Query psy15514
Match_columns 187
No_of_seqs 279 out of 1814
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 23:16:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh5_A ZF-HD homeobox family p 99.9 1.6E-21 5.5E-26 122.6 7.7 59 129-187 14-76 (80)
2 1wh7_A ZF-HD homeobox family p 99.8 2.6E-21 9E-26 121.4 7.6 57 129-186 14-75 (80)
3 1b72_A Protein (homeobox prote 99.8 1.4E-21 4.8E-26 127.7 3.7 86 99-186 3-88 (97)
4 2dmt_A Homeobox protein BARH-l 99.8 5.6E-21 1.9E-25 120.5 5.9 58 129-186 14-71 (80)
5 2kt0_A Nanog, homeobox protein 99.8 1.1E-20 3.8E-25 120.4 7.0 59 128-186 18-76 (84)
6 1fjl_A Paired protein; DNA-bin 99.8 3.1E-21 1E-25 122.1 4.3 67 120-186 6-72 (81)
7 2cra_A Homeobox protein HOX-B1 99.8 1.2E-20 3.9E-25 116.1 5.4 57 130-186 5-61 (70)
8 2vi6_A Homeobox protein nanog; 99.8 7.8E-21 2.7E-25 114.1 4.3 56 131-186 2-57 (62)
9 2da3_A Alpha-fetoprotein enhan 99.8 7.6E-21 2.6E-25 120.1 4.4 59 128-186 13-71 (80)
10 2hdd_A Protein (engrailed home 99.8 7.6E-21 2.6E-25 113.8 3.8 55 132-186 3-57 (61)
11 2h1k_A IPF-1, pancreatic and d 99.8 9.4E-21 3.2E-25 114.1 4.0 56 131-186 2-57 (63)
12 2djn_A Homeobox protein DLX-5; 99.8 1.8E-20 6.3E-25 115.2 5.3 57 130-186 5-61 (70)
13 1ig7_A Homeotic protein MSX-1; 99.8 1.3E-20 4.4E-25 111.7 4.3 54 133-186 1-54 (58)
14 2dmu_A Homeobox protein goosec 99.8 1.8E-20 6.3E-25 115.2 4.7 57 130-186 5-61 (70)
15 1nk2_P Homeobox protein VND; h 99.8 2.4E-20 8.4E-25 116.7 5.2 58 129-186 6-63 (77)
16 2da2_A Alpha-fetoprotein enhan 99.8 2.1E-20 7.2E-25 115.0 4.8 57 130-186 5-61 (70)
17 1bw5_A ISL-1HD, insulin gene e 99.8 1.9E-20 6.5E-25 113.8 4.2 56 131-186 2-57 (66)
18 1puf_A HOX-1.7, homeobox prote 99.8 4E-20 1.4E-24 115.8 5.5 58 129-186 10-67 (77)
19 1wi3_A DNA-binding protein SAT 99.8 3.4E-20 1.2E-24 109.7 4.8 56 130-185 5-61 (71)
20 1akh_A Protein (mating-type pr 99.8 1.6E-20 5.4E-25 112.5 3.4 57 130-186 3-59 (61)
21 2dms_A Homeobox protein OTX2; 99.8 3.5E-20 1.2E-24 116.9 5.2 57 130-186 5-61 (80)
22 1jgg_A Segmentation protein EV 99.8 2.3E-20 8E-25 111.3 4.0 54 133-186 2-55 (60)
23 2da1_A Alpha-fetoprotein enhan 99.8 1.8E-20 6.3E-25 115.2 3.7 57 130-186 5-61 (70)
24 1zq3_P PRD-4, homeotic bicoid 99.8 2.6E-20 8.8E-25 113.8 4.2 55 132-186 2-56 (68)
25 2ecc_A Homeobox and leucine zi 99.8 2.7E-20 9.3E-25 114.6 4.1 52 135-186 6-57 (76)
26 3rkq_A Homeobox protein NKX-2. 99.8 3.3E-20 1.1E-24 110.0 4.2 55 132-186 2-56 (58)
27 2cue_A Paired box protein PAX6 99.8 3.7E-20 1.2E-24 116.8 4.5 57 130-186 5-61 (80)
28 2l7z_A Homeobox protein HOX-A1 99.8 4.1E-20 1.4E-24 114.5 4.3 57 130-186 5-61 (73)
29 2e1o_A Homeobox protein PRH; D 99.8 5.1E-20 1.7E-24 113.2 4.6 56 131-186 6-61 (70)
30 1ahd_P Antennapedia protein mu 99.8 2.5E-20 8.7E-25 113.8 3.2 55 132-186 2-56 (68)
31 3a01_A Homeodomain-containing 99.8 7.2E-20 2.5E-24 118.5 5.3 58 129-186 14-71 (93)
32 1ftt_A TTF-1 HD, thyroid trans 99.8 5.1E-20 1.8E-24 112.5 4.3 55 132-186 2-56 (68)
33 2dmq_A LIM/homeobox protein LH 99.8 5.7E-20 2E-24 116.0 4.6 57 130-186 5-61 (80)
34 2da4_A Hypothetical protein DK 99.8 2.3E-20 7.9E-25 117.7 2.6 58 129-186 5-66 (80)
35 2m0c_A Homeobox protein arista 99.8 8.2E-20 2.8E-24 113.9 5.1 58 129-186 6-63 (75)
36 1yz8_P Pituitary homeobox 2; D 99.8 2.3E-20 8E-25 114.1 1.7 56 131-186 2-57 (68)
37 1b8i_A Ultrabithorax, protein 99.8 1E-19 3.5E-24 114.9 4.6 57 130-186 18-74 (81)
38 3a02_A Homeobox protein arista 99.8 7.7E-20 2.6E-24 109.0 3.5 52 135-186 2-53 (60)
39 2k40_A Homeobox expressed in E 99.8 1E-19 3.4E-24 110.9 4.1 54 133-186 2-55 (67)
40 2r5y_A Homeotic protein sex co 99.8 1E-19 3.5E-24 116.8 3.9 58 129-186 25-82 (88)
41 3a03_A T-cell leukemia homeobo 99.8 9.8E-20 3.4E-24 107.0 3.5 50 137-186 2-51 (56)
42 2dn0_A Zinc fingers and homeob 99.8 1.8E-19 6.2E-24 112.4 4.1 55 132-186 8-62 (76)
43 2hi3_A Homeodomain-only protei 99.8 2E-19 6.9E-24 111.4 4.3 54 133-186 3-57 (73)
44 2da5_A Zinc fingers and homeob 99.8 5.1E-19 1.8E-23 110.0 5.7 53 134-186 9-61 (75)
45 1uhs_A HOP, homeodomain only p 99.8 2.1E-19 7.3E-24 111.0 4.0 54 133-186 2-56 (72)
46 2ly9_A Zinc fingers and homeob 99.8 3.7E-19 1.3E-23 110.6 4.3 55 132-186 6-60 (74)
47 1du6_A PBX1, homeobox protein 99.8 5.4E-19 1.9E-23 106.7 4.9 55 132-186 3-60 (64)
48 3nar_A ZHX1, zinc fingers and 99.8 3.5E-19 1.2E-23 116.0 4.1 58 129-186 22-79 (96)
49 2xsd_C POU domain, class 3, tr 99.8 3.4E-19 1.2E-23 126.8 4.0 124 61-186 23-153 (164)
50 1ic8_A Hepatocyte nuclear fact 99.7 8.3E-20 2.9E-24 132.5 0.3 59 128-186 111-190 (194)
51 1x2n_A Homeobox protein pknox1 99.7 9.7E-19 3.3E-23 108.3 4.8 57 130-186 5-64 (73)
52 1lfb_A Liver transcription fac 99.7 8.6E-19 3E-23 114.1 4.1 59 128-186 5-84 (99)
53 3nau_A Zinc fingers and homeob 99.7 6.6E-19 2.3E-23 104.6 3.2 48 139-186 11-58 (66)
54 1puf_B PRE-B-cell leukemia tra 99.7 1E-18 3.6E-23 108.2 4.2 54 133-186 2-58 (73)
55 2e19_A Transcription factor 8; 99.7 1.3E-18 4.5E-23 104.6 4.4 50 137-186 8-57 (64)
56 2cuf_A FLJ21616 protein; homeo 99.7 9.3E-19 3.2E-23 113.8 4.0 57 130-186 5-76 (95)
57 1k61_A Mating-type protein alp 99.7 1.2E-18 4.2E-23 103.8 4.1 51 136-186 2-55 (60)
58 2da6_A Hepatocyte nuclear fact 99.7 1.7E-18 5.8E-23 112.1 4.4 57 130-186 4-81 (102)
59 2dmp_A Zinc fingers and homeob 99.7 3.2E-18 1.1E-22 109.8 5.5 50 137-186 18-67 (89)
60 2ecb_A Zinc fingers and homeob 99.7 2.9E-18 1E-22 109.1 5.1 49 138-186 17-65 (89)
61 1au7_A Protein PIT-1, GHF-1; c 99.7 2.2E-18 7.6E-23 120.4 5.0 79 106-186 63-141 (146)
62 1mnm_C Protein (MAT alpha-2 tr 99.7 3E-18 1E-22 109.6 4.9 58 129-186 24-84 (87)
63 2cqx_A LAG1 longevity assuranc 99.7 9.3E-19 3.2E-23 107.7 1.7 54 133-186 9-63 (72)
64 1e3o_C Octamer-binding transcr 99.7 2.4E-18 8.2E-23 122.1 3.9 58 129-186 98-155 (160)
65 1b72_B Protein (PBX1); homeodo 99.7 3E-18 1E-22 109.7 4.0 54 133-186 2-58 (87)
66 2l9r_A Homeobox protein NKX-3. 99.7 3.5E-18 1.2E-22 103.9 3.9 50 137-186 9-58 (69)
67 2dmn_A Homeobox protein TGIF2L 99.7 6.2E-18 2.1E-22 107.1 4.8 57 130-186 5-64 (83)
68 1le8_B Mating-type protein alp 99.7 5.7E-18 1.9E-22 107.3 4.1 53 134-186 4-59 (83)
69 3l1p_A POU domain, class 5, tr 99.7 2.8E-18 9.5E-23 121.1 1.8 124 61-186 20-150 (155)
70 1x2m_A LAG1 longevity assuranc 99.7 6.2E-18 2.1E-22 100.7 2.7 46 141-186 9-55 (64)
71 3d1n_I POU domain, class 6, tr 99.7 1.5E-17 5.1E-22 117.1 4.3 57 130-186 91-147 (151)
72 2d5v_A Hepatocyte nuclear fact 99.7 2.5E-17 8.6E-22 117.5 4.5 58 129-186 94-151 (164)
73 3k2a_A Homeobox protein MEIS2; 99.6 2.1E-16 7.2E-21 95.9 3.4 50 137-186 3-55 (67)
74 2h8r_A Hepatocyte nuclear fact 99.6 5.4E-16 1.8E-20 113.6 4.7 60 127-186 137-217 (221)
75 1wh7_A ZF-HD homeobox family p 99.6 7.5E-15 2.6E-19 91.9 8.7 58 59-117 14-76 (80)
76 1wh5_A ZF-HD homeobox family p 99.6 7.6E-15 2.6E-19 92.0 8.2 58 60-117 15-76 (80)
77 1fjl_A Paired protein; DNA-bin 99.6 2.2E-15 7.5E-20 95.0 5.0 66 50-115 6-71 (81)
78 2dmt_A Homeobox protein BARH-l 99.6 4.9E-15 1.7E-19 93.1 6.4 58 59-116 14-71 (80)
79 2kt0_A Nanog, homeobox protein 99.6 8E-15 2.7E-19 93.0 7.4 61 57-117 17-77 (84)
80 1wi3_A DNA-binding protein SAT 99.6 3.6E-15 1.2E-19 88.2 4.9 56 60-115 5-61 (71)
81 2cra_A Homeobox protein HOX-B1 99.6 7E-15 2.4E-19 90.0 6.4 59 60-118 5-63 (70)
82 2djn_A Homeobox protein DLX-5; 99.6 7.7E-15 2.6E-19 89.9 6.2 59 60-118 5-63 (70)
83 2da7_A Zinc finger homeobox pr 99.5 2.5E-15 8.4E-20 89.6 3.5 45 141-185 14-58 (71)
84 2da3_A Alpha-fetoprotein enhan 99.5 1E-14 3.5E-19 91.8 5.8 58 59-116 14-71 (80)
85 1nk2_P Homeobox protein VND; h 99.5 1.5E-14 5E-19 90.3 6.0 57 59-115 6-62 (77)
86 2hdd_A Protein (engrailed home 99.5 1.1E-14 3.7E-19 86.8 4.4 54 62-115 3-56 (61)
87 2h1k_A IPF-1, pancreatic and d 99.5 1.2E-14 4.2E-19 87.1 4.6 55 61-115 2-56 (63)
88 2da2_A Alpha-fetoprotein enhan 99.5 1.9E-14 6.6E-19 88.1 5.5 57 60-116 5-61 (70)
89 2da1_A Alpha-fetoprotein enhan 99.5 1.8E-14 6.2E-19 88.2 5.3 57 60-116 5-61 (70)
90 2dmu_A Homeobox protein goosec 99.5 2.1E-14 7E-19 88.0 5.6 55 61-115 6-60 (70)
91 2vi6_A Homeobox protein nanog; 99.5 1.2E-14 4.1E-19 86.9 4.3 56 61-116 2-57 (62)
92 1bw5_A ISL-1HD, insulin gene e 99.5 2.2E-14 7.5E-19 86.8 5.0 56 61-116 2-57 (66)
93 1ig7_A Homeotic protein MSX-1; 99.5 2.3E-14 8E-19 84.5 4.9 52 63-114 1-52 (58)
94 1puf_A HOX-1.7, homeobox prote 99.5 4.5E-14 1.5E-18 88.0 6.3 57 59-115 10-66 (77)
95 2cue_A Paired box protein PAX6 99.5 3.8E-14 1.3E-18 89.0 5.6 55 61-115 6-60 (80)
96 1zq3_P PRD-4, homeotic bicoid 99.5 3E-14 1E-18 86.7 4.9 54 62-115 2-55 (68)
97 2dms_A Homeobox protein OTX2; 99.5 3.9E-14 1.3E-18 89.0 5.6 57 60-116 5-61 (80)
98 1yz8_P Pituitary homeobox 2; D 99.5 2.5E-14 8.5E-19 87.1 4.4 55 61-115 2-56 (68)
99 3a01_A Homeodomain-containing 99.5 5.7E-14 1.9E-18 90.7 6.4 58 59-116 14-71 (93)
100 2l7z_A Homeobox protein HOX-A1 99.5 4.8E-14 1.7E-18 87.0 5.7 57 60-116 5-61 (73)
101 1akh_A Protein (mating-type pr 99.5 2.2E-14 7.6E-19 85.4 4.1 55 60-114 3-57 (61)
102 1jgg_A Segmentation protein EV 99.5 3.2E-14 1.1E-18 84.4 4.7 53 63-115 2-54 (60)
