.1E-05 28.0 4.0 61 4-75 20-80 (108)
470 3bni_A Putative TETR-family tr 91.2 0.18 6E-06 31.9 3.2 23 4-26 62-84 (229)
471 2qwt_A Transcriptional regulat 91.2 0.17 5.7E-06 31.2 3.0 22 5-26 32-53 (196)
472 1t33_A Putative transcriptiona 91.1 0.18 6.1E-06 31.3 3.1 22 6-27 32-53 (224)
473 2zcx_A SCO7815, TETR-family tr 91.1 0.18 6.2E-06 32.3 3.2 22 4-25 42-63 (231)
474 3g7r_A Putative transcriptiona 91.1 0.18 6.2E-06 31.6 3.1 23 4-26 54-76 (221)
475 2xpw_A Tetracycline repressor 91.1 0.11 3.9E-06 33.0 2.1 22 5-26 23-44 (207)
476 2rek_A Putative TETR-family tr 91.1 0.17 5.8E-06 31.0 2.9 22 5-26 35-56 (199)
477 3kkc_A TETR family transcripti 91.1 0.11 3.8E-06 31.1 2.0 21 5-25 32-52 (177)
478 1zk8_A Transcriptional regulat 91.1 0.079 2.7E-06 32.0 1.3 21 5-25 28-48 (183)
479 1ui5_A A-factor receptor homol 91.0 0.19 6.6E-06 31.5 3.2 23 4-26 28-50 (215)
480 3crj_A Transcription regulator 91.0 0.12 4E-06 32.1 2.1 22 4-25 33-54 (199)
481 2qc0_A Uncharacterized protein 91.0 0.18 6E-06 35.7 3.2 34 6-39 312-345 (373)
482 3nxc_A HTH-type protein SLMA; 91.0 0.11 3.6E-06 31.9 1.9 21 5-25 45-65 (212)
483 3mvp_A TETR/ACRR transcription 90.9 0.18 6.1E-06 30.9 2.9 23 4-26 45-67 (217)
484 2guh_A Putative TETR-family tr 90.9 0.19 6.4E-06 31.7 3.1 23 5-27 59-81 (214)
485 2xvc_A ESCRT-III, SSO0910; cel 90.9 0.32 1.1E-05 26.4 3.5 31 6-36 26-56 (59)
486 1rkt_A Protein YFIR; transcrip 90.9 0.12 4.2E-06 31.9 2.1 22 4-25 31-52 (205)
487 2id3_A Putative transcriptiona 90.9 0.19 6.5E-06 31.7 3.1 24 4-27 59-82 (225)
488 3eqx_A FIC domain containing t 90.9 0.13 4.6E-06 36.5 2.5 34 6-39 312-345 (373)
489 2ras_A Transcriptional regulat 90.8 0.099 3.4E-06 32.3 1.6 23 4-26 30-52 (212)
490 1ojl_A Transcriptional regulat 90.8 0.067 2.3E-06 36.4 0.9 25 3-27 279-303 (304)
491 3cdl_A Transcriptional regulat 90.8 0.13 4.3E-06 31.9 2.1 22 4-25 28-49 (203)
492 3oio_A Transcriptional regulat 90.7 0.37 1.3E-05 27.8 4.0 61 4-75 22-82 (113)
493 3npi_A TETR family regulatory 90.7 0.14 4.8E-06 32.8 2.3 23 5-27 38-60 (251)
494 3nnr_A Transcriptional regulat 90.7 0.19 6.4E-06 31.5 2.9 23 4-26 24-46 (228)
495 1u8b_A ADA polyprotein; protei 90.7 0.35 1.2E-05 28.8 4.0 26 4-29 92-117 (133)
496 2gfn_A HTH-type transcriptiona 90.7 0.19 6.6E-06 31.4 2.9 23 4-26 28-50 (209)
497 3rd3_A Probable transcriptiona 90.6 0.11 3.6E-06 31.5 1.6 22 4-25 29-50 (197)
498 3eyy_A Putative iron uptake re 90.6 0.24 8E-06 30.5 3.2 36 5-40 33-73 (145)
499 2oi8_A Putative regulatory pro 90.6 0.13 4.6E-06 32.6 2.1 22 4-25 35-56 (216)
500 1j1v_A Chromosomal replication 90.6 0.4 1.4E-05 27.8 4.0 28 4-31 45-73 (94)
No 1
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=99.72 E-value=1.3e-17 Score=100.62 Aligned_cols=74 Identities=84% Similarity=1.417 Sum_probs=66.5
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHHHHHh
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~tl~El~~~L 75 (77)
...|+|.++||+.||||.+||++|+++|+++|.+.+++.+|.+++.+++++.+.|.+++.++|+++++||++.|
T Consensus 30 ~~~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l 103 (128)
T 1pdn_C 30 AADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKL 103 (128)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTTTCTTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 35799999999999999999999999999999998887766466677777888999999999999999999887
No 2
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=99.70 E-value=1.2e-16 Score=100.32 Aligned_cols=74 Identities=78% Similarity=1.300 Sum_probs=66.9
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHHHHHh
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~tl~El~~~L 75 (77)
...|+|..+||+.||||.+||++|+++|+++|.+.+++.+|.+++..+++..+.|.+++.++|++++++|++.|
T Consensus 45 ~~~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l 118 (149)
T 1k78_A 45 AHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRL 118 (149)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 35799999999999999999999999999999998887766546777888899999999999999999999887
No 3
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-16 Score=100.79 Aligned_cols=74 Identities=78% Similarity=1.301 Sum_probs=65.8
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHHHHHh
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~tl~El~~~L 75 (77)
...|+|.++||+.||||.+||++|+++|+++|.+.+++.+|.+++..+++..+.|.+++.++|++++++|++.|
T Consensus 38 ~~~G~s~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l 111 (159)
T 2k27_A 38 AHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRL 111 (159)
T ss_dssp HHHTCCHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHCSSSCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHCccchHHHHHHHH
Confidence 35799999999999999999999999999999998887766546666777888999999999999999999887
No 4
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=99.44 E-value=2.6e-13 Score=83.33 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=58.7
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHHHHHh
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~tl~El~~~L 75 (77)
.+.|+|.++||+.||||.+||++|+++|.+.|...+ .++++.++++....|.++ ..+|+.+..+|++.|
T Consensus 19 ~~~G~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~----~gr~~~l~~~~~~~i~~~-~~~~~~s~~~i~~~l 87 (141)
T 1u78_A 19 KLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKR----APRRKALSVRDERNVIRA-ASNSCKTARDIRNEL 87 (141)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCC----CCCCCSSCHHHHHHHHHH-HHHCCCCHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHcccccCCcCC----CCCCCcCCHHHHHHHHHH-HhCCCCCHHHHHHHH
Confidence 468999999999999999999999999999886543 235667888777788887 788999999999876
No 5
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=99.31 E-value=5.2e-12 Score=87.16 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=59.0
Q ss_pred ccCCCCHHHHHHHhc-------cCHHHHHHHHHHHHHhcC--CCccccCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHHH
Q psy15513 2 AAAGVRPCVISRQLR-------VSHGCVSKILNRYQETGS--IRPGVIGGSKPRVATPDVERRIEEYKGENPAMFSWEIR 72 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~-------VS~stv~r~~~r~r~tG~--v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~tl~El~ 72 (77)
++.|.|..+||+.|+ ||.+||++|+++|++ |. +.+++.+| +|+..++ +.|.++++++|+.|+.||+
T Consensus 19 ~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~~~-g~~~l~~~~r~g-rp~~~~~---~~i~~~v~~~~~~t~~~ia 93 (345)
T 3hot_A 19 FHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKS-GDFDVDDKEHGK-PPKRYED---AELQALLDEDDAQTQKQLA 93 (345)
T ss_dssp HHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHHTT-CCCCCSCCCCCC-CCCSSCH---HHHHHHHHHCSCCCHHHHH
T ss_pred HHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC-CCccccCCCCCC-CCCcccH---HHHHHHHHhCccchHHHHH
Confidence 568999999999977 999999999999997 64 78888776 6666654 5588899999999999999
Q ss_pred HHh
Q psy15513 73 DRL 75 (77)
Q Consensus 73 ~~L 75 (77)
+.|
T Consensus 94 ~~l 96 (345)
T 3hot_A 94 EQL 96 (345)
T ss_dssp HHT
T ss_pred HHH
Confidence 876
No 6
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=98.84 E-value=1.3e-09 Score=66.99 Aligned_cols=72 Identities=14% Similarity=0.090 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHHHHHh
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~tl~El~~~L 75 (77)
++.+++++|..|+++.+++..|++.+.++|.+.+.+.+..-.+....+..+.|.+++++|+++|++|+++.|
T Consensus 19 ~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~l 90 (121)
T 2pjp_A 19 EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGSTCAADFRDRL 90 (121)
T ss_dssp SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCceECHHHHHHHHHHHHHHHHHCCCccHHHHHHHH
Confidence 577899999999999999999999999999999998765555555566788899999999999999999986
No 7
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=98.82 E-value=8.9e-10 Score=56.23 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=29.9
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHHHHHhcC
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQETGS 34 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~ 34 (77)
..+|+|..+||+.||||.+||++|+++|++.|.
T Consensus 18 ~~~g~s~~~IA~~lgis~~Tv~~~~~~~~~~g~ 50 (51)
T 1tc3_C 18 KLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGT 50 (51)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHCSTTTTC
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHhhHHhcCC
Confidence 357999999999999999999999999988774
No 8
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=98.53 E-value=7.7e-08 Score=56.30 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=28.4
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcC
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGS 34 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~ 34 (77)
|.|..+||+.||||.+||++|+++|...|.
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHCCCST
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHhhcCc
Confidence 899999999999999999999999998764
No 9
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=98.32 E-value=4.5e-06 Score=50.64 Aligned_cols=69 Identities=10% Similarity=0.063 Sum_probs=45.1
Q ss_pred cCCCCH-HHHHHHhccCHHHHHHHHHHHHH-------hcCCCccccCCCCCCCCCHHHHHHHHHHHHhC----CCCcHHH
Q psy15513 3 AAGVRP-CVISRQLRVSHGCVSKILNRYQE-------TGSIRPGVIGGSKPRVATPDVERRIEEYKGEN----PAMFSWE 70 (77)
Q Consensus 3 ~~G~s~-~~iA~rf~VS~stv~r~~~r~r~-------tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~----pd~tl~E 70 (77)
+.|.+. +++|+.||||.+||++|++.+.. .+...+.. . ..+....++.++.|..+|.+. -.+|-..
T Consensus 22 ~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~~~~~~~~~~~~~~-k-r~r~~~~~~~E~~L~~Wi~~~~~~g~pvs~~~ 99 (131)
T 1hlv_A 22 ENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYGVASTCR-K-TNKLSPYDKLEGLLIAWFQQIRAAGLPVKGII 99 (131)
T ss_dssp HCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHHHHHHHHGGGGGTC-C-CCCCCTTHHHHHHHHHHHHHHGGGTCCCCHHH
T ss_pred HCCCCcHHHHHHHhCCCHHHHHHHHhchhhhcchhhhccccchhh-c-ccCCCCCHHHHHHHHHHHHHHHHCCCCCCHHH
Confidence 456554 59999999999999999998765 45444321 1 123446677788787877543 2355444
Q ss_pred HHH
Q psy15513 71 IRD 73 (77)
Q Consensus 71 l~~ 73 (77)
|++
T Consensus 100 I~~ 102 (131)
T 1hlv_A 100 LKE 102 (131)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 10
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=98.32 E-value=2.8e-07 Score=53.41 Aligned_cols=33 Identities=9% Similarity=0.135 Sum_probs=28.9
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCC
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v 35 (77)
+.|.|..+||+.||||.+||++|+++|.+.+..
T Consensus 36 ~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~~~~ 68 (87)
T 2elh_A 36 HDGESKASVARDIGVPESTLRGWCKNEDKLRFM 68 (87)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHHHHHHHhcccc
Confidence 468999999999999999999999999875443
No 11
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=98.28 E-value=2.3e-07 Score=50.21 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=28.1
Q ss_pred cCCCC----HHHHHHHhccCHHHHHHHHHHHHHhcC
Q psy15513 3 AAGVR----PCVISRQLRVSHGCVSKILNRYQETGS 34 (77)
Q Consensus 3 ~~G~s----~~~iA~rf~VS~stv~r~~~r~r~tG~ 34 (77)
+.|.| ..++|+.||||.+|+++|+++|.+.+.
T Consensus 19 ~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~~~~~ 54 (59)
T 2glo_A 19 RNDNDCKGNQRATARKYNIHRRQIQKWLQCESNLRS 54 (59)
T ss_dssp HHCTTTTTCHHHHHHHTTSCHHHHHHHHTTHHHHHH
T ss_pred HcCCCcchHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 35778 999999999999999999999987653
No 12
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=98.22 E-value=1.7e-07 Score=48.12 Aligned_cols=27 Identities=4% Similarity=0.015 Sum_probs=24.7
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRY 29 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~ 29 (77)
..|+|..+||+.||||.+||++|++++
T Consensus 19 ~~g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 19 EKGHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HTTCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 578999999999999999999998764
No 13
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=98.08 E-value=1.2e-06 Score=51.93 Aligned_cols=31 Identities=6% Similarity=0.075 Sum_probs=28.4
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCC
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v 35 (77)
|.+..+||+.||||.+|+++|+++|...|..
T Consensus 30 g~s~~~va~~~gIs~~tl~~W~~~~~~~~~~ 60 (108)
T 2rn7_A 30 WATICSIAPKIGCTPETLRVWVRQHERDTGG 60 (108)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHTTSCC
T ss_pred cccHHHHHHHHCcCHHHHHHHHHHHHhcccc
Confidence 4789999999999999999999999988754
No 14
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=98.06 E-value=1.2e-06 Score=46.21 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=24.3
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHH
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNR 28 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r 28 (77)
...|+|..+||+.||||.+||++|+++
T Consensus 28 ~~~g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 28 AKMGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 357999999999999999999999864
No 15
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=98.06 E-value=6.1e-06 Score=47.88 Aligned_cols=60 Identities=8% Similarity=0.086 Sum_probs=44.8
Q ss_pred CccCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHH
Q psy15513 1 MAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYK 60 (77)
Q Consensus 1 l~~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v 60 (77)
|.+.+++..++|+.+|||++||++-++...+.|-|...+.|......++++....+.+.+
T Consensus 32 L~~~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~~l 91 (98)
T 3jth_A 32 LHNQELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIKLL 91 (98)
T ss_dssp TTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHHHH
Confidence 345558999999999999999999999999999998776654443344444444454444
No 16
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=98.03 E-value=3.5e-06 Score=48.44 Aligned_cols=57 Identities=16% Similarity=0.088 Sum_probs=43.0
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKG 61 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~ 61 (77)
+++..++|+.|+||++||++.+++..+.|-|...+.|....-.+++.....+.+.+.
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~l~ 94 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLK 94 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHH
Confidence 589999999999999999999999999999977664433233455545555555443
No 17
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=97.94 E-value=4.3e-06 Score=49.85 Aligned_cols=59 Identities=10% Similarity=-0.018 Sum_probs=43.4
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKG 61 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~ 61 (77)
+.+++..++|+.||||++||++.++...+.|-|...+.|....-.+++.....+.+.+.
T Consensus 36 ~~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~l~ 94 (108)
T 2kko_A 36 QGERAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARLFALVQ 94 (108)
T ss_dssp TCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHHH
Confidence 44589999999999999999999999999999987765543333344444444554443
No 18
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=97.85 E-value=2.9e-05 Score=43.91 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
.+++..++|+.||||.+||++.++...+.|-|...
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 34899999999999999999999999999999743
No 19
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=97.76 E-value=3.3e-05 Score=42.55 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=38.4
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCC-CccccCCCCCCCCCHHHHHHHHHHHHhC
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSI-RPGVIGGSKPRVATPDVERRIEEYKGEN 63 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v-~pk~~gg~~~~~~~~~~~~~i~~~v~~~ 63 (77)
++..++|+.+|||.+|+++|++. |.+ .|.+.|+.. .-...+..+||.+.+++.
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~----g~fP~piklG~~~-~w~~~ev~~Wl~~~~~~~ 64 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKS----GDLPKAKVIHGRA-RWLYRDHCEFKNKLLSRA 64 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHH----HHCCCSEESSSCE-EEEHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC----CCCCCCEEeCCCe-EEeHHHHHHHHHHHHHhh
Confidence 67889999999999999999986 554 456666533 344466677777665543
No 20
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=97.74 E-value=2.2e-05 Score=47.45 Aligned_cols=33 Identities=9% Similarity=0.012 Sum_probs=30.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCC
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v 35 (77)
..++|..++|++|+||.+++.+|.+.|++.|.-
T Consensus 48 ~g~lS~~EAa~ry~Is~~ei~~W~r~y~~~G~~ 80 (101)
T 2oa4_A 48 YGLITLAEAKQTYGLSDEEFNSWVSALAEHGKD 80 (101)
T ss_dssp HTTCCHHHHHHTTCSSHHHHHHHHHHHHCCCSS
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhHH
Confidence 356999999999999999999999999998854
No 21
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=97.72 E-value=2.1e-05 Score=47.48 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=37.7
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCC-CCCCCHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSK-PRVATPDVERRIE 57 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~-~~~~~~~~~~~i~ 57 (77)
.+|+++.+||++||||.++|+|++++.++.-+-..-| .|-. -.+..|++..+++
T Consensus 32 v~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~~~~~P-~g~~rv~v~lP~~~a~~v 86 (101)
T 2w7n_A 32 VDGKPQATFATSLGLTRGAVSQAVHRVWAAFEDKNLP-EGYARVTAVLPEHQAYIV 86 (101)
T ss_dssp TTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCCC-TTEEEEEEEECHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHhccCCC-CCeeEEeeecCHHHHHHH
Confidence 4799999999999999999999999999763211122 2232 2444455555554
No 22
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=97.70 E-value=3.3e-05 Score=45.96 Aligned_cols=36 Identities=6% Similarity=-0.119 Sum_probs=31.7
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
..+.|..++|++|+||.+++.+|.+.|.+.|.-..+
T Consensus 47 ~g~~s~~e~arry~Is~s~i~~W~r~~~~~G~~~L~ 82 (95)
T 2jrt_A 47 HGLITEREALDRYSLSEEEFALWRSAVAAHGEKALK 82 (95)
T ss_dssp TTSSCHHHHHHHTTCCHHHHHHHHHHTTTCCTTSCC
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhHHHHh
Confidence 356899999999999999999999999998866543
No 23
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=97.70 E-value=2e-05 Score=46.43 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKG 61 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~ 61 (77)
.+++..++|+.|+||++||++.+++..+.|-|...+.|....-.+++.....+...+.
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~~~ 90 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTARTLE 90 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHHHHHH
Confidence 4589999999999999999999999999999987655432223455544444444443
No 24
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=97.70 E-value=0.00023 Score=42.47 Aligned_cols=63 Identities=16% Similarity=0.051 Sum_probs=44.5
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcccc--CCCCCCCCCHHHHHH---HHHHHHhCCCCcHHHHHHHh
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI--GGSKPRVATPDVERR---IEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~--gg~~~~~~~~~~~~~---i~~~v~~~pd~tl~El~~~L 75 (77)
++++.++|+.+|||.+|+..|-+. |-+.|... +|. +.-++.+... |..+ .+-++++.|+++.+
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~----Gll~p~~r~~~g~--R~Y~~~dl~~l~~I~~l--r~~G~sl~~I~~~l 68 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDI----GLLVPSERSHAGH--RRYSDADLDRLQQILFY--RELGFPLDEVAALL 68 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHH----TSSCCSEECSSCC--EEBCHHHHHHHHHHHHH--HHTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHC----CCCCCCccCCCCC--eecCHHHHHHHHHHHHH--HHCCCCHHHHHHHH
Confidence 578999999999999999988654 99888653 333 3344444443 4444 33479999998765
No 25
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=97.66 E-value=2.5e-05 Score=45.57 Aligned_cols=48 Identities=13% Similarity=0.047 Sum_probs=38.6
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATP 50 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~ 50 (77)
+..++..++|+.+|||++||++-++...+.|=|...+.|......+++
T Consensus 34 ~~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (102)
T 3pqk_A 34 EGEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTE 81 (102)
T ss_dssp TCCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECS
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECc
Confidence 345899999999999999999999999999999877666443333443
No 26
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=97.66 E-value=2.6e-05 Score=47.33 Aligned_cols=51 Identities=18% Similarity=0.102 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVER 54 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~ 54 (77)
.+++..++|+.||||++||++.++...+.|-|...+.|....-.+++....
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~ 105 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIR 105 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHH
Confidence 458999999999999999999999999999997766554333333433333
No 27
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=97.65 E-value=2.5e-05 Score=49.47 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=48.3
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHh
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGE 62 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~ 62 (77)
.+..++..+||+.|+||++||++-++..++.|=|...+.|..+.-.+++.....+.+++..
T Consensus 68 ~~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~~l~~ 128 (151)
T 3f6v_A 68 TSGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRALFDS 128 (151)
T ss_dssp GGCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHHH
Confidence 3455899999999999999999999999999999877666444445676666666666654
No 28
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=97.64 E-value=3e-05 Score=46.78 Aligned_cols=29 Identities=7% Similarity=0.141 Sum_probs=25.3
Q ss_pred CC-CCHHHHHHHhccCHHHHHHHHHHHHHhc
Q psy15513 4 AG-VRPCVISRQLRVSHGCVSKILNRYQETG 33 (77)
Q Consensus 4 ~G-~s~~~iA~rf~VS~stv~r~~~r~r~tG 33 (77)
.| ++.++||+.+|||.|||+|. ++.-...
T Consensus 56 ~ge~TQREIA~~lGiS~stISRi-~r~L~~l 85 (101)
T 1jhg_A 56 RGEMSQRELKNELGAGIATITRG-SNSLKAA 85 (101)
T ss_dssp HCCSCHHHHHHHHCCCHHHHHHH-HHHHHHS
T ss_pred cCCcCHHHHHHHHCCChhhhhHH-HHHHHHc
Confidence 67 99999999999999999999 7766543
No 29
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=97.64 E-value=9e-05 Score=49.12 Aligned_cols=68 Identities=10% Similarity=-0.034 Sum_probs=43.9
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHH-HhcCCCccccCCCCCCCCCHHHHHHHHHHHHhC--CCCcHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQ-ETGSIRPGVIGGSKPRVATPDVERRIEEYKGEN--PAMFSWEIRDR 74 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r-~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~--pd~tl~El~~~ 74 (77)
..|+++.+||++||||+++|+||++..+ ..|-+.-=|.- ..+.-.....+..+.+.. .++++.||.+.
T Consensus 22 ~~g~tQ~eIA~~lGiSr~~VSR~L~~A~~~~~lv~lfp~~----~~ls~p~~~~L~k~~~~l~~~~~~l~eLi~~ 92 (192)
T 1zx4_A 22 NDGMSQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQ----SELTFSDYKTLCAVGDEMGNKNLEFDQLIQN 92 (192)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHTSCHHHHTTCSCG----GGCCHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHHHhccchhhHHHcCCc----ccCccchHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 5799999999999999999999999988 66655544321 112222344455544432 33455555443
No 30
>4fcy_A Transposase; rnaseh, DDE transposase, DNA binding protein-DNA complex; HET: DNA; 3.71A {Enterobacteria phage MU} PDB: 2ezk_A 2ezl_A 2ezh_A 2ezi_A
Probab=97.63 E-value=0.00014 Score=52.74 Aligned_cols=70 Identities=9% Similarity=-0.037 Sum_probs=44.1
Q ss_pred cCCCCHH----HHHHHhccCHHHHHHHHHHHHHhcC------CCccccCCC---CCCCCCHHHHHHHHHHHHhCCCCcHH
Q psy15513 3 AAGVRPC----VISRQLRVSHGCVSKILNRYQETGS------IRPGVIGGS---KPRVATPDVERRIEEYKGENPAMFSW 69 (77)
Q Consensus 3 ~~G~s~~----~iA~rf~VS~stv~r~~~r~r~tG~------v~pk~~gg~---~~~~~~~~~~~~i~~~v~~~pd~tl~ 69 (77)
..|.+.. .+|+.+|||.+|++||+++|+..|. +.|+..+.. +.....++..+.|.+.....+..++.
T Consensus 46 ~~g~~~~~a~~~~a~~~gvS~~Tl~rW~~~y~~~~~~~gl~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~yl~~~~~s~~ 125 (529)
T 4fcy_A 46 NQGISTKTAFATVAGHYQVSASTLRDKYYQVQKFAKPDWAAALVDGRGASRRNVHKSEFDEDAWQFLIADYLRPEKPAFR 125 (529)
T ss_dssp HTTCCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSCGGGHHHHHC------------CCCCHHHHHHHHHHHTSTTCCCHH
T ss_pred hcCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCcccCceecccCCCCCCCCCCcCcCCHHHHHHHHHHHhCcCCCCHH
Confidence 3566654 4599999999999999999986553 355532221 12345677777888777666666665
Q ss_pred HHH
Q psy15513 70 EIR 72 (77)
Q Consensus 70 El~ 72 (77)
.+-
T Consensus 126 ~~~ 128 (529)
T 4fcy_A 126 KCY 128 (529)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 31
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=97.63 E-value=2.4e-05 Score=43.21 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=23.9
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcccc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI 40 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~ 40 (77)
++..++|+.||||.+|+++|.+. |. |...
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~----G~--P~~~ 31 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ----GM--PVLR 31 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT----TC--CCSS
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC----CC--CeEe
Confidence 46789999999999999999865 76 5443
No 32
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=97.60 E-value=1.9e-05 Score=47.54 Aligned_cols=59 Identities=10% Similarity=0.142 Sum_probs=44.8
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKG 61 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~ 61 (77)
+..++..++|+.||||++||++-++...+.|-|...+.|....-.+++.....+.+++.
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~~ 87 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWLA 87 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHHH
Confidence 44589999999999999999999999999999987776644444455545555544443
No 33
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=97.59 E-value=5e-05 Score=44.26 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=34.1
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
.++|++..+||+.||||.++|.+-+.+..+.|-|.-.
T Consensus 27 ~~~g~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 27 GIEGATAAQLTRQLNMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp SSSTEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEC
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 4678999999999999999999999999999999765
No 34
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=97.58 E-value=3.9e-05 Score=45.26 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=34.8
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccC
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIG 41 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~g 41 (77)
+.+++..++|+.+|||++||++.++...+.|-|...+.|
T Consensus 37 ~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 37 VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQG 75 (106)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 356899999999999999999999999999999876654
No 35
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=97.57 E-value=7.6e-05 Score=44.03 Aligned_cols=67 Identities=21% Similarity=0.131 Sum_probs=37.3
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc----ccCCCCCC--CCCHHHHHHHHHHHHhCCCCcHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG----VIGGSKPR--VATPDVERRIEEYKGENPAMFSWEIRDR 74 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk----~~gg~~~~--~~~~~~~~~i~~~v~~~pd~tl~El~~~ 74 (77)
.++.+++|+.||||++||++-+++..+.|-|... +.+|.... ..++. .+.+++...-+..+..+..+
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~~~~~~~~---~i~~~~~~~~~~~~e~l~~~ 105 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWKPNID---QINEILLNRKRLILDKLKTR 105 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEEEEECTHH---HHC-----------------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecccCCCceEEEEeecCHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999776 55543323 34432 24444433333444444433
No 36
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=97.53 E-value=6.1e-05 Score=43.33 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=34.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcccc
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI 40 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~ 40 (77)
..+++..++|+.||||++||++.++...+.|-|...+.
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 45689999999999999999999999999999976544
No 37
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=97.51 E-value=0.00043 Score=39.19 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=44.2
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccC-CCCCCCCCHHHHHH---HHHHHHhCCCCcHHHHHHHh
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIG-GSKPRVATPDVERR---IEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~g-g~~~~~~~~~~~~~---i~~~v~~~pd~tl~El~~~L 75 (77)
-+++.++|+.+|||.+|+..|-+. .|-+.|.... ++. +.-++++... |..+.. +-++++.|+++.|
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~~---~gl~~p~r~~~~g~-R~Y~~~dl~~l~~I~~l~~-~~G~sl~ei~~~l 74 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWERR---YGFPRPLRSEGNNY-RVYSREEVEAVRRVARLIQ-EEGLSVSEAIAQV 74 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHHH---TCCSCCBSSSCSSS-CEECHHHHHHHHHHHHHHH-HTSTHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHh---CCCCCCcCCCCCCe-eecCHHHHHHHHHHHHHHH-HCCCCHHHHHHHH
Confidence 478999999999999999988544 3666775432 222 3344444544 444431 3469999999876
No 38
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=97.49 E-value=0.00013 Score=38.59 Aligned_cols=33 Identities=18% Similarity=0.096 Sum_probs=28.9
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCC
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v 35 (77)
..|+|..+||..+|||.+||...+++.++.=.+
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 479999999999999999999999998865433
No 39
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=97.48 E-value=6.1e-05 Score=45.86 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=35.6
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCC
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG 42 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg 42 (77)
.+.+++..++|+.||||+++|++.++...+.|-+...+.|.
T Consensus 56 ~~~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~gr 96 (122)
T 1r1t_A 56 ARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGR 96 (122)
T ss_dssp TTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34468999999999999999999999999999998766553
No 40
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=97.47 E-value=0.00057 Score=42.58 Aligned_cols=70 Identities=13% Similarity=0.028 Sum_probs=46.1
Q ss_pred CCCCHHHHHH----Hh--ccCHHHHHHHHHHHHHhcCC-Cccc-cCCCCCCCCCHHHHHHHHHHHHh---CCCCcHHHHH
Q psy15513 4 AGVRPCVISR----QL--RVSHGCVSKILNRYQETGSI-RPGV-IGGSKPRVATPDVERRIEEYKGE---NPAMFSWEIR 72 (77)
Q Consensus 4 ~G~s~~~iA~----rf--~VS~stv~r~~~r~r~tG~v-~pk~-~gg~~~~~~~~~~~~~i~~~v~~---~pd~tl~El~ 72 (77)
.+++..++|+ .| +||.+||++|++...+--+. ...+ ..-..+....++.++.+..++.+ ++.+|-..|+
T Consensus 29 ~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~~l~~~~~~~~~~kr~r~~~~~~le~~L~~Wi~~~~~~~~it~~~I~ 108 (144)
T 1iuf_A 29 NRSGQQDLIEWFREKFGKDISQPSVSQILSSKYSYLDNTVEKPWDVKRNRPPKYPLLEAALFEWQVQQGDDATLSGETIK 108 (144)
T ss_dssp SCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHHHTTTSCSSSSSSSCCCCCSCHHHHHHHHHHHHHTCTTCCCSSHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHHHhhhcccccccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 4589999999 99 99999999999987653222 1111 11112345567777777777766 5567755555
Q ss_pred H
Q psy15513 73 D 73 (77)
Q Consensus 73 ~ 73 (77)
+
T Consensus 109 ~ 109 (144)
T 1iuf_A 109 R 109 (144)
T ss_dssp H
T ss_pred H
Confidence 4
No 41
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=97.47 E-value=0.00018 Score=38.78 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=27.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHh
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQET 32 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~t 32 (77)
-.|+|..+||..+|||.+||.+++.+.++.
