RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15513
         (77 letters)



>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 123

 Score = 83.0 bits (205), Expect = 3e-23
 Identities = 63/76 (82%), Positives = 71/76 (93%)

Query: 1   MAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYK 60
           MAA G+RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPR+ATP++E RIEEYK
Sbjct: 28  MAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYK 87

Query: 61  GENPAMFSWEIRDRLV 76
             +P MFSWEIR++L+
Sbjct: 88  RSSPGMFSWEIREKLI 103


>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 61

 Score = 73.1 bits (180), Expect = 5e-20
 Identities = 27/38 (71%), Positives = 32/38 (84%)

Query: 39 VIGGSKPRVATPDVERRIEEYKGENPAMFSWEIRDRLV 76
          VIGGSKP+VATP V  +I EYK +NP MF+WEIRDRL+
Sbjct: 1  VIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLL 38


>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 65

 Score = 68.9 bits (169), Expect = 2e-18
 Identities = 24/36 (66%), Positives = 31/36 (86%)

Query: 41 GGSKPRVATPDVERRIEEYKGENPAMFSWEIRDRLV 76
          GGSKPRVATP+V  +I +YK E P++F+WEIRDRL+
Sbjct: 1  GGSKPRVATPEVVSKIAQYKQECPSIFAWEIRDRLL 36


>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 63

 Score = 54.3 bits (131), Expect = 2e-12
 Identities = 31/38 (81%), Positives = 33/38 (86%)

Query: 1  MAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPG 38
          +A  GVRPC ISRQLRVSHGCVSKIL RY ETGSI+PG
Sbjct: 26 LAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPG 63


>d1u1ha2 c.1.22.2 (A:396-760)
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase MetE {Thale cress (Arabidopsis
           thaliana) [TaxId: 3702]}
          Length = 365

 Score = 25.8 bits (56), Expect = 0.50
 Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 35  IRPGVIGGSKPRVATPD-VERRIEE 58
           I PGV     PR+ + + +  R+ +
Sbjct: 298 IGPGVYDIHSPRIPSSEEIADRVNK 322


>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 89

 Score = 24.9 bits (54), Expect = 0.64
 Identities = 8/46 (17%), Positives = 16/46 (34%)

Query: 24 KILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAMFSW 69
          +IL+ YQ+         G   P +   +V  ++         + S 
Sbjct: 36 EILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSE 81


>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 453

 Score = 24.5 bits (53), Expect = 1.4
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 11  ISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDVERRIEEYKGENPAMFSWE 70
           ++  L          L     +G+ +  +   +   V   ++ R +    G  P  F+WE
Sbjct: 176 MNDILNHKMREFCIRLRNLVHSGATKGEI--SATQDVMMEEIFRVVCICLGNPPETFTWE 233

Query: 71  IRD 73
            RD
Sbjct: 234 YRD 236


>d1v8da_ c.140.1.1 (A:) Hypothetical protein TT1679 {Thermus
           thermophilus [TaxId: 274]}
          Length = 193

 Score = 22.4 bits (48), Expect = 6.9
 Identities = 6/24 (25%), Positives = 16/24 (66%)

Query: 36  RPGVIGGSKPRVATPDVERRIEEY 59
           RP ++GG++      ++ +++EE+
Sbjct: 168 RPKLVGGARAVYTREEMLKKLEEF 191


>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal
          domain) {Escherichia coli [TaxId: 562]}
          Length = 43

 Score = 21.2 bits (45), Expect = 8.6
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 1  MAAAGVRPCVISRQLRVSHGCVSKILN 27
          M   G+    IS+ + ++   V K++N
Sbjct: 14 MWQQGLGASHISKTMNIARSTVYKVIN 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 304,890
Number of extensions: 11800
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 11
Length of query: 77
Length of database: 2,407,596
Length adjustment: 44
Effective length of query: 33
Effective length of database: 1,803,476
Effective search space: 59514708
Effective search space used: 59514708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (21.9 bits)