103 1ahd_P Antennapedia protein mu 99.5 3.6E-14 1.2E-18 86.3 4.7 54 62-115 2-55 (68)
104 2e1o_A Homeobox protein PRH; D 99.5 6.5E-14 2.2E-18 85.7 5.6 55 61-115 6-60 (70)
105 2dmq_A LIM/homeobox protein LH 99.5 6.5E-14 2.2E-18 88.0 5.6 56 60-115 5-60 (80)
106 2da4_A Hypothetical protein DK 99.5 3E-14 1E-18 89.5 3.9 56 60-115 6-65 (80)
107 2m0c_A Homeobox protein arista 99.5 8.8E-14 3E-18 86.3 5.9 58 59-116 6-63 (75)
108 1ftt_A TTF-1 HD, thyroid trans 99.5 6.4E-14 2.2E-18 85.2 5.0 54 62-115 2-55 (68)
109 2ecc_A Homeobox and leucine zi 99.5 7E-14 2.4E-18 85.9 5.1 52 64-115 5-56 (76)
110 3rkq_A Homeobox protein NKX-2. 99.5 7.1E-14 2.4E-18 82.4 5.0 53 62-114 2-54 (58)
111 2lk2_A Homeobox protein TGIF1; 99.5 3.1E-14 1.1E-18 89.9 3.2 50 137-186 10-62 (89)
112 1b8i_A Ultrabithorax, protein 99.4 1.1E-13 3.7E-18 87.1 5.2 56 60-115 18-73 (81)
113 2dn0_A Zinc fingers and homeob 99.4 1.6E-13 5.3E-18 85.3 5.9 56 62-117 8-63 (76)
114 2k40_A Homeobox expressed in E 99.4 1.1E-13 3.7E-18 84.0 4.9 54 63-116 2-55 (67)
115 2r5y_A Homeotic protein sex co 99.4 7.9E-14 2.7E-18 89.1 4.5 56 60-115 26-81 (88)
116 3a02_A Homeobox protein arista 99.4 1.2E-13 4.2E-18 81.9 4.2 51 65-115 2-52 (60)
117 3nar_A ZHX1, zinc fingers and 99.4 1.5E-13 5.2E-18 89.2 4.7 58 59-116 22-79 (96)
118 1b72_A Protein (homeobox prote 99.4 1.6E-13 5.4E-18 89.3 4.4 56 60-115 32-87 (97)
119 2h8r_A Hepatocyte nuclear fact 99.4 2.9E-14 9.8E-19 104.5 0.6 62 56-117 136-218 (221)
120 3a03_A T-cell leukemia homeobo 99.4 2E-13 7E-18 79.8 4.0 49 67-115 2-50 (56)
121 2ly9_A Zinc fingers and homeob 99.4 3.5E-13 1.2E-17 83.3 5.3 58 61-118 5-62 (74)
122 2hi3_A Homeodomain-only protei 99.4 4.4E-13 1.5E-17 82.7 5.0 53 63-115 3-56 (73)
123 1lfb_A Liver transcription fac 99.4 2.9E-13 9.9E-18 87.9 4.3 60 58-117 5-85 (99)
124 2da5_A Zinc fingers and homeob 99.4 7.8E-13 2.7E-17 81.9 6.1 53 65-117 10-62 (75)
125 1x2n_A Homeobox protein pknox1 99.4 7.3E-13 2.5E-17 81.7 5.7 56 60-115 5-63 (73)
126 1du6_A PBX1, homeobox protein 99.4 5.4E-13 1.9E-17 80.1 4.9 56 61-116 2-60 (64)
127 1uhs_A HOP, homeodomain only p 99.4 4.9E-13 1.7E-17 82.2 4.8 52 64-115 3-55 (72)
128 2cuf_A FLJ21616 protein; homeo 99.4 5.7E-13 2E-17 86.3 5.2 56 60-115 5-75 (95)
129 2da6_A Hepatocyte nuclear fact 99.3 1.1E-12 3.7E-17 84.9 5.4 56 60-115 4-80 (102)
130 1mh3_A Maltose binding-A1 home 99.3 4.1E-13 1.4E-17 108.6 3.8 56 132-187 365-420 (421)
131 1puf_B PRE-B-cell leukemia tra 99.3 1.2E-12 4.1E-17 80.7 5.0 53 63-115 2-57 (73)
132 1e3o_C Octamer-binding transcr 99.3 8.1E-13 2.8E-17 93.6 4.5 57 59-115 98-154 (160)
133 2cqx_A LAG1 longevity assuranc 99.3 7.4E-13 2.5E-17 81.2 2.6 55 63-117 9-64 (72)
134 1k61_A Mating-type protein alp 99.3 2.3E-12 7.8E-17 76.3 4.5 49 66-114 2-53 (60)
135 1au7_A Protein PIT-1, GHF-1; c 99.3 2.2E-12 7.5E-17 90.0 5.1 58 59-116 84-141 (146)
136 2ecb_A Zinc fingers and homeob 99.3 4.2E-12 1.5E-16 80.6 5.9 47 68-114 17-63 (89)
137 2xsd_C POU domain, class 3, tr 99.3 1.6E-12 5.5E-17 92.3 4.3 59 58-116 95-153 (164)
138 3nau_A Zinc fingers and homeob 99.3 1.9E-12 6.6E-17 76.8 3.7 45 70-114 12-56 (66)
139 1mnm_C Protein (MAT alpha-2 tr 99.3 3.4E-12 1.2E-16 81.3 5.0 55 60-114 25-82 (87)
140 1b72_B Protein (PBX1); homeodo 99.3 3E-12 1E-16 81.6 4.7 53 63-115 2-57 (87)
141 2dmn_A Homeobox protein TGIF2L 99.3 5.3E-12 1.8E-16 79.6 5.7 55 61-115 6-63 (83)
142 2dmp_A Zinc fingers and homeob 99.3 6.8E-12 2.3E-16 80.2 6.2 48 68-115 19-66 (89)
143 2e19_A Transcription factor 8; 99.3 7E-12 2.4E-16 75.0 5.5 51 67-117 8-58 (64)
144 3d1n_I POU domain, class 6, tr 99.3 5.5E-12 1.9E-16 88.5 5.6 57 59-115 90-146 (151)
145 2d5v_A Hepatocyte nuclear fact 99.2 6.3E-12 2.1E-16 89.5 4.5 60 59-118 94-153 (164)
146 1le8_B Mating-type protein alp 99.2 8.5E-12 2.9E-16 78.7 4.6 51 65-115 5-58 (83)
147 1x2m_A LAG1 longevity assuranc 99.2 5.8E-12 2E-16 74.8 3.4 49 71-119 9-58 (64)
148 2l9r_A Homeobox protein NKX-3. 99.2 9.9E-12 3.4E-16 75.3 4.3 51 67-117 9-59 (69)
149 3l1p_A POU domain, class 5, tr 99.2 1.5E-11 5.1E-16 86.6 4.2 56 60-115 94-149 (155)
150 1ic8_A Hepatocyte nuclear fact 99.2 1.6E-11 5.3E-16 89.1 3.7 112 4-115 36-189 (194)
151 3k2a_A Homeobox protein MEIS2; 99.0 1.8E-10 6.2E-15 69.5 4.1 49 67-115 3-54 (67)
152 2da7_A Zinc finger homeobox pr 98.9 9.1E-10 3.1E-14 65.6 3.6 45 71-115 14-58 (71)
153 2lk2_A Homeobox protein TGIF1; 98.6 2.4E-08 8.3E-13 62.9 3.7 48 67-114 10-60 (89)
154 1mh3_A Maltose binding-A1 home 98.5 5.8E-08 2E-12 78.3 4.6 55 62-116 365-419 (421)
155 2nzz_A Penetratin conjugated G 98.4 2.5E-08 8.5E-13 52.1 -1.0 13 174-186 1-13 (37)
156 2ys9_A Homeobox and leucine zi 96.5 0.003 1E-07 37.3 3.6 40 144-183 18-57 (70)
157 2ys9_A Homeobox and leucine zi 93.3 0.28 9.4E-06 28.9 5.4 44 74-117 18-61 (70)
158 2glo_A Brinker CG9653-PA; prot 89.1 0.55 1.9E-05 26.4 3.8 45 136-181 3-47 (59)
159 2elh_A CG11849-PA, LD40883P; s 86.4 3.1 0.00011 25.2 6.4 45 132-181 16-60 (87)
160 2k27_A Paired box protein PAX- 85.6 6.4 0.00022 26.6 10.6 106 68-185 25-137 (159)
161 1tc3_C Protein (TC3 transposas 85.2 2.1 7.3E-05 22.1 4.7 42 138-184 5-46 (51)
162 1hlv_A CENP-B, major centromer 83.7 2.2 7.5E-05 27.9 5.1 46 135-183 4-49 (131)
163 1u78_A TC3 transposase, transp 79.2 11 0.00036 24.5 10.0 96 67-182 5-102 (141)
164 1pdn_C Protein (PRD paired); p 77.4 11 0.00038 23.8 7.3 103 68-182 17-126 (128)
165 1jko_C HIN recombinase, DNA-in 75.6 2.9 0.0001 21.9 3.1 42 138-184 5-46 (52)
166 1k78_A Paired box protein PAX5 72.7 18 0.00061 23.9 9.4 105 67-183 31-142 (149)
167 2rgt_A Fusion of LIM/homeobox 70.6 0.064 2.2E-06 37.6 -6.0 30 60-89 134-163 (169)
168 2jn6_A Protein CGL2762, transp 70.4 8 0.00027 23.7 4.6 43 136-182 3-46 (97)
169 2rgt_A Fusion of LIM/homeobox 67.6 0.05 1.7E-06 38.1 -7.0 30 130-159 134-163 (169)
170 2rn7_A IS629 ORFA; helix, all 62.8 16 0.00053 22.8 4.9 47 136-182 4-53 (108)
171 2x48_A CAG38821; archeal virus 62.4 11 0.00036 20.2 3.5 36 141-181 18-53 (55)
172 2o8x_A Probable RNA polymerase 58.1 13 0.00046 20.7 3.6 40 138-182 15-54 (70)
173 1p4w_A RCSB; solution structur 57.8 11 0.00039 23.5 3.4 40 137-182 33-72 (99)
174 1fi6_A EH domain protein REPS1 57.5 13 0.00045 22.4 3.7 44 138-181 2-50 (92)
175 1iuf_A Centromere ABP1 protein 57.4 12 0.00041 25.0 3.8 48 133-183 6-60 (144)
176 3fmy_A HTH-type transcriptiona 57.4 19 0.00067 20.6 4.3 41 137-184 9-49 (73)
177 1ku3_A Sigma factor SIGA; heli 56.9 15 0.00053 21.0 3.8 44 137-181 9-52 (73)
178 2lv7_A Calcium-binding protein 55.3 17 0.00059 22.4 4.0 46 136-181 27-79 (100)
179 2xi8_A Putative transcription 55.2 8 0.00027 21.2 2.3 23 162-184 17-39 (66)
180 1je8_A Nitrate/nitrite respons 54.5 8.6 0.00029 22.9 2.4 40 137-182 20-59 (82)
181 3i5g_B Myosin regulatory light 53.7 27 0.00091 23.2 5.1 40 135-174 6-50 (153)
182 2r1j_L Repressor protein C2; p 53.5 9.5 0.00032 21.1 2.4 23 162-184 21-43 (68)
183 3hug_A RNA polymerase sigma fa 53.4 7 0.00024 23.7 1.9 40 138-182 37-76 (92)
184 1fse_A GERE; helix-turn-helix 53.1 22 0.00075 20.0 4.1 40 137-182 10-49 (74)
185 2pmy_A RAS and EF-hand domain- 52.7 9.2 0.00032 22.9 2.4 45 137-181 19-68 (91)
186 2p7v_B Sigma-70, RNA polymeras 51.9 18 0.00063 20.3 3.5 43 138-181 5-47 (68)
187 3ulq_B Transcriptional regulat 51.8 23 0.0008 21.4 4.2 42 135-182 26-67 (90)
188 1zug_A Phage 434 CRO protein; 51.0 10 0.00035 21.2 2.3 23 162-184 19-41 (71)
189 3bd1_A CRO protein; transcript 50.6 8.2 0.00028 22.5 1.8 23 162-184 14-36 (79)
190 3bs3_A Putative DNA-binding pr 50.2 11 0.00037 21.5 2.3 23 162-184 26-48 (76)
191 1c07_A Protein (epidermal grow 50.0 14 0.00047 22.4 2.9 43 139-181 4-51 (95)
192 3omt_A Uncharacterized protein 49.2 13 0.00044 21.1 2.6 23 162-184 24-46 (73)
193 3kz3_A Repressor protein CI; f 47.8 13 0.00046 21.5 2.5 24 162-185 28-51 (80)
194 1r69_A Repressor protein CI; g 47.6 13 0.00046 20.5 2.4 24 162-185 17-40 (69)
195 3o9x_A Uncharacterized HTH-typ 47.4 26 0.00089 22.6 4.1 40 138-184 70-109 (133)
196 1adr_A P22 C2 repressor; trans 47.4 13 0.00045 21.0 2.4 23 162-184 21-43 (76)
197 1u78_A TC3 transposase, transp 47.2 29 0.00099 22.3 4.4 41 137-182 5-45 (141)
198 2b5a_A C.BCLI; helix-turn-heli 46.6 13 0.00045 21.1 2.3 23 162-184 26-48 (77)
199 2lhi_A Calmodulin, serine/thre 46.2 66 0.0022 21.7 6.4 114 66-180 2-126 (176)
200 3c57_A Two component transcrip 46.1 15 0.00052 22.4 2.6 40 137-182 26-65 (95)
201 1tty_A Sigma-A, RNA polymerase 45.3 29 0.00099 20.6 3.8 44 137-181 17-60 (87)
202 2hxi_A Putative transcriptiona 44.5 16 0.00056 26.4 3.0 48 135-183 25-73 (241)
203 1y7y_A C.AHDI; helix-turn-heli 43.9 16 0.00053 20.6 2.3 23 162-184 29-51 (74)
204 1s7o_A Hypothetical UPF0122 pr 43.9 28 0.00096 22.2 3.7 40 138-182 22-61 (113)
205 3b7h_A Prophage LP1 protein 11 43.9 15 0.00052 20.9 2.3 23 162-184 23-45 (78)
206 2q24_A Putative TETR family tr 43.9 14 0.00048 25.1 2.5 38 144-183 21-58 (194)
207 2p0t_A UPF0307 protein pspto_4 43.4 4.8 0.00016 28.3 -0.1 19 2-29 110-128 (176)
208 2kpj_A SOS-response transcript 42.6 16 0.00054 22.0 2.3 23 162-184 25-47 (94)
209 1rzs_A Antirepressor, regulato 42.6 13 0.00045 20.6 1.8 19 162-180 13-31 (61)