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVARARDA 58 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 479999999999999999999999987653
No 42
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.47 E-value=9.2e-05 Score=40.92 Aligned_cols=34 Identities=12% Similarity=0.236 Sum_probs=31.3
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
.+|..+||+.||||.+||.+.++.+++.|-|...
T Consensus 25 ~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~ 58 (67)
T 2heo_A 25 PVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSP 58 (67)
T ss_dssp CEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecC
Confidence 4899999999999999999999999999998653
No 43
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=97.47 E-value=0.00039 Score=41.43 Aligned_cols=64 Identities=17% Similarity=0.099 Sum_probs=43.1
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHH---HHHHHHhCCCCcHHHHHHHh
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERR---IEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~---i~~~v~~~pd~tl~El~~~L 75 (77)
+++.++|+.+|||.+|+..|-+ .|-+.|.....+..+.-++.+... |..+. +-++++.|+.+.+
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~----~Gll~p~~~~~~g~R~Y~~~dl~~l~~I~~l~--~~G~~l~~I~~~l 69 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDN----IELLNPSALTDAGYRLYSDADLERLQQILFFK--EIGFRLDEIKEML 69 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHH----TTSSCCSEECTTCCEEBCHHHHHHHHHHHHHH--HTTCCHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHH----CCCCCCCeECCCCCeeeCHHHHHHHHHHHHHH--HCCCCHHHHHHHH
Confidence 6889999999999999998854 598888652211223344544443 33432 3368899988765
No 44
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=97.44 E-value=0.00013 Score=39.71 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=27.2
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHh
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQET 32 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~t 32 (77)
..|+|..+||..||||.+||++++++.++.
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAMQK 53 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 479999999999999999999999997654
No 45
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=97.44 E-value=0.0001 Score=42.12 Aligned_cols=57 Identities=11% Similarity=0.112 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCC---CCCCHHHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKP---RVATPDVERRIEEYK 60 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~---~~~~~~~~~~i~~~v 60 (77)
.+++..++|+.++||++||++.+++..+.|-|...+..++++ -.+++.-.+.+..+.
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~ 88 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFL 88 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHH
Confidence 458999999999999999999999999999997543222222 245665544444444
No 46
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=97.44 E-value=3.1e-05 Score=46.72 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=38.4
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPD 51 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~ 51 (77)
+..++..++|+.||||++||++.++...+.|-|...+.|....-.+++.
T Consensus 32 ~~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~ 80 (118)
T 2jsc_A 32 DGVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADS 80 (118)
T ss_dssp TTCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEECCEEEEEEChH
Confidence 3458899999999999999999999999999998776554333334443
No 47
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=97.43 E-value=0.00013 Score=41.56 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=31.4
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
+++..+||+.||||.+||.+.+.+..+.|-|.-.
T Consensus 31 ~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 31 ATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp CEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 6899999999999999999999999999998543
No 48
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=97.43 E-value=0.00014 Score=43.89 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=32.5
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCC
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSK 44 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~ 44 (77)
..|++..++|+.++||++||++.+++..+.|=|.-.+...++
T Consensus 49 ~~~~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~ 90 (146)
T 3tgn_A 49 EESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDA 90 (146)
T ss_dssp TCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred hCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCC
Confidence 445999999999999999999999999999999766543333
No 49
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=97.41 E-value=0.00016 Score=41.43 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=33.9
Q ss_pred CC-CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc-cCCC
Q psy15513 4 AG-VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV-IGGS 43 (77)
Q Consensus 4 ~G-~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~-~gg~ 43 (77)
.| ++..++|+.|+||.+||.+-+..+.+.|-+..-+ +||.
T Consensus 14 ~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~~~~Gga 55 (78)
T 1xn7_A 14 RGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDG 55 (78)
T ss_dssp SCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECCCCCC
T ss_pred cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCcCCC
Confidence 44 8999999999999999999999999999986542 3443
No 50
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=97.41 E-value=0.00015 Score=50.14 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=36.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCC
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG 42 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg 42 (77)
..|++..++|++|+||..||+|.++..++.|-|.-+-+||
T Consensus 19 ~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri~g~ 58 (315)
T 2w48_A 19 EQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYD 58 (315)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEecCC
Confidence 4679999999999999999999999999999998555665
No 51
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=97.40 E-value=2.3e-05 Score=50.69 Aligned_cols=32 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred CccCCCCHHHHHHHhccCHHHHHHHHHHHHHh
Q psy15513 1 MAAAGVRPCVISRQLRVSHGCVSKILNRYQET 32 (77)
Q Consensus 1 l~~~G~s~~~iA~rf~VS~stv~r~~~r~r~t 32 (77)
|..+|+|..+||+.||||.+|++||++.....
T Consensus 154 l~~~G~s~~~Ia~~l~vs~~Tvyr~l~~~~~~ 185 (193)
T 3uj3_X 154 LLAQGIPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp --------------------------------
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHHHhhhc
Confidence 45689999999999999999999999986654
No 52
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=97.40 E-value=4e-05 Score=44.87 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYK 60 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v 60 (77)
.+++.+++|+.+|+|+++|++-++..++. -+...+.|....-.++++....+.+++
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~~~~l 95 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEGIIKLL 95 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHHHHHHH
Confidence 45899999999999999999999999998 776665554333344444455454443
No 53
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=97.38 E-value=0.00041 Score=41.76 Aligned_cols=56 Identities=11% Similarity=0.035 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERRIEEY 59 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~i~~~ 59 (77)
.|+++.++|+.++|++++|++.+++..+.|-|.-.+...+++. .+|+.-.+.+.++
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~ 110 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESL 110 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence 5689999999999999999999999999999987665555542 4566544444443
No 54
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=97.37 E-value=0.00014 Score=43.66 Aligned_cols=42 Identities=29% Similarity=0.377 Sum_probs=35.8
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCC
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSK 44 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~ 44 (77)
+.+++..++|+.+++|++||++.+++..+.|=|...+..+++
T Consensus 39 ~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 39 DKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGER 80 (152)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCS
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 456999999999999999999999999999999766533333
No 55
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=97.36 E-value=0.00041 Score=41.51 Aligned_cols=52 Identities=19% Similarity=0.123 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERR 55 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~ 55 (77)
.|+++.++|+.++||+++|++.+++..+.|-|.-.+...+++. .+|+.-.+.
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~ 100 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKL 100 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHH
Confidence 4789999999999999999999999999999976655445543 355554443
No 56
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=97.34 E-value=0.0002 Score=40.66 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=28.1
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhc
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETG 33 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG 33 (77)
..|+|..+||+.||||.+||...+++.++.=
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLKKM 64 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999987654
No 57
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=97.34 E-value=0.00019 Score=39.72 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=20.2
Q ss_pred CCHHHHHHHhccCHHHHHHHHH
Q psy15513 6 VRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~ 27 (77)
++..+||++.|||++||+++++
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 4788999999999999999995
No 58
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=97.31 E-value=0.00082 Score=40.04 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERRI 56 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~i 56 (77)
.++++.++|+.+++|+++|++.+++..+.|-|.-.+.+.+++. .+|+.-.+.+
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHH
Confidence 5689999999999999999999999999999976655444442 4566544433
No 59
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=97.31 E-value=0.002 Score=40.28 Aligned_cols=65 Identities=17% Similarity=0.028 Sum_probs=44.5
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHH---HHHHHHHhCCCCcHHHHHHHh
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVER---RIEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~---~i~~~v~~~pd~tl~El~~~L 75 (77)
.+++.++|+.+|||..|+..|-+. |-+.|.....+..+.-++.+.. +|..+. .-++++.||++.|
T Consensus 2 ~~~I~e~A~~~gvs~~tLR~Ye~~----GLl~p~~r~~~g~R~Y~~~dl~~l~~I~~lr--~~G~sL~eIk~~l 69 (142)
T 3gp4_A 2 SLNIKEASEKSGVSADTIRYYERI----GLIPPIHRNESGVRKFGAEDLRWILFTRQMR--RAGLSIEALIDYL 69 (142)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHH----TSSCCCCBCTTSCBCBCHHHHHHHHHHHHHH--HTTCCHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHC----CCCCCCcCCCCCCeeeCHHHHHHHHHHHHHH--HcCCCHHHHHHHH
Confidence 478999999999999999887554 9998833322222334444444 455553 3479999998765
No 60
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=97.28 E-value=0.0003 Score=41.80 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccC
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIG 41 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~g 41 (77)
.+++..++|+.++||++||++.+++..+.|-+.-.+.|
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~~~ 81 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRAG 81 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEEET
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 46899999999999999999999999999988655433
No 61
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=97.28 E-value=0.00059 Score=41.38 Aligned_cols=52 Identities=10% Similarity=0.164 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERR 55 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~ 55 (77)
.|+++.++|+.++||+++|++.+++..+.|-|.-.+...+++. .+|+.-.+.
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~ 110 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAAL 110 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHH
Confidence 5799999999999999999999999999999987765555542 355544433
No 62
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=97.27 E-value=0.00045 Score=41.92 Aligned_cols=51 Identities=16% Similarity=0.194 Sum_probs=37.4
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAMFSWEI 71 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~tl~El 71 (77)
+.|+|+.++|+.+|||++||++|-+ |...|. .. ...+..++..+|+. +.+|
T Consensus 82 ~~glsq~~la~~~g~s~~~i~~~E~-----g~~~p~-----------~~-~~~l~~~~~~~p~~-~~~l 132 (133)
T 3o9x_A 82 KLSLTQKEASEIFGGGVNAFSRYEK-----GNAQPH-----------PS-TIKLLRVLDKHPEL-LNEI 132 (133)
T ss_dssp HTTCCHHHHHHHHCSCTTHHHHHHH-----TSSCCC-----------HH-HHHHHHHHHHCGGG-HHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHC-----CCCCCC-----------HH-HHHHHHHHccCHHH-HHHh
Confidence 4799999999999999999999854 543332 11 35577888889875 4444
No 63
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.27 E-value=0.00039 Score=41.69 Aligned_cols=42 Identities=10% Similarity=0.224 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCC
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKP 45 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~ 45 (77)
.+++..++|+.++||+++|++.+++..+.|-|.-.+...+++
T Consensus 51 ~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R 92 (146)
T 2fbh_A 51 DSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRR 92 (146)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBC
T ss_pred CCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccC
Confidence 568999999999999999999999999999997665443443
No 64
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=97.27 E-value=0.00099 Score=39.94 Aligned_cols=54 Identities=7% Similarity=0.068 Sum_probs=41.2
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERRI 56 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~i 56 (77)
..+++..++|+.++||+++|++.+++..+.|-|.-.+...+++. .+|+.-...+
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 35689999999999999999999999999999976655444432 4566544433
No 65
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=97.26 E-value=0.00015 Score=38.96 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=22.1
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.| |..++|+++|||+++|++|++
T Consensus 12 ~~g-s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 12 EHG-TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp HTC-CHHHHHHHHTSCHHHHHHHHH
T ss_pred HcC-CHHHHHHHHCcCHHHHHHHHc
Confidence 468 999999999999999999993
No 66
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=97.25 E-value=0.00036 Score=39.92 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=31.4
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
.|.+|||+.||||.+||.+-++...+.|-+.--+
T Consensus 25 psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 25 VKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecC
Confidence 5799999999999999999999999999997654
No 67
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=97.24 E-value=0.00065 Score=40.90 Aligned_cols=52 Identities=10% Similarity=0.024 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERR 55 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~ 55 (77)
.|+++.++|+.++||+++|++.+++..+.|-|.-.+...+++. .+|+.-.+.
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~ 104 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKE 104 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHH
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHH
Confidence 5689999999999999999999999999999976665445443 355554443
No 68
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=97.24 E-value=0.0018 Score=40.06 Aligned_cols=62 Identities=10% Similarity=0.086 Sum_probs=42.4
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcccc--CCCCCCCCCHHHHH---HHHHHHHhCCCCcHHHHHHHh
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI--GGSKPRVATPDVER---RIEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~--gg~~~~~~~~~~~~---~i~~~v~~~pd~tl~El~~~L 75 (77)
|++.++|+.+|||..|+..|-+ .|-+.|... +|. +.-++.+.. +|..+. +-++++.|+++.|
T Consensus 1 ~~I~e~A~~~gvs~~tLR~ye~----~Gll~p~~r~~~g~--R~Y~~~dl~~l~~I~~lr--~~G~sl~eI~~~l 67 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEE----KGLVTPPMRSENGY--RTYTQQHLNELTLLRQAR--QVGFNLEESGELV 67 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH----TTCSCCCEECTTSC--EECCHHHHHHHHHHHHHH--HTTCCHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHH----CCCCCCCccCCCCC--eeeCHHHHHHHHHHHHHH--HCCCCHHHHHHHH
Confidence 6889999999999999988854 588877532 333 334444444 344443 3479999998765
No 69
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=97.24 E-value=0.00086 Score=40.48 Aligned_cols=54 Identities=19% Similarity=0.089 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCC---CCCCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKP---RVATPDVERRIE 57 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~---~~~~~~~~~~i~ 57 (77)
.+++..++|+.++||+++|++.+++..+.|=|.-.+...+++ -.+|+.-.+.+.
T Consensus 53 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~ 109 (148)
T 3nrv_A 53 SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHH
Confidence 468999999999999999999999999999997665444443 245555444333
No 70
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=97.23 E-value=0.00045 Score=39.64 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=26.4
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQE 31 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~ 31 (77)
-.|+|..+||..||||.+||..++.+.+.
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKSRLHYAVR 79 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 47999999999999999999999988764
No 71
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=97.22 E-value=0.00027 Score=40.77 Aligned_cols=36 Identities=17% Similarity=0.010 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
.+++..++|+.|+||++||++.++.+.+.|-|...+
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 458999999999999999999999999999997655
No 72
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=97.22 E-value=0.00067 Score=40.87 Aligned_cols=53 Identities=9% Similarity=0.069 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERRI 56 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~i 56 (77)
.|+++.++|+.++||+++|++.+++..+.|-|.-.+...+++. .+|+.-.+.+
T Consensus 50 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 50 RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHH
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHH
Confidence 5799999999999999999999999999999976665444442 3555444433
No 73
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=97.22 E-value=0.00084 Score=37.22 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=31.1
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhC
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGEN 63 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~ 63 (77)
++..+||++.|||++||++++. | ++. ..++..+.|.+.+++.
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln-------------~--~~~-vs~~t~~rV~~~a~~l 51 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALM-------------N--PDK-VSQATRNRVEKAAREV 51 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTT-------------C--CCC-SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHc-------------C--CCC-CCHHHHHHHHHHHHHh
Confidence 6899999999999999999883 1 112 3466677777766653
No 74
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=97.22 E-value=0.00054 Score=37.22 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHh
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQET 32 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~t 32 (77)
.|+|..+||..+|||.+||..++.+-++.
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRK 52 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 79999999999999999999999987764
No 75
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=97.21 E-value=0.00048 Score=42.73 Aligned_cols=43 Identities=9% Similarity=0.227 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR 46 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~ 46 (77)
.|.++.++|+.++|+++||++.+++..+.|-|.-.+...+++.
T Consensus 45 ~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~ 87 (151)
T 4aik_A 45 PEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRA 87 (151)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTC
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcc
Confidence 5688899999999999999999999999999987776666653
No 76
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=97.21 E-value=0.00045 Score=41.28 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=35.6
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCC
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKP 45 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~ 45 (77)
++++.++|+.++||+++|++.+++..+.|-|.-.+...+++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R 90 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSR 90 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCC
Confidence 69999999999999999999999999999997665544443
No 77
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=97.20 E-value=0.0014 Score=44.05 Aligned_cols=66 Identities=20% Similarity=0.171 Sum_probs=41.9
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHH--HhCCCCcHHHHHHHh
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYK--GENPAMFSWEIRDRL 75 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v--~~~pd~tl~El~~~L 75 (77)
|++.++|+.+|||.+|+..|-+ .|-+.|.....+..+.-++.+...|.... ....++++.||++.|
T Consensus 1 ~~IgevA~~~Gvs~~TLRyYE~----~GLl~p~~R~~~gyR~Y~~~dl~~L~~I~~lr~~~G~sL~eIk~~l 68 (222)
T 2dg6_A 1 MRLADLSKRSGVSTATIKYYLR----EGLLPPGRQVNATTAEYDEDHLRRLRLVRALIQVGKVPVATAREVL 68 (222)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH----HTSSCCC---------CCHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHH----CCCCCCCeeCCCCceeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6889999999999999988754 49888743322222344555565554332 233369999998866
No 78
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=97.19 E-value=0.001 Score=41.08 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERRI 56 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~i 56 (77)
.|+++.++|+.++|++++|++.+++..+.|-|.-.+...+++. .+|+.-.+.+
T Consensus 59 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 59 PNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL 114 (162)
T ss_dssp TTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence 5799999999999999999999999999999987665555553 4556544433
No 79
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=97.19 E-value=0.00048 Score=41.65 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=26.7
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQE 31 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~ 31 (77)
-.|+|..+||..+|||.+||++++.+-+.
T Consensus 36 ~~g~s~~EIA~~lgiS~~tV~~~l~ra~~ 64 (113)
T 1s7o_A 36 ADDYSLAEIADEFGVSRQAVYDNIKRTEK 64 (113)
T ss_dssp HTCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 47999999999999999999999998775
No 80
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=97.19 E-value=0.001 Score=40.09 Aligned_cols=53 Identities=11% Similarity=0.004 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERRI 56 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~i 56 (77)
.|+++.++|+.++|+++||++.+++..+.|-|.-.+...+++. .+|+.-.+.+
T Consensus 44 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 44 GSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 4699999999999999999999999999999976655444442 4566544433
No 81
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=97.18 E-value=0.00039 Score=38.40 Aligned_cols=31 Identities=19% Similarity=0.087 Sum_probs=28.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhc
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETG 33 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG 33 (77)
-.|++..+||..||||.+||..++.+.++.=
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANVMAKM 59 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999988653
No 82
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=97.18 E-value=0.00046 Score=39.73 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=31.4
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
+++..+||+.||||.++|.+.+.+..+.|-|.-.
T Consensus 27 ~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 27 ATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 4899999999999999999999999999998643
No 83
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=97.18 E-value=0.00024 Score=39.49 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.5
Q ss_pred CHHHHHHHhccCHHHHHHHHHH
Q psy15513 7 RPCVISRQLRVSHGCVSKILNR 28 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r 28 (77)
+..++|+.||||+++|++|++.
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~ 36 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKR 36 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHh
Confidence 8999999999999999999943
No 84
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=97.17 E-value=6.7e-05 Score=40.66 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
.|.+..++|+.+|||+++|++|.
T Consensus 9 ~~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 9 HFGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHSSHHHHHHHHTCCHHHHHHCC
T ss_pred HcCCHHHHHHHhCCCHHHHHHHH
Confidence 45699999999999999999996
No 85
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=97.17 E-value=0.00031 Score=39.65 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=19.6
Q ss_pred CHHHHHHHhccCHHHHHHHHH
Q psy15513 7 RPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~ 27 (77)
+..++|+.||||+++|++|+.
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~ 32 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQ 32 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHh
Confidence 578999999999999999996
No 86
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=97.17 E-value=0.00029 Score=37.13 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=23.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+.+|||++++++|.+
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4799999999999999999999964
No 87
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=97.16 E-value=0.0019 Score=40.58 Aligned_cols=66 Identities=14% Similarity=0.029 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHH---HHHHHHhCCCCcHHHHHHHh
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERR---IEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~---i~~~v~~~pd~tl~El~~~L 75 (77)
..+++.++|+.+|||.+|+..|-+. |-+.|.....+..+.=++.+... |..+. .-++++.|+++.|
T Consensus 3 ~~~tI~evA~~~Gvs~~tLR~ye~~----GLl~p~~r~~~g~R~Y~~~dl~~l~~I~~lr--~~G~sl~~I~~~l 71 (146)
T 3hh0_A 3 LAWLISEFASVGDVTVRALRYYDKI----NLLKPSDYTEGGHRLYTKDDLYVLQQIQSFK--HLGFSLGEIQNII 71 (146)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHT----TSSCCSEECTTSCEEBCHHHHHHHHHHHHHH--HTTCCHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHC----CCCCCCeECCCCCEeeCHHHHHHHHHHHHHH--HcCCCHHHHHHHH
Confidence 4589999999999999999877544 99987643212223344545544 34443 3468888888755
No 88
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.16 E-value=0.0012 Score=39.77 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=38.9
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERRI 56 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~i 56 (77)
..+++..++|+.++||+++|++.+++..+.|-|.-.+...+++. .+|+.-...+
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence 35689999999999999999999999999999976654333332 4566544433
No 89
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=97.15 E-value=6.2e-05 Score=48.74 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=0.0
Q ss_pred CccCCCCHHHHHHHhccCHHHHHHHHHHHHH
Q psy15513 1 MAAAGVRPCVISRQLRVSHGCVSKILNRYQE 31 (77)
Q Consensus 1 l~~~G~s~~~iA~rf~VS~stv~r~~~r~r~ 31 (77)
|..+|+|..+||+.|+||.+|++||++.+.+
T Consensus 154 l~~~G~s~~~Ia~~l~vs~~T~yr~l~~~~~ 184 (193)
T 3plo_X 154 LLAQGIPRKQVALIYDVALSTLYKKHPAKRA 184 (193)
T ss_dssp -------------------------------
T ss_pred HHHCCCCHHHHHHHHCcCHHHHHHHHhhhHH
Confidence 3567999999999999999999999987654
No 90
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=97.14 E-value=0.00087 Score=41.16 Aligned_cols=51 Identities=12% Similarity=0.230 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVER 54 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~ 54 (77)
.|+++.++|+.++|++++|++.+++..+.|-|.-.+...+++. .+|+.-.+
T Consensus 63 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~ 116 (159)
T 3s2w_A 63 DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKK 116 (159)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHH
Confidence 5689999999999999999999999999999977665555543 35554443
No 91
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=97.14 E-value=0.0013 Score=39.68 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVER 54 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~ 54 (77)
.+++..++|+.++||+++|++.+++..+.|-|.-.+...+++. .+|+.-..
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~ 106 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEA 106 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHH
Confidence 4689999999999999999999999999999976655444432 35664433
No 92
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=97.13 E-value=0.0012 Score=39.65 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVER 54 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~ 54 (77)
.|++..++|+.++||+++|++.+++..+.|-|.-.+...+++. .+|+.-..
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~ 95 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKN 95 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHH
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHH
Confidence 4689999999999999999999999999999976655444442 35655443
No 93
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=97.13 E-value=0.00076 Score=37.09 Aligned_cols=29 Identities=10% Similarity=0.033 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHh
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQET 32 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~t 32 (77)
.|+|..+||..+|||.+||..++.+-.+.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRK 57 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999998886643
No 94
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=97.12 E-value=0.00061 Score=40.65 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCC
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSK 44 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~ 44 (77)
.+++..++|+.++||+++|++.+++..+.|-|.-.+...++
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~ 84 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQ 84 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSST
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 46899999999999999999999999999999765543333
No 95
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=97.11 E-value=0.00077 Score=41.06 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERRIEE 58 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~i~~ 58 (77)
.|+++.++|+.++|++++|++.+++..+.|-|.-.+...+++. .+|+.-.+.+.+
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 111 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEA 111 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHH
Confidence 5689999999999999999999999999999977665445442 355554444433
No 96
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=97.11 E-value=0.001 Score=40.36 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERRI 56 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~i 56 (77)
.++++.++|+.++|+++||++.+++..+.|-|.-.+...+++. .+|+.-.+.+
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR 108 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHH
Confidence 3579999999999999999999999999999977665555543 3555544433
No 97
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=97.11 E-value=0.00024 Score=41.67 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=30.9
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
++..++|+.|+||.+||.+-+.++.+.|-+..-
T Consensus 17 vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 17 MEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 899999999999999999999999999998654
No 98
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=97.11 E-value=0.0015 Score=39.45 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCC---CCCCHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKP---RVATPDVER 54 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~---~~~~~~~~~ 54 (77)
.+++..++|+.++||++||++.+++..+.|-|.-.+...+++ -.+|+.-.+
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~ 108 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGER 108 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHH
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHH
Confidence 468999999999999999999999999999997665444443 235555443
No 99
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=97.11 E-value=0.00025 Score=45.34 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=24.7
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHH
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNR 28 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r 28 (77)
..+|+|..+||+.||||.+||++|++.
T Consensus 155 ~~~G~s~~~Ia~~l~is~~tv~r~l~~ 181 (183)
T 1gdt_A 155 WQQGLGASHISKTMNIARSTVYKVINE 181 (183)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred HHCCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 457999999999999999999999974
No 100
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=97.10 E-value=0.0003 Score=42.51 Aligned_cols=51 Identities=6% Similarity=0.078 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVER 54 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~ 54 (77)
.|+++.++|+.++|+++||++.+++..+.|-|.-.+...+++. .+|++-.+
T Consensus 49 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~ 102 (140)
T 3hsr_A 49 EKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKA 102 (140)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHH
Confidence 4689999999999999999999999999999976665445442 35555443
No 101
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=97.10 E-value=0.00029 Score=41.90 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=40.0
Q ss_pred cCCCCHHHHHHHh-ccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHH
Q psy15513 3 AAGVRPCVISRQL-RVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPD 51 (77)
Q Consensus 3 ~~G~s~~~iA~rf-~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~ 51 (77)
+.+++..++|+.+ +||++||++.+++..+.|-|...+...+++. .+|+.
T Consensus 33 ~~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~ 85 (112)
T 1z7u_A 33 QGTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPE 85 (112)
T ss_dssp HSCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHH
T ss_pred hCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHh
Confidence 4568999999999 9999999999999999999987665544442 45664
No 102
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=97.09 E-value=0.0016 Score=41.51 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=41.6
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVER 54 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~ 54 (77)
..|+++.++|+.++||++||++.+++..+.|-|.-.+...+++. .+|+.-.+
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~ 109 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKK 109 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHH
Confidence 35799999999999999999999999999999987666555553 35554333
No 103
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=97.08 E-value=0.00077 Score=39.15 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=28.9
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCC
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v 35 (77)
-.|+|..+||..+|||.+||..++.+.++.=.+
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 479999999999999999999999998865433
No 104
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=97.07 E-value=0.00058 Score=38.27 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHh-----ccCHHHHHHHHHHHHHhcCCCcccc
Q psy15513 4 AGVRPCVISRQL-----RVSHGCVSKILNRYQETGSIRPGVI 40 (77)
Q Consensus 4 ~G~s~~~iA~rf-----~VS~stv~r~~~r~r~tG~v~pk~~ 40 (77)
..++..+|+..| +||.+||+|.++.+.+.|-|.....
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~ 73 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNF 73 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEee
Confidence 358999999999 9999999999999999999975544
No 105
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=97.07 E-value=0.00039 Score=41.05 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=36.6
Q ss_pred ccCCCCHHHHHHHh-ccCHHHHHHHHHHHHHhcCCCccccCCCCC
Q psy15513 2 AAAGVRPCVISRQL-RVSHGCVSKILNRYQETGSIRPGVIGGSKP 45 (77)
Q Consensus 2 ~~~G~s~~~iA~rf-~VS~stv~r~~~r~r~tG~v~pk~~gg~~~ 45 (77)
.+.+++..++|+.+ +||++++++.+++..+.|=|...+...+++
T Consensus 24 ~~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r 68 (107)
T 2hzt_A 24 THGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPP 68 (107)
T ss_dssp TTCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred HhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 34458999999999 999999999999999999997665544433
No 106
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=97.06 E-value=0.00057 Score=41.16 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCC
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKP 45 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~ 45 (77)
.+++..++|+.++||++||++.+++..+.|-|.-.+...+++
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R 94 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDER 94 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTT
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCC
Confidence 458899999999999999999999999999997766544444
No 107
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=97.06 E-value=0.0002 Score=42.42 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=23.1
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNR 28 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r 28 (77)
+.|++..++|+.||||.+||+|++..
T Consensus 18 ~~~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 18 ETKKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHCCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 35689999999999999999999964
No 108
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=97.06 E-value=0.00041 Score=37.08 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=22.9
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+.+|||+++|++|.+
T Consensus 14 ~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 14 ALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4799999999999999999999974
No 109
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=97.06 E-value=0.00042 Score=36.85 Aligned_cols=25 Identities=8% Similarity=0.319 Sum_probs=22.8
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+.+|||+++|++|.+
T Consensus 12 ~~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 12 QLGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4799999999999999999999953
No 110
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=97.05 E-value=0.00057 Score=42.32 Aligned_cols=63 Identities=13% Similarity=0.177 Sum_probs=44.1
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCc-------cccCCCCCC----CCCHHHHHHHHHHHHhCCCCc
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRP-------GVIGGSKPR----VATPDVERRIEEYKGENPAMF 67 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~p-------k~~gg~~~~----~~~~~~~~~i~~~v~~~pd~t 67 (77)
.+|..++|+.+|+|.+||.+.+++..+.|-+.- .+.|-+-.- ...+...+.+.+.+.+.|.++
T Consensus 21 ~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~G~~~~a~v~v~~~~~~~~~~~~~l~~~p~V~ 94 (151)
T 2cyy_A 21 KAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEIV 94 (151)
T ss_dssp TCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCGGGGTCCEEEEEEEEECTTCHHHHHHHHHTCTTEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHHHCCccEEEEEEEEECcccHHHHHHHHhcCCCee
Confidence 489999999999999999999999999998853 333321000 111223455677777777653
No 111
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=97.05 E-value=0.00055 Score=39.26 Aligned_cols=31 Identities=13% Similarity=0.047 Sum_probs=28.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhc
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETG 33 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG 33 (77)
-.|+|..+||..||||.+||..++.+.++.=
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNILSKL 72 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999988654
No 112
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=97.05 E-value=0.00057 Score=43.94 Aligned_cols=24 Identities=4% Similarity=0.029 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNR 28 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r 28 (77)
|.|..+||+.+|||.+|+++|.+.
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHc
Confidence 799999999999999999999995
No 113
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=97.04 E-value=0.0019 Score=39.41 Aligned_cols=53 Identities=11% Similarity=0.103 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERRI 56 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~i 56 (77)
.+++..++|+.++||++||++.+++..+.|-|.-.+...+++. .+|+.-...+
T Consensus 57 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 57 GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence 4689999999999999999999999999999976654444442 3566544433
No 114
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=97.04 E-value=0.00035 Score=38.55 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=35.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCC
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAM 66 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~ 66 (77)
+.|+|..++|+.+|||++||++|-+ |...|. .... .+......+|+.
T Consensus 22 ~~gltq~elA~~~gvs~~tis~~E~-----G~~~p~-----------~~~~-~l~~~l~~~p~~ 68 (73)
T 3fmy_A 22 KLSLTQKEASEIFGGGVNAFSRYEK-----GNAXPH-----------PSTI-KLLRVLDKHPEL 68 (73)
T ss_dssp HTTCCHHHHHHHHCSCTTHHHHHHT-----TSSCCC-----------HHHH-HHHHHHHHCGGG
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc-----CCCCCC-----------HHHH-HHHHHHCCCHHH
Confidence 3699999999999999999999853 543332 2223 577888888864
No 115
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=97.04 E-value=0.00095 Score=38.05 Aligned_cols=30 Identities=7% Similarity=-0.048 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhc
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETG 33 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG 33 (77)
.|+|..+||..+|||.+||..++.+-+..=
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKL 66 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 789999999999999999999999877643
No 116
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=97.03 E-value=0.0014 Score=40.15 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERR 55 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~ 55 (77)
.+++..++|+.++||++||++.+++..+.|-|.-.+...+++. .+|+.-.+.
T Consensus 65 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~ 119 (162)
T 3cjn_A 65 DGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAV 119 (162)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHH
Confidence 4689999999999999999999999999999976554333332 456654443
No 117
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=97.03 E-value=0.0019 Score=39.29 Aligned_cols=53 Identities=9% Similarity=0.060 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCC---CCCCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKP---RVATPDVERRI 56 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~---~~~~~~~~~~i 56 (77)
.+++..++|+.++|++++|++.+++..+.|-|.-.+...+++ -.+|+.-...+
T Consensus 56 ~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 56 DAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence 568999999999999999999999999999997654433333 24566544433
No 118
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=97.02 E-value=0.00077 Score=41.47 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=43.6
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCc-------cccCCCCC---CCC-C--HHHHHHHHHHHHhCCCC
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRP-------GVIGGSKP---RVA-T--PDVERRIEEYKGENPAM 66 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~p-------k~~gg~~~---~~~-~--~~~~~~i~~~v~~~pd~ 66 (77)
.++..++|+.+|||++||++.+++..+.|-+.- .+.|..-. ... . +...+.+.+.+.+.|.+
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~~~~~~~~~~~l~~~p~V 91 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPASLNLDYIVITSVKAKYGKNYHVELGNKLAQIPGV 91 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEECCCTTHHHHHHHHHHTSTTE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHHHhCCceEEEEEEEecCChhHHHHHHHHHhcCchh
Confidence 489999999999999999999999999998863 22332100 000 1 23455677777777765
No 119
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=97.01 E-value=0.0002 Score=40.33 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=22.7
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHH
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
.+.|+|..++|++.|||++||++|.
T Consensus 19 ~~~glT~~~LA~~~Gvs~stls~~~ 43 (74)
T 1neq_A 19 KKRKLSLSALSRQFGYAPTTLANAL 43 (74)
T ss_dssp HTTSCCHHHHHHHHSSCHHHHHHTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3579999999999999999999883
No 120
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=97.01 E-value=0.00072 Score=40.17 Aligned_cols=33 Identities=12% Similarity=0.299 Sum_probs=31.4
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
|.+++|+.|+||.+||.+-++++.+.|-|...+
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 899999999999999999999999999998776
No 121
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=97.00 E-value=0.00096 Score=40.84 Aligned_cols=52 Identities=21% Similarity=0.283 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCC---CCCCHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKP---RVATPDVERR 55 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~---~~~~~~~~~~ 55 (77)
.+++..++|+.++||+++|++.+++..+.|-|.-.+...+++ -.+|+.-...
T Consensus 62 ~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~ 116 (162)
T 2fa5_A 62 PGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQV 116 (162)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHH
Confidence 569999999999999999999999999999997655433333 2355654443
No 122
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=97.00 E-value=0.00051 Score=38.11 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=40.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAMFSWEIRDR 74 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~tl~El~~~ 74 (77)
+.|++..++|+.+|||+++|++|.+ |...| +......|.+.....|+-...+|.+.
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~-----g~~~~-----------~~~~~~~ia~~l~v~~~~l~~~l~~~ 78 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFN-----GINAL-----------NAYNAALLAKILKVSVEEFSPSIARE 78 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHT-----TSSCC-----------CHHHHHHHHHHHTSCGGGTCHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc-----CCCCC-----------CHHHHHHHHHHhCCCHHHHhHHHHhh
Confidence 4689999999999999999999964 43222 12356667777777776665555544
No 123
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=96.99 E-value=0.00094 Score=39.65 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERR 55 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~ 55 (77)
.+++..++|+.++||++||++.+++..+.|-|.-.+...+++. .+|+.-.+.
T Consensus 46 ~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~ 100 (139)
T 3bja_A 46 GKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEET 100 (139)
T ss_dssp CSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHH
T ss_pred CCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHH
Confidence 4689999999999999999999999999999976554444432 356654443
No 124
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=96.99 E-value=0.00094 Score=39.70 Aligned_cols=51 Identities=10% Similarity=0.124 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCC---CCCCHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKP---RVATPDVER 54 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~---~~~~~~~~~ 54 (77)
.+++..++|+.++||++||++.+++..+.|-|.-.+...+++ -.+|+.-..
T Consensus 51 ~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~ 104 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRA 104 (140)
T ss_dssp SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHH
Confidence 468999999999999999999999999999997655443333 245554333
No 125
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=96.98 E-value=0.00077 Score=39.02 Aligned_cols=49 Identities=16% Similarity=0.189 Sum_probs=33.9
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCcH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAMFS 68 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~tl 68 (77)
+.|+|..++|+.+|||+++|++| |+|...|. .. ...|.+....+|+..+
T Consensus 41 ~~glsq~elA~~lgvs~~~is~~-----E~G~~~p~-----------~~-~~~l~~~l~~~~~~l~ 89 (99)
T 2ppx_A 41 ALKLTQEEFSARYHIPLGTLRDW-----EQGRSEPD-----------QP-ARAYLKIIAVDPEGTA 89 (99)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH-----HTTSSCCC-----------HH-HHHHHHHHHHCHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHH-----HcCCCCCC-----------HH-HHHHHHHHCcCHHHHH
Confidence 36899999999999999999999 44543332 11 3446666666655443
No 126
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=96.98 E-value=0.00064 Score=39.44 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=28.9
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCC
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v 35 (77)
..|++..+||..|+||.+||...+++.++.=.+
T Consensus 42 ~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 42 EKGFTNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 479999999999999999999999998765443
No 127
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=96.98 E-value=0.0015 Score=40.25 Aligned_cols=52 Identities=8% Similarity=0.139 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERR 55 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~ 55 (77)
.|+++.++|+.++|++++|++.+++..+.|-|.-.+...+++. .+|++-.+.
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~ 120 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKK 120 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHH
Confidence 4689999999999999999999999999999977665555543 355544443
No 128
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=96.98 E-value=0.00065 Score=41.37 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=32.8
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCC
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG 42 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg 42 (77)
|.+++|+.||||.+||.+-+++..+.|-|...+..|
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G 74 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMG 74 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCE
Confidence 689999999999999999999999999998876544
No 129
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=96.97 E-value=0.00062 Score=38.23 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=23.3
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+++|||+++|++|.+
T Consensus 29 ~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 29 NSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 5799999999999999999999975
No 130
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=96.97 E-value=0.0016 Score=39.48 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVER 54 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~ 54 (77)
.+++..++|+.++||+++|++.+++..+.|-|.-.+...+++. .+|+.-..
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~ 103 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDI 103 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHH
Confidence 4589999999999999999999999999999976654434432 35554333
No 131
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=96.96 E-value=0.0008 Score=38.68 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=40.0
Q ss_pred CCCCHHHH----HHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHH
Q psy15513 4 AGVRPCVI----SRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRI 56 (77)
Q Consensus 4 ~G~s~~~i----A~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i 56 (77)
.+++..++ |+.++||++||++.+++..+.|-+...+.+..+.-.+|+.-.+.+
T Consensus 21 ~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 21 EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFA 77 (99)
T ss_dssp TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHH
Confidence 56899999 999999999999999999999999766544222234666544433
No 132
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=96.96 E-value=0.00077 Score=38.66 Aligned_cols=54 Identities=15% Similarity=0.046 Sum_probs=39.4
Q ss_pred CCCHHHHHHHhccCHHH-HHHHHHHHHHhcCCCccccCCCCC-CCCCHHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGC-VSKILNRYQETGSIRPGVIGGSKP-RVATPDVERRIEE 58 (77)
Q Consensus 5 G~s~~~iA~rf~VS~st-v~r~~~r~r~tG~v~pk~~gg~~~-~~~~~~~~~~i~~ 58 (77)
+++..++|+.++||++| |++.+++..+.|-|.+.+..+... -.+|+.-.+.+..
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~ 85 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAEC 85 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHHH
Confidence 69999999999999999 999999999999998333221111 2456654443333
No 133
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=96.96 E-value=0.0011 Score=39.94 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=26.7
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHh
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQET 32 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~t 32 (77)
-.|+|..+||..+|||.+||.+++.+.+..
T Consensus 39 ~~g~s~~EIA~~lgiS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 39 LEDYSLSEIADTFNVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 479999999999999999999998886643
No 134
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=96.96 E-value=0.00076 Score=38.48 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcccc
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI 40 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~ 40 (77)
.+++..++|+.++||++||++.+++..+.|-|...+.
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEee
Confidence 4689999999999999999999999999999976543
No 135
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=96.96 E-value=0.00047 Score=41.04 Aligned_cols=41 Identities=20% Similarity=0.377 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCC
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSK 44 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~ 44 (77)
.+++..++|+.++||++||++.+++..+.|-|.-.+...++
T Consensus 42 ~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~ 82 (138)
T 3bpv_A 42 PGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENR 82 (138)
T ss_dssp TTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCc
Confidence 56899999999999999999999999999999765544333
No 136
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=96.96 E-value=0.00071 Score=40.46 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=32.6
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCC
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG 42 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg 42 (77)
|.+++|++||||.+||.+-+++..+.|-+...+..|
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~~G 70 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRGLG 70 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCe
Confidence 789999999999999999999999999998776444
No 137
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=96.95 E-value=0.0017 Score=39.15 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
.+++..++|++|+||++||++.+++..+.|-|.-.+
T Consensus 30 ~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 30 EGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 468999999999999999999999999999887554
No 138
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=96.95 E-value=0.00061 Score=41.46 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCC
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKP 45 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~ 45 (77)
.+++..++|+.++||++||++.+++..+.|-|.-.+...+++
T Consensus 60 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R 101 (153)
T 2pex_A 60 DERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDER 101 (153)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC------
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccCC
Confidence 468999999999999999999999999999997665443433
No 139
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=96.95 E-value=0.0011 Score=40.18 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=26.1
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQE 31 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~ 31 (77)
-.|+|..+||+.||||.+||.+++.+.+.
T Consensus 122 ~~g~s~~EIA~~lgis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 122 IRGYSYREIATILSKNLKSIDNTIQRIRK 150 (164)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999888654
No 140
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=96.95 E-value=0.00091 Score=40.63 Aligned_cols=53 Identities=9% Similarity=0.106 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCc--cccCCCCCC---CCCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP--GVIGGSKPR---VATPDVERRI 56 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~p--k~~gg~~~~---~~~~~~~~~i 56 (77)
.++++.++|+.++||++||++.+++..+.|-|.- .+...+++. .+|+.-...+
T Consensus 54 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 54 PGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence 4589999999999999999999999999999977 555444442 4566544433
No 141
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=96.94 E-value=0.00074 Score=37.42 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.4
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNR 28 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r 28 (77)
+.| |..++|+++|||+++|++|.+-
T Consensus 10 ~~g-sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 10 KLG-SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp HHS-SHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhC-CHHHHHHHHCCCHHHHHHHHHC
Confidence 358 9999999999999999999763
No 142
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=96.94 E-value=0.00065 Score=41.84 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=30.3
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCC
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~ 36 (77)
.+|..++|+.+|+|.+||.+.+++..+.|-+.
T Consensus 19 ~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 50 (144)
T 2cfx_A 19 RLSMRELGRKIKLSPPSVTERVRQLESFGIIK 50 (144)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 48999999999999999999999999999885
No 143
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=96.94 E-value=0.00067 Score=35.85 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.6
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+.+|||++++++|.+
T Consensus 16 ~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 16 KLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 3689999999999999999999963
No 144
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=96.92 E-value=0.0013 Score=40.42 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=38.6
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVER 54 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~ 54 (77)
++++.++|+.++|++++|++.+++..+.|-|.-.+...+++. .+|+.-.+
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~ 103 (147)
T 4b8x_A 51 ELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGRE 103 (147)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHH
Confidence 489999999999999999999999999999987776666653 35664333
No 145
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=96.92 E-value=0.00059 Score=40.38 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=29.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCC
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v 35 (77)
..|++..+||..++||.+||..++.+.++.=.+
T Consensus 47 ~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 47 AEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 479999999999999999999999998875444
No 146
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=96.92 E-value=0.0011 Score=41.80 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=31.0
Q ss_pred cCC-CCHHHHHHHhccCHHHHHHHHHHHHHhcCCC
Q psy15513 3 AAG-VRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (77)
Q Consensus 3 ~~G-~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~ 36 (77)
++| +|..++|+++|+|.+||.+-+++..+.|-+.
T Consensus 14 ~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 14 EDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp TCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSC
T ss_pred HCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence 344 8999999999999999999999999999875
No 147
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=96.91 E-value=0.00071 Score=42.30 Aligned_cols=42 Identities=7% Similarity=0.245 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCC
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKP 45 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~ 45 (77)
.|++..++|+.++|++++|++.+++..+.|-|.-.+...+++
T Consensus 67 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR 108 (166)
T 3deu_A 67 PDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRR 108 (166)
T ss_dssp SSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-------
T ss_pred CCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCC
Confidence 569999999999999999999999999999997665544444
No 148
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=96.91 E-value=0.0061 Score=38.19 Aligned_cols=65 Identities=9% Similarity=-0.024 Sum_probs=43.4
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHH---HHHHHHhCCCCcHHHHHHHh
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERR---IEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~---i~~~v~~~pd~tl~El~~~L 75 (77)
-+++.++|+.+|||.+|+..|- +.|-+.|-....+..+.=++.+... |..+ .+-++++.||++.|
T Consensus 16 ~~~I~evA~~~gvs~~tLR~Ye----~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~l--r~~G~sL~eIk~~l 83 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYYD----KQGLFPFLQRNEKGDRIFNEEALKYLEMILCL--KNTGMPIQKIKQFI 83 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHH----HTTCCTTCEECTTCCEEBCHHHHHHHHHHHHH--HTTTCCHHHHHHHH
T ss_pred ceeHHHHHHHHCcCHHHHHHHH----HCCCCCCCcCCCCCCeecCHHHHHHHHHHHHH--HHcCCCHHHHHHHH
Confidence 4789999999999999998774 4588865333222223344444443 4444 44579999998765
No 149
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=96.90 E-value=0.0021 Score=39.93 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVER 54 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~ 54 (77)
.+++..++|+.++||++||++.+++..+.|-|.-.+...+++. .+|+.-..
T Consensus 58 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~ 111 (168)
T 2nyx_A 58 GPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRD 111 (168)
T ss_dssp CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHH
Confidence 4689999999999999999999999999999976655444442 45554333
No 150
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=96.90 E-value=0.0023 Score=40.51 Aligned_cols=65 Identities=11% Similarity=0.024 Sum_probs=43.2
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcccc-CCCCC-CCCCHHHHHHHHHHHHhCCCCcHHHHHHHh
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI-GGSKP-RVATPDVERRIEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~-gg~~~-~~~~~~~~~~i~~~v~~~pd~tl~El~~~L 75 (77)
-+++.++|+.+|||..|+..|-+ .|-+.|... +|.|. +...-....+|..+.+. ++++.||++.|
T Consensus 11 ~~~i~e~A~~~gvs~~TLR~ye~----~Gll~p~r~~~g~R~Y~~~dl~~l~~I~~lr~~--G~sl~eI~~~l 77 (154)
T 2zhg_A 11 LLTPGEVAKRSGVAVSALHFYES----KGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRI--GIPLATIGEAF 77 (154)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHH----TTSSCCEECTTSCEEBCTTHHHHHHHHHHHHHH--TCCHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH----cCCCCcccCCCCCEEeCHHHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence 48999999999999999987754 488877643 44332 22222223455555443 68888887655
No 151
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=96.90 E-value=0.00072 Score=41.75 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=30.3
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCC
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~ 36 (77)
.++..++|+++|+|.+||++.+++..+.|-+.
T Consensus 21 ~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 52 (150)
T 2w25_A 21 RATLSELATRAGLSVSAVQSRVRRLESRGVVQ 52 (150)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 48999999999999999999999999999984
No 152
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=96.90 E-value=0.00069 Score=36.71 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.9
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|++..++|+.+|||++++++|.+
T Consensus 21 ~~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 21 EKQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4799999999999999999999974
No 153
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=96.90 E-value=0.0007 Score=36.42 Aligned_cols=25 Identities=12% Similarity=0.124 Sum_probs=22.8
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+.+|||++++++|.+
T Consensus 24 ~~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4799999999999999999999863
No 154
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=96.89 E-value=0.00077 Score=41.71 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=43.3
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCC-------ccccCCCCC---CCC--CHHHHHHHHHHHHhCCCC
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR-------PGVIGGSKP---RVA--TPDVERRIEEYKGENPAM 66 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~-------pk~~gg~~~---~~~--~~~~~~~i~~~v~~~pd~ 66 (77)
.+|..++|+.+|+|.+||.+.+++..+.|-+. |.+.|-+-. ... .....+.+.+.+.+.|.+
T Consensus 22 ~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~~~~~~~~~~~~l~~~peV 95 (152)
T 2cg4_A 22 RTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALAKLESLDEV 95 (152)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTTTTTCCEEEEEEEEESSGGGHHHHHHHHHTCTTE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHHHcCCeEEEEEEEEECCCCCHHHHHHHHhCCcCe
Confidence 48999999999999999999999999999885 343342200 111 111245567777777764
No 155
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=96.89 E-value=0.00074 Score=42.26 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=30.2
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCC
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~ 36 (77)
.+|..++|+.+|+|.+||.+.+++..+.|-+.
T Consensus 24 ~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 55 (162)
T 2p5v_A 24 RLTNVELSERVALSPSPCLRRLKQLEDAGIVR 55 (162)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 38999999999999999999999999999885
No 156
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=96.88 E-value=0.00083 Score=38.66 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=29.4
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCC
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v 35 (77)
+++.++|+.++|+++||++++++..+.|-|
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 899999999999999999999999999999
No 157
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=96.88 E-value=0.00057 Score=37.09 Aligned_cols=28 Identities=0% Similarity=-0.013 Sum_probs=24.3
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQ 30 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r 30 (77)
..|....++|+.||||.+|+++++++|.
T Consensus 30 ~~~gn~~~aA~~LGisr~tL~rklkk~g 57 (63)
T 3e7l_A 30 EYDYDLKRTAEEIGIDLSNLYRKIKSLN 57 (63)
T ss_dssp HTTTCHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred HhCCCHHHHHHHHCcCHHHHHHHHHHhC
Confidence 3456788999999999999999999873
No 158
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=96.88 E-value=0.00075 Score=40.89 Aligned_cols=33 Identities=12% Similarity=0.310 Sum_probs=31.0
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
++..+||+.+++|.+||+|.++++.+.|-|...
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 799999999999999999999999999999654
No 159
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=96.87 E-value=0.00074 Score=36.68 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=22.9
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+.+|||++++++|.+
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 21 QKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 4699999999999999999999974
No 160
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=96.87 E-value=0.00078 Score=36.58 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=23.1
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+.+|||++|+++|.+
T Consensus 19 ~~glsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 19 EKGKTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4689999999999999999999975
No 161
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=96.87 E-value=0.0011 Score=40.17 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
.+++..++|+.|+||++||++.+++..+.|-|.-.+
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEee
Confidence 569999999999999999999999999999997653
No 162
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=96.85 E-value=0.00099 Score=42.56 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=43.1
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCc-------cccCCCCCC----CCCHHHHHHHHHHHHhCCCC
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRP-------GVIGGSKPR----VATPDVERRIEEYKGENPAM 66 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~p-------k~~gg~~~~----~~~~~~~~~i~~~v~~~pd~ 66 (77)
.++..++|+.+|+|.+||.+.++++.+.|-+.- .+.|-.-.- ...+...+.+.+.+.+.|.+
T Consensus 41 ~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~~~G~~~~a~v~v~~~~~~~~~v~~~l~~~peV 113 (171)
T 2e1c_A 41 KAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKYPEI 113 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEECTTCHHHHHHHHHTSTTE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHHHcCCCEEEEEEEEECcchHHHHHHHHhcCcCe
Confidence 389999999999999999999999999998853 333321000 01122345566777777764
No 163
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=96.84 E-value=0.00045 Score=45.03 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=25.0
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHHH
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNRY 29 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r~ 29 (77)
+.+|+|..+||+.||||.+||+||++..
T Consensus 172 ~~~G~s~~~Ia~~l~is~~tv~r~l~~~ 199 (209)
T 2r0q_C 172 LEEGQAISKIAKEVNITRQTVYRIKHDN 199 (209)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHhcc
Confidence 3579999999999999999999998753
No 164
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=96.83 E-value=0.0013 Score=39.72 Aligned_cols=35 Identities=9% Similarity=0.134 Sum_probs=31.6
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
.++..+||++++||+++|.++++..++.|=|...+
T Consensus 26 ~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~ 60 (129)
T 2y75_A 26 PTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIR 60 (129)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred cCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecC
Confidence 38999999999999999999999999999987653
No 165
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=96.83 E-value=0.0019 Score=39.18 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=32.7
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCc
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~p 37 (77)
..|+++.++|+.++||+++|++.+++..+.|-|.-
T Consensus 49 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 49 IEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC
T ss_pred cCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 35799999999999999999999999999999975
No 166
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=96.82 E-value=0.00059 Score=40.18 Aligned_cols=50 Identities=18% Similarity=0.115 Sum_probs=39.4
Q ss_pred ccCCCCHHHHHHHh-ccCHHHHHHHHHHHHHhcCCCccccCCCCC---CCCCHH
Q psy15513 2 AAAGVRPCVISRQL-RVSHGCVSKILNRYQETGSIRPGVIGGSKP---RVATPD 51 (77)
Q Consensus 2 ~~~G~s~~~iA~rf-~VS~stv~r~~~r~r~tG~v~pk~~gg~~~---~~~~~~ 51 (77)
.+.+++..++|+.+ |||++++++.+++..+.|-|.-.+...+++ -.+|+.
T Consensus 35 ~~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~ 88 (107)
T 2fsw_A 35 NRRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPL 88 (107)
T ss_dssp TTSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHH
T ss_pred HhCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECcc
Confidence 34458999999999 599999999999999999997665544444 255664
No 167
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.82 E-value=0.0016 Score=39.02 Aligned_cols=53 Identities=23% Similarity=0.233 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCC---CCCCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKP---RVATPDVERRI 56 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~---~~~~~~~~~~i 56 (77)
.+++..++|+.++||+++|++.+++..+.|-|.-.+...+++ -.+|+.-...+
T Consensus 46 ~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 46 GPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence 468999999999999999999999999999997665433333 24566544433
No 168
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=96.81 E-value=0.0011 Score=36.87 Aligned_cols=25 Identities=12% Similarity=0.318 Sum_probs=23.2
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+.+|||+++|++|.+
T Consensus 23 ~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 23 QNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4699999999999999999999976
No 169
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=96.81 E-value=0.00097 Score=38.10 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=22.9
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+++|||.++|++|.+
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 4799999999999999999999964
No 170
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=96.80 E-value=0.00099 Score=35.99 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.7
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+.+|||++++++|.+
T Consensus 16 ~~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 16 KLKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4689999999999999999999964
No 171
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=96.78 E-value=0.0012 Score=35.93 Aligned_cols=25 Identities=4% Similarity=0.116 Sum_probs=23.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+.+|||++++++|.+
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4799999999999999999999974
No 172
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=96.78 E-value=0.00079 Score=41.66 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=25.2
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHHHHHhc
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQETG 33 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG 33 (77)
...|+|.++||+.+|||.+||+|.-+ .-..|
T Consensus 72 L~~G~syreIA~~~g~S~aTIsRv~r-~L~~g 102 (119)
T 3kor_A 72 IKQGYTYATIEQESGASTATISRVKR-SLQWG 102 (119)
T ss_dssp HHHTCCHHHHHHHHCCCHHHHHHHHH-HHHSS
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHH-HHhcC
Confidence 35789999999999999999999544 44444
No 173
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.78 E-value=0.0012 Score=39.34 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCC---CCCCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKP---RVATPDVERRI 56 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~---~~~~~~~~~~i 56 (77)
.+++..++|+.++||+++|++.+++..+.|-|.-.+...+++ -.+|+.-.+.+
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence 468999999999999999999999999999997655433333 24566544433
No 174
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=96.78 E-value=0.00048 Score=42.89 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=25.7
Q ss_pred cCCCCHHHHHHHhcc-CHHHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRV-SHGCVSKILNRYQ 30 (77)
Q Consensus 3 ~~G~s~~~iA~rf~V-S~stv~r~~~r~r 30 (77)
..|+|.++||+.+|| |.+|+++|+++.-
T Consensus 26 ~~G~sl~~i~~~~~~ps~~T~~~W~~~~~ 54 (140)
T 4dyq_A 26 SSGESLLKVCKRPGMPDKSTVFRWLAKHE 54 (140)
T ss_dssp HTTCCHHHHHTSTTCCCHHHHHHHHHHCH
T ss_pred HCCCcHHHHHhcCCCCCHHHHHHHHHcCH
Confidence 479999999999999 9999999999854
No 175
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=96.77 E-value=0.00097 Score=37.10 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=22.8
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+++|||.++|++|.+
T Consensus 21 ~~gltq~elA~~~gis~~~is~~E~ 45 (78)
T 3qq6_A 21 EKGYSLSELAEKAGVAKSYLSSIER 45 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4799999999999999999999864
No 176
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=96.77 E-value=0.0012 Score=40.33 Aligned_cols=36 Identities=17% Similarity=0.084 Sum_probs=32.8
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCC
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG 42 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg 42 (77)
|.+++|++||||.+||.+-+++....|-|...+..|
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G 72 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKELEAQKVIRTIPGKG 72 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCe
Confidence 889999999999999999999999999998776544
No 177
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=96.76 E-value=0.0014 Score=40.28 Aligned_cols=36 Identities=28% Similarity=0.303 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
.+.+..++|+.|+||++||++.+++..+.|-|.-.+
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~ 88 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIP 88 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEET
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEec
Confidence 458999999999999999999999999999886553
No 178
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=96.75 E-value=0.006 Score=37.56 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=33.2
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERR 55 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~ 55 (77)
++++.++|++++|+++||++.+++..+.|-|.- +...+++. .+|++-.+.
T Consensus 52 ~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~-~~~~DrR~~~v~LT~~G~~~ 104 (148)
T 4fx0_A 52 DLTMSELAARIGVERTTLTRNLEVMRRDGLVRV-MAGADARCKRIELTAKGRAA 104 (148)
T ss_dssp --CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC------------CCBCHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEe-eCCCCCCeeEEEECHHHHHH
Confidence 489999999999999999999999999998843 33445442 455654443
No 179
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=96.74 E-value=0.00066 Score=40.74 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVER 54 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~ 54 (77)
.+++..++|+.++||++||++.+++..+.|-|.-.+...+++. .+|+.-..
T Consensus 50 ~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~ 103 (142)
T 2bv6_A 50 SPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSET 103 (142)
T ss_dssp SEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHH
Confidence 4589999999999999999999999999999976655434432 34554433
No 180
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=96.73 E-value=0.0012 Score=37.38 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=22.1
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+.|+|..++|+++|||+++|++|-
T Consensus 25 ~~gltq~elA~~~gis~~~is~~E 48 (86)
T 3eus_A 25 DAGLTQADLAERLDKPQSFVAKVE 48 (86)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHH
Confidence 479999999999999999999984
No 181
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=96.73 E-value=0.0014 Score=36.34 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=20.0
Q ss_pred CHHHHHHHhccCHHHHHHHHH
Q psy15513 7 RPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~ 27 (77)
|..++|+.||||+++|++|++
T Consensus 15 s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 889999999999999999985
No 182
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=96.72 E-value=0.0011 Score=36.52 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.8
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|++..++|+.+|||++++++|.+
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 21 EASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4699999999999999999999864
No 183
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=96.69 E-value=0.0013 Score=40.12 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERR 55 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~ 55 (77)
.|++..++|+.++|+++||++.+++..+.|-|.-.+...+++. .+|+.-...