210 3dcf_A Transcriptional regulat 41.8 12 0.00041 25.8 1.8 38 145-183 38-75 (218)
211 1x3u_A Transcriptional regulat 41.4 29 0.001 19.8 3.3 39 138-182 16-54 (79)
212 2qko_A Possible transcriptiona 41.2 12 0.0004 26.0 1.7 39 144-183 34-72 (215)
213 2a6c_A Helix-turn-helix motif; 40.4 17 0.00058 21.3 2.1 23 162-184 34-56 (83)
214 2jml_A DNA binding domain/tran 40.2 55 0.0019 19.1 5.3 50 90-149 6-55 (81)
215 2qwt_A Transcriptional regulat 39.7 20 0.00068 24.5 2.7 39 143-183 18-56 (196)
216 3fiw_A Putative TETR-family tr 39.4 13 0.00044 26.2 1.7 49 134-183 20-69 (211)
217 2k9q_A Uncharacterized protein 39.3 21 0.00071 20.4 2.4 23 162-184 18-40 (77)
218 2ef8_A C.ECOT38IS, putative tr 39.1 20 0.00069 20.7 2.3 23 162-184 26-48 (84)
219 3f6w_A XRE-family like protein 38.0 21 0.00072 20.7 2.3 23 162-184 30-52 (83)
220 3i5g_C Myosin catalytic light 37.8 62 0.0021 21.5 5.0 108 68-181 2-128 (159)
221 1q06_A Transcriptional regulat 37.5 83 0.0028 20.5 5.4 48 92-150 3-50 (135)
222 4ich_A Transcriptional regulat 37.4 14 0.00048 27.7 1.7 37 146-183 128-164 (311)
223 1k78_A Paired box protein PAX5 37.2 44 0.0015 21.9 4.1 40 137-181 31-70 (149)
224 2ict_A Antitoxin HIGA; helix-t 37.1 20 0.00069 21.5 2.1 23 162-184 24-46 (94)
225 1j7q_A CAVP, calcium vector pr 36.5 49 0.0017 18.9 3.9 45 137-181 6-60 (86)
226 3t76_A VANU, transcriptional r 36.1 24 0.00081 21.4 2.3 23 162-184 40-62 (88)
227 3i9v_2 NADH-quinone oxidoreduc 35.0 47 0.0016 23.2 4.0 35 143-177 27-61 (181)
228 2wiu_B HTH-type transcriptiona 35.0 21 0.00072 20.9 2.0 23 162-184 28-50 (88)
229 3mzy_A RNA polymerase sigma-H 34.9 38 0.0013 22.1 3.5 38 138-181 109-146 (164)
230 1j9i_A GPNU1 DBD;, terminase s 34.7 26 0.00089 19.8 2.3 21 162-182 5-25 (68)
231 3s8q_A R-M controller protein; 34.2 28 0.00096 20.1 2.4 23 162-184 27-49 (82)
232 1lmb_3 Protein (lambda repress 34.2 26 0.00088 20.8 2.3 23 162-184 33-55 (92)
233 3qq6_A HTH-type transcriptiona 34.1 29 0.00098 20.1 2.4 21 162-182 26-46 (78)
234 1xsv_A Hypothetical UPF0122 pr 33.6 22 0.00075 22.6 1.9 40 138-182 25-64 (113)
235 2hin_A GP39, repressor protein 33.6 24 0.00081 20.6 1.9 21 162-182 13-33 (71)
236 1eh2_A EPS15; calcium binding, 33.4 81 0.0028 19.5 4.6 43 138-180 8-54 (106)
237 1avs_A Troponin C; muscle cont 32.4 66 0.0023 18.5 4.0 44 138-181 13-63 (90)
238 2l49_A C protein; P2 bacteriop 32.3 32 0.0011 20.7 2.5 23 162-184 20-42 (99)
239 2rnj_A Response regulator prot 32.0 22 0.00076 21.3 1.7 40 137-182 28-67 (91)
240 1x57_A Endothelial differentia 31.3 28 0.00095 20.6 2.1 23 162-184 29-51 (91)
241 2k27_A Paired box protein PAX- 30.9 1.2E+02 0.0039 20.0 7.2 41 137-182 24-64 (159)
242 2rek_A Putative TETR-family tr 30.8 19 0.00065 24.5 1.4 38 144-183 22-59 (199)
243 3iz6_M 40S ribosomal protein S 30.8 30 0.001 23.6 2.3 17 137-153 57-73 (152)
244 2ktg_A Calmodulin, putative; e 30.7 52 0.0018 18.7 3.3 45 137-181 6-57 (85)
245 1dtl_A Cardiac troponin C; hel 30.7 83 0.0029 20.1 4.7 46 136-181 9-62 (161)
246 3g7r_A Putative transcriptiona 30.6 22 0.00076 24.8 1.8 37 146-183 43-79 (221)
247 2kvr_A Ubiquitin carboxyl-term 30.5 22 0.00074 23.5 1.5 23 162-184 72-94 (130)
248 3gp4_A Transcriptional regulat 30.4 1.2E+02 0.004 20.0 6.0 50 90-150 3-52 (142)
249 2g7l_A TETR-family transcripti 30.2 27 0.00094 25.2 2.2 48 135-183 15-63 (243)
250 2vz4_A Tipal, HTH-type transcr 29.9 1E+02 0.0035 19.1 5.4 49 91-150 3-51 (108)
251 1mij_A Protein prospero; homeo 29.5 41 0.0014 22.4 2.7 48 137-184 2-52 (152)
252 2opo_A Polcalcin CHE A 3; calc 29.2 49 0.0017 18.9 2.9 43 138-180 4-52 (86)
253 2jpc_A SSRB; DNA binding prote 29.1 26 0.00089 18.9 1.5 21 162-182 16-36 (61)
254 2ppx_A AGR_C_3184P, uncharacte 28.7 39 0.0013 20.5 2.5 23 162-184 46-68 (99)
255 2ofy_A Putative XRE-family tra 28.5 37 0.0013 19.7 2.3 24 161-184 29-52 (86)
256 2joj_A Centrin protein; N-term 28.2 47 0.0016 18.4 2.7 42 139-180 1-49 (77)
257 2ewt_A BLDD, putative DNA-bind 28.2 40 0.0014 18.6 2.3 23 162-184 24-48 (71)
258 3hh0_A Transcriptional regulat 27.8 1.3E+02 0.0046 19.8 5.6 50 90-150 5-54 (146)
259 2q0o_A Probable transcriptiona 27.0 41 0.0014 24.1 2.7 41 137-183 174-214 (236)
260 1uxc_A FRUR (1-57), fructose r 26.8 39 0.0013 19.1 2.1 23 162-184 3-25 (65)
261 1neq_A DNA-binding protein NER 26.8 35 0.0012 19.8 1.9 21 162-182 25-45 (74)
262 2zhg_A Redox-sensitive transcr 26.8 1.2E+02 0.0041 20.3 4.9 24 89-112 11-34 (154)
263 2ao9_A Phage protein; structur 26.8 56 0.0019 22.3 3.1 46 136-181 21-70 (155)
264 2v79_A DNA replication protein 26.5 68 0.0023 21.1 3.5 40 139-181 30-73 (135)
265 2hxo_A Putative TETR-family tr 26.4 54 0.0018 23.4 3.2 48 135-183 12-60 (237)
266 3eus_A DNA-binding protein; st 26.4 46 0.0016 19.5 2.4 23 162-184 30-52 (86)
267 3gpv_A Transcriptional regulat 26.3 1.2E+02 0.0043 20.0 4.9 50 90-150 17-66 (148)
268 3op9_A PLI0006 protein; struct 26.2 39 0.0013 21.0 2.2 23 162-184 25-47 (114)
269 2pij_A Prophage PFL 6 CRO; tra 26.1 40 0.0014 18.5 2.1 23 162-184 16-38 (67)
270 2jvl_A TRMBF1; coactivator, he 25.7 45 0.0015 20.7 2.4 23 162-184 52-74 (107)
271 3ccy_A Putative TETR-family tr 25.5 55 0.0019 22.2 3.1 39 144-183 20-58 (203)
272 3g5g_A Regulatory protein; tra 25.2 46 0.0016 20.3 2.3 23 162-184 44-66 (99)
273 2l8n_A Transcriptional repress 25.1 54 0.0018 18.6 2.4 24 161-184 11-34 (67)
274 3vk0_A NHTF, transcriptional r 24.6 50 0.0017 20.6 2.5 23 162-184 37-59 (114)
275 1rp3_A RNA polymerase sigma fa 24.3 76 0.0026 22.2 3.7 40 137-181 186-225 (239)
276 3cec_A Putative antidote prote 24.3 50 0.0017 20.1 2.4 23 162-184 34-56 (104)
277 1b0n_A Protein (SINR protein); 24.2 51 0.0017 20.1 2.4 21 162-182 17-37 (111)
278 1or7_A Sigma-24, RNA polymeras 24.1 80 0.0027 21.3 3.7 40 138-182 140-179 (194)
279 2fq4_A Transcriptional regulat 24.0 48 0.0016 22.3 2.5 40 143-183 17-56 (192)
280 1l3l_A Transcriptional activat 23.5 50 0.0017 23.6 2.6 41 137-183 172-212 (234)
281 2eby_A Putative HTH-type trans 23.2 50 0.0017 20.4 2.3 23 162-184 27-49 (113)
282 3qao_A LMO0526 protein, MERR-l 23.0 2E+02 0.0069 20.9 5.9 51 89-150 3-53 (249)
283 1iq3_A Ralbp1-interacting prot 23.0 21 0.00073 22.5 0.4 45 137-181 14-63 (110)
284 3mlf_A Transcriptional regulat 22.9 49 0.0017 20.7 2.2 23 162-184 39-61 (111)
285 3kkc_A TETR family transcripti 22.8 57 0.0019 21.4 2.6 39 144-183 18-56 (177)
286 1xwr_A Regulatory protein CII; 22.7 50 0.0017 20.6 2.1 18 162-179 26-43 (97)
287 2v57_A TETR family transcripti 22.5 41 0.0014 22.4 1.9 36 145-183 21-56 (190)
288 3trb_A Virulence-associated pr 22.4 58 0.002 20.2 2.4 23 162-184 30-52 (104)
289 3ivp_A Putative transposon-rel 22.4 52 0.0018 20.9 2.2 23 162-184 28-50 (126)
290 3f52_A CLP gene regulator (CLG 22.3 56 0.0019 20.3 2.4 23 162-184 44-66 (117)
291 3q0w_A HTH-type transcriptiona 22.2 27 0.00094 24.6 0.9 38 145-183 51-88 (236)
292 3g1o_A Transcriptional regulat 21.9 34 0.0012 24.4 1.4 39 144-183 49-87 (255)
293 3u0k_A Rcamp; fluorescent prot 21.9 1.1E+02 0.0039 24.6 4.5 48 133-180 290-344 (440)
294 3gzi_A Transcriptional regulat 21.7 62 0.0021 22.0 2.8 38 145-183 24-61 (218)
295 3lfp_A CSP231I C protein; tran 21.7 60 0.0021 19.5 2.4 23 162-184 17-43 (98)
296 2pjp_A Selenocysteine-specific 21.7 64 0.0022 20.5 2.6 40 140-181 2-42 (121)
297 2iu5_A DHAS, YCEG, HTH-type dh 21.5 49 0.0017 22.3 2.1 40 143-183 18-57 (195)
298 2kgr_A Intersectin-1; structur 21.5 89 0.0031 19.3 3.2 43 138-180 7-54 (111)
299 2kn2_A Calmodulin; S MAPK phos 21.3 1.1E+02 0.0036 17.6 3.4 40 141-180 5-51 (92)
300 2mys_B Myosin; muscle protein, 21.3 1.6E+02 0.0053 19.0 4.6 44 138-181 18-69 (166)
301 3him_A Probable transcriptiona 21.1 53 0.0018 22.1 2.2 39 144-183 22-60 (211)
302 2jt1_A PEFI protein; solution 21.0 57 0.002 19.2 2.0 23 155-179 22-44 (77)
303 3lsg_A Two-component response 20.9 71 0.0024 19.3 2.6 23 160-182 20-42 (103)
304 3bni_A Putative TETR-family tr 20.9 59 0.002 22.7 2.5 37 146-183 51-87 (229)
305 3bru_A Regulatory protein, TET 20.6 67 0.0023 21.9 2.7 39 144-183 36-74 (222)
306 2cw1_A SN4M; lambda CRO fold, 20.5 59 0.002 18.4 1.9 24 161-184 15-38 (65)
307 3kz9_A SMCR; transcriptional r 20.4 67 0.0023 21.5 2.6 38 145-183 24-61 (206)
308 2rae_A Transcriptional regulat 20.4 75 0.0026 21.4 2.9 40 144-184 23-62 (207)
309 2hku_A A putative transcriptio 20.3 51 0.0017 22.6 2.0 36 146-183 28-63 (215)
310 3knw_A Putative transcriptiona 20.3 62 0.0021 21.9 2.5 39 144-183 20-58 (212)
311 3crj_A Transcription regulator 20.2 59 0.002 22.1 2.3 39 144-183 20-58 (199)
No 1
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.85 E-value=1.6e-21 Score=122.62 Aligned_cols=59 Identities=24% Similarity=0.262 Sum_probs=55.8
Q ss_pred cccccccCCCCCHHHHHHHHHHhhh----cCCCCHHHHHHHHHHcCCChhhhhhhhcccCCCC
Q psy15514 129 KRKQRRSRTTFSAQQLDELERAFER----TQYPDIYTREELAQRTKLTEARIQTIFIVRKMRG 187 (187)
Q Consensus 129 ~~~~~r~r~~~t~~q~~~Le~~f~~----~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~ 187 (187)
..+.+|.||.||.+|+.+||..|+. ++||+..++++||..|||++.+|+|||||||+|.
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~ 76 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSG 76 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSS
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCC
Confidence 3567889999999999999999999 9999999999999999999999999999999983
No 2
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.85 E-value=2.6e-21 Score=121.38 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=54.2
Q ss_pred cccccccCCCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 129 KRKQRRSRTTFSAQQLDELERAFER-----TQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 129 ~~~~~r~r~~~t~~q~~~Le~~f~~-----~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
..+.+|.||.||.+|+.+|| .|.. ++||+..++++||..+||++.+|+|||||||+|
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k 75 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNS 75 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccC
Confidence 45678899999999999999 8999 999999999999999999999999999999998
No 3
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=1.4e-21 Score=127.68 Aligned_cols=86 Identities=22% Similarity=0.249 Sum_probs=58.9
Q ss_pred hcCCchhhHhHhhccCCCCCCCCCCCCCcccccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhh
Q psy15514 99 TKLFPHFLIIIEQQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQT 178 (187)
Q Consensus 99 ~~l~~~~v~~wfq~~~~~~~~~~~~~~~~~~~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~ 178 (187)
++.+...+..|+++.+........ ..+.....++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++
T Consensus 3 ~~~~~~~~~~W~~~~r~~~~~~~~--~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 80 (97)
T 1b72_A 3 PNTPTARTFDWMKVKRNPPKTAKV--SEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKI 80 (97)
T ss_dssp -----CCCCGGGGC----------------------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCcccccccccccCCCCCCCC--CCCCCCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHH
Confidence 455667788999987755432221 112235677889999999999999999999999999999999999999999999
Q ss_pred hhcccCCC
Q psy15514 179 IFIVRKMR 186 (187)
Q Consensus 179 WF~nrR~k 186 (187)
||||||+|
T Consensus 81 WFqNRR~k 88 (97)
T 1b72_A 81 WFQNRRMK 88 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhHH
Confidence 99999986
No 4
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.6e-21 Score=120.52 Aligned_cols=58 Identities=36% Similarity=0.566 Sum_probs=55.3
Q ss_pred cccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 129 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 129 ~~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.++.++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 71 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMK 71 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999986
No 5
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=120.36 Aligned_cols=59 Identities=29% Similarity=0.478 Sum_probs=56.0
Q ss_pred ccccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 128 LKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 128 ~~~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
...+.++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k 76 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMK 76 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999987
No 6
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.83 E-value=3.1e-21 Score=122.05 Aligned_cols=67 Identities=85% Similarity=1.190 Sum_probs=54.5
Q ss_pred CCCCCCCcccccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 120 CDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 120 ~~~~~~~~~~~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
+.+.++....++.++.|+.||.+|+..||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 6 ~~~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 72 (81)
T 1fjl_A 6 CESEPGIALKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRAR 72 (81)
T ss_dssp -----------CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhh
Confidence 3444455556778899999999999999999999999999999999999999999999999999986
No 7
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=1.2e-20 Score=116.09 Aligned_cols=57 Identities=28% Similarity=0.476 Sum_probs=54.5
Q ss_pred ccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 130 ~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.+.++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k 61 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVK 61 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHH
Confidence 456788999999999999999999999999999999999999999999999999987
No 8
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.82 E-value=7.8e-21 Score=114.12 Aligned_cols=56 Identities=27% Similarity=0.462 Sum_probs=49.4
Q ss_pred cccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 131 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 131 ~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
+.++.|+.||.+|+.+||..|..++||+..++.+||..+||++.+|++||||||+|
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 57 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMK 57 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcc
Confidence 45778999999999999999999999999999999999999999999999999987
No 9
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=7.6e-21 Score=120.06 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=55.6
Q ss_pred ccccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 128 LKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 128 ~~~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
...+.++.|+.||.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 71 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRAR 71 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHh
Confidence 34667889999999999999999999999999999999999999999999999999986
No 10
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.81 E-value=7.6e-21 Score=113.78 Aligned_cols=55 Identities=33% Similarity=0.568 Sum_probs=50.1
Q ss_pred ccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 132 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 132 ~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.++.|+.||.+|+..||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 57 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAK 57 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccc
Confidence 4678999999999999999999999999999999999999999999999999986
No 11
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.81 E-value=9.4e-21 Score=114.09 Aligned_cols=56 Identities=38% Similarity=0.492 Sum_probs=51.8
Q ss_pred cccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 131 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 131 ~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
+.++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 57 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMK 57 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhh
Confidence 35778999999999999999999999999999999999999999999999999986
No 12
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-20 Score=115.17 Aligned_cols=57 Identities=33% Similarity=0.531 Sum_probs=54.5
Q ss_pred ccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 130 ~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.+.++.|+.||.+|+.+||..|..++||+..+++.||..+||++.+|++||||||+|
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSK 61 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 456788999999999999999999999999999999999999999999999999987
No 13
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.81 E-value=1.3e-20 Score=111.68 Aligned_cols=54 Identities=37% Similarity=0.586 Sum_probs=52.0
Q ss_pred cccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 133 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 133 ~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 54 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAK 54 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhh
Confidence 467899999999999999999999999999999999999999999999999986
No 14
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-20 Score=115.22 Aligned_cols=57 Identities=40% Similarity=0.713 Sum_probs=54.2
Q ss_pred ccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 130 ~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.+.++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAK 61 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccc
Confidence 456788999999999999999999999999999999999999999999999999976
No 15
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.81 E-value=2.4e-20 Score=116.71 Aligned_cols=58 Identities=31% Similarity=0.480 Sum_probs=54.7
Q ss_pred cccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 129 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 129 ~~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
..+.++.|+.||..|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k 63 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYK 63 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcc
Confidence 3466788999999999999999999999999999999999999999999999999986
No 16
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.81 E-value=2.1e-20 Score=114.97 Aligned_cols=57 Identities=28% Similarity=0.348 Sum_probs=54.4
Q ss_pred ccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 130 ~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.+.++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQK 61 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHH
Confidence 456788999999999999999999999999999999999999999999999999976
No 17
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.80 E-value=1.9e-20 Score=113.84 Aligned_cols=56 Identities=27% Similarity=0.439 Sum_probs=53.5
Q ss_pred cccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 131 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 131 ~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
+.++.|+.||.+|+..||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 57 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCK 57 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999986
No 18
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.80 E-value=4e-20 Score=115.75 Aligned_cols=58 Identities=31% Similarity=0.430 Sum_probs=55.0
Q ss_pred cccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 129 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 129 ~~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.++.++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k 67 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMK 67 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999999999986
No 19
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=3.4e-20 Score=109.66 Aligned_cols=56 Identities=25% Similarity=0.315 Sum_probs=53.5
Q ss_pred ccccccCCCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHcCCChhhhhhhhcccCC
Q psy15514 130 RKQRRSRTTFSAQQLDELERAFER-TQYPDIYTREELAQRTKLTEARIQTIFIVRKM 185 (187)
Q Consensus 130 ~~~~r~r~~~t~~q~~~Le~~f~~-~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~ 185 (187)
+..+|.||.|+.+|+..|+..|+. ++||+...++.||..+||++.+|++||||+|.
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~ 61 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRY 61 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhcccee
Confidence 467889999999999999999999 99999999999999999999999999999984
No 20
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.80 E-value=1.6e-20 Score=112.46 Aligned_cols=57 Identities=28% Similarity=0.446 Sum_probs=47.3
Q ss_pred ccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 130 ~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.+.++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||+|||+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 456788999999999999999999999999999999999999999999999999986
No 21
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=3.5e-20 Score=116.88 Aligned_cols=57 Identities=47% Similarity=0.763 Sum_probs=54.7
Q ss_pred ccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 130 ~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.+.++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k 61 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAK 61 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHH
Confidence 467889999999999999999999999999999999999999999999999999986
No 22
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.80 E-value=2.3e-20 Score=111.29 Aligned_cols=54 Identities=39% Similarity=0.569 Sum_probs=51.6
Q ss_pred cccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 133 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 133 ~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
++.|+.||.+|+..||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 55 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMK 55 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhH
Confidence 578999999999999999999999999999999999999999999999999986
No 23
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-20 Score=115.23 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=54.4
Q ss_pred ccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 130 ~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.+.++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFK 61 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHH
Confidence 456789999999999999999999999999999999999999999999999999976
No 24
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.80 E-value=2.6e-20 Score=113.82 Aligned_cols=55 Identities=33% Similarity=0.505 Sum_probs=53.0
Q ss_pred ccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 132 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 132 ~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
+++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k 56 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRR 56 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHH
Confidence 5778999999999999999999999999999999999999999999999999986
No 25
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=2.7e-20 Score=114.56 Aligned_cols=52 Identities=23% Similarity=0.178 Sum_probs=49.8
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 135 SRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 135 ~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.|+.||.+|+.+|+..|..++||+..++++||..+||++.+|++||||||+|
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k 57 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYA 57 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHH
Confidence 4677999999999999999999999999999999999999999999999975
No 26
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.80 E-value=3.3e-20 Score=109.97 Aligned_cols=55 Identities=35% Similarity=0.553 Sum_probs=52.6
Q ss_pred ccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 132 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 132 ~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.++.|+.||.+|+..||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 56 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYK 56 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhcc
Confidence 3578999999999999999999999999999999999999999999999999986
No 27
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=3.7e-20 Score=116.76 Aligned_cols=57 Identities=46% Similarity=0.823 Sum_probs=54.3
Q ss_pred ccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 130 ~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
...++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k 61 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAK 61 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999986
No 28
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.79 E-value=4.1e-20 Score=114.48 Aligned_cols=57 Identities=25% Similarity=0.471 Sum_probs=54.1
Q ss_pred ccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 130 ~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.+.++.|+.||.+|+..||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k 61 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVK 61 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHH
Confidence 456788999999999999999999999999999999999999999999999999976
No 29
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=5.1e-20 Score=113.19 Aligned_cols=56 Identities=30% Similarity=0.452 Sum_probs=53.3
Q ss_pred cccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 131 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 131 ~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
..++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAK 61 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhh
Confidence 45678899999999999999999999999999999999999999999999999986
No 30
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.79 E-value=2.5e-20 Score=113.82 Aligned_cols=55 Identities=35% Similarity=0.492 Sum_probs=52.7
Q ss_pred ccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 132 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 132 ~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.++.|+.||.+|+..||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k 56 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMK 56 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhH
Confidence 3678999999999999999999999999999999999999999999999999986
No 31
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.79 E-value=7.2e-20 Score=118.47 Aligned_cols=58 Identities=33% Similarity=0.558 Sum_probs=55.0
Q ss_pred cccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 129 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 129 ~~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
..+.++.|+.||.+|+..||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 71 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTK 71 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhh
Confidence 4567788999999999999999999999999999999999999999999999999986
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.79 E-value=5.1e-20 Score=112.49 Aligned_cols=55 Identities=33% Similarity=0.508 Sum_probs=52.8
Q ss_pred ccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 132 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 132 ~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.++.|+.||.+|+..||..|..++||+..++..||..+||++.+|++||+|||+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k 56 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYK 56 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhh
Confidence 4678999999999999999999999999999999999999999999999999976
No 33
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=5.7e-20 Score=115.96 Aligned_cols=57 Identities=30% Similarity=0.428 Sum_probs=54.3
Q ss_pred ccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 130 ~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.+.++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 61 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAK 61 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999986
No 34
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.3e-20 Score=117.72 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=54.9
Q ss_pred cccccccCCCCCHHHHHHHHHHhhhc----CCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 129 KRKQRRSRTTFSAQQLDELERAFERT----QYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 129 ~~~~~r~r~~~t~~q~~~Le~~f~~~----~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
..+.++.|+.||.+|+.+||..|..+ +||+..++++||..+||++.+|+|||||||+|
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k 66 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRK 66 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHH
Confidence 35678899999999999999999999 99999999999999999999999999999986
No 35
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.79 E-value=8.2e-20 Score=113.90 Aligned_cols=58 Identities=57% Similarity=0.928 Sum_probs=55.0
Q ss_pred cccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 129 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 129 ~~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.++.++.|+.||.+|+..||..|..++||+..++..||..+||++.+|++||+|||+|
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 63 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAK 63 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHH
Confidence 4567888999999999999999999999999999999999999999999999999986
No 36
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.78 E-value=2.3e-20 Score=114.05 Aligned_cols=56 Identities=52% Similarity=0.812 Sum_probs=53.6
Q ss_pred cccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 131 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 131 ~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
+.++.|+.||.+|+..||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 57 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAK 57 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHH
Confidence 46788999999999999999999999999999999999999999999999999986
No 37
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.78 E-value=1e-19 Score=114.90 Aligned_cols=57 Identities=35% Similarity=0.484 Sum_probs=50.2