T Consensus 61 ~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~ 115 (160)
T 3boq_A 61 DGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTT 115 (160)
T ss_dssp TCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHH
T ss_pred CCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHH
Confidence 5789999999999999999999999999999976654444432 355554443
No 184
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=96.69 E-value=0.0025 Score=39.66 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=32.1
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc-cCC
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV-IGG 42 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~-~gg 42 (77)
++..+||++++||.+++.++++..++.|=|...+ .||
T Consensus 31 ~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG~GG 68 (149)
T 1ylf_A 31 CTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGPGG 68 (149)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---CC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccCCCc
Confidence 8999999999999999999999999999987654 344
No 185
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=96.69 E-value=0.0013 Score=36.10 Aligned_cols=25 Identities=8% Similarity=0.161 Sum_probs=22.6
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+++|||.++|++|.+
T Consensus 13 ~~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 13 RLSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4689999999999999999999863
No 186
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=96.69 E-value=0.0015 Score=40.00 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=32.6
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCC
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG 42 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg 42 (77)
|.+++|+.||||.+||.+-+++....|-|..++..|
T Consensus 40 ser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g~G 75 (134)
T 4ham_A 40 SIREFASRIGVNPNTVSKAYQELERQEVIITVKGKG 75 (134)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCcE
Confidence 779999999999999999999999999998776544
No 187
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=96.67 E-value=0.0049 Score=41.66 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.4
Q ss_pred CCHHHHHHHhccCHHHHHHHHH
Q psy15513 6 VRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~ 27 (77)
++..+||+++|||.+||||-++
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn 22 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVIN 22 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 3678999999999999999998
No 188
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=96.67 E-value=0.0048 Score=37.66 Aligned_cols=72 Identities=17% Similarity=0.006 Sum_probs=56.3
Q ss_pred CccCCCCHHHHHHHhccCHHHHHHHHHHHHHhcC-CCccccCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHHHHHh
Q psy15513 1 MAAAGVRPCVISRQLRVSHGCVSKILNRYQETGS-IRPGVIGGSKPRVATPDVERRIEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 1 l~~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~-v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~tl~El~~~L 75 (77)
|++.|++..+||..-|++.+||..-+..+...|. +.--.- -+....++..+.|.+.+.+.++..|..+.+.|
T Consensus 28 l~~~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~i~~~---i~~~l~~~~~~~I~~~~~~~~~~~Lk~i~e~l 100 (122)
T 3iuo_A 28 QIDRKVALDDIAVSHGLDFPELLSEVETIVYSGTRINIDYF---INEVMDEDHLEDIFEYFKESTTDSLEEAMQEL 100 (122)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCCCHHH---HHHHSCHHHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHH---cccccCHHHHHHHHHHHHHcCcccHHHHHHHc
Confidence 4679999999999999999999999999999995 432210 01133356677888988888888888888776
No 189
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=96.66 E-value=0.00081 Score=38.98 Aligned_cols=27 Identities=11% Similarity=0.008 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQ 30 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r 30 (77)
.|....++|+.||||.+|+++++++|.
T Consensus 63 ~~gn~~~aA~~LGIsr~tL~rklkk~~ 89 (91)
T 1ntc_A 63 TQGHKQEAARLLGWGAATLTAKLKELG 89 (91)
T ss_dssp TTTCTTHHHHHTTCCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHCcCHHHHHHHHHHhC
Confidence 455777899999999999999999984
No 190
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=96.65 E-value=0.00034 Score=40.90 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=32.4
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCC
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG 42 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg 42 (77)
|.+++|+.|+||.+||.+-++++.+.|-|...+..|
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~g~G 72 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGALG 72 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTTE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCe
Confidence 899999999999999999999999999997765443
No 191
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=96.65 E-value=0.0018 Score=36.81 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=23.1
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+++|||+++|++|.+
T Consensus 19 ~~gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 19 ELNVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4689999999999999999999986
No 192
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=96.65 E-value=0.003 Score=41.49 Aligned_cols=52 Identities=10% Similarity=0.072 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEE 58 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~ 58 (77)
.+++..++|++|+||++||++.+++..+.|-|.-.+.+ .=.+|+.-.+...+
T Consensus 19 ~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~~---~i~LT~~G~~~~~~ 70 (214)
T 3hrs_A 19 NKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKKA---GYLLTDLGLKLVSD 70 (214)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT---EEEECHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecCC---CeEECHHHHHHHHH
Confidence 45999999999999999999999999999999766532 22455544443333
No 193
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=96.65 E-value=0.0014 Score=41.78 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=30.2
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCC
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~ 36 (77)
.+|..++|+.+|||.+||.+.+++..+.|-+.
T Consensus 31 ~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~ 62 (171)
T 2ia0_A 31 RLTISELSEQLKKPESTIHFRIKKLQERGVIE 62 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 48999999999999999999999999999884
No 194
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=96.64 E-value=0.0034 Score=38.02 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=30.3
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCC
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~ 36 (77)
.+|..++|+.||||.+||.+.+++..+.|-+.
T Consensus 18 ~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 18 RTPFTEIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 48999999999999999999999999999885
No 195
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=96.64 E-value=0.0026 Score=39.13 Aligned_cols=62 Identities=10% Similarity=0.121 Sum_probs=45.0
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCC-------ccccCCCCC---C-CCCHHHHHHHHHHHHhCCCC
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIR-------PGVIGGSKP---R-VATPDVERRIEEYKGENPAM 66 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~-------pk~~gg~~~---~-~~~~~~~~~i~~~v~~~pd~ 66 (77)
.+|..++|+.+|+|.+||.+.+++..+.|-+. |.+.|-+-. . ...+...+.+.+.+.+.|.+
T Consensus 23 ~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~~~~~~~~~~~l~~~peV 95 (151)
T 2dbb_A 23 RLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDIDKLGYMYAIVLIKSKVPSDADKVISEISDIEYV 95 (151)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTGGGTEEEEEEEEEESSHHHHHHHHHHHTTCTTE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChHHhCCCEEEEEEEEeCCCCHHHHHHHHHcCCCe
Confidence 48999999999999999999999999999885 443332100 0 12344456677777777764
No 196
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=96.64 E-value=0.0015 Score=40.12 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=32.6
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCC
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG 42 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg 42 (77)
|.+++|++||||.+||.+-+++....|-|...+..|
T Consensus 30 se~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g~G 65 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTLLVEAGILYKKRGIG 65 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTTE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCCE
Confidence 789999999999999999999999999998776443
No 197
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=96.63 E-value=0.0017 Score=35.94 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=22.6
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+++|||+++|++|.+
T Consensus 25 ~~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 25 AAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3689999999999999999999953
No 198
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=96.62 E-value=0.0025 Score=37.30 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
.|++++++|++++++++||.++++++.+.|-|...+
T Consensus 35 ~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 35 KGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVK 70 (91)
T ss_dssp TCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 589999999999999999999999999999997444
No 199
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=96.61 E-value=0.0018 Score=38.04 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=23.5
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
...|+|..++|+.+|||+++|++|.+
T Consensus 21 ~~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 21 EPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35799999999999999999999965
No 200
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=96.61 E-value=0.0013 Score=40.48 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=39.9
Q ss_pred ccCCCCHHHHHHHh-ccCHHHHHHHHHHHHHhcCCCccccCCCCC---CCCCHH
Q psy15513 2 AAAGVRPCVISRQL-RVSHGCVSKILNRYQETGSIRPGVIGGSKP---RVATPD 51 (77)
Q Consensus 2 ~~~G~s~~~iA~rf-~VS~stv~r~~~r~r~tG~v~pk~~gg~~~---~~~~~~ 51 (77)
...+++..++|+.+ |||++++++.+++..+.|=|.-.+...+++ -.+|+.
T Consensus 45 ~~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~ 98 (131)
T 1yyv_A 45 RDGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPL 98 (131)
T ss_dssp GGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHH
T ss_pred HcCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECcc
Confidence 44458999999999 799999999999999999998666544444 256664
No 201
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=96.59 E-value=0.0019 Score=38.77 Aligned_cols=50 Identities=10% Similarity=0.171 Sum_probs=39.1
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHHH
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERRI 56 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~i 56 (77)
++.++|+.++||+++|++.+++..+.|-|.-.+...+++. .+|++-...+
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHH
Confidence 8999999999999999999999999999976665544432 4556544433
No 202
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=96.58 E-value=0.0018 Score=35.80 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=22.6
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+++|||++++++|.+
T Consensus 22 ~~glsq~~lA~~~gis~~~i~~~e~ 46 (82)
T 3s8q_A 22 EKGMTQEDLAYKSNLDRTYISGIER 46 (82)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 4799999999999999999999853
No 203
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=96.57 E-value=0.0032 Score=42.56 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
.+++..++|+.+++|++||+|.+++..+.|-+.-.
T Consensus 165 ~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 165 KGTGITELAKMLDKSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 57999999999999999999999999999999765
No 204
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=96.56 E-value=0.0029 Score=39.56 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=26.5
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQE 31 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~ 31 (77)
-.|+|..+||..+|||.+||.+++.+-+.
T Consensus 154 ~~g~s~~EIA~~lgis~~tV~~~l~ra~~ 182 (194)
T 1or7_A 154 LDGLSYEEIAAIMDCPVGTVRSRIFRARE 182 (194)
T ss_dssp TTCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 37999999999999999999999998765
No 205
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=96.56 E-value=0.0016 Score=37.65 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=23.1
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|++..++|+++|||++|+++|.+
T Consensus 35 ~~glTq~eLA~~~GiS~~tis~iE~ 59 (88)
T 3t76_A 35 DRDMKKGELREAVGVSKSTFAKLGK 59 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 5799999999999999999999875
No 206
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=96.56 E-value=0.0018 Score=39.41 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=26.0
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHHHHH
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQE 31 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r~r~ 31 (77)
...|+|.++||+..|+|.+||+|.-+-+..
T Consensus 55 L~~G~SyreIa~~tG~StaTIsRv~r~L~~ 84 (107)
T 3frw_A 55 LTDKRTYLDISEKTGASTATISRVNRSLNY 84 (107)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCccHHHHHHHHHHHHc
Confidence 457999999999999999999998776553
No 207
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=96.56 E-value=0.0023 Score=34.16 Aligned_cols=25 Identities=8% Similarity=-0.003 Sum_probs=22.9
Q ss_pred cCCCCHHHHHHHhc--cCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLR--VSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~--VS~stv~r~~~ 27 (77)
+.|+|..++|+.+| ||++++++|.+
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 46999999999999 99999999875
No 208
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=96.53 E-value=0.0048 Score=41.02 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCC
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAM 66 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~ 66 (77)
..++.+++|++++||.+||+..+++..+.|-|.-.+ + .-.+|++=.+...++...+.++
T Consensus 29 ~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~~~-~---Gv~LTe~G~~~A~~i~~rhr~~ 87 (200)
T 2p8t_A 29 EPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQ-R---GHFLTLKGKEIRDKLLSMFSEP 87 (200)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC------CEEECHHHHHHHHHHHTTBCCC
T ss_pred CCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeC-C---CeEECHHHHHHHHHHHHHHHHh
Confidence 458899999999999999999999999999997776 3 2457777666666777666544
No 209
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=96.52 E-value=0.002 Score=45.44 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCc
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~p 37 (77)
..+|..++|+.+++|++||+++++++.+.|-+..
T Consensus 29 ~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 29 GPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp CSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 3489999999999999999999999999998855
No 210
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=96.51 E-value=0.0019 Score=36.32 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=37.6
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAMFSWEIR 72 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~tl~El~ 72 (77)
+.|+|..++|+.+|||++++++|.+ |.. .| +......|.+.....++..+.+.-
T Consensus 28 ~~glsq~~lA~~~gis~~~is~~e~-----g~~--------~~---~~~~l~~ia~~l~v~~~~l~~~~~ 81 (92)
T 1lmb_3 28 ELGLSQESVADKMGMGQSGVGALFN-----GIN--------AL---NAYNAALLAKILKVSVEEFSPSIA 81 (92)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT-----TSS--------CC---CHHHHHHHHHHHTSCGGGTCHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc-----CCC--------CC---CHHHHHHHHHHHCCCHHHHhhhhh
Confidence 4699999999999999999999975 321 11 233455566777666666655443
No 211
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=96.50 E-value=0.0031 Score=39.03 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=26.8
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHh
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQET 32 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~t 32 (77)
-.|+|..+||..+|||.+||...+.|-+..
T Consensus 107 ~~g~s~~EIA~~lgis~~tV~~~l~rar~~ 136 (157)
T 2lfw_A 107 MEGFSPEDAAYLIEVDTSEVETLVTEALAE 136 (157)
T ss_dssp SSCCCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 479999999999999999999999887654
No 212
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=96.49 E-value=0.002 Score=40.56 Aligned_cols=51 Identities=24% Similarity=0.206 Sum_probs=37.1
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCC---CCCCHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKP---RVATPDVERR 55 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~---~~~~~~~~~~ 55 (77)
|+++.++|+.++||++||++.+++..+.|-|.-.+...+++ -.+|+.-...
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~ 139 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRAL 139 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHH
Confidence 48999999999999999999999999999997665443443 2355654443
No 213
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=96.49 E-value=0.0029 Score=35.69 Aligned_cols=25 Identities=4% Similarity=0.129 Sum_probs=23.1
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|++..++|+.+|||+++|++|.+
T Consensus 24 ~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 24 SKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4799999999999999999999975
No 214
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=96.49 E-value=0.0049 Score=40.03 Aligned_cols=60 Identities=13% Similarity=0.007 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHHHHHHHHhC
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERRIEEYKGEN 63 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~i~~~v~~~ 63 (77)
.|+++.++|+.++|+++||++.+++..+.|-|.-.+...+++. .+|+.-...+..+....
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~ 123 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEEF 123 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999977665555542 46676555555555443
No 215
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=96.47 E-value=0.0022 Score=37.98 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=23.1
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+++|||+++|++|.+
T Consensus 25 ~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 25 LDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp TTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 5799999999999999999999974
No 216
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=96.47 E-value=0.0019 Score=37.38 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=23.1
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
..|+|..++|+.+|||++++++|.+
T Consensus 12 ~~gltq~~lA~~~gis~~~i~~~e~ 36 (111)
T 1b0n_A 12 EKGYSLSELAEKAGVAKSYLSSIER 36 (111)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4799999999999999999999975
No 217
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.46 E-value=0.00046 Score=43.21 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=0.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCc
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~p 37 (77)
+.|+|..++|+++|||++||++| ++|...|
T Consensus 12 ~~gltq~elA~~lgis~~~vs~~-----e~G~~~~ 41 (158)
T 2p5t_A 12 THDLTQLEFARIVGISRNSLSRY-----ENGTSSV 41 (158)
T ss_dssp -----------------------------------
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH-----HCCCCCC
Confidence 47899999999999999999999 5565543
No 218
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=96.46 E-value=0.0015 Score=40.56 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERRIE 57 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~i~ 57 (77)
.|+++.++|+.++|++++|++.+++..+.|-|.-.+...+++. .+|+.-.+.+.
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLK 117 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHH
Confidence 4799999999999999999999999999999987665555542 45565444333
No 219
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=96.46 E-value=0.0011 Score=38.25 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=23.5
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRY 29 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~ 29 (77)
+.|-...++|+.||||.+|+++++++|
T Consensus 52 ~~~GN~s~AA~~LGISR~TLyrKLkk~ 78 (81)
T 1umq_A 52 MCDRNVSETARRLNMHRRTLQRILAKR 78 (81)
T ss_dssp HTTSCHHHHHHHHTSCHHHHHHHHHTS
T ss_pred HhCCCHHHHHHHhCCCHHHHHHHHHHh
Confidence 345578899999999999999999986
No 220
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=96.44 E-value=0.002 Score=41.05 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=31.6
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
+|..+||++++||++++.|++++.++.|=|...+
T Consensus 29 ~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~r 62 (162)
T 3k69_A 29 VASRELAQSLHLNPVMIRNILSVLHKHGYLTGTV 62 (162)
T ss_dssp BCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEEC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeec
Confidence 7899999999999999999999999999996654
No 221
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=96.43 E-value=0.0028 Score=39.38 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=38.3
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCC--CCCCHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKP--RVATPD 51 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~--~~~~~~ 51 (77)
..+++..++++.++||++++++.+++..+.|-|.-.+...++. -.+|+.
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~ 85 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDK 85 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHH
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECch
Confidence 3459999999999999999999999999999997665433221 245654
No 222
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=96.42 E-value=0.0024 Score=36.37 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=22.7
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|++..++|+++|||+++|++|.+
T Consensus 15 ~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 15 SEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4699999999999999999999864
No 223
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=96.42 E-value=0.0055 Score=41.20 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.2
Q ss_pred CCHHHHHHHhccCHHHHHHHHHH
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNR 28 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r 28 (77)
++..+||+++|||.+||||-++.
T Consensus 3 ~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 57899999999999999999974
No 224
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=96.40 E-value=0.0024 Score=36.99 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=22.9
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+++|||+++|++|.+
T Consensus 29 ~~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 29 DLDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4689999999999999999999974
No 225
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=96.40 E-value=0.0046 Score=32.68 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHh-----ccCHHHHHHHHHHHHHhcCC
Q psy15513 4 AGVRPCVISRQL-----RVSHGCVSKILNRYQETGSI 35 (77)
Q Consensus 4 ~G~s~~~iA~rf-----~VS~stv~r~~~r~r~tG~v 35 (77)
..++..+++..| +||.+||+|.++ +-|-+
T Consensus 18 ~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLV 51 (64)
T ss_dssp CCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCE
T ss_pred CCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCE
Confidence 348999999999 999999999999 55655
No 226
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=96.40 E-value=0.002 Score=40.06 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=31.4
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
+|..+||++++||++++.+++++.++.|=|...+
T Consensus 29 ~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~r 62 (143)
T 3t8r_A 29 ISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVR 62 (143)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecC
Confidence 7899999999999999999999999999996554
No 227
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=96.39 E-value=0.002 Score=41.57 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=30.9
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
.|.+++|+.||+|.+||.+++++..+.|-+.-.
T Consensus 25 ~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 25 PSVREIARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred CCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 799999999999999999999999999999654
No 228
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=96.38 E-value=0.0046 Score=35.38 Aligned_cols=33 Identities=12% Similarity=0.270 Sum_probs=30.5
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
.+..+||++||+|...|.|.+-.+.+.|.|.--
T Consensus 30 ~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 30 TTAISLSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 788999999999999999999999999999543
No 229
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=96.36 E-value=0.0024 Score=35.65 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHhc----cCHHHHHHHHHHHHHhcCCCccccC
Q psy15513 4 AGVRPCVISRQLR----VSHGCVSKILNRYQETGSIRPGVIG 41 (77)
Q Consensus 4 ~G~s~~~iA~rf~----VS~stv~r~~~r~r~tG~v~pk~~g 41 (77)
.+++..+||+.|+ +|++||++.+++..+.|-|.-.+.|
T Consensus 22 ~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~g 63 (82)
T 1p6r_A 22 SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEG 63 (82)
T ss_dssp SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEecC
Confidence 4589999999997 7999999999999999999766544
No 230
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=96.36 E-value=0.0027 Score=37.66 Aligned_cols=23 Identities=4% Similarity=0.057 Sum_probs=21.7
Q ss_pred cCCCCHHHHHHHhccCHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKI 25 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~ 25 (77)
+.|+|+.++|++.|||++++++|
T Consensus 47 ~~glTQ~eLA~~~gvs~~~is~~ 69 (101)
T 4ghj_A 47 NRDLTQSEVAEIAGIARKTVLNA 69 (101)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHcCCCHHHHHHH
Confidence 37999999999999999999998
No 231
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=96.36 E-value=0.0031 Score=41.48 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERR 55 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~ 55 (77)
.|++..++|++++||+++|++.+++..+.|=+.-.+.++.+.-.+|++-...
T Consensus 26 ~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l 77 (230)
T 3cta_A 26 AYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDV 77 (230)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHH
Confidence 4688999999999999999999999999887755443311223566654443
No 232
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=96.35 E-value=0.0058 Score=37.83 Aligned_cols=37 Identities=8% Similarity=0.242 Sum_probs=32.5
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc-cCCC
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGV-IGGS 43 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~-~gg~ 43 (77)
+..+||++++||.+++.+++.+.++.|=|...+ .||.
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG~GGy 62 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPGA 62 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSSSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecCCCCc
Confidence 899999999999999999999999999987654 3443
No 233
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=96.34 E-value=0.0032 Score=40.50 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=29.8
Q ss_pred cCCC--CHHHHHHHhccC-HHHHHHHHHHHHHhcCCC
Q psy15513 3 AAGV--RPCVISRQLRVS-HGCVSKILNRYQETGSIR 36 (77)
Q Consensus 3 ~~G~--s~~~iA~rf~VS-~stv~r~~~r~r~tG~v~ 36 (77)
+.|+ |..++|+.+||| ++||++|++...+.|-+.
T Consensus 21 ~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~~~l~ 57 (202)
T 1jhf_A 21 QTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIE 57 (202)
T ss_dssp HHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEE
T ss_pred HhCCCccHHHHHHHhCCCChHHHHHHHHHHHHCCCce
Confidence 3588 999999999999 999999999988877654
No 234
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=96.33 E-value=0.0036 Score=43.89 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCc
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~p 37 (77)
..+|..++|+.+|+|++||+++++++.+.|-+..
T Consensus 32 ~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~ 65 (380)
T 2hoe_A 32 SPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVE 65 (380)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3489999999999999999999999999998854
No 235
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=96.31 E-value=0.01 Score=40.05 Aligned_cols=55 Identities=9% Similarity=0.002 Sum_probs=44.2
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERRIEEY 59 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~i~~~ 59 (77)
++++.++|+.++|+++||++.+++..+.|=|.-.+...+++. .+|++-.+.+.++
T Consensus 174 ~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~~ 231 (250)
T 1p4x_A 174 IVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQL 231 (250)
T ss_dssp CEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHHH
Confidence 389999999999999999999999999999987777667764 4566544444433
No 236
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=96.30 E-value=0.0094 Score=40.33 Aligned_cols=22 Identities=27% Similarity=0.218 Sum_probs=20.5
Q ss_pred CCHHHHHHHhccCHHHHHHHHH
Q psy15513 6 VRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~ 27 (77)
++..+||+.+|||.+||||-++
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln 32 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLR 32 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 6899999999999999999885
No 237
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=96.29 E-value=0.0048 Score=39.28 Aligned_cols=34 Identities=9% Similarity=0.215 Sum_probs=31.8
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
++..+||++++||++++.+++++.++.|=|...+
T Consensus 45 ~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~r 78 (159)
T 3lwf_A 45 ISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIR 78 (159)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEec
Confidence 7999999999999999999999999999997654
No 238
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=96.28 E-value=0.0055 Score=40.92 Aligned_cols=67 Identities=10% Similarity=-0.071 Sum_probs=46.9
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcccc---CCCCC-CCCCHHHHHHHHHHHHhCCCCcHHHHHHHh
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI---GGSKP-RVATPDVERRIEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~---gg~~~-~~~~~~~~~~i~~~v~~~pd~tl~El~~~L 75 (77)
+.-+++.++|+.+|||.+|+..|- +.|-+.|... +|.|. +...-.....|..+.+. +++|.|+++.|
T Consensus 3 ~~~~~i~e~a~~~gvs~~tlr~y~----~~gll~p~~~d~~~g~R~y~~~~~~~l~~i~~l~~~--g~~l~~i~~~~ 73 (278)
T 1r8e_A 3 ESYYSIGEVSKLANVSIKALRYYD----KIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYI--GTPLEEMKKAQ 73 (278)
T ss_dssp CCEEEHHHHHHHHTCCHHHHHHHH----HTTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHT--TCCHHHHHHHT
T ss_pred CCcEeHHHHHHHHCcCHHHHHHHH----HCCCCCCCccCCCCCccccCHHHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence 345789999999999999998764 4599988643 55443 33333345567676443 79999998865
No 239
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=96.28 E-value=0.018 Score=38.89 Aligned_cols=66 Identities=14% Similarity=0.030 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHH---HHHHHHhCCCCcHHHHHHHh
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERR---IEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~---i~~~v~~~pd~tl~El~~~L 75 (77)
+.+++.++|+.+|||..|+.-|-+ .|-+.|.....+..+.=++.+... |..+. .-+++|.||.+.|
T Consensus 2 ~~~tI~evA~~~gvs~~TLRyYe~----~GLL~p~~~~~~GyR~Y~~~dl~~L~~I~~lr--~~G~sL~eIk~~l 70 (249)
T 3qao_A 2 NAMQIKELAELTGVSVRTLHHYDK----IGLLVPQKDDWNGYRIYSEKDVDKLQQILFFK--ELDFPLKKIQQIL 70 (249)
T ss_dssp CCBCHHHHHHHHCCCHHHHHHHHH----TTSSCCEECTTTCCEEBCHHHHHHHHHHHHHH--HTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH----CCCCCCceECCCCCeeeCHHHHHHHHHHHHHH--HCCCCHHHHHHHh
Confidence 468999999999999999987654 699988763222233344444443 44443 3468999988765
No 240
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=96.28 E-value=0.0052 Score=39.31 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=26.2
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQE 31 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~ 31 (77)
-.|+|..+||+.||||.++|.+++.+-+.
T Consensus 201 ~~g~s~~EIA~~lgis~~~V~~~~~ra~~ 229 (239)
T 1rp3_A 201 YEELPAKEVAKILETSVSRVSQLKAKALE 229 (239)
T ss_dssp TSCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999988664
No 241
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=96.28 E-value=0.004 Score=36.52 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.9
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+.+|||++++++|-+
T Consensus 20 ~~glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 20 EHGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3699999999999999999999965
No 242
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=96.25 E-value=0.0038 Score=40.66 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=32.7
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
+.+++..++|+.+|||++||++-+++..+.|-+...
T Consensus 31 ~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 31 NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 345899999999999999999999999999999655
No 243
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=96.23 E-value=0.0038 Score=38.73 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=23.1
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+.+|||+++|++|.+
T Consensus 79 ~~glTq~elA~~lGis~s~is~~E~ 103 (141)
T 3kxa_A 79 KKGFTQSELATAAGLPQPYLSRIEN 103 (141)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4799999999999999999999975
No 244
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=96.21 E-value=0.0031 Score=38.19 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=39.2
Q ss_pred CCCHHHHHHHh--ccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHH
Q psy15513 5 GVRPCVISRQL--RVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIE 57 (77)
Q Consensus 5 G~s~~~iA~rf--~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~ 57 (77)
.+++.++|+.| +||.++|++-+++..+.|-|...+. .--.+++.-.+++.
T Consensus 27 ~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~r---g~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 27 NGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLAN---GVYVITEEGEAYLN 78 (111)
T ss_dssp CBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECST---TCEEECHHHHHHHT
T ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCC---ceEEECchHHHHHH
Confidence 48999999999 9999999999999999999986421 13456665555443
No 245
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=96.18 E-value=0.0028 Score=37.59 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=23.8
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRY 29 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~ 29 (77)
..|-...++|+.||||.+|+++++++|
T Consensus 69 ~~~gn~~~AA~~LGIsR~TL~rkLkk~ 95 (98)
T 1eto_A 69 YTLGNQTRAALMMGINRGTLRKKLKKY 95 (98)
T ss_dssp HTTTCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HhCCCHHHHHHHhCCCHHHHHHHHHHh
Confidence 345678899999999999999999987
No 246
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=96.15 E-value=0.0048 Score=36.60 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=23.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+.+|||++++++|-+
T Consensus 34 ~~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 34 DYGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4799999999999999999999975
No 247
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=96.14 E-value=0.0024 Score=45.50 Aligned_cols=35 Identities=11% Similarity=0.184 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
..+|..++|+.+++|++||+++++++.+.|-+...
T Consensus 52 ~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 52 GPISRIDLSKESELAPASITKITRELIDAHLIHET 86 (429)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 34899999999999999999999999999988654
No 248
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=96.13 E-value=0.003 Score=34.08 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=21.3
Q ss_pred CHHHHHHHhccCHHHHHHHHHHH
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRY 29 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~ 29 (77)
...++|+.||||++|+++++++|
T Consensus 35 n~~~aA~~LGIsr~tL~rklkk~ 57 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIANKLKQY 57 (61)
T ss_dssp SHHHHHHHTTSCTHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHHHh
Confidence 67889999999999999999986
No 249
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=96.11 E-value=0.0052 Score=36.15 Aligned_cols=25 Identities=4% Similarity=0.117 Sum_probs=22.8
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+.+|||+++|++|.+
T Consensus 47 ~~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 47 EPTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 6799999999999999999999854
No 250
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=96.11 E-value=0.0099 Score=38.56 Aligned_cols=45 Identities=16% Similarity=0.039 Sum_probs=37.3
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCH
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATP 50 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~ 50 (77)
.+-+++|++||||.++|..-+++....|=|...|..|-.-...+.
T Consensus 36 L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~V~~~~~ 80 (218)
T 3sxy_A 36 LNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFFVTDVDE 80 (218)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTTEEEECCCCH
T ss_pred eCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCceEEcCCCH
Confidence 577899999999999999999999999999888765544344444
No 251
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=96.10 E-value=0.007 Score=40.19 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=34.7
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCC
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGS 43 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~ 43 (77)
.+..++|++||||.+||..-+++....|-|...|.+|-
T Consensus 50 L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~~G~ 87 (237)
T 3c7j_A 50 LRQQELATLFGVSRMPVREALRQLEAQSLLRVETHKGA 87 (237)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred eCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCce
Confidence 68899999999999999999999999999998876653
No 252
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=96.10 E-value=0.014 Score=38.74 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=31.9
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
+++..+||+++|++++||+|+++.+.+.|-+...
T Consensus 23 ~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 23 DVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC
Confidence 5999999999999999999999999999998754
No 253
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=96.09 E-value=0.0045 Score=36.55 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=22.3
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+.|+|..++|+++|||++++++|.