Q ss_pred ccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 130 ~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.+.++.|+.||.+|+.+||..|..++||+..++.+||..+||++.+|++||||||+|
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k 74 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMK 74 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhh
Confidence 456788999999999999999999999999999999999999999999999999986
No 38
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.78 E-value=7.7e-20 Score=109.02 Aligned_cols=52 Identities=58% Similarity=0.875 Sum_probs=48.1
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 135 SRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 135 ~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.|+.||.+|+..||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 53 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAK 53 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhh
Confidence 4789999999999999999999999999999999999999999999999986
No 39
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.78 E-value=1e-19 Score=110.92 Aligned_cols=54 Identities=41% Similarity=0.605 Sum_probs=52.2
Q ss_pred cccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 133 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 133 ~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 55 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAK 55 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHH
Confidence 578999999999999999999999999999999999999999999999999976
No 40
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.78 E-value=1e-19 Score=116.77 Aligned_cols=58 Identities=33% Similarity=0.471 Sum_probs=51.1
Q ss_pred cccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 129 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 129 ~~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
..+.++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k 82 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMK 82 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHH
Confidence 3456788999999999999999999999999999999999999999999999999986
No 41
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.78 E-value=9.8e-20 Score=106.97 Aligned_cols=50 Identities=38% Similarity=0.555 Sum_probs=47.2
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
|.||.+|+..||..|..++||+..++.+||..+||++.+|++||||||+|
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k 51 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTK 51 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhh
Confidence 67999999999999999999999999999999999999999999999986
No 42
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-19 Score=112.43 Aligned_cols=55 Identities=25% Similarity=0.349 Sum_probs=51.8
Q ss_pred ccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 132 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 132 ~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
+...|+.||.+|+.+||..|..++||+..++.+||..+||++.+|++||||||+|
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 62 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYH 62 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHH
Confidence 3446899999999999999999999999999999999999999999999999976
No 43
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=2e-19 Score=111.36 Aligned_cols=54 Identities=26% Similarity=0.278 Sum_probs=51.3
Q ss_pred cccCCCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 133 RRSRTTFSAQQLDELERAFER-TQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 133 ~r~r~~~t~~q~~~Le~~f~~-~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.+.|+.||.+|+.+||..|.. ++||+..++..||..+||++.+|++||||||+|
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k 57 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAE 57 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 467899999999999999995 999999999999999999999999999999976
No 44
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5.1e-19 Score=110.02 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=50.4
Q ss_pred ccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 134 RSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 134 r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
+.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k 61 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKK 61 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHH
Confidence 45677999999999999999999999999999999999999999999999986
No 45
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=2.1e-19 Score=110.99 Aligned_cols=54 Identities=28% Similarity=0.325 Sum_probs=51.2
Q ss_pred cccCCCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 133 RRSRTTFSAQQLDELERAFER-TQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 133 ~r~r~~~t~~q~~~Le~~f~~-~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.+.|+.||.+|+.+||..|.. ++||+..++..||..+||++.+|++||||||+|
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k 56 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAE 56 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHH
Confidence 357899999999999999996 999999999999999999999999999999986
No 46
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.76 E-value=3.7e-19 Score=110.57 Aligned_cols=55 Identities=24% Similarity=0.276 Sum_probs=52.6
Q ss_pred ccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 132 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 132 ~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.++.|+.||.+|+..||..|..++||+..++++||..+||++.+|++||||||+|
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 60 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYN 60 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHH
Confidence 4678899999999999999999999999999999999999999999999999976
No 47
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=5.4e-19 Score=106.71 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=52.7
Q ss_pred ccccCCCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 132 QRRSRTTFSAQQLDELERAF---ERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 132 ~~r~r~~~t~~q~~~Le~~f---~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.++.|+.|+.+|+.+|+..| ..++||+..++..||..+||++.+|++||+|||+|
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r 60 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 60 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 46788999999999999999 99999999999999999999999999999999987
No 48
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.76 E-value=3.5e-19 Score=116.02 Aligned_cols=58 Identities=26% Similarity=0.302 Sum_probs=51.7
Q ss_pred cccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 129 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 129 ~~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
....++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 79 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYA 79 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhH
Confidence 3456678999999999999999999999999999999999999999999999999985
No 49
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.75 E-value=3.4e-19 Score=126.79 Aligned_cols=124 Identities=16% Similarity=0.180 Sum_probs=72.9
Q ss_pred CCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCch-------hhHhHhhccCCCCCCCCCCCCCccccccc
Q psy15514 61 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPH-------FLIIIEQQSSGEGSDCDSEPGIPLKRKQR 133 (187)
Q Consensus 61 ~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~-------~v~~wfq~~~~~~~~~~~~~~~~~~~~~~ 133 (187)
+.+|....||+.++.........+.|.-..- . ....+.++.. -+..|.....................+.+
T Consensus 23 k~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti-~-rFE~l~ls~kn~~klkPlL~~wl~eae~~~~~~~~~~~~~~~~~~r 100 (164)
T 2xsd_C 23 KQRRIKLGFTQADVGLALGTLYGNVFSQTTI-C-RFEALQLSFKNMCKLKPLLNKWLEETDSSSGSPTNLDKIAAQGRKR 100 (164)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHSCCCCHHHH-H-HHHTTCSBHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred HHHHhhcCCcccccccccccccCCCcCcchh-h-hhhccCCCHHHHHHcchhHHHHHhhhccccCCCcccccccccccCC
Confidence 5566667788888775544444444431111 0 0112222211 15677766554433222222233456778
Q ss_pred ccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 134 RSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 134 r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
+.|+.||..|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 101 r~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 153 (164)
T 2xsd_C 101 KKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQK 153 (164)
T ss_dssp -----CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHH
Confidence 89999999999999999999999999999999999999999999999999986
No 50
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.75 E-value=8.3e-20 Score=132.54 Aligned_cols=59 Identities=29% Similarity=0.425 Sum_probs=51.9
Q ss_pred ccccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcC---------------------CChhhhhhhhcccCCC
Q psy15514 128 LKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTK---------------------LTEARIQTIFIVRKMR 186 (187)
Q Consensus 128 ~~~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~---------------------l~~~~v~~WF~nrR~k 186 (187)
..++.+|.|+.|+..|+.+|+..|..++||+..+|++||..++ |++.+|++||||||+|
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 3467788999999999999999999999999999999999999 9999999999999986
No 51
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=9.7e-19 Score=108.33 Aligned_cols=57 Identities=18% Similarity=0.304 Sum_probs=53.6
Q ss_pred ccccccCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 130 RKQRRSRTTFSAQQLDELERAFER---TQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 130 ~~~~r~r~~~t~~q~~~Le~~f~~---~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.+.++.|+.|+.+|+.+|+..|.. ++||+..+++.||..+||++.+|++||+|||+|
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r 64 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 64 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhh
Confidence 456778999999999999999987 999999999999999999999999999999976
No 52
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.74 E-value=8.6e-19 Score=114.06 Aligned_cols=59 Identities=29% Similarity=0.410 Sum_probs=50.0
Q ss_pred ccccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHH------------------cC---CChhhhhhhhcccCCC
Q psy15514 128 LKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQR------------------TK---LTEARIQTIFIVRKMR 186 (187)
Q Consensus 128 ~~~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~------------------~~---l~~~~v~~WF~nrR~k 186 (187)
..++.++.|+.|+.+|+.+||..|..++||+..++++||.. +| |++.+|++||||||+|
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 34677889999999999999999999999999999999999 88 9999999999999986
No 53
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.74 E-value=6.6e-19 Score=104.62 Aligned_cols=48 Identities=25% Similarity=0.365 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 139 FSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 139 ~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
-|.+|+.+||..|..++||+..++.+||..+||++.+|++||||||+|
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k 58 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYR 58 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhh
Confidence 478999999999999999999999999999999999999999999975
No 54
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.74 E-value=1e-18 Score=108.19 Aligned_cols=54 Identities=30% Similarity=0.504 Sum_probs=51.9
Q ss_pred cccCCCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 133 RRSRTTFSAQQLDELERAF---ERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 133 ~r~r~~~t~~q~~~Le~~f---~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
++.|+.||.+|+.+|+..| ..++||+..++..||..+||++.+|++||+|||+|
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r 58 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 58 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 6788999999999999999 99999999999999999999999999999999975
No 55
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-18 Score=104.56 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
..++.+|+..||..|..++||+..++.+||..+||++.+|++||||||+|
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak 57 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAG 57 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCC
Confidence 34578999999999999999999999999999999999999999999987
No 56
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=9.3e-19 Score=113.83 Aligned_cols=57 Identities=32% Similarity=0.461 Sum_probs=54.6
Q ss_pred ccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcC---------------CChhhhhhhhcccCCC
Q psy15514 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTK---------------LTEARIQTIFIVRKMR 186 (187)
Q Consensus 130 ~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~---------------l~~~~v~~WF~nrR~k 186 (187)
.+.++.|+.|+.+|+.+||..|+.++||+..+++.||..++ |++.+|++||||||+|
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k 76 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKE 76 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999 9999999999999986
No 57
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.74 E-value=1.2e-18 Score=103.78 Aligned_cols=51 Identities=24% Similarity=0.350 Sum_probs=49.4
Q ss_pred CCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 136 RTTFSAQQLDELERAFER---TQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 136 r~~~t~~q~~~Le~~f~~---~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
++.||.+|+.+||..|.. ++||+..++..||..+||++.+|++||+|||+|
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r 55 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 55 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcc
Confidence 688999999999999999 999999999999999999999999999999976
No 58
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-18 Score=112.14 Aligned_cols=57 Identities=25% Similarity=0.373 Sum_probs=54.2
Q ss_pred ccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHc---------------------CCChhhhhhhhcccCCC
Q psy15514 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRT---------------------KLTEARIQTIFIVRKMR 186 (187)
Q Consensus 130 ~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~---------------------~l~~~~v~~WF~nrR~k 186 (187)
++.+|.|+.|++.|+.+||..|+.++||+..++++||..+ +|++.+|++||||||+|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 4678899999999999999999999999999999999999 89999999999999975
No 59
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.2e-18 Score=109.79 Aligned_cols=50 Identities=24% Similarity=0.342 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
..||.+|+.+||..|..++||+..+++.||..+||++.+|++||||||+|
T Consensus 18 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k 67 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKL 67 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHH
Confidence 45999999999999999999999999999999999999999999999976
No 60
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=2.9e-18 Score=109.15 Aligned_cols=49 Identities=27% Similarity=0.259 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 138 TFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 138 ~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.||.+|+.+||..|..++||+..++.+||..+||++.+|+|||||||+|
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k 65 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKS 65 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchH
Confidence 7999999999999999999999999999999999999999999999975
No 61
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.73 E-value=2.2e-18 Score=120.41 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=58.3
Q ss_pred hHhHhhccCCCCCCCCCCCCCcccccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCC
Q psy15514 106 LIIIEQQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKM 185 (187)
Q Consensus 106 v~~wfq~~~~~~~~~~~~~~~~~~~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~ 185 (187)
+..|.............. .....+.++.|+.||..|+..||..|..++||+..++..||..+||++.+|++||||||+
T Consensus 63 L~~wl~e~e~~~~~~~~~--~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~ 140 (146)
T 1au7_A 63 LSKWLEEAEQVGALYNEK--VGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQ 140 (146)
T ss_dssp HHHHHHHCCC------------------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccCcc--cCCCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhh
Confidence 467777665443322221 223456778899999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy15514 186 R 186 (187)
Q Consensus 186 k 186 (187)
|
T Consensus 141 k 141 (146)
T 1au7_A 141 R 141 (146)
T ss_dssp H
T ss_pred h
Confidence 6
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.73 E-value=3e-18 Score=109.64 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=54.0
Q ss_pred cccccccCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 129 KRKQRRSRTTFSAQQLDELERAFER---TQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 129 ~~~~~r~r~~~t~~q~~~Le~~f~~---~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
..+.++.|+.|+.+|+.+|+..|.. ++||+..++..||..+||++.+|++||+|||+|
T Consensus 24 ~~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r 84 (87)
T 1mnm_C 24 KSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 84 (87)
T ss_dssp EESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhh
Confidence 3456667899999999999999999 999999999999999999999999999999976
No 63
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=9.3e-19 Score=107.73 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=49.9
Q ss_pred cccCCCCCHHHHHHHHHHh-hhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 133 RRSRTTFSAQQLDELERAF-ERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 133 ~r~r~~~t~~q~~~Le~~f-~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.+.+..++.+|+.+||..| ..++||+..++.+||..+||++.+|++||||||+|
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k 63 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQ 63 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccC
Confidence 3455678889999999999 99999999999999999999999999999999986
No 64
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.72 E-value=2.4e-18 Score=122.14 Aligned_cols=58 Identities=21% Similarity=0.317 Sum_probs=51.1
Q ss_pred cccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 129 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 129 ~~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
..+.++.|+.||..|+.+||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 155 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQK 155 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhh
Confidence 3567889999999999999999999999999999999999999999999999999986
No 65
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.72 E-value=3e-18 Score=109.70 Aligned_cols=54 Identities=30% Similarity=0.504 Sum_probs=51.3
Q ss_pred cccCCCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 133 RRSRTTFSAQQLDELERAF---ERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 133 ~r~r~~~t~~q~~~Le~~f---~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
++.|+.|+.+|+.+|+..| ..++||+..++..||..+||++.+|++||+|||+|
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r 58 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 58 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 5788999999999999999 99999999999999999999999999999999976
No 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=3.5e-18 Score=103.90 Aligned_cols=50 Identities=34% Similarity=0.495 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
..+|..|+.+||..|..++||+..++.+||..+||++.+|++||||||+|
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak 58 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYK 58 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhh
Confidence 56899999999999999999999999999999999999999999999986
No 67
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.71 E-value=6.2e-18 Score=107.08 Aligned_cols=57 Identities=19% Similarity=0.352 Sum_probs=53.0
Q ss_pred ccccccCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 130 RKQRRSRTTFSAQQLDELERAFER---TQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 130 ~~~~r~r~~~t~~q~~~Le~~f~~---~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.+.++.|+.|+.+|+.+|+.+|.. ++||+..+++.||..+||++.||++||||||+|
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r 64 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRR 64 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhh
Confidence 356778899999999999999987 599999999999999999999999999999986
No 68
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.71 E-value=5.7e-18 Score=107.32 Aligned_cols=53 Identities=23% Similarity=0.351 Sum_probs=49.6
Q ss_pred ccCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 134 RSRTTFSAQQLDELERAFER---TQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 134 r~r~~~t~~q~~~Le~~f~~---~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
+.|+.|+.+|+.+|+..|.. ++||+..++..||..+||++.+|++||||||+|