T Consensus 32 ~~gltq~elA~~~gis~~~is~~E 55 (114)
T 3vk0_A 32 NKGWSQEELARQCGLDRTYVSAVE 55 (114)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 479999999999999999999995
No 254
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=96.09 E-value=0.0049 Score=40.66 Aligned_cols=52 Identities=23% Similarity=0.212 Sum_probs=39.7
Q ss_pred CCCCH--HHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHH
Q psy15513 4 AGVRP--CVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEE 58 (77)
Q Consensus 4 ~G~s~--~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~ 58 (77)
.|+++ .++|++|+||++||++.+++..+.|-|.-.+. +.-.+|+.-.+.+.+
T Consensus 21 ~~~~~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~---~~v~LT~~G~~~~~~ 74 (230)
T 1fx7_A 21 EGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD---RHLELTEKGRALAIA 74 (230)
T ss_dssp HTSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT---SCEEECHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC---ccEEECHHHHHHHHH
Confidence 47777 99999999999999999999999999976653 333456654444333
No 255
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=96.05 E-value=0.0056 Score=36.54 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=22.8
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+.+|||++++++|-+
T Consensus 23 ~~glsq~~lA~~~gis~~~is~~E~ 47 (126)
T 3ivp_A 23 KQGLTREQVGAMIEIDPRYLTNIEN 47 (126)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 4799999999999999999999964
No 256
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=96.01 E-value=0.025 Score=37.12 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=32.9
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCCCc--ccc--CCC
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRP--GVI--GGS 43 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v~p--k~~--gg~ 43 (77)
+-+++|++||||.++|..-+++....|=|.. .|. +|-
T Consensus 30 sE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~ 70 (239)
T 2di3_A 30 SERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGT 70 (239)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCCc
Confidence 5679999999999999999999999999988 765 553
No 257
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=96.01 E-value=0.005 Score=37.31 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.8
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+++.++|+++|||+++|++|.+
T Consensus 51 ~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 51 RARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4699999999999999999999864
No 258
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=96.01 E-value=0.0078 Score=40.40 Aligned_cols=36 Identities=3% Similarity=0.018 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
.+++..+||+++|+++|||+|+++.+.+.|-+...+
T Consensus 37 ~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~ 72 (260)
T 2o0y_A 37 PTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRA 72 (260)
T ss_dssp SSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC
Confidence 579999999999999999999999999999987654
No 259
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=96.00 E-value=0.0077 Score=42.85 Aligned_cols=56 Identities=9% Similarity=0.050 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERRIEEY 59 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~i~~~ 59 (77)
.|++..++|++++++.+||.+.+++..+.|=|.-.+...+++. .+|+.-.+.+.++
T Consensus 419 ~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~~~ 477 (487)
T 1hsj_A 419 NEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKL 477 (487)
T ss_dssp SEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHHHH
Confidence 4699999999999999999999999999999988777667764 3455444444333
No 260
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=95.95 E-value=0.014 Score=37.86 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=38.0
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHH
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDV 52 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~ 52 (77)
.+-+++|++||||.++|.--+++....|=|...|..|-.-...+...
T Consensus 40 L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~~G~~V~~~~~~~ 86 (222)
T 3ihu_A 40 LVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRHRGAVIRRLSLQE 86 (222)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSTTCEEECCCCHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCeEEecCCHHH
Confidence 45788999999999999999999999999988876654444444433
No 261
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=95.93 E-value=0.0084 Score=38.45 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=29.7
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcC-CCc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGS-IRP 37 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~-v~p 37 (77)
+|..++|++|+||.+||++-++..++.|- +..
T Consensus 37 ~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 37 VSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 89999999999999999999999999997 543
No 262
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=95.91 E-value=0.0038 Score=40.67 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=24.2
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHH
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNR 28 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r 28 (77)
.+.|+|..++|+++|||++||++|.+.
T Consensus 27 ~~~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 27 NELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp TTTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 357999999999999999999999753
No 263
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=95.90 E-value=0.0063 Score=39.97 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=29.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCC
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v 35 (77)
..|+|..+||+.++||.+||...+++.++.=.+
T Consensus 188 ~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 188 SKGKTASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 479999999999999999999999998875444
No 264
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=95.87 E-value=0.009 Score=35.71 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=23.6
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQ 30 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r 30 (77)
.+|..++|+..+||.+||.|..++.=
T Consensus 35 ~~si~elA~~~~vS~aTv~Rf~kkLG 60 (107)
T 3iwf_A 35 NMTSQEIANQLETSSTSIIRLSKKVT 60 (107)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred HCCHHHHHHHHCCCHHHHHHHHHHhC
Confidence 48999999999999999999998753
No 265
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=95.85 E-value=0.004 Score=40.09 Aligned_cols=39 Identities=8% Similarity=0.113 Sum_probs=33.8
Q ss_pred CccCCCCHHHHHHHhc-cCHHHHHHHHHHHHHhcCCCccc
Q psy15513 1 MAAAGVRPCVISRQLR-VSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 1 l~~~G~s~~~iA~rf~-VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
|.+.+++.+++|..|+ +|++||++-++..++.|=|...+
T Consensus 32 L~~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~~~~ 71 (182)
T 4g6q_A 32 LIGRSLTTRELAELLPDVATTTLYRQVGILVKAGVLMVTA 71 (182)
T ss_dssp TTTSCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 4556799999999996 99999999999999999986443
No 266
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=95.84 E-value=0.0064 Score=35.78 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHhc----cCHHHHHHHHHHHHHhcCCCcccc
Q psy15513 4 AGVRPCVISRQLR----VSHGCVSKILNRYQETGSIRPGVI 40 (77)
Q Consensus 4 ~G~s~~~iA~rf~----VS~stv~r~~~r~r~tG~v~pk~~ 40 (77)
.++++.+||+.++ ||++||++.+++..+.|-|.-.+.
T Consensus 23 ~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~ 63 (123)
T 1okr_A 23 KYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD 63 (123)
T ss_dssp SSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec
Confidence 4689999999999 899999999999999999977655
No 267
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=95.84 E-value=0.0096 Score=39.84 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
.+++..+||+++|++++||+|+++.+.+.|-+...
T Consensus 28 ~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~ 62 (257)
T 2g7u_A 28 PNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGS 62 (257)
T ss_dssp SSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 46999999999999999999999999999988653
No 268
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=95.83 E-value=0.007 Score=35.58 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.5
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+++|||++++++|-+
T Consensus 39 ~~glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 39 DKGVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3689999999999999999999953
No 269
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=95.83 E-value=0.0069 Score=35.25 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=22.6
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|++..++|+++|||++++++|-+
T Consensus 39 ~~gltq~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 39 EKGMTQEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4799999999999999999999853
No 270
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=95.82 E-value=0.01 Score=39.60 Aligned_cols=36 Identities=17% Similarity=0.091 Sum_probs=32.0
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCC
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG 42 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg 42 (77)
|-+++|++||||..||.+-++...+.|-+...+..|
T Consensus 36 se~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G 71 (243)
T 2wv0_A 36 SEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRG 71 (243)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeCCCe
Confidence 679999999999999999999999999998665433
No 271
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=95.82 E-value=0.0077 Score=36.05 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRY 29 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~ 29 (77)
.+|..++|+..+||.+||.|..+..
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~kkl 63 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCXSL 63 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hcCHHHHHHHHCCCHHHHHHHHHHc
Confidence 5899999999999999999998753
No 272
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=95.77 E-value=0.0065 Score=40.39 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
+++..+||+++|++++||+|+++.+.+.|-|.-.+
T Consensus 21 ~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~ 55 (241)
T 2xrn_A 21 GLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALG 55 (241)
T ss_dssp CEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 58999999999999999999999999999997654
No 273
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=95.77 E-value=0.016 Score=38.38 Aligned_cols=45 Identities=22% Similarity=0.158 Sum_probs=37.0
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCH
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATP 50 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~ 50 (77)
.+-.++|++||||.++|..-+++....|-|...|..|-.-...+.
T Consensus 52 L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~V~~~~~ 96 (239)
T 2hs5_A 52 LSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRVPTA 96 (239)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCCCH
T ss_pred eCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCCeeEEeCCCH
Confidence 578899999999999999999999999999888765544333443
No 274
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=95.76 E-value=0.0074 Score=39.78 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=31.9
Q ss_pred CCCCH--HHHHHHhccCHHHHHHHHHHHHHhcCCCccc
Q psy15513 4 AGVRP--CVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 4 ~G~s~--~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
.|.++ .++|++|+||++||++.+++..+.|-|.-.+
T Consensus 21 ~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~ 58 (226)
T 2qq9_A 21 EGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVAS 58 (226)
T ss_dssp HTCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred cCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 46665 9999999999999999999999999987654
No 275
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=95.74 E-value=0.0017 Score=45.43 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=0.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccC
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIG 41 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~g 41 (77)
..|++..++|++|+||.+||.|.+++..+.|-|.-+..|
T Consensus 32 ~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~~~~g 70 (345)
T 2o0m_A 32 MQPIGRRSLSETMGITERVLRTETDVLKQLNLIEPSKSG 70 (345)
T ss_dssp ---------------------------------------
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecc
Confidence 367999999999999999999999999999999755443
No 276
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=95.73 E-value=0.0017 Score=43.84 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=0.0
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHHH
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNRY 29 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r~ 29 (77)
.+.-++..+||+++|||.+||||-++..
T Consensus 2 ~~~~~ti~diA~~agVS~~TVSrvln~~ 29 (332)
T 2o20_A 2 VESTTTIYDVARVAGVSMATVSRVVNGN 29 (332)
T ss_dssp ----------------------------
T ss_pred CCCCCcHHHHHHHHCCCHHHHHHHHcCC
Confidence 3444788999999999999999999863
No 277
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=95.71 E-value=0.0056 Score=41.80 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=20.4
Q ss_pred CCHHHHHHHhccCHHHHHHHHH
Q psy15513 6 VRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~ 27 (77)
.+..+||+.+|||.+||||-++
T Consensus 10 ~Ti~diA~~aGVS~~TVSrvLn 31 (366)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYN 31 (366)
T ss_dssp THHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHC
Confidence 5689999999999999999996
No 278
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=95.70 E-value=0.0058 Score=40.18 Aligned_cols=38 Identities=26% Similarity=0.225 Sum_probs=33.5
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcccc
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI 40 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~ 40 (77)
+.+++..++|+.++||++||++-+++..+.|-|...+.
T Consensus 26 ~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~ 63 (202)
T 2p4w_A 26 KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVE 63 (202)
T ss_dssp HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEee
Confidence 35689999999999999999999999999999965443
No 279
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=95.69 E-value=0.011 Score=35.26 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhc--cCHHHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLR--VSHGCVSKILNRY 29 (77)
Q Consensus 4 ~G~s~~~iA~rf~--VS~stv~r~~~r~ 29 (77)
.+.|+.+|+..|| ||.+||++|+++.
T Consensus 76 ~~~s~~~i~~~lg~~~s~~tV~r~l~~~ 103 (141)
T 1u78_A 76 SCKTARDIRNELQLSASKRTILNVIKRS 103 (141)
T ss_dssp CCCCHHHHHHHTTCCSCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCccHHHHHHHHHHC
Confidence 3489999999999 8999999999863
No 280
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=95.68 E-value=0.016 Score=34.21 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQE 31 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~ 31 (77)
.|+|..+||..+|||.+||..++.+-..
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlk 65 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALR 65 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6899999999999999999998876543
No 281
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=95.65 E-value=0.015 Score=35.92 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHh
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQET 32 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~t 32 (77)
+|.+..++|+++|+|..+|++++++.+..
T Consensus 91 ~G~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 91 NGRNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp CSSCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 49999999999999999999999988764
No 282
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=95.65 E-value=0.012 Score=36.75 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=30.3
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
++..++|..+|+|+.||+|.++++++.|-+.-.
T Consensus 168 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~ 200 (210)
T 3ryp_A 168 ITRQEIGQIVGCSRETVGRILKMLEDQNLISAH 200 (210)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeC
Confidence 688999999999999999999999999988643
No 283
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=95.64 E-value=0.012 Score=36.64 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=30.3
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
++..++|..+|+|+.||+|.++++++.|-+.-.
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 197 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVK 197 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 688999999999999999999999999988643
No 284
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=95.63 E-value=0.0091 Score=39.45 Aligned_cols=33 Identities=15% Similarity=-0.013 Sum_probs=29.2
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCC
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v 35 (77)
..|++..+||+.++||.+||...+++.++.=.+
T Consensus 188 ~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (237)
T 3szt_A 188 AVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNS 220 (237)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 479999999999999999999999998876444
No 285
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=95.61 E-value=0.0088 Score=36.99 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=36.8
Q ss_pred ccCCCCHHHHHHHh-ccCHHHHHHHHHHHHHhcCCCccccCCCCC
Q psy15513 2 AAAGVRPCVISRQL-RVSHGCVSKILNRYQETGSIRPGVIGGSKP 45 (77)
Q Consensus 2 ~~~G~s~~~iA~rf-~VS~stv~r~~~r~r~tG~v~pk~~gg~~~ 45 (77)
+...++..++++.+ +||.+++++-+++..+.|=|.-.+...+++
T Consensus 36 ~~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r 80 (131)
T 4a5n_A 36 IDGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPP 80 (131)
T ss_dssp TTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred hcCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCC
Confidence 34458999999999 999999999999999999997665544444
No 286
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=95.61 E-value=0.012 Score=37.63 Aligned_cols=54 Identities=15% Similarity=0.303 Sum_probs=37.8
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCC
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAM 66 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~ 66 (77)
++..+||..+|+|+.||+|.++++++.| +. . .+++-.+.+ .+.+.++....|..
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i~-~--~~~~i~I~d---~~~L~~~~~~~~~~ 232 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLKAAG-VT-V--KRNHAEIED---IALLRDYAESDPAD 232 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHGGGT-EE-C--CTTEEEESC---HHHHHHHHCC----
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCC-eE-e--eCCEEEEcC---HHHHHHHhcCCccc
Confidence 5688999999999999999999999999 73 2 222324444 45577777666644
No 287
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=95.58 E-value=0.002 Score=40.04 Aligned_cols=29 Identities=3% Similarity=0.054 Sum_probs=26.4
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQE 31 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~ 31 (77)
-.|+|..+||..+|||.+||.+++.+-+.
T Consensus 149 ~~g~s~~eIA~~lgis~~tV~~~l~ra~~ 177 (184)
T 2q1z_A 149 FGDLTHRELAAETGLPLGTIKSRIRLALD 177 (184)
T ss_dssp HSCCSSCCSTTTCCCCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 37999999999999999999999998765
No 288
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=95.57 E-value=0.011 Score=38.67 Aligned_cols=33 Identities=18% Similarity=0.018 Sum_probs=29.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCC
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v 35 (77)
..|+|..+||..++||.+||...+++.++.=.+
T Consensus 186 ~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 186 AVGKTMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 479999999999999999999999998875444
No 289
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=95.55 E-value=0.001 Score=40.60 Aligned_cols=36 Identities=14% Similarity=-0.028 Sum_probs=31.4
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCC
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG 42 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg 42 (77)
|.+++|+.||||.+||.+-+++..+.|-|...+..|
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~~G 72 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGIG 72 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTTE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcCCc
Confidence 778999999999999999999999999998876444
No 290
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=95.55 E-value=0.036 Score=35.28 Aligned_cols=51 Identities=6% Similarity=-0.045 Sum_probs=39.2
Q ss_pred CCHHHHHHHhc-cCHHHHHHHHHHHHHhcCCCccc-----cCCCCC---CCCCHHHHHHH
Q psy15513 6 VRPCVISRQLR-VSHGCVSKILNRYQETGSIRPGV-----IGGSKP---RVATPDVERRI 56 (77)
Q Consensus 6 ~s~~~iA~rf~-VS~stv~r~~~r~r~tG~v~pk~-----~gg~~~---~~~~~~~~~~i 56 (77)
++..+++..++ ||++||++-|+.+.+.|-|.... .++++| -.++++-.+.+
T Consensus 46 ~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 46 LSVEELLYRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp BCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence 78999999999 99999999999999999997432 122333 36777655554
No 291
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=95.55 E-value=0.011 Score=39.34 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=32.4
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCC
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG 42 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg 42 (77)
|-+++|++||||..||.+-++...+.|-+...+..|
T Consensus 35 se~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G 70 (236)
T 3edp_A 35 NETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGVG 70 (236)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECCce
Confidence 788999999999999999999999999998776443
No 292
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=95.53 E-value=0.016 Score=36.49 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=30.5
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCc
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~p 37 (77)
-++..++|..+|+|+.||+|.++++++.|-+.-
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 201 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKL 201 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 468899999999999999999999999999864
No 293
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=95.52 E-value=0.019 Score=38.73 Aligned_cols=54 Identities=7% Similarity=-0.039 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCC---CCCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR---VATPDVERRIE 57 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~---~~~~~~~~~i~ 57 (77)
+|+++.++|++++++.+|+.+.+++..+.|=|.-.+...+++. .+|+.-.+.+.
T Consensus 49 ~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~ 105 (250)
T 1p4x_A 49 NTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIA 105 (250)
T ss_dssp SEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHH
Confidence 4799999999999999999999999999999987777777775 35665444333
No 294
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=95.52 E-value=0.016 Score=36.36 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=30.2
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~p 37 (77)
++..++|..+|+|+.||+|.++++++.|-+.-
T Consensus 164 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 195 (216)
T 4ev0_A 164 IRHHELAALAGTSRETVSRVLHALAEEGVVRL 195 (216)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 68899999999999999999999999999974
No 295
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=95.51 E-value=0.011 Score=35.35 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=25.4
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCc
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~p 37 (77)
+.|+|..++|+++|||+++|++| |.|...|
T Consensus 18 ~~glSq~eLA~~~gis~~~is~i-----E~G~~~~ 47 (112)
T 2wus_R 18 ERRITLLDASLFTNINPSKLKRI-----EEGDLKG 47 (112)
T ss_dssp TTTCCHHHHHHHSSCCHHHHHHH-----HHTCCTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH-----HCCCCCC
Confidence 47999999999999999999986 5676544
No 296
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=95.50 E-value=0.011 Score=39.70 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
.+++..+||+++|+++|||+|+++.+.+.|-+...
T Consensus 35 ~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~ 69 (265)
T 2ia2_A 35 QRRTLSDVARATDLTRATARRFLLTLVELGYVATD 69 (265)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEES
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 56899999999999999999999999999988653
No 297
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=95.50 E-value=0.025 Score=34.98 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHh-----ccCHHHHHHHHHHHHHhcCCCccccCC
Q psy15513 4 AGVRPCVISRQL-----RVSHGCVSKILNRYQETGSIRPGVIGG 42 (77)
Q Consensus 4 ~G~s~~~iA~rf-----~VS~stv~r~~~r~r~tG~v~pk~~gg 42 (77)
..+|+.+|...+ +||.+||||-++.+.+.|-|..-..++
T Consensus 36 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~ 79 (145)
T 2fe3_A 36 AHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGD 79 (145)
T ss_dssp SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTT
T ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCC
Confidence 358999999999 899999999999999999997655543
No 298
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=95.48 E-value=0.014 Score=36.86 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=30.7
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
-++..++|..+|+|+.||+|.++++++.|-+.-.
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 211 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLD 211 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEES
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEec
Confidence 3678999999999999999999999999988643
No 299
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=95.48 E-value=0.011 Score=39.76 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
.+++..|||+++|+++|||+|+++-+.+.|=+.--+
T Consensus 20 ~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~ 55 (260)
T 3r4k_A 20 LEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVE 55 (260)
T ss_dssp SEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcC
Confidence 468999999999999999999999999999997544
No 300
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=95.47 E-value=0.015 Score=36.39 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=39.2
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCC
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENP 64 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~p 64 (77)
++..++|..+|+|+.||+|.++++++.|-+.-. +++-...++ +.+.++....+
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~---~~~i~i~d~---~~L~~~~~~~~ 199 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELAREGYIRSG---YGKIQLLDL---KGLKELAESRG 199 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEESCH---HHHHHHHTSCC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC---CCEEEEeCH---HHHHHHhcccc
Confidence 688999999999999999999999999998743 223234443 34666554443
No 301
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=95.47 E-value=0.015 Score=36.82 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=30.4
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
++..++|..+|+|+.||+|.++++++.|-+.-.
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 220 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADGLLHAR 220 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEC
Confidence 688999999999999999999999999988643
No 302
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=95.46 E-value=0.015 Score=33.25 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=21.1
Q ss_pred cCCCCHHHHHHHhccCHHH----HHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGC----VSKIL 26 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~st----v~r~~ 26 (77)
+.|+|..++|+.+|||+++ +++|-
T Consensus 12 ~~glsq~~lA~~~gis~~~~~~~is~~E 39 (98)
T 3lfp_A 12 RAGISQEKLGVLAGIDEASASARMNQYE 39 (98)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCcchhhhHHHHHH
Confidence 4699999999999999999 77764
No 303
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=95.45 E-value=0.014 Score=39.60 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=31.5
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCC
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG 42 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg 42 (77)
|-+++|++||||..||.+-+++..+.|-|...+..|
T Consensus 55 se~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G 90 (272)
T 3eet_A 55 SQARIREEYGVSDTVALEARKVLMAEGLVEGRSGSG 90 (272)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC--
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCce
Confidence 789999999999999999999999999997766433
No 304
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=95.44 E-value=0.0069 Score=39.37 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=24.2
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRY 29 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~ 29 (77)
+.|++..+||++||+|.++|++.++-.
T Consensus 50 ~~G~t~eeiA~~lG~s~s~V~~~LrLl 76 (178)
T 1r71_A 50 AKGKKKGDIAKEIGKSPAFITQHVTLL 76 (178)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHGGG
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 469999999999999999999988764
No 305
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=95.42 E-value=0.019 Score=38.25 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=27.8
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhc
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETG 33 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG 33 (77)
-.|+|..+||..+|||.+||...+.|.++.=
T Consensus 210 ~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL 240 (258)
T 3clo_A 210 RKGLSSKEIAATLYISVNTVNRHRQNILEKL 240 (258)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999987643
No 306
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=95.40 E-value=0.016 Score=36.22 Aligned_cols=54 Identities=19% Similarity=0.138 Sum_probs=40.2
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCC
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPA 65 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd 65 (77)
++..++|..+|+|+.||+|.++++++.|-+.-. +++-...+ .+.+.++....++
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~---~~~i~i~d---~~~L~~~~~~~~e 193 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLRREGLIATA---YRRVYLLD---LAALEREAGSALE 193 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEE---TTEEEECC---HHHHHHHHCSCCC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec---CCEEEEeC---HHHHHHHhccccc
Confidence 688999999999999999999999999988654 22223444 3446666655544
No 307
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=95.39 E-value=0.0027 Score=43.13 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=0.0
Q ss_pred CCHHHHHHHhccCHHHHHHHHHH
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNR 28 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r 28 (77)
++..+||+++|||.+||||-++.
T Consensus 7 ~ti~diA~~agVS~~TVSr~Ln~ 29 (333)
T 3jvd_A 7 SSLKEVAELAGVGYATASRALSG 29 (333)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 67899999999999999999984
No 308
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=95.38 E-value=0.022 Score=33.69 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=36.4
Q ss_pred CCC--HHHHHHHh-ccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHH
Q psy15513 5 GVR--PCVISRQL-RVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPD 51 (77)
Q Consensus 5 G~s--~~~iA~rf-~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~ 51 (77)
.++ ..++++.+ |||++++++-+++..+.|=|...+. ....-.+|+.
T Consensus 40 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~y~LT~~ 88 (111)
T 3df8_A 40 STRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG-QITTYALTEK 88 (111)
T ss_dssp SSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES-SSEEEEECHH
T ss_pred CCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec-CcEEEEECcc
Confidence 356 99999999 9999999999999999999986654 1112356664
No 309
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=95.37 E-value=0.015 Score=33.25 Aligned_cols=35 Identities=6% Similarity=0.220 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHhccCHH-HHHHHHHHHHHhcCCCcc
Q psy15513 4 AGVRPCVISRQLRVSHG-CVSKILNRYQETGSIRPG 38 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~s-tv~r~~~r~r~tG~v~pk 38 (77)
.+.++.+||+.|||+.. .|.+-+....+.|-|.-.
T Consensus 24 g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~ 59 (79)
T 1xmk_A 24 SDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQ 59 (79)
T ss_dssp CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEec
Confidence 45889999999999999 999999999999999844
No 310
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=95.36 E-value=0.012 Score=38.45 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=32.4
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCC
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG 42 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg 42 (77)
|-+++|++||||.+||..-+++....|-|...+..|
T Consensus 33 sE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~g~G 68 (239)
T 1hw1_A 33 AERELSELIGVTRTTLREVLQRLARDGWLTIQHGKP 68 (239)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEecCCC
Confidence 678999999999999999999999999998776443
No 311
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=95.35 E-value=0.017 Score=36.61 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=30.1
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~p 37 (77)
++..++|..+|+|+.||+|.++++++.|-+.-
T Consensus 178 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 209 (227)
T 3d0s_A 178 LTQEEIAQLVGASRETVNKALADFAHRGWIRL 209 (227)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe
Confidence 68999999999999999999999999998865
No 312
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=95.34 E-value=0.02 Score=36.74 Aligned_cols=33 Identities=30% Similarity=0.281 Sum_probs=30.5
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
++..++|..+|+|+.||+|.++++++.|-+.-.
T Consensus 187 ~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~ 219 (232)
T 1zyb_A 187 VKMDDLARCLDDTRLNISKTLNELQDNGLIELH 219 (232)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEE
T ss_pred CCHHHHHHHhCCChhHHHHHHHHHHHCCCEEec
Confidence 689999999999999999999999999988643
No 313
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=95.33 E-value=0.018 Score=36.65 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=30.6
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
++..++|..+|+|+.||+|.++++++.|-+.-.
T Consensus 176 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~ 208 (231)
T 3e97_A 176 LGTQDIMARTSSSRETVSRVLKRLEAHNILEVS 208 (231)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEec
Confidence 688999999999999999999999999998753
No 314
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=95.32 E-value=0.011 Score=37.36 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=22.9
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+++|||++++++|.+
T Consensus 22 ~~gltq~~lA~~~gis~~~is~~e~ 46 (192)
T 1y9q_A 22 SRGLSLDATAQLTGVSKAMLGQIER 46 (192)
T ss_dssp HTTCCHHHHHHHHSSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4799999999999999999999964
No 315
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=95.32 E-value=0.013 Score=38.20 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=33.3
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHh-cCCCccccCCCCCCCCCHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQET-GSIRPGVIGGSKPRVATPD 51 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~t-G~v~pk~~gg~~~~~~~~~ 51 (77)
+.| |...+|++++||+++|++-+++..+. |.----+. +++-.+|++
T Consensus 16 ~~g-s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~--~~~~~lT~~ 62 (306)
T 3hhg_A 16 ESG-SFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRT--TRQLSLTEE 62 (306)
T ss_dssp HSS-SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEETT--SSSCEECHH
T ss_pred HcC-CHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEeec--CCCeeECHh
Confidence 445 88999999999999999999999854 54433322 244456664
No 316
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=95.31 E-value=0.018 Score=36.47 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=30.5
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCc
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~p 37 (77)
.++..++|..+|+|+.||+|.++++++.|-+.-
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 199 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILER 199 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE
Confidence 478999999999999999999999999998864
No 317
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=95.31 E-value=0.024 Score=34.98 Aligned_cols=37 Identities=14% Similarity=0.026 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHh----------ccCHHHHHHHHHHHHHhcCCCcccc
Q psy15513 4 AGVRPCVISRQL----------RVSHGCVSKILNRYQETGSIRPGVI 40 (77)
Q Consensus 4 ~G~s~~~iA~rf----------~VS~stv~r~~~r~r~tG~v~pk~~ 40 (77)
.+++..+|+..| .||.+||++|++++...|.=.|-+.
T Consensus 100 ~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~~~~~~ 146 (159)
T 2k27_A 100 PTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDS 146 (159)
T ss_dssp SSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSCCCCCC
T ss_pred ccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCccCcccC
Confidence 357899999887 4899999999999999887766553
No 318
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=95.26 E-value=0.015 Score=38.56 Aligned_cols=34 Identities=21% Similarity=0.153 Sum_probs=31.1
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCCCcccc
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI 40 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~ 40 (77)
|-+++|++||||..||.+-++...+.|-+...+.
T Consensus 31 se~~La~~~~vSr~tvr~Al~~L~~~g~i~~~~g 64 (239)
T 3bwg_A 31 VLETLMAQFEVSKSTITKSLELLEQKGAIFQVRG 64 (239)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeCC
Confidence 7889999999999999999999999999976654
No 319
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=95.24 E-value=0.011 Score=39.07 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=23.6
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
.+.|++..++|+.+|||+++|++|++
T Consensus 40 ~~~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 40 QQHNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCChHHHHHHHh
Confidence 35799999999999999999999975
No 320
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=95.23 E-value=0.017 Score=35.07 Aligned_cols=38 Identities=11% Similarity=0.059 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHh-----ccCHHHHHHHHHHHHHhcCCCccccC
Q psy15513 4 AGVRPCVISRQL-----RVSHGCVSKILNRYQETGSIRPGVIG 41 (77)
Q Consensus 4 ~G~s~~~iA~rf-----~VS~stv~r~~~r~r~tG~v~pk~~g 41 (77)
..+|+.+|...+ +||.+||||-++.+.+.|-|..-..+
T Consensus 25 ~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~ 67 (131)
T 2o03_A 25 DFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTD 67 (131)
T ss_dssp SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECT
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeC
Confidence 347899999999 99999999999999999998655443
No 321
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=95.23 E-value=0.027 Score=35.72 Aligned_cols=33 Identities=21% Similarity=0.143 Sum_probs=30.6
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
++..++|..+|+|+.||+|.++++++.|-+.-.
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~ 196 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISRQ 196 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEEC
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEc
Confidence 789999999999999999999999999988653
No 322
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=95.22 E-value=0.013 Score=34.61 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHhc----cCHHHHHHHHHHHHHhcCCCccccC
Q psy15513 4 AGVRPCVISRQLR----VSHGCVSKILNRYQETGSIRPGVIG 41 (77)
Q Consensus 4 ~G~s~~~iA~rf~----VS~stv~r~~~r~r~tG~v~pk~~g 41 (77)
.+++..+|++.++ ++.+||++.+.+..+.|-|.-.+.|
T Consensus 48 ~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~g 89 (99)
T 2k4b_A 48 GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKEG 89 (99)
T ss_dssp SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEET
T ss_pred CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeCC
Confidence 4689999999997 5799999999999999999766544
No 323
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=95.21 E-value=0.032 Score=31.46 Aligned_cols=28 Identities=7% Similarity=0.099 Sum_probs=23.2
Q ss_pred cCC-CCHHHHHHHhccCHHHHHHHHHHHH
Q psy15513 3 AAG-VRPCVISRQLRVSHGCVSKILNRYQ 30 (77)
Q Consensus 3 ~~G-~s~~~iA~rf~VS~stv~r~~~r~r 30 (77)
.+| ||+..+|+.|||.++|...=++-..