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r 59 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAK 59 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcc
Confidence 45567999999999999999 999999999999999999999999999999975
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.70 E-value=2.8e-18 Score=121.15 Aligned_cols=124 Identities=15% Similarity=0.163 Sum_probs=79.5
Q ss_pred CCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCch-------hhHhHhhccCCCCCCCCCCCCCccccccc
Q psy15514 61 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPH-------FLIIIEQQSSGEGSDCDSEPGIPLKRKQR 133 (187)
Q Consensus 61 ~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~-------~v~~wfq~~~~~~~~~~~~~~~~~~~~~~ 133 (187)
+++|..-.||..++...-.......|. ..+... .+.+.|+.. .++.|.....................+.+
T Consensus 20 k~~ri~lg~tq~~vg~al~~l~G~~~S-qtti~r-fE~l~ls~~nm~kLkPlL~~Wl~eae~~~~~~~~~~~~~~~~~~r 97 (155)
T 3l1p_A 20 KQKRITLGYTQADVGLTLGVLFGKVFS-QTTISR-FEALQLSLKNMSKLRPLLEKWVEEADNNENLQEISKSETLVQARK 97 (155)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHSCCCC-HHHHHH-HHTTCSCHHHHHHHHHHHHHHHHHHTTCHHHHHSSCC---CCCSC
T ss_pred HhhhheecccHHHHHHHHHhhcCcccc-cccccc-cccccCChhhHhhcchHHHHHhhhhhcccCccccccccccccCCC
Confidence 344555567877777543333222221 111111 133444332 24567765443221111111111124667
Q ss_pred ccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 134 RSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 134 r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
+.|+.|+..|+..||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 98 r~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k 150 (155)
T 3l1p_A 98 RKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQK 150 (155)
T ss_dssp CCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeecccccccc
Confidence 78999999999999999999999999999999999999999999999999986
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=6.2e-18 Score=100.66 Aligned_cols=46 Identities=30% Similarity=0.306 Sum_probs=43.1
Q ss_pred HHHHHHHHHHh-hhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 141 AQQLDELERAF-ERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 141 ~~q~~~Le~~f-~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
+.|+.+||..| ..++||+..++.+||..+||++.||++||||||+|
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k 55 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQ 55 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 45799999999 67999999999999999999999999999999976
No 71
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=117.07 Aligned_cols=57 Identities=25% Similarity=0.424 Sum_probs=54.5
Q ss_pred ccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 130 ~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
.+.++.|+.|+.+|+..||..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k 147 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQT 147 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhc
Confidence 467788999999999999999999999999999999999999999999999999986
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.67 E-value=2.5e-17 Score=117.54 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=51.3
Q ss_pred cccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 129 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 129 ~~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
..+.++.|+.||.+|+..|+..|..++||+..++..||..+||++.+|++||||||+|
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r 151 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRR 151 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhcc
Confidence 4567889999999999999999999999999999999999999999999999999987
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=2.1e-16 Score=95.87 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHhh---hcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 137 TTFSAQQLDELERAFE---RTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~---~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
..|+.+|+.+|+..|. .++||+..++..||..+||++.+|++||+|||+|
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r 55 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 55 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHH
Confidence 3689999999999999 9999999999999999999999999999999975
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.60 E-value=5.4e-16 Score=113.59 Aligned_cols=60 Identities=28% Similarity=0.472 Sum_probs=53.1
Q ss_pred cccccccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcC---------------------CChhhhhhhhcccCC
Q psy15514 127 PLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTK---------------------LTEARIQTIFIVRKM 185 (187)
Q Consensus 127 ~~~~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~---------------------l~~~~v~~WF~nrR~ 185 (187)
+..++.+|.|+.|++.|+.+|+..|..++||+..+|++||..++ |++.+|++||+|||+
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 34567889999999999999999999999999999999999987 899999999999998
Q ss_pred C
Q psy15514 186 R 186 (187)
Q Consensus 186 k 186 (187)
+
T Consensus 217 ~ 217 (221)
T 2h8r_A 217 E 217 (221)
T ss_dssp T
T ss_pred h
Confidence 6
No 75
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.59 E-value=7.5e-15 Score=91.88 Aligned_cols=58 Identities=26% Similarity=0.316 Sum_probs=53.8
Q ss_pred ccCCCCCCCCcCHHHHHHHHHHhhh-----cCCCChhhhHHHHHhhcCCchhhHhHhhccCCCC
Q psy15514 59 KRKQRRSRTTFSAQQLDELERAFER-----TQYPDIYTREELAQRTKLFPHFLIIIEQQSSGEG 117 (187)
Q Consensus 59 ~~~~~r~rt~ft~~ql~~Le~~F~~-----~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~~ 117 (187)
..+.+|.||.||..|+..|+ .|.. ++||+..++++||..++|++.+|++||||++...
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~ 76 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSG 76 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCS
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCC
Confidence 34678899999999999999 8999 9999999999999999999999999999998664
No 76
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.58 E-value=7.6e-15 Score=92.00 Aligned_cols=58 Identities=24% Similarity=0.263 Sum_probs=54.5
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhh----cCCCChhhhHHHHHhhcCCchhhHhHhhccCCCC
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFER----TQYPDIYTREELAQRTKLFPHFLIIIEQQSSGEG 117 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~----~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~~ 117 (187)
.+.+|.||.||..|+..|+..|+. ++||+..++++||..++|++.+|++||||++...
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~ 76 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSG 76 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSS
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCC
Confidence 467889999999999999999999 9999999999999999999999999999998654
No 77
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.57 E-value=2.2e-15 Score=94.98 Aligned_cols=66 Identities=74% Similarity=1.020 Sum_probs=52.9
Q ss_pred CCCCCCCCcccCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 50 CDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 50 ~~~~~~~~~~~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
|.+.++....++.++.||.||..|+..|+..|..++||+...+..||..+||++.+|++||+|++.
T Consensus 6 ~~~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~ 71 (81)
T 1fjl_A 6 CESEPGIALKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRA 71 (81)
T ss_dssp -----------CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCCCcccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 344455555678889999999999999999999999999999999999999999999999999763
No 78
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4.9e-15 Score=93.14 Aligned_cols=58 Identities=33% Similarity=0.357 Sum_probs=54.2
Q ss_pred ccCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCC
Q psy15514 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGE 116 (187)
Q Consensus 59 ~~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~ 116 (187)
.++.++.||.||..|+..||..|..++||+..++.+||..++|++.+|++||+|++..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 71 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMK 71 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999998744
No 79
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.57 E-value=8e-15 Score=93.05 Aligned_cols=61 Identities=25% Similarity=0.283 Sum_probs=56.0
Q ss_pred CcccCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCCC
Q psy15514 57 PLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGEG 117 (187)
Q Consensus 57 ~~~~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~~ 117 (187)
....+.++.||.||..|+..||..|..++||+...+..||..+||++.+|++||+|++...
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~ 77 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKS 77 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3455778899999999999999999999999999999999999999999999999987553
No 80
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=3.6e-15 Score=88.21 Aligned_cols=56 Identities=27% Similarity=0.257 Sum_probs=53.2
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhh-cCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFER-TQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~-~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
+..+|.||.|+.+|+..|+..|+. ++||+...++.||..+||+++.|++||||++.
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~ 61 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRY 61 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhcccee
Confidence 467899999999999999999999 99999999999999999999999999999874
No 81
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=7e-15 Score=90.05 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=54.6
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCCCC
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGEGS 118 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~~~ 118 (187)
.+.++.||.||..|+..||..|..++||+..++.+||..++|++.+|++||+|++....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~k 63 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEK 63 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhc
Confidence 35678899999999999999999999999999999999999999999999999886543
No 82
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=7.7e-15 Score=89.88 Aligned_cols=59 Identities=32% Similarity=0.373 Sum_probs=54.6
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCCCC
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGEGS 118 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~~~ 118 (187)
.+.++.||.||..|+..||..|..++||+..++++||..++|++.+|++||+|++....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 63 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIK 63 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhc
Confidence 36678899999999999999999999999999999999999999999999999886543
No 83
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.5e-15 Score=89.60 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCC
Q psy15514 141 AQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKM 185 (187)
Q Consensus 141 ~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~ 185 (187)
.+|+..|+.+|..+++|+..++..||..+||+...|++||+|||+
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 578999999999999999999999999999999999999999996
No 84
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.54 E-value=1e-14 Score=91.75 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=54.0
Q ss_pred ccCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCC
Q psy15514 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGE 116 (187)
Q Consensus 59 ~~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~ 116 (187)
+.+.++.||.||..|+..|+..|..++||+..++++||..++|++.+|++||+|++..
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 71 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRAR 71 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHh
Confidence 4577889999999999999999999999999999999999999999999999998643
No 85
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.53 E-value=1.5e-14 Score=90.26 Aligned_cols=57 Identities=33% Similarity=0.398 Sum_probs=53.4
Q ss_pred ccCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 59 ~~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
+.+.++.||.||..|+..||..|..++||+...+.+||..++|++.+|++||+|++.
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~ 62 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRY 62 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhc
Confidence 456788899999999999999999999999999999999999999999999999864
No 86
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.51 E-value=1.1e-14 Score=86.78 Aligned_cols=54 Identities=28% Similarity=0.415 Sum_probs=48.3
Q ss_pred CCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 62 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 62 ~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
.++.||.||..|+..||..|..++||+..++.+||..+||++.+|++||+|++.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 56 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRA 56 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcc
Confidence 567899999999999999999999999999999999999999999999999763
No 87
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.51 E-value=1.2e-14 Score=87.09 Aligned_cols=55 Identities=31% Similarity=0.318 Sum_probs=50.0
Q ss_pred CCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 61 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 61 ~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
+.++.||.||..|+..||..|..++||+...+.+||..+||++.+|++||+|++.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~ 56 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRM 56 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhh
Confidence 4567899999999999999999999999999999999999999999999999763
No 88
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.51 E-value=1.9e-14 Score=88.10 Aligned_cols=57 Identities=26% Similarity=0.348 Sum_probs=53.3
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCC
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGE 116 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~ 116 (187)
.+.++.||.||..|+..||..|..++||+..++..||..++|++.+|++||+|++..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQK 61 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHH
Confidence 367788999999999999999999999999999999999999999999999998743
No 89
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.51 E-value=1.8e-14 Score=88.24 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=53.2
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCC
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGE 116 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~ 116 (187)
.+.++.||.||..|+..|+..|..++||+..++..||..++|++.+|++||+|++..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFK 61 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHH
Confidence 367788999999999999999999999999999999999999999999999998643
No 90
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.1e-14 Score=87.97 Aligned_cols=55 Identities=36% Similarity=0.565 Sum_probs=52.2
Q ss_pred CCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 61 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 61 ~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
+.++.||.||..|+..||..|..++||+..++.+||..++|++.+|++||+|++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~ 60 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRA 60 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccc
Confidence 5678899999999999999999999999999999999999999999999999864
No 91
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.51 E-value=1.2e-14 Score=86.91 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=48.2
Q ss_pred CCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCC
Q psy15514 61 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGE 116 (187)
Q Consensus 61 ~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~ 116 (187)
+.++.||.||..|+..||..|..++||+..++.+||..+||++.+|++||+|++..
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k 57 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMK 57 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcc
Confidence 45778999999999999999999999999999999999999999999999998754
No 92
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.50 E-value=2.2e-14 Score=86.82 Aligned_cols=56 Identities=27% Similarity=0.401 Sum_probs=52.5
Q ss_pred CCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCC
Q psy15514 61 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGE 116 (187)
Q Consensus 61 ~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~ 116 (187)
+.++.||.||..|+..|+..|..++||+..++..||..+||++.+|++||+|++..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 57 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCK 57 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHH
Confidence 45788999999999999999999999999999999999999999999999998754
No 93
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.50 E-value=2.3e-14 Score=84.46 Aligned_cols=52 Identities=35% Similarity=0.434 Sum_probs=49.7
Q ss_pred CCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccC
Q psy15514 63 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSS 114 (187)
Q Consensus 63 ~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~ 114 (187)
++.||.||..|+..|+..|..++||+..++.+||..+||++.+|++||+|++
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR 52 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRR 52 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhh
Confidence 4678999999999999999999999999999999999999999999999976
No 94
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.49 E-value=4.5e-14 Score=88.03 Aligned_cols=57 Identities=26% Similarity=0.241 Sum_probs=53.2
Q ss_pred ccCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 59 ~~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
.++.++.||.||..|+..||..|..++||+..++.+||..+||++.+|++||+|++.
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~ 66 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRM 66 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 346778899999999999999999999999999999999999999999999999763
No 95
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=3.8e-14 Score=89.03 Aligned_cols=55 Identities=35% Similarity=0.629 Sum_probs=52.2
Q ss_pred CCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 61 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 61 ~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
+.++.||.||..|+..||..|..++||+..++.+||..++|++.+|++||+|++.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~ 60 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRA 60 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999998763
No 96
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.49 E-value=3e-14 Score=86.68 Aligned_cols=54 Identities=28% Similarity=0.344 Sum_probs=51.2
Q ss_pred CCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 62 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 62 ~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
+++.||.||..|+..|+..|..++||+...+..||..+||++.+|++||+|++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~ 55 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRR 55 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHH
Confidence 467899999999999999999999999999999999999999999999999763
No 97
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=3.9e-14 Score=88.98 Aligned_cols=57 Identities=39% Similarity=0.574 Sum_probs=53.4
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCC
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGE 116 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~ 116 (187)
++.++.||.||..|+..||..|..++||+..++.+||..++|++.+|++||+|++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k 61 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAK 61 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHH
Confidence 467888999999999999999999999999999999999999999999999998753
No 98
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.48 E-value=2.5e-14 Score=87.09 Aligned_cols=55 Identities=42% Similarity=0.611 Sum_probs=52.1
Q ss_pred CCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 61 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 61 ~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
+.++.||.||..|+..|+..|..++||+..++.+||..+||++.+|++||+|++.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 56 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRA 56 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhH
Confidence 5678899999999999999999999999999999999999999999999999763
No 99
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.48 E-value=5.7e-14 Score=90.65 Aligned_cols=58 Identities=26% Similarity=0.348 Sum_probs=53.8
Q ss_pred ccCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCC
Q psy15514 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGE 116 (187)
Q Consensus 59 ~~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~ 116 (187)
+++.++.||.||..|+..||..|..++||+...+.+||..+||++.+|++||+|++..