T Consensus 27 r~g~mS~~~Aak~yGVP~sTL~~RVk~~~ 55 (70)
T 2cob_A 27 MSGKMSVSKAQSIYGIPHSTLEYKVKERL 55 (70)
T ss_dssp HTTSSCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HcCCccHHHHHHHhCCChHHHHHHHHhhc
Confidence 357 9999999999999999987665543
No 324
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=95.15 E-value=0.0098 Score=31.61 Aligned_cols=32 Identities=16% Similarity=0.023 Sum_probs=25.4
Q ss_pred CHHHHHHHh--ccCHHHHHHHHHHHHHhcCC--CccccCC
Q psy15513 7 RPCVISRQL--RVSHGCVSKILNRYQETGSI--RPGVIGG 42 (77)
Q Consensus 7 s~~~iA~rf--~VS~stv~r~~~r~r~tG~v--~pk~~gg 42 (77)
+..|.|+.+ .+|.+||+||.+. |.+ .|.+.|+
T Consensus 4 tl~EwA~~~~~~~s~~Tl~r~ar~----G~I~Pp~~KvGr 39 (52)
T 2og0_A 4 TLQEWNARQRRPRSLETVRRWVRE----SRIFPPPVKDGR 39 (52)
T ss_dssp EHHHHHHTSSSCCCHHHHHHHHHT----TCEESCCEEETT
T ss_pred eHHHHHHHhcCCCCHHHHHHHHHC----CCCCCcccccCC
Confidence 457888887 7999999999765 999 6666674
No 325
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=95.14 E-value=0.0036 Score=40.04 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=0.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQE 31 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~ 31 (77)
-.|+|..+||+.||||.+||.+++.+-++
T Consensus 212 ~~g~s~~EIA~~lgis~~tV~~~~~ra~~ 240 (243)
T 1l0o_C 212 YKDQTQSEVASRLGISQVQMSRLEKKILQ 240 (243)
T ss_dssp -----------------------------
T ss_pred hcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 47999999999999999999999988654
No 326
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=95.13 E-value=0.016 Score=35.25 Aligned_cols=31 Identities=10% Similarity=0.147 Sum_probs=26.2
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
+.|+|..++|++.|||++++++| |.|...|.
T Consensus 14 ~~gltq~elA~~~gis~~~is~i-----E~g~~~~~ 44 (130)
T 3fym_A 14 RLGMTLTELEQRTGIKREMLVHI-----ENNEFDQL 44 (130)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHH-----HTTCGGGS
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH-----HCCCCCCC
Confidence 47999999999999999999987 56766554
No 327
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=95.12 E-value=0.016 Score=33.69 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=21.4
Q ss_pred CCCHHHHHHHhccCHHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
|+++.++|+..|||++|++.+.+
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHT
T ss_pred hcCHHHHHHHcCCCHHHHHHHHc
Confidence 99999999999999999998753
No 328
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=95.09 E-value=0.02 Score=34.79 Aligned_cols=38 Identities=11% Similarity=0.013 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHhc----cCHHHHHHHHHHHHHhcCCCccccC
Q psy15513 4 AGVRPCVISRQLR----VSHGCVSKILNRYQETGSIRPGVIG 41 (77)
Q Consensus 4 ~G~s~~~iA~rf~----VS~stv~r~~~r~r~tG~v~pk~~g 41 (77)
.+++..+|+++|+ |+.+||++.+++..+.|-|.-.+.+
T Consensus 23 ~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~~ 64 (138)
T 2g9w_A 23 EPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDD 64 (138)
T ss_dssp SCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 5699999999998 8999999999999999999776543
No 329
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=95.08 E-value=0.016 Score=36.69 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=22.9
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|..++|+++|||++++++|-+
T Consensus 21 ~~g~s~~~la~~~gis~~~ls~~e~ 45 (198)
T 2bnm_A 21 QVKMDHAALASLLGETPETVAAWEN 45 (198)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4799999999999999999999865
No 330
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=95.06 E-value=0.024 Score=36.08 Aligned_cols=34 Identities=3% Similarity=-0.015 Sum_probs=31.0
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
-++..++|..+|+|+.||+|.++++++.|-+.-.
T Consensus 180 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 213 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTFVSERMLALD 213 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeC
Confidence 4688999999999999999999999999988644
No 331
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=95.05 E-value=0.024 Score=36.72 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=43.4
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCc
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAMF 67 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~t 67 (77)
-++..++|..+|+|+.||+|.++++++.|-+.-. +++-.+.+ .+.+.++.+..|...
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~---~~~i~i~d---~~~L~~~a~~~~~~~ 233 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKK---KNKIIVYN---LGELKHLSEQTSYYS 233 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC---SSEEEESC---HHHHHHHHTSSCCCC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeC---CCEEEEec---HHHHHHHHccCcccc
Confidence 4689999999999999999999999999988754 22223343 456778777766543
No 332
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=95.04 E-value=0.024 Score=36.69 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=30.9
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
-++..++|..+|+|+.||+|.++++++.|-+.-.
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~ 226 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIH 226 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEc
Confidence 3688999999999999999999999999988743
No 333
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=95.04 E-value=0.013 Score=34.04 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=20.1
Q ss_pred CCHHHHHHHhccCHHHHHHHHHH
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNR 28 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r 28 (77)
+....+|+..||+.|||+||-.-
T Consensus 25 ~gQ~~vAe~~GvdeStISR~k~~ 47 (83)
T 1zs4_A 25 LGTEKTAEAVGVDKSQISRWKRD 47 (83)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HhhHHHHHHhCCCHHHHhhhhhh
Confidence 45788999999999999999763
No 334
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=95.00 E-value=0.019 Score=38.72 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=29.2
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCC
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v 35 (77)
..|++..+||+.++||.+||...+++.++.=.+
T Consensus 210 ~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 210 SRGKTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 479999999999999999999999998876444
No 335
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=94.99 E-value=0.0042 Score=42.02 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=0.0
Q ss_pred CCHHHHHHHhccCHHHHHHHHHH
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNR 28 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r 28 (77)
++..+||+.+|||.+||||-++.
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 67899999999999999999975
No 336
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=94.99 E-value=0.026 Score=36.50 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=31.1
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHh-cCCCccccCCCCCCCCCHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQET-GSIRPGVIGGSKPRVATPD 51 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~t-G~v~pk~~gg~~~~~~~~~ 51 (77)
+.| |...+|++++||+++|++-+++..+. |.---.+ . +++-.+|++
T Consensus 14 ~~g-s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R-~-~~~~~lT~~ 60 (294)
T 1ixc_A 14 EAG-NMAAAAKRLHVSQPPITRQMQALEADLGVVLLER-S-HRGIELTAA 60 (294)
T ss_dssp HHS-SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCBC-------CCBCHH
T ss_pred HcC-CHHHHHHHhCCCcchHHHHHHHHHHHHCCEEEEe-C-CCCeeECHh
Confidence 345 88999999999999999999999854 4333332 2 233456664
No 337
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=94.97 E-value=0.025 Score=37.08 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=30.2
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
++..+||..+|+|+.||+|.++++++.|-+.-.
T Consensus 218 lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~ 250 (260)
T 3kcc_A 218 ITRQEIGQIVGCSRETVGRILKMLEDQNLISAH 250 (260)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEc
Confidence 678999999999999999999999999988643
No 338
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=94.96 E-value=0.041 Score=33.57 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHh-----ccCHHHHHHHHHHHHHhcCCCcccc
Q psy15513 4 AGVRPCVISRQL-----RVSHGCVSKILNRYQETGSIRPGVI 40 (77)
Q Consensus 4 ~G~s~~~iA~rf-----~VS~stv~r~~~r~r~tG~v~pk~~ 40 (77)
..+|+.+|...+ +||.+||||-++.+.+.|-|..-..
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 74 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNF 74 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECS
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 348999999999 8999999999999999999965554
No 339
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=94.95 E-value=0.018 Score=37.35 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=22.4
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|+|+.++|+.+|||++|+++|-+
T Consensus 101 ~~glTQ~elA~~LGvsr~tis~yE~ 125 (170)
T 2auw_A 101 RNNLSLTTAAEALGISRRMVSYYRT 125 (170)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4799999999999999999998744
No 340
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=94.89 E-value=0.0046 Score=41.70 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=0.0
Q ss_pred CCHHHHHHHhccCHHHHHHHHHH
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNR 28 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r 28 (77)
.+..+||+.+|||.+||||-++.
T Consensus 4 ~ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 4 TTMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 46789999999999999999975
No 341
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=94.88 E-value=0.037 Score=33.57 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=31.8
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
+.|+.+||+++++|.++|.+.+++..+.|=+.-..
T Consensus 51 ~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 51 FPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp SCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 48999999999999999999999999999986543
No 342
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=94.85 E-value=0.022 Score=38.07 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=30.6
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCCCcccc
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVI 40 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~ 40 (77)
|-+++|++||||..||.+-+++..+.|-+.. +.
T Consensus 38 se~~La~~~~vSr~tvr~Al~~L~~~G~i~~-~g 70 (248)
T 3f8m_A 38 AEREIAEQFEVARETVRQALRELLIDGRVER-RG 70 (248)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE-ET
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe-CC
Confidence 7799999999999999999999999999987 54
No 343
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=94.83 E-value=0.0049 Score=42.06 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=0.0
Q ss_pred CCHHHHHHHhccCHHHHHHHHHH
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNR 28 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r 28 (77)
++..+||+++|||.+||||-++.
T Consensus 9 ~ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 9 PTLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
Confidence 47899999999999999999986
No 344
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=94.83 E-value=0.0049 Score=42.00 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=0.0
Q ss_pred CCHHHHHHHhccCHHHHHHHHHH
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNR 28 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r 28 (77)
++..+||+.+|||.+||||-++.
T Consensus 13 ~ti~diA~~agVS~~TVSr~Ln~ 35 (355)
T 3e3m_A 13 VTMRDVAKAAGVSRMTVSRALKK 35 (355)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHhCCCHHHHHHHHCC
Confidence 57889999999999999999974
No 345
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=94.81 E-value=0.025 Score=36.43 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=30.7
Q ss_pred CCCHHHHHHHhccCHH-HHHHHHHHHHHhcCCCcc
Q psy15513 5 GVRPCVISRQLRVSHG-CVSKILNRYQETGSIRPG 38 (77)
Q Consensus 5 G~s~~~iA~rf~VS~s-tv~r~~~r~r~tG~v~pk 38 (77)
.++..++|..+|+|++ ||+|.++++++.|-+.-.
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~ 203 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYK 203 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEec
Confidence 5788999999999995 999999999999988654
No 346
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=94.80 E-value=0.005 Score=41.47 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=0.0
Q ss_pred CCHHHHHHHhccCHHHHHHHHHH
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNR 28 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r 28 (77)
++..+||+.+|||.+||+|-++.
T Consensus 3 ~ti~diA~~agVS~~TVSrvln~ 25 (330)
T 3ctp_A 3 ANIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 46789999999999999999986
No 347
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=94.78 E-value=0.0051 Score=41.89 Aligned_cols=24 Identities=25% Similarity=0.229 Sum_probs=0.0
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHH
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRY 29 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~ 29 (77)
++..+||+++|||.+||||-++..
T Consensus 4 ~ti~diA~~aGVS~~TVSrvLn~~ 27 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQA 27 (349)
T ss_dssp ------------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCC
Confidence 578899999999999999999864
No 348
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=94.77 E-value=0.032 Score=35.73 Aligned_cols=43 Identities=5% Similarity=-0.006 Sum_probs=31.2
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHH-hcCCCccccCCCCCCCCCHH
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQE-TGSIRPGVIGGSKPRVATPD 51 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~-tG~v~pk~~gg~~~~~~~~~ 51 (77)
|...+|++++||+++|++-+++..+ -|.---.+.+ ++-.+|++
T Consensus 17 s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~--~~~~lT~~ 60 (291)
T 3szp_A 17 SYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHA--RKLTLTEA 60 (291)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCEEEET--TEEEECHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCceEeecC--CCcccCHh
Confidence 7889999999999999999999884 4544333222 33446664
No 349
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=94.76 E-value=0.027 Score=39.01 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=29.8
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~p 37 (77)
+|..++|++|+||.+||.|-++..++.|-+.-
T Consensus 20 ~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~ 51 (321)
T 1bia_A 20 HSGEQLGETLGMSRAAINKHIQTLRDWGVDVF 51 (321)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCE
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEE
Confidence 89999999999999999999999999997753
No 350
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=94.74 E-value=0.032 Score=36.47 Aligned_cols=46 Identities=15% Similarity=0.053 Sum_probs=32.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHH-hcCCCccccCCCCCCCCCHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQE-TGSIRPGVIGGSKPRVATPD 51 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~-tG~v~pk~~gg~~~~~~~~~ 51 (77)
+.| |...+|++++||+++|++-+++..+ -|.---.+.+ ++-.+|++
T Consensus 23 ~~g-s~s~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~~--~~~~lT~~ 69 (310)
T 2esn_A 23 RHR-NVGTAASELAISASAFSHALGRLRQGLDDELFLRQG--NRMQPTQR 69 (310)
T ss_dssp HHS-SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEEEET--TEEEECHH
T ss_pred HcC-CHHHHHHHhCCChHHHHHHHHHHHHhhCCcceeecC--CCccccHH
Confidence 344 8889999999999999999999985 4443333222 33345554
No 351
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=94.72 E-value=0.033 Score=36.51 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=33.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHh-cCCCccccCCCCCCCCCHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQET-GSIRPGVIGGSKPRVATPD 51 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~t-G~v~pk~~gg~~~~~~~~~ 51 (77)
+.| |...+|++++||+++|++-+++..+. |.---.+. +++-.+|++
T Consensus 15 ~~g-s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~--~r~~~lT~~ 61 (305)
T 3fxq_A 15 EVG-SLRAAAQLLHLSQPALSAAIQQLEDELKAPLLVRT--KRGVSLTSF 61 (305)
T ss_dssp HHS-CHHHHHHHTTCCHHHHHHHHHHHHHHHTSCSEEEC--SSSEEECHH
T ss_pred HcC-CHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEEec--CCCccCCHh
Confidence 344 88999999999999999999999855 54433322 244456664
No 352
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=94.67 E-value=0.086 Score=31.08 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=40.7
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCC-CCCCHHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKP-RVATPDVERRIEE 58 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~-~~~~~~~~~~i~~ 58 (77)
..|..++|++++++.|+++|.+.+..+.|-|.-.+...+|. -.+|++=.+.+.+
T Consensus 36 ~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l~~ 90 (96)
T 2obp_A 36 PWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALAAQ 90 (96)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHHHH
T ss_pred CcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHHHH
Confidence 38999999999999999999999999999997655422232 3566654444433
No 353
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=94.60 E-value=0.006 Score=40.73 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHHHHHh
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQET 32 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r~r~t 32 (77)
++.|.|...+|++++||+++|++-+++..+.
T Consensus 13 ~~~gls~s~AA~~L~isq~avS~~I~~LE~~ 43 (324)
T 1al3_A 13 VNHNLNVSSTAEGLYTSQPGISKQVRMLEDE 43 (324)
T ss_dssp -------------------------------
T ss_pred HHcccCHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4556789999999999999999999998753
No 354
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=94.56 E-value=0.03 Score=36.61 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=26.4
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHh-cCCCc
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQET-GSIRP 37 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~t-G~v~p 37 (77)
|...+|++++||+++|++-+++..+. |.---
T Consensus 22 s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf 53 (303)
T 3isp_A 22 SFDAAAERLHVTPSAVSQRIKSLEQQVGQVLV 53 (303)
T ss_dssp CHHHHHTTTTCCHHHHHHHHHHHHHHHTSCCE
T ss_pred CHHHHHHHhCCChHHHHHHHHHHHHHhCCeeE
Confidence 78899999999999999999999855 54433
No 355
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=94.55 E-value=0.013 Score=39.55 Aligned_cols=25 Identities=12% Similarity=0.128 Sum_probs=23.4
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|++..++|...|||+|+|++|++
T Consensus 42 ~~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 42 QHNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 4699999999999999999999986
No 356
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=94.55 E-value=0.043 Score=34.09 Aligned_cols=48 Identities=10% Similarity=-0.064 Sum_probs=31.8
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCC-C-ccccCC--CCCCCCCHHHHH
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSI-R-PGVIGG--SKPRVATPDVER 54 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v-~-pk~~gg--~~~~~~~~~~~~ 54 (77)
|...+|+.++||+++|++.+++..+.=.+ - -+..|| +++-.+|++-..
T Consensus 40 S~s~AA~~L~iSqsavS~~I~~LE~~lG~~Lf~R~~~G~~grg~~LT~~G~~ 91 (135)
T 2ijl_A 40 SISAAGRAMDMSYRRAWLLVDALNHMFRQPVICSQRGGKQGGGAALTVFGAE 91 (135)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHBSSCSEEECCC------EEECHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHCCeeEEecCCCCCCCceeECHHHHH
Confidence 88899999999999999999999866333 2 222121 234567765333
No 357
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=94.55 E-value=0.028 Score=35.36 Aligned_cols=21 Identities=5% Similarity=0.205 Sum_probs=20.2
Q ss_pred CHHHHHHHhccCHHHHHHHHH
Q psy15513 7 RPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~ 27 (77)
|+.++|+.+|||++|+++|.+
T Consensus 22 tq~elA~~~Gis~~~i~~~e~ 42 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYT 42 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHHHHhCcCHHHHHHHHh
Confidence 899999999999999999987
No 358
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=94.53 E-value=0.025 Score=33.30 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHhc----cCHHHHHHHHHHHHHhcCCCccccC
Q psy15513 4 AGVRPCVISRQLR----VSHGCVSKILNRYQETGSIRPGVIG 41 (77)
Q Consensus 4 ~G~s~~~iA~rf~----VS~stv~r~~~r~r~tG~v~pk~~g 41 (77)
.+++..+||+.|+ ++.+||++.+++..+.|-|.-.+.|
T Consensus 23 ~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~~ 64 (126)
T 1sd4_A 23 KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSE 64 (126)
T ss_dssp SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeCC
Confidence 4689999999998 5999999999999999999776653
No 359
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=94.35 E-value=0.021 Score=38.68 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
.+++..+||+++|+++|||+|+++-+.+.|=|..-+
T Consensus 44 ~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~ 79 (275)
T 3mq0_A 44 RDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSA 79 (275)
T ss_dssp SCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC
Confidence 468999999999999999999999999999997543
No 360
>1pm6_A Excisionase; antiparallel beta-sheet, winged-helix, CIS-trans-trans triproline, gene regulation; NMR {Enterobacteria phage HK022} SCOP: a.6.1.7
Probab=94.27 E-value=0.035 Score=31.30 Aligned_cols=32 Identities=16% Similarity=0.023 Sum_probs=25.6
Q ss_pred CHHHHHHHh--ccCHHHHHHHHHHHHHhcCC--CccccCC
Q psy15513 7 RPCVISRQL--RVSHGCVSKILNRYQETGSI--RPGVIGG 42 (77)
Q Consensus 7 s~~~iA~rf--~VS~stv~r~~~r~r~tG~v--~pk~~gg 42 (77)
+..|.|+.+ .+|.+||++|.+. |.+ .|.+.|+
T Consensus 4 Tl~EwA~~~~~~~s~~Tl~r~ar~----G~I~Pp~~KvGr 39 (72)
T 1pm6_A 4 TLQEWNARQRRPRSLETVRRWVRE----SRIFPPPVKDGR 39 (72)
T ss_dssp EHHHHHHHSSSCCCHHHHHHHHHH----TCEESCCEECSS
T ss_pred eHHHHHHHhcCCCCHHHHHHHHHC----CCCCCchhhcCC
Confidence 456888887 7999999999775 999 6666675
No 361
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=94.23 E-value=0.096 Score=33.95 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=28.8
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHh-cCCCccccCCCCCCCCCHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQET-GSIRPGVIGGSKPRVATPD 51 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~t-G~v~pk~~gg~~~~~~~~~ 51 (77)
+.| |...+|++|+||+++|++-+++..+. |.---.+.+ +++-.+|++
T Consensus 17 ~~~-s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~-~~~~~lT~~ 64 (306)
T 3fzv_A 17 ECG-SVAEASRKLYIAQPSISTAVKGLEESFGVQLFIRHH-AQGVSLTPA 64 (306)
T ss_dssp HSS-SHHHHHHHHTCCC-CHHHHHHHHHHHC-CCCC----------CCHH
T ss_pred HhC-CHHHHHHHhCCCchHHHHHHHHHHHHhCCeeEeecC-CCCceECHh
Confidence 445 88999999999999999999999865 433333211 243456664
No 362
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=94.16 E-value=0.061 Score=33.44 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHh-----ccCHHHHHHHHHHHHHhcCCCcccc
Q psy15513 4 AGVRPCVISRQL-----RVSHGCVSKILNRYQETGSIRPGVI 40 (77)
Q Consensus 4 ~G~s~~~iA~rf-----~VS~stv~r~~~r~r~tG~v~pk~~ 40 (77)
..+|+.+|...+ +||.+||||-++.+.+.|-|..-..
T Consensus 41 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 82 (150)
T 2xig_A 41 THLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLET 82 (150)
T ss_dssp SCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEe
Confidence 358999999988 8999999999999999999865544
No 363
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=94.13 E-value=0.04 Score=30.37 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=19.2
Q ss_pred CHHHHHHHhccCHHHHHHHHH
Q psy15513 7 RPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~ 27 (77)
+..++|+++|||++++++|-+
T Consensus 29 sq~~lA~~~gis~~~is~~E~ 49 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIET 49 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHc
Confidence 788999999999999999854
No 364
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=94.11 E-value=0.059 Score=33.31 Aligned_cols=58 Identities=12% Similarity=0.067 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc--cCCCCC--C-CCCHHHHHHHHHHHHh
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV--IGGSKP--R-VATPDVERRIEEYKGE 62 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~--~gg~~~--~-~~~~~~~~~i~~~v~~ 62 (77)
.+.|+.++|+++++|.++|.+++++.-+.|=+.-.. ...++. . -++| -.+.|..++++
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~p-L~ekL~~~~~~ 112 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQP-LWGKLYEYIQL 112 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHH-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHH-HHHHHHHHHHH
Confidence 457999999999999999999999999999886532 222222 1 3334 45666666644
No 365
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=94.10 E-value=0.018 Score=34.22 Aligned_cols=25 Identities=8% Similarity=0.068 Sum_probs=21.8
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRY 29 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~ 29 (77)
+++.+.+|+.+||+.|||+||-.-+
T Consensus 23 ~~gq~~vA~~iGV~~StISR~k~~~ 47 (97)
T 1xwr_A 23 MLGTEKTAEAVGVDKSQISRWKRDW 47 (97)
T ss_dssp HHCHHHHHHHHTCCTTTHHHHHHHH
T ss_pred HHhHHHHHHHhCCCHHHHHHHHhhh
Confidence 4678899999999999999997754
No 366
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=93.98 E-value=0.0017 Score=39.23 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=24.8
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHHH
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNRY 29 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r~ 29 (77)
-+.|+|+.++|+++|||+++|++|-+--
T Consensus 2 R~~glTQ~eLA~~~Gvs~~~is~~E~G~ 29 (122)
T 1nr3_A 2 RERGWSQKKIARELKTTRQNVSAIERKA 29 (122)
T ss_dssp CCCSCSSCSTHHHHHHCCSSSCCHHHHH
T ss_pred cccCCCHHHHHHHhCCCHHHHHHHHcCC
Confidence 4579999999999999999999997753
No 367
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=93.98 E-value=0.0098 Score=40.00 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=0.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNR 28 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r 28 (77)
+.|+|..++|+++|||++|+++|.+-
T Consensus 41 ~~g~t~~~la~~~g~s~~~is~~e~g 66 (311)
T 4ich_A 41 SRPGAQREFAAAIGLDESKLSKSLNG 66 (311)
T ss_dssp --------------------------
T ss_pred HCCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 47999999999999999999999764
No 368
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=93.87 E-value=0.01 Score=38.15 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=0.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHh
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQET 32 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~t 32 (77)
+.| |...+|++++||+++|++-+++..+.
T Consensus 11 ~~~-s~s~AA~~L~isq~avS~~i~~LE~~ 39 (300)
T 3mz1_A 11 ETG-NFTRASASLNMPKATVTNLIQGLEAH 39 (300)
T ss_dssp ------------------------------
T ss_pred hcC-CHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 445 88899999999999999999998854
No 369
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=93.82 E-value=0.054 Score=36.14 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=23.5
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNR 28 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r 28 (77)
+.|++..+||++||+|.++|+++++-
T Consensus 132 ~~g~t~~~iA~~lG~s~~~V~~~l~l 157 (230)
T 1vz0_A 132 EMGLTQEEVARRVGKARSTVANALRL 157 (230)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHG
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 46899999999999999999998765
No 370
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=93.78 E-value=0.077 Score=32.56 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHh-----ccCHHHHHHHHHHHHHhcCCCcccc
Q psy15513 4 AGVRPCVISRQL-----RVSHGCVSKILNRYQETGSIRPGVI 40 (77)
Q Consensus 4 ~G~s~~~iA~rf-----~VS~stv~r~~~r~r~tG~v~pk~~ 40 (77)
..+|+.+|...+ +||.+||||-++.+.+.|-|..-..
T Consensus 28 ~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 69 (139)
T 3mwm_A 28 EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRT 69 (139)
T ss_dssp SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 347899998888 7999999999999999999865544
No 371
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=93.75 E-value=0.011 Score=39.06 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=0.0
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHHHHHh
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQET 32 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r~r~t 32 (77)
++.| |...+|++++||+++|++-+++..+.
T Consensus 13 a~~g-s~s~AA~~L~isq~avS~~I~~LE~~ 42 (312)
T 2h9b_A 13 VEEQ-SFTKAADKLCIAQPPLSRQIQNLEEE 42 (312)
T ss_dssp -------------------------------
T ss_pred HHhC-CHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3455 88899999999999999999998754
No 372
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=93.74 E-value=0.038 Score=35.20 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=27.5
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCC
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGG 42 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg 42 (77)
++..|+|+.||||.++|++|++. |.+.+-+.|+
T Consensus 32 LTv~EVAe~LgVs~srV~~LIr~----G~L~AVr~Gr 64 (148)
T 2kfs_A 32 YDLPRVAELLGVPVSKVAQQLRE----GHLVAVRRAG 64 (148)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHT----TSCCCEEETT
T ss_pred EcHHHHHHHhCCCHHHHHHHHHC----CCceEEEECC
Confidence 57789999999999999999765 8887766654
No 373
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=93.67 E-value=0.2 Score=29.41 Aligned_cols=60 Identities=12% Similarity=-0.060 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHHHHHh
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~tl~El~~~L 75 (77)
...+..++|+.+|||.++.++.+++ +| +.|..- ....-......++ .+++.++.||+..+
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~---~G-~s~~~~-------~~~~Rl~~A~~lL-~~~~~si~eIA~~~ 81 (120)
T 3mkl_A 22 HEWTLARIASELLMSPSLLKKKLRE---EE-TSYSQL-------LTECRMQRALQLI-VIHGFSIKRVAVSC 81 (120)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHH---TT-CCHHHH-------HHHHHHHHHHHHH-TSTTCCHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH---cC-CCHHHH-------HHHHHHHHHHHHH-HcCCCCHHHHHHHH
Confidence 3578999999999999999998765 34 444421 1111122233444 56899999998764
No 374
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=93.49 E-value=0.01 Score=39.64 Aligned_cols=35 Identities=11% Similarity=0.090 Sum_probs=5.5
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccC
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIG 41 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~g 41 (77)
|-+++|++||||..||.+-++...+.|-+...+..
T Consensus 42 se~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~ 76 (247)
T 2ra5_A 42 NEIELAARLGLSRPTVRQAIQSLVDKGLLVRRRGV 76 (247)
T ss_dssp --------------------------CEEEEEC--
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCc
Confidence 67889999999999999999999999999766543
No 375
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=93.48 E-value=0.09 Score=33.23 Aligned_cols=35 Identities=11% Similarity=0.068 Sum_probs=30.9
Q ss_pred HHHHHHHhc--------------cCHHHHHHHHHHHHHhcCCCccccCC
Q psy15513 8 PCVISRQLR--------------VSHGCVSKILNRYQETGSIRPGVIGG 42 (77)
Q Consensus 8 ~~~iA~rf~--------------VS~stv~r~~~r~r~tG~v~pk~~gg 42 (77)
.+++|+.|| ||.++|.+-++++...|-|...+.+|
T Consensus 70 ~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~~G 118 (150)
T 2v7f_A 70 IERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKG 118 (150)
T ss_dssp HHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred HHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCCCc
Confidence 388999999 99999999999999999998775433
No 376
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=93.48 E-value=0.067 Score=33.55 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=28.9
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCC
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v 35 (77)
..|.|..+||+.+++|.+||...+++.++.=.+
T Consensus 167 ~~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~ 199 (215)
T 1a04_A 167 AQGLPNKMIARRLDITESTVKVHVKHMLKKMKL 199 (215)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999998875433
No 377
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=93.42 E-value=0.073 Score=33.12 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
++.|.++||++.|||++|+|++.+
T Consensus 27 ~~~s~~~IA~~aGvs~~tiY~~F~ 50 (202)
T 2d6y_A 27 AGARIDRIAAEARANKQLIYAYYG 50 (202)
T ss_dssp TSCCHHHHHHHHTCCHHHHHHHHS
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcC
Confidence 358999999999999999998753
No 378
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=93.37 E-value=0.069 Score=32.60 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+++|.++||++-|||++|+++..
T Consensus 26 ~~~t~~~IA~~agvs~~tlY~~F 48 (192)
T 2zcm_A 26 DGTTLDDISKSVNIKKASLYYHY 48 (192)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHT
T ss_pred ccCCHHHHHHHhCCChHHHHHHC
Confidence 35899999999999999999753
No 379
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=93.36 E-value=0.076 Score=32.42 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
++.|..+||++-|||++|+|+..+
T Consensus 22 ~~~s~~~IA~~agvsk~t~Y~~F~ 45 (190)
T 3vpr_A 22 EATSVQDLAQALGLSKAALYHHFG 45 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHS
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcC
Confidence 458999999999999999998754
No 380
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=93.34 E-value=0.015 Score=38.86 Aligned_cols=30 Identities=10% Similarity=0.175 Sum_probs=0.0
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHHHHHh
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQET 32 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r~r~t 32 (77)
++.| |...+|++++||+++|++-+++..+.