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 71 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTK 71 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhh
Confidence 4467788999999999999999999999999999999999999999999999998743
No 100
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.48 E-value=4.8e-14 Score=86.95 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=53.3
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCC
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGE 116 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~ 116 (187)
.+.++.|+.||..|+..||..|..++||+..++.+||..+||++.+|++||+|++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k 61 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVK 61 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHH
Confidence 456788999999999999999999999999999999999999999999999998743
No 101
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.48 E-value=2.2e-14 Score=85.45 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=45.1
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccC
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSS 114 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~ 114 (187)
.+.++.|+.||..|+..|+..|..++||+..++..||..+||++.+|++||+|++
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR 57 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKR 57 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999975
No 102
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.48 E-value=3.2e-14 Score=84.43 Aligned_cols=53 Identities=32% Similarity=0.362 Sum_probs=49.8
Q ss_pred CCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 63 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 63 ~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
++.||.||..|+..|+..|..++||+..++.+||..+||++.+|++||+|++.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 54 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRM 54 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHh
Confidence 57789999999999999999999999999999999999999999999999763
No 103
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.48 E-value=3.6e-14 Score=86.32 Aligned_cols=54 Identities=28% Similarity=0.294 Sum_probs=51.0
Q ss_pred CCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 62 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 62 ~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
.++.||.||..|+..||..|..++||+...+.+||..+||++.+|++||+|++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~ 55 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRM 55 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHh
Confidence 357889999999999999999999999999999999999999999999999864
No 104
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=6.5e-14 Score=85.70 Aligned_cols=55 Identities=25% Similarity=0.267 Sum_probs=51.6
Q ss_pred CCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 61 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 61 ~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
+.++.|+.||..|+..||..|..++||+..++.+||..++|++.+|++||+|++.
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 60 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRA 60 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHh
Confidence 4567889999999999999999999999999999999999999999999999864
No 105
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=6.5e-14 Score=87.99 Aligned_cols=56 Identities=29% Similarity=0.379 Sum_probs=52.5
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
.+.++.||.||..|+..|+..|..++||+..++..||..++|++.+|++||+|++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 60 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARA 60 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHH
Confidence 35678899999999999999999999999999999999999999999999998763
No 106
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3e-14 Score=89.51 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=53.0
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhhc----CCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFERT----QYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~~----~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
++.++.||.||..|+..|+..|..+ +||+..++++||..++|++.+|++||+|++.
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~ 65 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRR 65 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHH
Confidence 4678899999999999999999999 9999999999999999999999999999874
No 107
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.46 E-value=8.8e-14 Score=86.32 Aligned_cols=58 Identities=47% Similarity=0.732 Sum_probs=53.8
Q ss_pred ccCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCC
Q psy15514 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGE 116 (187)
Q Consensus 59 ~~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~ 116 (187)
.++.++.||.||..|+..|+..|..++||+..++.+||..+||++.+|++||+|++..
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 63 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAK 63 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHH
Confidence 3467788999999999999999999999999999999999999999999999998743
No 108
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.46 E-value=6.4e-14 Score=85.21 Aligned_cols=54 Identities=35% Similarity=0.422 Sum_probs=51.0
Q ss_pred CCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 62 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 62 ~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
.++.||.||..|+..||..|..++||+...+.+||..+||++.+|++||+|++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~ 55 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRY 55 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhh
Confidence 467889999999999999999999999999999999999999999999999764
No 109
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.46 E-value=7e-14 Score=85.89 Aligned_cols=52 Identities=21% Similarity=0.074 Sum_probs=48.6
Q ss_pred CCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 64 RSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 64 r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
..++.||.+|+..|+..|..++||+..++++||..+||++.+|++||+|++.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~ 56 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRY 56 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHH
Confidence 3457799999999999999999999999999999999999999999999874
No 110
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.46 E-value=7.1e-14 Score=82.38 Aligned_cols=53 Identities=34% Similarity=0.426 Sum_probs=50.3
Q ss_pred CCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccC
Q psy15514 62 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSS 114 (187)
Q Consensus 62 ~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~ 114 (187)
.++.|+.|+..|+..|+..|..++||+..++.+||..+||++.+|++||+|++
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR 54 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRR 54 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhh
Confidence 45778999999999999999999999999999999999999999999999975
No 111
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.45 E-value=3.1e-14 Score=89.89 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=47.2
Q ss_pred CCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHcCCChhhhhhhhcccCCC
Q psy15514 137 TTFSAQQLDELERAFER---TQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~---~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k 186 (187)
..|+.+++.+|+.+|.. ++||+..++.+||..+||++.||++||+|+|+|
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R 62 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRR 62 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 46899999999999987 999999999999999999999999999999975
No 112
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.44 E-value=1.1e-13 Score=87.10 Aligned_cols=56 Identities=29% Similarity=0.293 Sum_probs=48.6
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
+..++.||.||..|+..||..|..++||+...+.+||..+||++.+|++||+|++.
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~ 73 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRM 73 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhh
Confidence 35678899999999999999999999999999999999999999999999999864
No 113
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=85.34 Aligned_cols=56 Identities=21% Similarity=0.144 Sum_probs=51.4
Q ss_pred CCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCCC
Q psy15514 62 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGEG 117 (187)
Q Consensus 62 ~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~~ 117 (187)
+...|+.||..|+..||..|..++||+..++.+||..++|++.+|++||+|++...
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~ 63 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHC 63 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHH
Confidence 34458999999999999999999999999999999999999999999999987544
No 114
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.44 E-value=1.1e-13 Score=84.00 Aligned_cols=54 Identities=35% Similarity=0.463 Sum_probs=51.0
Q ss_pred CCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCC
Q psy15514 63 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGE 116 (187)
Q Consensus 63 ~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~ 116 (187)
++.||.||..|+..|+..|..++||+..++..||..+||++.+|++||+|++..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 55 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAK 55 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHH
Confidence 578899999999999999999999999999999999999999999999998643
No 115
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.44 E-value=7.9e-14 Score=89.14 Aligned_cols=56 Identities=27% Similarity=0.284 Sum_probs=49.4
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
++.++.||.||..|+..||..|..++||+..++.+||..++|++.+|++||+|++.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~ 81 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRM 81 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHH
Confidence 45778899999999999999999999999999999999999999999999999864
No 116
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.42 E-value=1.2e-13 Score=81.87 Aligned_cols=51 Identities=45% Similarity=0.662 Sum_probs=46.6
Q ss_pred CCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 65 SRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 65 ~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
.||.||..|+..|+..|..++||+...+.+||..+||++.+|++||+|++.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 52 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRA 52 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhh
Confidence 478999999999999999999999999999999999999999999999864
No 117
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.42 E-value=1.5e-13 Score=89.18 Aligned_cols=58 Identities=22% Similarity=0.204 Sum_probs=50.6
Q ss_pred ccCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCC
Q psy15514 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGE 116 (187)
Q Consensus 59 ~~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~ 116 (187)
....++.|+.||..|+..|+..|..++||+..++++||..++|++.+|++||+|++..
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 79 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYA 79 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhH
Confidence 3456678999999999999999999999999999999999999999999999998743
No 118
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.41 E-value=1.6e-13 Score=89.33 Aligned_cols=56 Identities=29% Similarity=0.287 Sum_probs=49.4
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
.+.++.||.||..|+..||..|..++||+...+.+||..++|++.+|++||+|++.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~ 87 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRM 87 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhH
Confidence 46778899999999999999999999999999999999999999999999999863
No 119
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.40 E-value=2.9e-14 Score=104.47 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=52.5
Q ss_pred CCcccCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhc---------------------CCchhhHhHhhccC
Q psy15514 56 IPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTK---------------------LFPHFLIIIEQQSS 114 (187)
Q Consensus 56 ~~~~~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~---------------------l~~~~v~~wfq~~~ 114 (187)
.+..++.+|.|+.|+..|+..|+..|..++||+..+|++||..++ +++.+|++||+|++
T Consensus 136 ~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 136 EPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp ------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 345668899999999999999999999999999999999999877 78999999999988
Q ss_pred CCC
Q psy15514 115 GEG 117 (187)
Q Consensus 115 ~~~ 117 (187)
...
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 653
No 120
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.40 E-value=2e-13 Score=79.75 Aligned_cols=49 Identities=31% Similarity=0.310 Sum_probs=45.5
Q ss_pred CCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 67 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 67 t~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
|.||..|+..||..|..++||+...+.+||..+||++.+|++||+|++.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~ 50 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRT 50 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhh
Confidence 7899999999999999999999999999999999999999999999763
No 121
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.40 E-value=3.5e-13 Score=83.33 Aligned_cols=58 Identities=17% Similarity=0.091 Sum_probs=53.1
Q ss_pred CCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCCCC
Q psy15514 61 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGEGS 118 (187)
Q Consensus 61 ~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~~~ 118 (187)
..++.|+.||..|+..|+..|..++||+..++++||..++|++.+|++||+|++....
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 62 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQR 62 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHH
Confidence 3467789999999999999999999999999999999999999999999999875543
No 122
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.38 E-value=4.4e-13 Score=82.65 Aligned_cols=53 Identities=19% Similarity=0.112 Sum_probs=49.3
Q ss_pred CCCCCCcCHHHHHHHHHHhhh-cCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 63 RRSRTTFSAQQLDELERAFER-TQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 63 ~r~rt~ft~~ql~~Le~~F~~-~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
.+.||.||..|+..||..|.. ++||+...+.+||..+||++.+|++||+|++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~ 56 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLA 56 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356799999999999999995 99999999999999999999999999999864
No 123
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.38 E-value=2.9e-13 Score=87.92 Aligned_cols=60 Identities=22% Similarity=0.210 Sum_probs=49.6
Q ss_pred cccCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHh------------------hc---CCchhhHhHhhccCCC
Q psy15514 58 LKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQR------------------TK---LFPHFLIIIEQQSSGE 116 (187)
Q Consensus 58 ~~~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~------------------~~---l~~~~v~~wfq~~~~~ 116 (187)
..++.++.|+.|+..|+..||..|..++||+...+++||.. +| |++.+|++||+|++..
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 35578899999999999999999999999999999999999 88 9999999999999864
Q ss_pred C
Q psy15514 117 G 117 (187)
Q Consensus 117 ~ 117 (187)
.
T Consensus 85 ~ 85 (99)
T 1lfb_A 85 E 85 (99)
T ss_dssp T
T ss_pred H
Confidence 3
No 124
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=7.8e-13 Score=81.89 Aligned_cols=53 Identities=17% Similarity=0.101 Sum_probs=49.2
Q ss_pred CCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCCC
Q psy15514 65 SRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGEG 117 (187)
Q Consensus 65 ~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~~ 117 (187)
.|+.||..|+..||..|..++||+..++.+||..++|++.+|++||+|++...
T Consensus 10 kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~ 62 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKV 62 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHH
T ss_pred CCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHH
Confidence 45679999999999999999999999999999999999999999999988543
No 125
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.38 E-value=7.3e-13 Score=81.66 Aligned_cols=56 Identities=11% Similarity=0.094 Sum_probs=51.8
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhh---cCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFER---TQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~---~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
++.++.|+.|+..|+..|+..|.. ++||+..+++.||..+||++.+|++||+|++.
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~ 63 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARR 63 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHh
Confidence 356788999999999999999987 99999999999999999999999999999763
No 126
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.37 E-value=5.4e-13 Score=80.12 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=52.1
Q ss_pred CCCCCCCCcCHHHHHHHHHHh---hhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCC
Q psy15514 61 KQRRSRTTFSAQQLDELERAF---ERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGE 116 (187)
Q Consensus 61 ~~~r~rt~ft~~ql~~Le~~F---~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~ 116 (187)
+.++.|+.|+..|+..|+..| ..++||+..++..||..+||++.+|++||+|++..
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r 60 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 60 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 356788999999999999999 89999999999999999999999999999998754
No 127
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.37 E-value=4.9e-13 Score=82.20 Aligned_cols=52 Identities=21% Similarity=0.165 Sum_probs=48.9
Q ss_pred CCCCCcCHHHHHHHHHHhhh-cCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 64 RSRTTFSAQQLDELERAFER-TQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 64 r~rt~ft~~ql~~Le~~F~~-~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
+.|+.||..|+..||..|.. ++||+...+..||..+||++.+|++||+|++.
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~ 55 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLA 55 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHH
Confidence 46799999999999999996 99999999999999999999999999999864
No 128
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.37 E-value=5.7e-13 Score=86.32 Aligned_cols=56 Identities=27% Similarity=0.291 Sum_probs=52.9
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhc---------------CCchhhHhHhhccCC
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTK---------------LFPHFLIIIEQQSSG 115 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~---------------l~~~~v~~wfq~~~~ 115 (187)
.+.++.|+.|+..|+..||..|..++||+...+++||..++ |++.+|++||+|++.
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~ 75 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRK 75 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999 999999999998764
No 129
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.1e-12 Score=84.89 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=52.3
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhh---------------------cCCchhhHhHhhccCC
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRT---------------------KLFPHFLIIIEQQSSG 115 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~---------------------~l~~~~v~~wfq~~~~ 115 (187)
++.++.||.|+..|+..|+..|+.++||+..++++||..+ .+++.+|++||+|++.
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~ 80 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 80 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHH
Confidence 4678899999999999999999999999999999999999 6899999999999873
No 130
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.34 E-value=4.1e-13 Score=108.61 Aligned_cols=56 Identities=29% Similarity=0.415 Sum_probs=52.6
Q ss_pred ccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccCCCC
Q psy15514 132 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMRG 187 (187)
Q Consensus 132 ~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR~k~ 187 (187)
.++.++.|+..|+..|++.|+.++||+..+|++||..+||++.||++||||||+|.