T Consensus 13 ae~g-S~s~AA~~L~isq~avS~~I~~LE~~ 42 (313)
T 2h98_A 13 VEEQ-SISKAAEKLCIAQPPLSRQIQKLEEE 42 (313)
T ss_dssp -------------------------------
T ss_pred HHhC-CHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 3455 88899999999999999999997743
No 381
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=93.23 E-value=0.057 Score=31.21 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=19.9
Q ss_pred CCCHHHHHHHh---c-------cCHHHHHHHHHHH
Q psy15513 5 GVRPCVISRQL---R-------VSHGCVSKILNRY 29 (77)
Q Consensus 5 G~s~~~iA~rf---~-------VS~stv~r~~~r~ 29 (77)
..+..+|+..| | ||.+||++|+++.
T Consensus 93 ~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~~ 127 (128)
T 1pdn_C 93 GMFSWEIREKLIREGVCDRSTAPSVSAISRLVRGR 127 (128)
T ss_dssp TCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC---
T ss_pred chHHHHHHHHHHHcCCccccCCcCHHHHHHHHHhc
Confidence 48999999999 7 5999999999863
No 382
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=93.23 E-value=0.047 Score=33.13 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=21.9
Q ss_pred CCCHHHHHHHh--------c--cCHHHHHHHHHHHHH
Q psy15513 5 GVRPCVISRQL--------R--VSHGCVSKILNRYQE 31 (77)
Q Consensus 5 G~s~~~iA~rf--------~--VS~stv~r~~~r~r~ 31 (77)
+.+..+|+..| | ||.+||++|+++...
T Consensus 108 ~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~ 144 (149)
T 1k78_A 108 TMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQ 144 (149)
T ss_dssp TCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC--
T ss_pred chhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHhc
Confidence 47889999988 6 899999999987654
No 383
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=93.23 E-value=0.013 Score=39.49 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=32.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCc
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~p 37 (77)
...++..++|+.||+|++||++-++...+.|-|..
T Consensus 23 ~g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 23 CMECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp TTTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 34588999999999999999999999999999976
No 384
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=93.16 E-value=0.078 Score=32.58 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
++.|..+||++-|||++|+|++.+
T Consensus 31 ~~~t~~~IA~~agvsk~tlY~~F~ 54 (192)
T 2fq4_A 31 KAVTVDKIAERAKVSKATIYKWWP 54 (192)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred ccccHHHHHHHcCCCHHHHHHHCC
Confidence 358999999999999999999753
No 385
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=93.14 E-value=0.079 Score=33.78 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=28.8
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCC
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETGSI 35 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v 35 (77)
..|+|..+||+.+++|.+||...+++.++.=.+
T Consensus 162 ~~g~s~~eIa~~l~is~~TV~~hi~~l~~KL~~ 194 (225)
T 3c3w_A 162 SEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 194 (225)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred HCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 468999999999999999999999998875433
No 386
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=93.02 E-value=0.094 Score=36.54 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=32.2
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcC-CCccccCCCC
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGS-IRPGVIGGSK 44 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~-v~pk~~gg~~ 44 (77)
+|-.++|++||||.++|.|-++..++.|- +...+..|.+
T Consensus 20 ~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~~~~GY~ 59 (323)
T 3rkx_A 20 ISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNHKGHL 59 (323)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEETTTEEE
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEeCCCeEE
Confidence 89999999999999999999999999997 4433333443
No 387
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=93.02 E-value=0.075 Score=31.80 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=20.0
Q ss_pred CCCHHHHHHHhccCHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+.|..+||++.|||++|+++..
T Consensus 24 ~~t~~~Ia~~agvs~~t~Y~~F 45 (170)
T 3egq_A 24 EVSIEEIAREAKVSKSLIFYHF 45 (170)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHC
T ss_pred cCcHHHHHHHhCCCchhHHHHc
Confidence 4899999999999999999864
No 388
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=92.97 E-value=0.14 Score=29.57 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRI 56 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i 56 (77)
.|++++++|..+++|.+++.+.+....+.|=|.-.. ++ -.+|+.-.+.+
T Consensus 19 ~~~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~-~~---~~LT~kG~~~l 67 (95)
T 1r7j_A 19 SGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEG-KQ---YMLTKKGEELL 67 (95)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TE---EEECHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEC-Ce---eEEChhHHHHH
Confidence 358999999999999999999999999999997663 22 45666544433
No 389
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=92.95 E-value=0.072 Score=33.09 Aligned_cols=37 Identities=14% Similarity=0.345 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHh-----ccCHHHHHHHHHHHHHhcCCCcccc
Q psy15513 4 AGVRPCVISRQL-----RVSHGCVSKILNRYQETGSIRPGVI 40 (77)
Q Consensus 4 ~G~s~~~iA~rf-----~VS~stv~r~~~r~r~tG~v~pk~~ 40 (77)
..+|+.+|...+ +||.+||||-++.+.+.|-|..-..
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 73 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHF 73 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 347899999988 8999999999999999999865543
No 390
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=92.93 E-value=0.089 Score=32.10 Aligned_cols=23 Identities=13% Similarity=-0.019 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|..+||++-|||++|+++..
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F 53 (202)
T 3lwj_A 31 YNTSIRDIIALSEVGTGTFYNYF 53 (202)
T ss_dssp TTCCHHHHHHHHCSCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCchhHHHHc
Confidence 35899999999999999999853
No 391
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=92.91 E-value=0.089 Score=31.69 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|.++||++.|||++|+++..
T Consensus 28 ~~~tv~~Ia~~agvs~~t~Y~~F 50 (195)
T 3ppb_A 28 HGTSTATIAREAGVATGTLFHHF 50 (195)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCChhHHHHHc
Confidence 35899999999999999999853
No 392
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=92.87 E-value=0.019 Score=38.10 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=0.0
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHh
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQET 32 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~t 32 (77)
+.| |...+|++|+||+++|++-+++..+.
T Consensus 27 ~~g-s~t~AA~~L~isq~avS~~I~~LE~~ 55 (315)
T 1uth_A 27 LDR-SVSTAGEKLGLTQPAVSNSLKRLRTA 55 (315)
T ss_dssp ------------------------------
T ss_pred HcC-CHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 445 78899999999999999999998754
No 393
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=92.84 E-value=0.019 Score=36.35 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=0.0
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCcc
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk 38 (77)
-++..++|..+|+|+.||+|.++++++.|-+.-.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~~~ 197 (213)
T 1o5l_A 164 PVTLEELSRLFGCARPALSRVFQELEREGYIEKH 197 (213)
T ss_dssp ----------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEEEc
Confidence 3678899999999999999999999999988643
No 394
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=92.84 E-value=0.094 Score=31.76 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
.+.|..+||++.|||++|+|+..
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F 53 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYY 53 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred CCCCHHHHHHHhCCCHHHHHHHc
Confidence 57899999999999999999864
No 395
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=92.83 E-value=0.081 Score=32.05 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
++.|.++||++-|||++|++++..
T Consensus 27 ~~~t~~~Ia~~agvs~~t~Y~~F~ 50 (206)
T 3dew_A 27 YGVSIRELAQAAGASISMISYHFG 50 (206)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHSC
T ss_pred ccCcHHHHHHHhCCCHHHHHHHcC
Confidence 358999999999999999998743
No 396
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=92.83 E-value=0.082 Score=31.82 Aligned_cols=23 Identities=4% Similarity=0.039 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+|.|.++||++-|||++|+++..
T Consensus 29 ~~~t~~~IA~~agvs~~t~Y~~F 51 (191)
T 3on4_A 29 NAFSFKDIATAINIKTASIHYHF 51 (191)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCcchhhhcC
Confidence 35899999999999999999753
No 397
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=92.79 E-value=0.095 Score=32.08 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+++|.++||++-|||++|++++.
T Consensus 33 ~~~ti~~Ia~~agvs~~t~Y~~F 55 (220)
T 3lhq_A 33 SATSLAEIANAAGVTRGAIYWHF 55 (220)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCceeehhhc
Confidence 35899999999999999999863
No 398
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=92.77 E-value=0.097 Score=31.80 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+|+|.++||++-|||++|+++..
T Consensus 27 ~~~t~~~IA~~Agvs~~tly~~F 49 (194)
T 3dpj_A 27 AQTSFVDISAAVGISRGNFYYHF 49 (194)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred ccCCHHHHHHHHCCChHHHHHHc
Confidence 46899999999999999999864
No 399
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=92.75 E-value=0.095 Score=32.36 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=20.2
Q ss_pred CCCHHHHHHHhccCHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+.|.++||++-|||++|++++.
T Consensus 37 ~~t~~~IA~~agvs~~t~Y~~F 58 (218)
T 3gzi_A 37 QVSIREIASLAGTDPGLIRYYF 58 (218)
T ss_dssp CCCHHHHHHHHTSCTHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHc
Confidence 5899999999999999999875
No 400
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=92.73 E-value=0.1 Score=31.33 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|..+||++-|||++|+++..
T Consensus 27 ~~~ti~~Ia~~agvs~~t~Y~~F 49 (188)
T 3qkx_A 27 NQLSMLKLAKEANVAAGTIYLYF 49 (188)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHS
T ss_pred ccCCHHHHHHHhCCCcchHHHHc
Confidence 35899999999999999999753
No 401
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=92.71 E-value=0.1 Score=31.68 Aligned_cols=23 Identities=17% Similarity=0.030 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|.++||++.|||++|+++..
T Consensus 36 ~~~s~~~Ia~~agvs~~t~Y~~F 58 (206)
T 3kz9_A 36 GRGGHADIAEIAQVSVATVFNYF 58 (206)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHC
T ss_pred ccccHHHHHHHhCCCHHHHHHHc
Confidence 35899999999999999999863
No 402
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=92.67 E-value=0.06 Score=32.98 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=20.2
Q ss_pred CCCHHHHHHHhccCHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~ 26 (77)
|.|.++||++-|||++|++++.
T Consensus 38 ~~s~~~IA~~aGvs~~tlY~~F 59 (212)
T 3loc_A 38 GTRLEQIAELAGVSKTNLLYYF 59 (212)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHS
T ss_pred cCCHHHHHHHHCcCHHHHhhhC
Confidence 5899999999999999999865
No 403
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=92.67 E-value=0.26 Score=34.57 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=33.2
Q ss_pred CCHHHHHHHh--ccCHHHHHHHHHHHHHhcCCCccccCCC
Q psy15513 6 VRPCVISRQL--RVSHGCVSKILNRYQETGSIRPGVIGGS 43 (77)
Q Consensus 6 ~s~~~iA~rf--~VS~stv~r~~~r~r~tG~v~pk~~gg~ 43 (77)
++.+++|++| +||.+||.+=++...+.|-+. +++||.
T Consensus 37 V~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~-r~HgsA 75 (338)
T 1stz_A 37 VSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIY-QPHTSA 75 (338)
T ss_dssp BCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEE-CCSSCS
T ss_pred ccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE-EccCcc
Confidence 7889999999 999999999999999999887 477764
No 404
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=92.64 E-value=0.12 Score=32.09 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=27.7
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhc
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETG 33 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG 33 (77)
..|.+..+||..+++|.+||...+++.++.=
T Consensus 155 ~~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl 185 (208)
T 1yio_A 155 IRGLMNKQIAGELGIAEVTVKVHRHNIMQKL 185 (208)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HcCCcHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999888754
No 405
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=92.58 E-value=0.11 Score=31.51 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
.+.|..+||++-|||++|+++..
T Consensus 21 ~~~s~~~Ia~~agvskgtlY~~F 43 (179)
T 2eh3_A 21 QGTSVEEIVKRANLSKGAFYFHF 43 (179)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCcHHHHHHc
Confidence 35899999999999999998753
No 406
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=92.53 E-value=0.43 Score=27.90 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=39.5
Q ss_pred HHHHHHh--ccCHHHHHHHHHHHHHhcCCCccccCCCCC-CCCCHHHHHHHHHHHH
Q psy15513 9 CVISRQL--RVSHGCVSKILNRYQETGSIRPGVIGGSKP-RVATPDVERRIEEYKG 61 (77)
Q Consensus 9 ~~iA~rf--~VS~stv~r~~~r~r~tG~v~pk~~gg~~~-~~~~~~~~~~i~~~v~ 61 (77)
.+++++| .+|.++++..+++..+.|-|.... |+++. -.+|++=.+.+.++.+
T Consensus 32 ~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~-~~~rk~Y~iT~~Gr~~l~~~~~ 86 (99)
T 2co5_A 32 SEILKRFDIDISDGVLYPLIDSLIDDKILREEE-APDGKVLFLTEKGMKEFEELHE 86 (99)
T ss_dssp HHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEEC-CTTSCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEee-CCCcEEEEECHHHHHHHHHHHH
Confidence 5677887 599999999999999999998766 43333 4677776666666654
No 407
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=92.53 E-value=0.071 Score=32.35 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=20.6
Q ss_pred CCCHHHHHHHhccCHHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|..+||++-|||++|++++..
T Consensus 34 ~~t~~~IA~~agvs~~t~Y~~F~ 56 (191)
T 4aci_A 34 GATVRRLEEATGKSRGAIFHHFG 56 (191)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHHS
T ss_pred cCCHHHHHHHHCCCchHHHHHCC
Confidence 48999999999999999998753
No 408
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=92.52 E-value=0.096 Score=31.49 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|.++||++-|||++|+++..
T Consensus 27 ~~~ti~~Ia~~agvs~~t~Y~~F 49 (194)
T 2g7s_A 27 NSFSYADISQVVGIRNASIHHHF 49 (194)
T ss_dssp GGCCHHHHHHHHCCCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCchHHHHHc
Confidence 35899999999999999999863
No 409
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=92.51 E-value=0.11 Score=31.84 Aligned_cols=23 Identities=4% Similarity=-0.060 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|..+||++.|||++|++++.
T Consensus 23 ~~~t~~~Ia~~agvs~~t~Y~~F 45 (185)
T 2yve_A 23 ETLSYDSLAEATGLSKSGLIYHF 45 (185)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHC
T ss_pred hhccHHHHHHHhCCChHHHHHhC
Confidence 35899999999999999999864
No 410
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=92.50 E-value=0.11 Score=33.53 Aligned_cols=41 Identities=20% Similarity=0.388 Sum_probs=36.2
Q ss_pred CC-CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCC
Q psy15513 4 AG-VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSK 44 (77)
Q Consensus 4 ~G-~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~ 44 (77)
+| +|..++|+.+|+|+|-|.-.+......|-|..-+.|..+
T Consensus 22 ~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~a 63 (165)
T 2vxz_A 22 DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVA 63 (165)
T ss_dssp TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEE
T ss_pred hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEEccEE
Confidence 45 889999999999999999999999999999888777433
No 411
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=92.49 E-value=0.04 Score=34.09 Aligned_cols=28 Identities=11% Similarity=0.148 Sum_probs=23.7
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQ 30 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r 30 (77)
..|.+..++|+.|++|..||+++++++.
T Consensus 154 ~~~~~~~~ia~~l~is~~tv~~~l~~~~ 181 (184)
T 3rqi_A 154 ENNNNISATARALNMHRRTLQRKLAKKP 181 (184)
T ss_dssp HTTSCHHHHHHHHTSCHHHHHHHHCC--
T ss_pred hccccHHHHHHHcCCcHHHHHHHHHhcC
Confidence 3588999999999999999999988754
No 412
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=92.46 E-value=0.12 Score=31.54 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|.++||++.|||++|+++..
T Consensus 35 ~~~t~~~Ia~~agvs~~t~Y~~F 57 (213)
T 2qtq_A 35 VDISLSELSLRSGLNSALVKYYF 57 (213)
T ss_dssp SCCCHHHHHHHHCCCHHHHHHHH
T ss_pred ccccHHHHHHHhCCChhhHhHhc
Confidence 35899999999999999999865
No 413
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=92.44 E-value=0.11 Score=31.51 Aligned_cols=22 Identities=9% Similarity=-0.022 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHhccCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKI 25 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~ 25 (77)
+++|.++||++-|||++|+++.
T Consensus 33 ~~~ti~~Ia~~agvs~~t~Y~~ 54 (203)
T 3f1b_A 33 HETSMDAIAAKAEISKPMLYLY 54 (203)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHH
T ss_pred ccccHHHHHHHhCCchHHHHHH
Confidence 3589999999999999999986
No 414
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=92.43 E-value=0.096 Score=31.99 Aligned_cols=23 Identities=9% Similarity=0.080 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhccCHHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|.++||++.|||++|+++...
T Consensus 27 ~~t~~~Ia~~agvs~~t~Y~~F~ 49 (195)
T 2dg7_A 27 NVTVTDIAERAGLTRRSYFRYFP 49 (195)
T ss_dssp GCCHHHHHHHTTCCHHHHHHHCS
T ss_pred ccCHHHHHHHhCCCHHHHHHHcC
Confidence 58999999999999999998754
No 415
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=92.42 E-value=0.11 Score=31.81 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|.++||++-|||++|+++..
T Consensus 37 ~~~s~~~Ia~~agvs~~t~Y~~F 59 (212)
T 1pb6_A 37 HGTRLEQIAELAGVSKTNLLYYF 59 (212)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHS
T ss_pred chhhHHHHHHHHCCChhHHHHhC
Confidence 35899999999999999999863
No 416
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=92.42 E-value=0.17 Score=33.95 Aligned_cols=68 Identities=13% Similarity=0.014 Sum_probs=50.8
Q ss_pred CHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHHHHHh
Q psy15513 7 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 7 s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~tl~El~~~L 75 (77)
..++++..+++....+..+++...+.|.+..-..+=.=.+-......+.|.++. +++.+|+.|.++.+
T Consensus 159 ~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~~~~~~~~~~~~~~~l~~~~-~~~~it~a~~Rd~l 226 (258)
T 1lva_A 159 SFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYWHRQALGEAREVIKNLA-STGPFGLAEARDAL 226 (258)
T ss_dssp BHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBEEEHHHHHHHHHHHHHHH-TTSCBCHHHHHHHH
T ss_pred CHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCCeEEcHHHHHHHHHHHHHHH-hcCCcCHHHHHHHh
Confidence 468999999999999999999999999998764221111222233455566777 79999999999986
No 417
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=92.40 E-value=0.1 Score=31.78 Aligned_cols=23 Identities=4% Similarity=0.070 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+++|.++||++.|||++|+++..
T Consensus 36 ~~~ti~~Ia~~agvs~~t~Y~~F 58 (208)
T 3cwr_A 36 AAMTMEGVASEAGIAKKTLYRFA 58 (208)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHC
T ss_pred HhccHHHHHHHhCCCHHHHHHHc
Confidence 45899999999999999999874
No 418
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=92.38 E-value=0.11 Score=32.11 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+|.|..+||++-|||++|+|++.
T Consensus 29 ~~~s~~~IA~~aGvs~~t~Y~~F 51 (210)
T 3vib_A 29 ARTSLNEIAQAAGVTRDALYWHF 51 (210)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHC
T ss_pred ccCCHHHHHHHHCcCHHHHHHHC
Confidence 45899999999999999999863
No 419
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=92.33 E-value=0.12 Score=31.70 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|.++||++.|||++|+++..
T Consensus 33 ~~~ti~~IA~~agvs~~t~Y~~F 55 (212)
T 3knw_A 33 VGVGLQEILKTSGVPKGSFYHYF 55 (212)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCChHHHHHHC
Confidence 35899999999999999999854
No 420
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=92.33 E-value=0.11 Score=32.21 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
++.|.++||++-|||++|+|+...
T Consensus 34 ~~~s~~~IA~~agvs~~t~Y~~F~ 57 (221)
T 3c2b_A 34 KALTTSGLARAANCSKESLYKWFG 57 (221)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHHS
T ss_pred ccCCHHHHHHHhCCCHHHHHHhCC
Confidence 358999999999999999999764
No 421
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=92.32 E-value=0.12 Score=31.23 Aligned_cols=22 Identities=14% Similarity=0.015 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHhccCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKI 25 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~ 25 (77)
+++|.++||++-|||++|+++.
T Consensus 21 ~~~ti~~Ia~~agvs~~t~Y~~ 42 (194)
T 3bqz_B 21 NATTTGEIVKLSESSKGNLYYH 42 (194)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchhHHHh
Confidence 3589999999999999999976
No 422
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=92.28 E-value=0.26 Score=31.13 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=44.7
Q ss_pred cCCCCHHHHHHHh--------ccCHHHHHHHHHHHHHhcCCCcccc--CC-C-CC-CCCCHHHHHHHHHHHHhC
Q psy15513 3 AAGVRPCVISRQL--------RVSHGCVSKILNRYQETGSIRPGVI--GG-S-KP-RVATPDVERRIEEYKGEN 63 (77)
Q Consensus 3 ~~G~s~~~iA~rf--------~VS~stv~r~~~r~r~tG~v~pk~~--gg-~-~~-~~~~~~~~~~i~~~v~~~ 63 (77)
+..++.-++++.| ++|+++++.-+++..+.|-|..... +| + +. -.+|+.-.+.+.+++.+.
T Consensus 13 ~~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~~~~~~~ 86 (179)
T 1yg2_A 13 TRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWFDQP 86 (179)
T ss_dssp HCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHHHHHHhCc
Confidence 3447888999999 7999999999999999999976542 22 2 22 467777777777777654
No 423
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=92.26 E-value=0.12 Score=32.16 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
.|.|..+||++-|||++|+|+..+
T Consensus 30 ~~~s~~~IA~~aGvskgtlY~~F~ 53 (210)
T 2wui_A 30 GTTAMADLADAAGVSRGAVYGHYK 53 (210)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred cccCHHHHHHHhCCCHHHHHHHcC
Confidence 358999999999999999998754
No 424
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=92.24 E-value=0.075 Score=31.93 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.9
Q ss_pred CCCHHHHHHHhccCHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~ 26 (77)
|.|.++||++-|||++|++++.
T Consensus 34 ~~ti~~Ia~~agvs~~t~Y~~F 55 (156)
T 3ljl_A 34 KMSYTTLSQQTGVSRTGISHHF 55 (156)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHC
T ss_pred hcCHHHHHHHHCCCHHHHHHHC
Confidence 4899999999999999999864
No 425
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=92.23 E-value=0.12 Score=31.67 Aligned_cols=22 Identities=5% Similarity=0.025 Sum_probs=19.9
Q ss_pred CCCHHHHHHHhccCHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++|..+||++-|||++|+|++.
T Consensus 51 ~~tv~~Ia~~agvs~~t~Y~~F 72 (218)
T 3dcf_A 51 ATSLDDIADRIGFTKPAIYYYF 72 (218)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHC
T ss_pred cCcHHHHHHHhCCCHHHHHHHc
Confidence 5899999999999999999754
No 426
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=92.14 E-value=0.084 Score=31.94 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.7
Q ss_pred CCCHHHHHHHhccCHHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
++|.++||++.|||++|+++..+
T Consensus 27 ~~t~~~IA~~agvs~~tlY~~F~ 49 (186)
T 2jj7_A 27 GTSIQEIAKEAKVNVAMASYYFN 49 (186)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHHS
T ss_pred cCCHHHHHHHhCCChhhhhhhcC
Confidence 48999999999999999999654
No 427
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=92.14 E-value=0.13 Score=32.21 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+|.|..+||++-|||++|+|+..
T Consensus 43 ~~~s~~~IA~~aGvskgtlY~yF 65 (214)
T 2oer_A 43 QRFTTARVAERAGVSIGSLYQYF 65 (214)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHC
T ss_pred ccccHHHHHHHhCCCCchHHHhC
Confidence 35899999999999999999864
No 428
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=92.13 E-value=0.078 Score=32.32 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHhccCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKI 25 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~ 25 (77)
++.|.++||++.|||++|+++.
T Consensus 30 ~~~s~~~Ia~~agvs~~t~Y~~ 51 (203)
T 3b81_A 30 ENTTLAFIINKLGISKGALYHY 51 (203)
T ss_dssp TTCCHHHHHHHHTCCHHHHHTT
T ss_pred ccCcHHHHHHHhCCCchhHHHH
Confidence 3589999999999999999874
No 429
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=92.06 E-value=0.11 Score=33.10 Aligned_cols=23 Identities=9% Similarity=0.220 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|.++||++.|||++|+|+..
T Consensus 21 ~~~s~~~IA~~aGvs~~tlY~hf 43 (209)
T 3bqy_A 21 DTLTMRRLAQAMDVQAGALYRYF 43 (209)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCcchHHhhc
Confidence 35899999999999999999864
No 430
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=92.04 E-value=0.14 Score=31.57 Aligned_cols=23 Identities=4% Similarity=0.031 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|.++||++-|||++|+++..
T Consensus 30 ~~~ti~~Ia~~agvs~~t~Y~~F 52 (216)
T 3f0c_A 30 CKTTMNEIASDVGMGKASLYYYF 52 (216)
T ss_dssp SSCCHHHHHHHHTCCHHHHHHHC
T ss_pred CcCCHHHHHHHhCCCHHHHHHHc
Confidence 35899999999999999999864
No 431
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=92.04 E-value=0.14 Score=31.73 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+|.|..+||++-|||++|+|+..+
T Consensus 30 ~~ts~~~IA~~aGvsk~tlY~~F~ 53 (202)
T 2i10_A 30 EGTSITDLTKALGINPPSLYAAFG 53 (202)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred ccCCHHHHHHHhCCChHHHHHHhC
Confidence 468999999999999999998764
No 432
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=92.00 E-value=0.12 Score=32.02 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+|.|.++||++-|||++|+++..
T Consensus 22 ~~~s~~~IA~~Agvs~~t~Y~~F 44 (212)
T 3rh2_A 22 RTITTNHIAAHLDISPGNLYYHF 44 (212)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCHHHHHHHC
Confidence 35899999999999999999863
No 433
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=92.00 E-value=0.14 Score=31.77 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
++.|.++||++-|||++|+|++..
T Consensus 38 ~~~s~~~IA~~aGvs~~tlY~~F~ 61 (215)
T 2hku_A 38 EGVPITQICAAAGAHPNQVTYYYG 61 (215)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHHS
T ss_pred CCcCHHHHHHHhCCCHHHHHHHcC
Confidence 368999999999999999998643
No 434
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=91.99 E-value=0.15 Score=31.69 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|..+||++-|||++|+|+..
T Consensus 31 ~~ts~~~IA~~aGvsk~tlY~~F 53 (211)
T 3bhq_A 31 DGTSMEEIATKAGASKQTVYKHF 53 (211)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHc
Confidence 46899999999999999999865
No 435
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=91.93 E-value=0.12 Score=31.71 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=20.1
Q ss_pred CCCHHHHHHHhccCHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+.|..+||++-|||++|+|++.
T Consensus 28 ~~t~~~IA~~agvs~~tlY~~F 49 (199)
T 2o7t_A 28 SLTMENIAEQAGVGVATLYRNF 49 (199)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHC
T ss_pred cCCHHHHHHHhCCCHHHHHHHc
Confidence 5899999999999999999864
No 436
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=91.90 E-value=0.12 Score=32.80 Aligned_cols=31 Identities=23% Similarity=0.187 Sum_probs=27.7
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHhc
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQETG 33 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG 33 (77)
..|.+..+||+.+++|..||...+++.++.=
T Consensus 172 ~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL 202 (225)
T 3klo_A 172 GSGASNIEIADKLFVSENTVKTHLHNVFKKI 202 (225)
T ss_dssp TTTCCHHHHHHHTTCCHHHHHHHHHHHTTTS
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999988643
No 437
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=91.89 E-value=0.13 Score=33.68 Aligned_cols=24 Identities=8% Similarity=0.217 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
++.|.++||+++|||++|+|+...
T Consensus 25 ~~~S~r~IA~~aGvs~~tlY~hF~ 48 (234)
T 2opt_A 25 DALSMRRLAQELKTGHASLYAHVG 48 (234)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHHC
T ss_pred cccCHHHHHHHHCCChhHHHHHcC
Confidence 358999999999999999999753
No 438
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=91.88 E-value=0.14 Score=31.62 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|..+||++-|||++|+++..
T Consensus 33 ~~~s~~~IA~~agvs~~tlY~~F 55 (204)
T 2ibd_A 33 RATTVRDIADAAGILSGSLYHHF 55 (204)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHC
T ss_pred hhcCHHHHHHHhCCCchhHHHhc
Confidence 46899999999999999999863
No 439
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=91.83 E-value=0.12 Score=32.22 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=20.6
Q ss_pred CCCHHHHHHHhccCHHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|..+||++-|||++|+|++..
T Consensus 42 ~~s~~~IA~~AGVsk~tlY~~F~ 64 (207)
T 3bjb_A 42 RVQMHEVAKRAGVAIGTLYRYFP 64 (207)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCS
T ss_pred cCCHHHHHHHhCCCHHHHHHHCC
Confidence 48999999999999999998753
No 440
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=91.80 E-value=0.15 Score=31.57 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|.++||++-|||++|++++.
T Consensus 49 ~~~t~~~IA~~aGvs~~t~Y~~F 71 (222)
T 3bru_A 49 SSVGVDEILKAARVPKGSFYHYF 71 (222)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred CcCcHHHHHHHhCCCcchhhhhC
Confidence 35899999999999999999864
No 441
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=91.80 E-value=0.097 Score=31.99 Aligned_cols=23 Identities=4% Similarity=0.150 Sum_probs=20.4
Q ss_pred CCCHHHHHHHhccCHHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|.++||++-|||++|+++...
T Consensus 28 ~~t~~~IA~~agvs~~t~Y~~F~ 50 (195)
T 3frq_A 28 EFTLSGVAKEVGLSRAALIQRFT 50 (195)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHHC
T ss_pred cCCHHHHHHHhCCCHHHHHHHcC
Confidence 57999999999999999998653
No 442
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=91.77 E-value=0.13 Score=31.91 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+|.|..+||++-|||++|+++..
T Consensus 28 ~~~s~~~IA~~AGvs~gtlY~~F 50 (203)
T 2np5_A 28 EGASVREVAKRAGVSIGAVQHHF 50 (203)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHC
T ss_pred hhccHHHHHHHhCCCHHHHHHHc
Confidence 35899999999999999999864
No 443
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=91.75 E-value=0.15 Score=31.40 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|..+||++-|||++|+|+..
T Consensus 28 ~~~t~~~Ia~~Agvs~gt~Y~yF 50 (204)
T 3anp_C 28 QETTATEIAKAAHVSRGTFFNYY 50 (204)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHC
T ss_pred ccccHHHHHHHcCCchHHHHHHc
Confidence 35899999999999999999864
No 444
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=91.73 E-value=0.12 Score=32.08 Aligned_cols=23 Identities=17% Similarity=0.123 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
.+.|..+||++-|||++|+|++.
T Consensus 30 ~~~s~~~IA~~aGvskgtlY~~F 52 (210)
T 2xdn_A 30 ARTTLADIAELAGVTRGAIYWHF 52 (210)
T ss_dssp TTCCHHHHHHHHTCCTTHHHHHC
T ss_pred ccCcHHHHHHHHCCChHHHHHHh
Confidence 46899999999999999999864
No 445
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=91.71 E-value=0.14 Score=31.51 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|..+||++-|||++|+|+..
T Consensus 29 ~~~ti~~Ia~~agvs~~t~Y~~F 51 (216)
T 3s5r_A 29 AATTMAEIAASVGVNPAMIHYYF 51 (216)
T ss_dssp TTCCHHHHHHTTTCCHHHHHHHC
T ss_pred ccCCHHHHHHHHCCCHHHHHHHc
Confidence 45899999999999999999863
No 446
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=91.71 E-value=0.15 Score=32.15 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+|.|.++||++-|||++++|++.
T Consensus 33 ~~~s~~~IA~~AGvs~~tlY~~F 55 (208)
T 3v6g_A 33 GGLSHRRVAAEANVPVGSTTYYF 55 (208)
T ss_dssp TCCCHHHHHHHHTSCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCchhHHHHc
Confidence 46899999999999999999864
No 447
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=91.69 E-value=0.12 Score=31.64 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHhccCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKI 25 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~ 25 (77)
+|.|.++||++-|||++|+++.
T Consensus 28 ~~~ti~~IA~~agvs~~t~Y~~ 49 (193)
T 2dg8_A 28 ARVSHRRIAQRAGVPLGSMTYH 49 (193)
T ss_dssp GGCCHHHHHHHHTSCTHHHHHH
T ss_pred hhccHHHHHHHhCCCchhhhee
Confidence 3589999999999999999975
No 448
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=91.68 E-value=0.13 Score=32.00 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|..+||++-|||++|++++.
T Consensus 27 ~~~s~~~IA~~AGvs~gt~Y~yF 49 (206)
T 1vi0_A 27 HQSQVSKIAKQAGVADGTIYLYF 49 (206)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCChhHHHHHc
Confidence 35899999999999999999863
No 449
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=91.64 E-value=0.096 Score=31.72 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHhccCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKI 25 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~ 25 (77)
++.|.++||++-|||++|+++.
T Consensus 26 ~~~t~~~IA~~agvs~~t~Y~~ 47 (199)
T 3qbm_A 26 AGTAISDIMAATGLEKGGIYRH 47 (199)
T ss_dssp TTCCHHHHHHHHTCCHHHHHTT
T ss_pred CcCCHHHHHHHhCCCccHHHHh
Confidence 4689999999999999999874
No 450
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=91.63 E-value=0.16 Score=31.36 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|..+||++-|||++|+++..
T Consensus 29 ~~~s~~~Ia~~Agvskgt~Y~yF 51 (197)
T 2f07_A 29 DKASISDIVKKAGTAQGTFYLYF 51 (197)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCchHHHHhC
Confidence 35899999999999999999864
No 451
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=91.63 E-value=0.13 Score=30.17 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=38.9
Q ss_pred CCHHHHHHH----hccCHHHHHHHHHHHHHhcCCCcccc--CCCCC--CCCCHHHHHHHHHHHHh
Q psy15513 6 VRPCVISRQ----LRVSHGCVSKILNRYQETGSIRPGVI--GGSKP--RVATPDVERRIEEYKGE 62 (77)
Q Consensus 6 ~s~~~iA~r----f~VS~stv~r~~~r~r~tG~v~pk~~--gg~~~--~~~~~~~~~~i~~~v~~ 62 (77)
+.--++++. ++||.+|++..+++..+.|-|..... +|++. -.+|+.-.+.+.++.++
T Consensus 23 ~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~ 87 (108)
T 3l7w_A 23 SYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKE 87 (108)
T ss_dssp EEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHH
Confidence 334455555 69999999999999999999976653 33222 24777666666555433
No 452
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=91.62 E-value=0.12 Score=33.68 Aligned_cols=22 Identities=5% Similarity=0.045 Sum_probs=20.0
Q ss_pred CCCHHHHHHHhccCHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++|.++||++.|||++|+|+..
T Consensus 49 ~~s~~~IA~~aGvs~~tlY~hF 70 (241)
T 2hxi_A 49 TFSVRKLAASLGTDSSSLYRHF 70 (241)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHT
T ss_pred cCCHHHHHHHhCcCHHHHHHHc
Confidence 4899999999999999999854
No 453
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=91.62 E-value=0.14 Score=31.81 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
++.|.++||++-|||++|+|+..+
T Consensus 31 ~~~s~~~IA~~agvs~~t~Y~hF~ 54 (198)
T 3cjd_A 31 ASLRARELARQADCAVGAIYTHFQ 54 (198)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred hhcCHHHHHHHhCCCccHHHHHhC
Confidence 358999999999999999998643
No 454
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=91.61 E-value=0.16 Score=31.32 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|..+||++-|||++|+++..
T Consensus 26 ~~ts~~~IA~~aGvs~gtlY~~F 48 (197)
T 2gen_A 26 DATTIEMIRDRSGASIGSLYHHF 48 (197)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHT
T ss_pred ccCCHHHHHHHHCCChHHHHHHC
Confidence 35899999999999999999864
No 455
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=91.60 E-value=0.16 Score=31.25 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
.|.|.++||++-|||++|++...
T Consensus 29 ~~~s~~~IA~~aGvs~gtlY~yF 51 (194)
T 2nx4_A 29 EAANMRDIATEAGYTNGALSHYF 51 (194)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCcchHHHhC
Confidence 46899999999999999999864
No 456
>1i3j_A I-TEVI, intron-associated endonuclease 1; protein-DNA complex, extended structure, Zn-finger, minor groove helix, helix-turn-helix; 2.20A {Enterobacteria phage T4} SCOP: d.285.1.1 PDB: 1t2t_A
Probab=91.59 E-value=0.16 Score=30.96 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.7
Q ss_pred CCHHHHHHHhccCHHHHHHHHHH
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNR 28 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r 28 (77)
-|+.++|+.|++|.+||.+|++.
T Consensus 84 ~S~~eAar~lg~s~~ti~~~~~~ 106 (116)
T 1i3j_A 84 DCAADAARHFKISSGLVTYRVKS 106 (116)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHC
T ss_pred cCHHHHHHHHCCCchhHHHHHhc
Confidence 37899999999999999999953
No 457
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=91.55 E-value=0.24 Score=33.35 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=26.8
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHHHHHHh
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILNRYQET 32 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~r~r~t 32 (77)
-+|+|..+||..+|+|.+||..++.+-+..
T Consensus 125 ~eg~s~~EIA~~lgis~~tVks~l~rA~~~ 154 (286)
T 3n0r_A 125 LEGFTPTEAAQILDCDFGEVERLIGDAQAE 154 (286)
T ss_dssp TTCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHhCcCHHHHHHHHHHHHhh
Confidence 379999999999999999999999887754
No 458
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=91.55 E-value=0.086 Score=31.78 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=19.3
Q ss_pred CCCHHHHHHHhccCHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKI 25 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~ 25 (77)
+.|.++||++.|||++|+++.
T Consensus 30 ~~ti~~Ia~~agvs~~t~Y~~ 50 (196)
T 3col_A 30 GVSTTKVAKRVGIAQSNVYLY 50 (196)
T ss_dssp GCCHHHHHHHHTSCHHHHHTT
T ss_pred cCCHHHHHHHhCCcHHHHHHH
Confidence 589999999999999999874
No 459
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=91.54 E-value=0.16 Score=31.21 Aligned_cols=22 Identities=14% Similarity=0.224 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHhccCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKI 25 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~ 25 (77)
++.|.++||++.|||++|+++.
T Consensus 31 ~~~ti~~Ia~~agvs~~t~Y~~ 52 (189)
T 3vp5_A 31 HEAKIMHIVKALDIPRGSFYQY 52 (189)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHH
T ss_pred ccccHHHHHHHhCCChHHHHHH
Confidence 3579999999999999999874
No 460
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=91.52 E-value=0.14 Score=31.66 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|..+||++.|||++|+++..
T Consensus 42 ~~~t~~~IA~~agvs~~t~Y~~F 64 (214)
T 2zb9_A 42 AQLTFERVARVSGVSKTTLYKWW 64 (214)
T ss_dssp GGCCHHHHHHHHCCCHHHHHHHC
T ss_pred ccCCHHHHHHHHCCCHHHHHHHC
Confidence 35899999999999999999863
No 461
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=91.50 E-value=0.071 Score=35.77 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=32.5
Q ss_pred ccCCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCc
Q psy15513 2 AAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRP 37 (77)
Q Consensus 2 ~~~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~p 37 (77)
...+++..++|.++++|+++|+..+++..+.|-|.-
T Consensus 175 ~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~ 210 (232)
T 2qlz_A 175 LNGRATVEELSDRLNLKEREVREKISEMARFVPVKI 210 (232)
T ss_dssp HSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEE
T ss_pred hcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEE
Confidence 345689999999999999999999999999998873
No 462
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=91.48 E-value=0.31 Score=27.69 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=39.4
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHHHHHh
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~tl~El~~~L 75 (77)
..+..++|+.+|+|.++.++.+++.. | +.|.. -....-......++. +++.++.|++..+
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~~--g-~s~~~-------~~~~~Rl~~A~~lL~-~~~~si~~iA~~~ 78 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNF--G-IPFQD-------YLLQKRMEKAKLLLL-TTELKNYEIAEQV 78 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHH--S-SCHHH-------HHHHHHHHHHHHHHH-HCCCCHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHH--C-cCHHH-------HHHHHHHHHHHHHHH-CCCCCHHHHHHHh
Confidence 57999999999999999999988743 3 23331 111111222334443 4789999998754
No 463
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=91.46 E-value=0.1 Score=31.77 Aligned_cols=21 Identities=14% Similarity=0.244 Sum_probs=19.3
Q ss_pred CCCHHHHHHHhccCHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKI 25 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~ 25 (77)
+.|.++||++.|||++|+++.
T Consensus 40 ~~t~~~Ia~~agvs~~t~Y~~ 60 (203)
T 3mnl_A 40 AVQMRAVADRADVAVGTLYRY 60 (203)
T ss_dssp HCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCHHHHHHHcCCChhHHHHH
Confidence 489999999999999999985
No 464
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=91.41 E-value=0.1 Score=31.35 Aligned_cols=22 Identities=9% Similarity=0.006 Sum_probs=19.8
Q ss_pred CCCHHHHHHHhccCHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+.|.++||++-|||++|++++.
T Consensus 28 ~~t~~~Ia~~agvs~~t~Y~~F 49 (195)
T 3pas_A 28 ATSVGKIAKAAGLSPATLYIYY 49 (195)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHC
T ss_pred hcCHHHHHHHhCCCchHHHHHc
Confidence 4899999999999999999863
No 465
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=91.39 E-value=0.14 Score=31.45 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
.+.|..+||++-|||++|+|+..
T Consensus 31 ~~~s~~~IA~~aGvs~~tlY~~F 53 (197)
T 2hyt_A 31 ADTSMDDLTAQASLTRGALYHHF 53 (197)
T ss_dssp TTCCHHHHHHHHTCCTTHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHc
Confidence 35899999999999999999864
No 466
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=91.33 E-value=0.17 Score=30.99 Aligned_cols=23 Identities=0% Similarity=0.013 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|..+||++-|||++|+++..
T Consensus 36 ~~~ti~~Ia~~agvs~~t~Y~~F 58 (207)
T 2rae_A 36 DATSVDEVAEASGIARRTLFRYF 58 (207)
T ss_dssp TTSCHHHHHHHTTSCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCcchHhhhC
Confidence 35899999999999999999853
No 467
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=91.28 E-value=0.31 Score=27.90 Aligned_cols=62 Identities=10% Similarity=-0.010 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCC-CcHHHHHHHh
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPA-MFSWEIRDRL 75 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd-~tl~El~~~L 75 (77)
...+..++|+.+|+|.++.++.+++. +| +.|.. -....-.+....++...++ +++.|++..+
T Consensus 17 ~~~~~~~lA~~~~~s~~~l~r~fk~~--~G-~s~~~-------~~~~~Rl~~A~~lL~~~~~~~si~~IA~~~ 79 (108)
T 3mn2_A 17 RPITIEKLTALTGISSRGIFKAFQRS--RG-YSPMA-------FAKRVRLQHAHNLLSDGATPTTVTAAALSC 79 (108)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH--TS-SCHHH-------HHHHHHHHHHHHHHHSSSSCCCHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH--hC-cCHHH-------HHHHHHHHHHHHHHHcCCCCCCHHHHHHHh
Confidence 34789999999999999999998863 33 22321 1111122334455555543 8999998754
No 468
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=91.28 E-value=0.18 Score=34.09 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=22.6
Q ss_pred CCCHHHHHHHhccCHHHHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILNRY 29 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~r~ 29 (77)
..+.+++|..|+||.+||.|++++.
T Consensus 86 ~~t~~~ia~~l~vs~~tV~r~L~~~ 110 (345)
T 3hot_A 86 AQTQKQLAEQLEVSQQAVSNRLREM 110 (345)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHT
T ss_pred cchHHHHHHHHCCCHHHHHHHHHHh
Confidence 3788999999999999999999873
No 469
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=91.27 E-value=0.31 Score=27.95 Aligned_cols=61 Identities=7% Similarity=-0.060 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHHHHHh
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~tl~El~~~L 75 (77)
...+..++|+.+|+|.++.++.+++. +| +.|.. -....-.+....++. +++.++.|++..+
T Consensus 20 ~~~~~~~lA~~~~~S~~~l~r~fk~~--~G-~s~~~-------~~~~~Rl~~A~~lL~-~~~~si~~IA~~~ 80 (108)
T 3oou_A 20 EGMSLKTLGNDFHINAVYLGQLFQKE--MG-EHFTD-------YLNRYRVNYAKEELL-QTKDNLTIIAGKS 80 (108)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH--HS-SCHHH-------HHHHHHHHHHHHHHH-HCCCCHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH--HC-cCHHH-------HHHHHHHHHHHHHHH-cCCCCHHHHHHHc
Confidence 35789999999999999999999864 34 22331 111111222334443 5788999998764
No 470
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=91.25 E-value=0.18 Score=31.93 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+++|..+||++.|||.+|++++.
T Consensus 62 ~~~tv~~IA~~AGvs~~t~Y~~F 84 (229)
T 3bni_A 62 DALSTRAVALRADVPIGSVYRFF 84 (229)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred hhccHHHHHHHHCCCchhHHHHc
Confidence 35899999999999999999853
No 471
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=91.23 E-value=0.17 Score=31.20 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.7
Q ss_pred CCCHHHHHHHhccCHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+.|.++||++.|||++|+|++.
T Consensus 32 ~~t~~~IA~~agvs~~tlY~~F 53 (196)
T 2qwt_A 32 GVPMDEIARRAGVGAGTVYRHF 53 (196)
T ss_dssp TSCHHHHHHHTTSCHHHHHHHC
T ss_pred CCCHHHHHHHhCCCHHHHHHHC
Confidence 4899999999999999999863
No 472
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=91.14 E-value=0.18 Score=31.29 Aligned_cols=22 Identities=5% Similarity=-0.028 Sum_probs=20.1
Q ss_pred CCHHHHHHHhccCHHHHHHHHH
Q psy15513 6 VRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~ 27 (77)
.|.++||++-|||++|++++..
T Consensus 32 ~s~~~IA~~agvs~~tiY~~F~ 53 (224)
T 1t33_A 32 ATTRDIAALAGQNIAAITYYFG 53 (224)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHS
T ss_pred ccHHHHHHHhCCCHHHHHHhcC
Confidence 7999999999999999998764
No 473
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=91.14 E-value=0.18 Score=32.25 Aligned_cols=22 Identities=5% Similarity=0.089 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHhccCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKI 25 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~ 25 (77)
+|.|.++||++.|||++|+++.
T Consensus 42 ~~~s~~~IA~~agvs~~tlY~~ 63 (231)
T 2zcx_A 42 REITLTDIAATVGMHKSALLRY 63 (231)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHh
Confidence 3689999999999999999975
No 474
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=91.11 E-value=0.18 Score=31.62 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+|.|.++||++-|||+++++++.
T Consensus 54 ~~~t~~~IA~~AGvs~~tlY~~F 76 (221)
T 3g7r_A 54 HSVGIDRITAEAQVTRATLYRHF 76 (221)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCHHHHHHHC
Confidence 35899999999999999999854
No 475
>2xpw_A Tetracycline repressor protein class D; transcription, transcription regulator, helix-turn-helix, ME coordination; HET: OTC MES; 1.44A {Escherichia coli} PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A* 2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A ...
Probab=91.09 E-value=0.11 Score=33.01 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=19.9
Q ss_pred CCCHHHHHHHhccCHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+.|.++||+++|||++|+|+..
T Consensus 23 ~~s~~~IA~~~Gvs~~slY~hF 44 (207)
T 2xpw_A 23 GLTTRKLAQKLGIEQPTLYWHV 44 (207)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHC
T ss_pred cCCHHHHHHHhCCCcchHHHhc
Confidence 5899999999999999999853
No 476
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=91.09 E-value=0.17 Score=30.96 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=19.6
Q ss_pred CCCHHHHHHHhccCHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+.|..+||++.|||++|+++..
T Consensus 35 ~~s~~~Ia~~agvs~~t~Y~~F 56 (199)
T 2rek_A 35 DASLEEIARRAGVGSATLHRHF 56 (199)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHC
T ss_pred CCCHHHHHHHhCCchHHHHHHC
Confidence 4799999999999999999754
No 477
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=91.07 E-value=0.11 Score=31.08 Aligned_cols=21 Identities=5% Similarity=-0.110 Sum_probs=19.0
Q ss_pred CCCHHHHHHHhccCHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKI 25 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~ 25 (77)
+.|.++||++.|||++|+++.
T Consensus 32 ~~tv~~Ia~~agvs~~t~Y~~ 52 (177)
T 3kkc_A 32 KITVQDVIGLANVGRSTFYSH 52 (177)
T ss_dssp TCCHHHHHHHHCCCHHHHTTT
T ss_pred HhhHHHHHHHhCCcHhhHHHH
Confidence 479999999999999999874
No 478
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=91.06 E-value=0.079 Score=31.99 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=19.1
Q ss_pred CCCHHHHHHHhccCHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKI 25 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~ 25 (77)
+.|.++||++.|||++|+++.
T Consensus 28 ~~t~~~Ia~~agvs~~t~Y~~ 48 (183)
T 1zk8_A 28 EVTLASLAQTLGVRSPSLYNH 48 (183)
T ss_dssp GCCHHHHHHHHTSCHHHHTTT
T ss_pred ccCHHHHHHHcCCCchHHHHH
Confidence 589999999999999999864
No 479
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=91.04 E-value=0.19 Score=31.51 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|..+||++-|||++|+++..
T Consensus 28 ~~ts~~~IA~~AGvskgtlY~~F 50 (215)
T 1ui5_A 28 ESTTLSEIVAHAGVTKGALYFHF 50 (215)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCchhhHhhC
Confidence 46899999999999999999754
No 480
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=91.02 E-value=0.12 Score=32.06 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHhccCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKI 25 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~ 25 (77)
.|.|.++||++-|||++|+++.
T Consensus 33 ~~~s~~~IA~~agvsk~tlY~y 54 (199)
T 3crj_A 33 ADLTIQRIADEYGKSTAAVHYY 54 (199)
T ss_dssp TTCCHHHHHHHHTSCHHHHHTT
T ss_pred ccCCHHHHHHHhCCChhHHhhh
Confidence 3589999999999999999864
No 481
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=91.01 E-value=0.18 Score=35.67 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=30.1
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
.+..++++.++||.+||.|.++...+.|-+....
T Consensus 312 ~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~ 345 (373)
T 2qc0_A 312 CRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQ 345 (373)
T ss_dssp EEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC-
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEec
Confidence 4677899999999999999999999999998663
No 482
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=90.98 E-value=0.11 Score=31.90 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=18.8
Q ss_pred CCCHHHHHHHhccCHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKI 25 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~ 25 (77)
++|.++||++-|||++|++++
T Consensus 45 ~~t~~~Ia~~agvs~~t~Y~~ 65 (212)
T 3nxc_A 45 RITTAKLAASVGVSEAALYRH 65 (212)
T ss_dssp -CCHHHHHHHTTSCHHHHHTT
T ss_pred hcCHHHHHHHhCCChhHHHHH
Confidence 589999999999999999875
No 483
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=90.92 E-value=0.18 Score=30.90 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+|+|.++||++-|||++|+++..
T Consensus 45 ~~~t~~~Ia~~agvs~~t~Y~~F 67 (217)
T 3mvp_A 45 FNVTTNEIAKKADVSVGTLYAYF 67 (217)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHC
T ss_pred cccCHHHHHHHhCCChhHHHHHc
Confidence 35899999999999999999853
No 484
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=90.92 E-value=0.19 Score=31.74 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=20.9
Q ss_pred CCCHHHHHHHhccCHHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|.++||++-|||++|+++...
T Consensus 59 ~~tv~~IA~~AGvs~~tlY~~F~ 81 (214)
T 2guh_A 59 EITLKDIAEDAGVSAPLIIKYFG 81 (214)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHHS
T ss_pred hcCHHHHHHHhCCCHHHHHHHcC
Confidence 48999999999999999999764
No 485
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=90.91 E-value=0.32 Score=26.37 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=27.9
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCC
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIR 36 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~ 36 (77)
.....+|+.||||.-.|...+++..+.|-+.
T Consensus 26 ldI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 26 LDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp EEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred EeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 5678899999999999999999999999763
No 486
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=90.91 E-value=0.12 Score=31.91 Aligned_cols=22 Identities=14% Similarity=-0.079 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHhccCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKI 25 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~ 25 (77)
.|.|..+||++-|||++|+|++
T Consensus 31 ~~ts~~~IA~~agvs~gtlY~y 52 (205)
T 1rkt_A 31 ELTTMKDVVEESGFSRGGVYLY 52 (205)
T ss_dssp TTCCHHHHHHHHTSCHHHHHTT
T ss_pred ccCCHHHHHHHHCCCcchhhhh
Confidence 4689999999999999999974
No 487
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=90.89 E-value=0.19 Score=31.69 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
++.|..+||++.|||++|+++...
T Consensus 59 ~~~t~~~IA~~Agvs~~t~Y~~F~ 82 (225)
T 2id3_A 59 DALDLGEIARRAGVGKTTVYRRWG 82 (225)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHHC
T ss_pred ccCCHHHHHHHHCCCHHHHHHHCC
Confidence 358999999999999999998753
No 488
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=90.85 E-value=0.13 Score=36.52 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=30.3
Q ss_pred CCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccc
Q psy15513 6 VRPCVISRQLRVSHGCVSKILNRYQETGSIRPGV 39 (77)
Q Consensus 6 ~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~ 39 (77)
.+..++++.++||..|+.+.++...+.|-+....
T Consensus 312 ~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~~~ 345 (373)
T 3eqx_A 312 CRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQ 345 (373)
T ss_dssp EEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC-
T ss_pred ccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEEeC
Confidence 5678899999999999999999999999998653
No 489
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=90.85 E-value=0.099 Score=32.29 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|..+||++.|||++|++++.
T Consensus 30 ~~~s~~~IA~~agvs~~t~Y~~F 52 (212)
T 2ras_A 30 AGLTLSELAARAGISQANLSRYF 52 (212)
T ss_dssp SCCCHHHHHHHHTSCHHHHTTTC
T ss_pred ccCcHHHHHHHhCCCHHHHHHHc
Confidence 45899999999999999998754
No 490
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=90.81 E-value=0.067 Score=36.44 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.8
Q ss_pred cCCCCHHHHHHHhccCHHHHHHHHH
Q psy15513 3 AAGVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 3 ~~G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
+.|....++|+.||||.+|+++.++
T Consensus 279 ~~~gn~~~aA~~Lgi~r~tl~~kl~ 303 (304)
T 1ojl_A 279 KTGGNKTEAARQLGITRKTLLAKLS 303 (304)
T ss_dssp TTTTCHHHHHHHHTSCHHHHHHHTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 4566889999999999999999875
No 491
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=90.78 E-value=0.13 Score=31.87 Aligned_cols=22 Identities=18% Similarity=-0.032 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHhccCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKI 25 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~ 25 (77)
.+.|..+||++-|||++|+++.
T Consensus 28 ~~~s~~~IA~~aGvsk~tlY~~ 49 (203)
T 3cdl_A 28 EITSMDRIAARAEVSKRTVYNH 49 (203)
T ss_dssp TTCCHHHHHHHTTSCHHHHHTT
T ss_pred hhcCHHHHHHHhCCCHHHHHHH
Confidence 3589999999999999999975
No 492
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=90.74 E-value=0.37 Score=27.83 Aligned_cols=61 Identities=13% Similarity=0.052 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHHHHhcCCCccccCCCCCCCCCHHHHHHHHHHHHhCCCCcHHHHHHHh
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAMFSWEIRDRL 75 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~r~tG~v~pk~~gg~~~~~~~~~~~~~i~~~v~~~pd~tl~El~~~L 75 (77)
...+..++|+.+|||.++.++.+++. +| +.|.. -+...-.+....++. +++.++.||+..+
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~--~G-~s~~~-------~~~~~Rl~~A~~lL~-~~~~~i~eIA~~~ 82 (113)
T 3oio_A 22 EPLSTDDIAYYVGVSRRQLERLFKQY--LG-TVPSK-------YYLELRLNRARQLLQ-QTSKSIVQIGLAC 82 (113)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH--TS-SCHHH-------HHHHHHHHHHHHHHH-HCCCCHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH--HC-cCHHH-------HHHHHHHHHHHHHHH-cCCCCHHHHHHHH
Confidence 34889999999999999999998864 23 22321 111111222334444 4789999998764
No 493
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=90.71 E-value=0.14 Score=32.79 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=20.6
Q ss_pred CCCHHHHHHHhccCHHHHHHHHH
Q psy15513 5 GVRPCVISRQLRVSHGCVSKILN 27 (77)
Q Consensus 5 G~s~~~iA~rf~VS~stv~r~~~ 27 (77)
++|.++||++.|||++|+++...
T Consensus 38 ~~t~~~IA~~aGvs~~tlY~~F~ 60 (251)
T 3npi_A 38 DAKLEAIAKKSGMSKRMIHYHFG 60 (251)
T ss_dssp HCCHHHHHHHHCCCHHHHHHHHC
T ss_pred ccCHHHHHHHHCCCHHHHHHHcC
Confidence 58999999999999999998753
No 494
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=90.71 E-value=0.19 Score=31.50 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
++.|.++||++-|||++|+++..
T Consensus 24 ~~~t~~~IA~~Agvs~~t~Y~~F 46 (228)
T 3nnr_A 24 RNITTNHIAAHLAISPGNLYYHF 46 (228)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHC
T ss_pred hhcCHHHHHHHhCCCCccchhcC
Confidence 35899999999999999999853
No 495
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=90.69 E-value=0.35 Score=28.83 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKILNRY 29 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~~r~ 29 (77)
...+..++|..+|+|.++.+|+.+++
T Consensus 92 ~~~sl~~lA~~~g~S~~~f~r~Fk~~ 117 (133)
T 1u8b_A 92 TPVTLEALADQVAMSPFHLHRLFKAT 117 (133)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 46899999999999999999998874
No 496
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=90.65 E-value=0.19 Score=31.37 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHhccCHHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKIL 26 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~~ 26 (77)
+|.|.++||++-|||++|++.+.
T Consensus 28 ~~~s~~~IA~~aGvs~gtlY~yF 50 (209)
T 2gfn_A 28 SAVTTRAVAEESGWSTGVLNHYF 50 (209)
T ss_dssp GGCCHHHHHHHHSSCHHHHHHHT
T ss_pred ccCCHHHHHHHHCCCcchHHhcC
Confidence 35899999999999999999864
No 497
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=90.65 E-value=0.11 Score=31.47 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHhccCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKI 25 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~ 25 (77)
++.|.++||++-|||++|+++.
T Consensus 29 ~~~t~~~IA~~agvs~~tlY~~ 50 (197)
T 3rd3_A 29 SGVGLNEILQSAGVPKGSFYHY 50 (197)
T ss_dssp TTCCHHHHHHHHTCCHHHHTTT
T ss_pred ccCCHHHHHHHhCCChhhHHHH
Confidence 3579999999999999999874
No 498
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=90.63 E-value=0.24 Score=30.52 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=30.1
Q ss_pred CCCHHHHHHHh-----ccCHHHHHHHHHHHHHhcCCCcccc
Q psy15513 5 GVRPCVISRQL-----RVSHGCVSKILNRYQETGSIRPGVI 40 (77)
Q Consensus 5 G~s~~~iA~rf-----~VS~stv~r~~~r~r~tG~v~pk~~ 40 (77)
..|+.+|...+ .||.+||||-+..+.+.|-|..-..
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~ 73 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHL 73 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEe
Confidence 46788888777 7999999999999999998855443
No 499
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=90.59 E-value=0.13 Score=32.55 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHhccCHHHHHHH
Q psy15513 4 AGVRPCVISRQLRVSHGCVSKI 25 (77)
Q Consensus 4 ~G~s~~~iA~rf~VS~stv~r~ 25 (77)
++.|.++||++.|||++|+|+.
T Consensus 35 ~~~s~~~IA~~agvs~~t~Y~~ 56 (216)
T 2oi8_A 35 SALSLNAIAKRMGMSGPALYRY 56 (216)
T ss_dssp TSCCHHHHHHHTTCCHHHHHTT
T ss_pred ccCCHHHHHHHhCCCHHHHHHH
Confidence 4589999999999999999874
No 500
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=90.58 E-value=0.4 Score=27.80 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHh-ccCHHHHHHHHHHHHH
Q psy15513 4 AGVRPCVISRQL-RVSHGCVSKILNRYQE 31 (77)
Q Consensus 4 ~G~s~~~iA~rf-~VS~stv~r~~~r~r~ 31 (77)
.|+|-.+|++.| |..++||..-+++..+
T Consensus 45 t~~Sl~~IG~~fggrdHsTV~ha~~ki~~ 73 (94)
T 1j1v_A 45 TNHSLPEIGDAFGGRDHTTVLHACRKIEQ 73 (94)
T ss_dssp SCCCHHHHHHHTTSCCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 589999999999 8999999999888765
Done!