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~ 420 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 420 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhccccc
Confidence 45567889999999999999999999999999999999999999999999999983
No 131
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.34 E-value=1.2e-12 Score=80.69 Aligned_cols=53 Identities=25% Similarity=0.273 Sum_probs=50.2
Q ss_pred CCCCCCcCHHHHHHHHHHh---hhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 63 RRSRTTFSAQQLDELERAF---ERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 63 ~r~rt~ft~~ql~~Le~~F---~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
++.|+.|+..|+..|+..| ..++||+..++..||..+||++.+|++||+|++.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~ 57 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRI 57 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 5778999999999999999 8999999999999999999999999999999864
No 132
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.33 E-value=8.1e-13 Score=93.59 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=49.6
Q ss_pred ccCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 59 ~~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
..+.++.||.||..|+..||..|..++||+...+..||..++|++.+|++||+|++.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~ 154 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQ 154 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhh
Confidence 457788999999999999999999999999999999999999999999999999864
No 133
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.30 E-value=7.4e-13 Score=81.21 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=49.4
Q ss_pred CCCCCCcCHHHHHHHHHHh-hhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCCC
Q psy15514 63 RRSRTTFSAQQLDELERAF-ERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGEG 117 (187)
Q Consensus 63 ~r~rt~ft~~ql~~Le~~F-~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~~ 117 (187)
.+.+..++..|+..||..| ..++||+...+.+||..++|++.+|++||+|++...
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~ 64 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQD 64 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCC
Confidence 3455678889999999999 999999999999999999999999999999987544
No 134
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.30 E-value=2.3e-12 Score=76.34 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=47.1
Q ss_pred CCCcCHHHHHHHHHHhhh---cCCCChhhhHHHHHhhcCCchhhHhHhhccC
Q psy15514 66 RTTFSAQQLDELERAFER---TQYPDIYTREELAQRTKLFPHFLIIIEQQSS 114 (187)
Q Consensus 66 rt~ft~~ql~~Le~~F~~---~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~ 114 (187)
++.|+..|+..|+..|.. ++||+..++..||..+||++.+|++||+|++
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR 53 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRR 53 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 578999999999999999 9999999999999999999999999999976
No 135
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.30 E-value=2.2e-12 Score=89.96 Aligned_cols=58 Identities=22% Similarity=0.256 Sum_probs=50.8
Q ss_pred ccCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCC
Q psy15514 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGE 116 (187)
Q Consensus 59 ~~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~ 116 (187)
.++.++.||.||..|+..||..|..++||+...+..||..++|++.+|++||+|++..
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 141 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQR 141 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhh
Confidence 4567788999999999999999999999999999999999999999999999998743
No 136
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.30 E-value=4.2e-12 Score=80.63 Aligned_cols=47 Identities=19% Similarity=0.077 Sum_probs=45.9
Q ss_pred CcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccC
Q psy15514 68 TFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSS 114 (187)
Q Consensus 68 ~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~ 114 (187)
.||..|+.+||..|..++||+..++.+||..+||++.+|++||+|++
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR 63 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKK 63 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccc
Confidence 79999999999999999999999999999999999999999999986
No 137
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.30 E-value=1.6e-12 Score=92.27 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=46.3
Q ss_pred cccCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCC
Q psy15514 58 LKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGE 116 (187)
Q Consensus 58 ~~~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~ 116 (187)
...+.++.||.||..|+..||..|..++||+...+.+||..++|++.+|++||+|++..
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k 153 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQK 153 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHH
Confidence 34577889999999999999999999999999999999999999999999999998744
No 138
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.29 E-value=1.9e-12 Score=76.78 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccC
Q psy15514 70 SAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSS 114 (187)
Q Consensus 70 t~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~ 114 (187)
|..|+.+|+..|..++||+..++++||..+||++.+|++||+|++
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR 56 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHR 56 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccch
Confidence 578999999999999999999999999999999999999999986
No 139
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.29 E-value=3.4e-12 Score=81.33 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=51.1
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhh---cCCCChhhhHHHHHhhcCCchhhHhHhhccC
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFER---TQYPDIYTREELAQRTKLFPHFLIIIEQQSS 114 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~---~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~ 114 (187)
.+.++.|+.|+..|+..|+..|.. ++||+..++..||..+||++.+|++||+|++
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR 82 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRR 82 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345666899999999999999999 9999999999999999999999999999976
No 140
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.28 E-value=3e-12 Score=81.62 Aligned_cols=53 Identities=25% Similarity=0.273 Sum_probs=49.5
Q ss_pred CCCCCCcCHHHHHHHHHHh---hhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 63 RRSRTTFSAQQLDELERAF---ERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 63 ~r~rt~ft~~ql~~Le~~F---~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
++.|+.|+..|+..|+..| ..++||+..++..||..+||++.+|++||+|++.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~ 57 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRI 57 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5778999999999999999 8999999999999999999999999999998764
No 141
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.28 E-value=5.3e-12 Score=79.61 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=50.8
Q ss_pred CCCCCCCCcCHHHHHHHHHHhhh---cCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 61 KQRRSRTTFSAQQLDELERAFER---TQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 61 ~~~r~rt~ft~~ql~~Le~~F~~---~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
+.++.|+.|+..|+..|+..|.. ++||+..+++.||..++|++.+|++||+|++.
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~ 63 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARR 63 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHh
Confidence 56678899999999999999987 59999999999999999999999999999763
No 142
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=6.8e-12 Score=80.15 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=45.9
Q ss_pred CcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 68 TFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 68 ~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
.||..|+..||..|..++||+..++++||..++|++.+|++||+|++.
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~ 66 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRK 66 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHH
Confidence 499999999999999999999999999999999999999999999763
No 143
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=7e-12 Score=75.00 Aligned_cols=51 Identities=10% Similarity=0.002 Sum_probs=47.2
Q ss_pred CCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCCC
Q psy15514 67 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGEG 117 (187)
Q Consensus 67 t~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~~ 117 (187)
..++..|+..||..|..++||+..++.+||..++|++.+|++||+|++...
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~ 58 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQ 58 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCC
Confidence 456789999999999999999999999999999999999999999987654
No 144
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.26 E-value=5.5e-12 Score=88.51 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=53.3
Q ss_pred ccCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 59 ~~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
+++.++.||.|+..|+..|+..|..++||+..++..||..++|++.+|++||+|++.
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~ 146 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQ 146 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHh
Confidence 346778899999999999999999999999999999999999999999999999863
No 145
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.23 E-value=6.3e-12 Score=89.47 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=51.3
Q ss_pred ccCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCCCC
Q psy15514 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGEGS 118 (187)
Q Consensus 59 ~~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~~~ 118 (187)
..+.++.||.||..|+..|+..|..++||+...+..||..++|++.+|++||+|++....
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k 153 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSL 153 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSS
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhcccc
Confidence 346788999999999999999999999999999999999999999999999999876544
No 146
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.23 E-value=8.5e-12 Score=78.72 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=47.7
Q ss_pred CCCCcCHHHHHHHHHHhhh---cCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 65 SRTTFSAQQLDELERAFER---TQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 65 ~rt~ft~~ql~~Le~~F~~---~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
.++.|+..|+..|+..|.. ++||+..++..||..+||++.+|++||+|++.
T Consensus 5 rr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~ 58 (83)
T 1le8_B 5 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRA 58 (83)
T ss_dssp CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHc
Confidence 3466999999999999999 99999999999999999999999999999873
No 147
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.22 E-value=5.8e-12 Score=74.80 Aligned_cols=49 Identities=22% Similarity=0.131 Sum_probs=43.7
Q ss_pred HHHHHHHHHHh-hhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCCCCC
Q psy15514 71 AQQLDELERAF-ERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGEGSD 119 (187)
Q Consensus 71 ~~ql~~Le~~F-~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~~~~ 119 (187)
..|+.+||..| ..++||+...+.+||..++|++.+|++||+|++.....
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 35799999999 67999999999999999999999999999999865443
No 148
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.22 E-value=9.9e-12 Score=75.29 Aligned_cols=51 Identities=29% Similarity=0.279 Sum_probs=47.5
Q ss_pred CCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCCC
Q psy15514 67 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGEG 117 (187)
Q Consensus 67 t~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~~ 117 (187)
..+|..|+.+||..|..++||+...+.+||..++|++.+|++||+|++...
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~ 59 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKT 59 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhh
Confidence 457899999999999999999999999999999999999999999987543
No 149
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.18 E-value=1.5e-11 Score=86.61 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=52.7
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
.++++.||.|+..|+..|+..|..++||+...+..||..++|++.+|++||+|++.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~ 149 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQ 149 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccc
Confidence 46778899999999999999999999999999999999999999999999999863
No 150
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.16 E-value=1.6e-11 Score=89.08 Aligned_cols=112 Identities=18% Similarity=0.149 Sum_probs=75.1
Q ss_pred ccchhhcCCCCC----CCCCccchhhhcccCCCCCCCCcccc----------------cCCCCC-CCCCCCCCCCcccCC
Q psy15514 4 GDRLIKEGLCDR----GSAPSVSAISRLLRGHEGDDTSSEKK----------------LSDGEG-SDCDSEPGIPLKRKQ 62 (187)
Q Consensus 4 rdrll~e~vc~~----~~vPSvsSinrilr~~~~~~~~~~~~----------------~~~~~~-~~~~~~~~~~~~~~~ 62 (187)
++.|...|+|.. ...+|+|+|++++++........... ...+.+ ...+.....+..++.
T Consensus 36 k~~l~~~gitQ~~lA~~~GiSqs~ISr~l~~~~~~~~~kraaly~W~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~ 115 (194)
T 1ic8_A 36 KSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQREVAQQFTHAGQGGLIEEPTGDELPTKKG 115 (194)
T ss_dssp HHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSBCCCCHHHHHHHHHHHHHHTTTTHHHHCCC-------------------
T ss_pred HHHHHHcCCCHHHHHHHhCCChHHHHHHHhcCccccccccccchhhHHHhhhhhhccccCCCCCCCCCCCcccccccccC
Confidence 788888888755 34599999999998653322110000 000000 011111222344678
Q ss_pred CCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhc---------------------CCchhhHhHhhccCC
Q psy15514 63 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTK---------------------LFPHFLIIIEQQSSG 115 (187)
Q Consensus 63 ~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~---------------------l~~~~v~~wfq~~~~ 115 (187)
+|.|+.|+..|+..|+..|..++||+...|++||..++ +++.+|++||+|++.
T Consensus 116 rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~ 189 (194)
T 1ic8_A 116 RRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 189 (194)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhh
Confidence 89999999999999999999999999999999999999 999999999999874
No 151
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.04 E-value=1.8e-10 Score=69.51 Aligned_cols=49 Identities=16% Similarity=0.059 Sum_probs=44.3
Q ss_pred CCcCHHHHHHHHHHhh---hcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 67 TTFSAQQLDELERAFE---RTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 67 t~ft~~ql~~Le~~F~---~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
..|+..|+..|+..|. .++||+..++.+||..+||++.+|++||+|++.
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~ 54 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARR 54 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHH
Confidence 4799999999999999 999999999999999999999999999999864
No 152
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=9.1e-10 Score=65.61 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCC
Q psy15514 71 AQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115 (187)
Q Consensus 71 ~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~ 115 (187)
..|+..|+..|..+++|+..++..||..+||+...|++||+|++.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 468999999999999999999999999999999999999999873
No 153
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.63 E-value=2.4e-08 Score=62.89 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=44.7
Q ss_pred CCcCHHHHHHHHHHhhh---cCCCChhhhHHHHHhhcCCchhhHhHhhccC
Q psy15514 67 TTFSAQQLDELERAFER---TQYPDIYTREELAQRTKLFPHFLIIIEQQSS 114 (187)
Q Consensus 67 t~ft~~ql~~Le~~F~~---~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~ 114 (187)
.-|+..+...|+..|.. ++||+..++..||..+||++.+|.+||+|++
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR 60 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINAR 60 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45889999999999987 8999999999999999999999999999875
No 154
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.53 E-value=5.8e-08 Score=78.27 Aligned_cols=55 Identities=22% Similarity=0.208 Sum_probs=50.6
Q ss_pred CCCCCCCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCC
Q psy15514 62 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGE 116 (187)
Q Consensus 62 ~~r~rt~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~ 116 (187)
.++.++.|+..|+..|++.|+.++||+...|++||..++|++.+|++||+|++..
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~ 419 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 419 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccc
Confidence 3456788999999999999999999999999999999999999999999998754
No 155
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.37 E-value=2.5e-08 Score=52.06 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=11.7
Q ss_pred hhhhhhhcccCCC
Q psy15514 174 ARIQTIFIVRKMR 186 (187)
Q Consensus 174 ~~v~~WF~nrR~k 186 (187)
.||+|||||||+|
T Consensus 1 rQVkIWFQNRRaK 13 (37)
T 2nzz_A 1 RQIKIWFQNRRMK 13 (37)
T ss_dssp CCTTTTTTCSHHH
T ss_pred CCceeccHHHHHH
Confidence 4899999999986
No 156
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.48 E-value=0.003 Score=37.34 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=36.6
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 144 LDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 144 ~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
.+.|+..|...+.+.....+.|+.+.+|+..+|+.||-.|
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 3679999999999999999999999999999999999544
No 157
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.27 E-value=0.28 Score=28.93 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=39.0
Q ss_pred HHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCCC
Q psy15514 74 LDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGEG 117 (187)
Q Consensus 74 l~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~~ 117 (187)
.+.|+..|...+.+.-...+.|+.+.+++..+|+.||-.+....
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k~~E~ 61 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSRLPQP 61 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhccccc
Confidence 47899999999999999999999999999999999997655443
No 158
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=89.09 E-value=0.55 Score=26.40 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhc
Q psy15514 136 RTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFI 181 (187)
Q Consensus 136 r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~ 181 (187)
+..||.+....+...+... ........++|..+|++...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4578988877775444433 22112256899999999999999975
No 159
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=86.42 E-value=3.1 Score=25.24 Aligned_cols=45 Identities=7% Similarity=0.105 Sum_probs=32.6
Q ss_pred ccccCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhc
Q psy15514 132 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFI 181 (187)
Q Consensus 132 ~~r~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~ 181 (187)
.++.+..|+.++....-..+... . ...++|..+|++...|..|..
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 34456789998866555556432 2 256889999999999999974
No 160
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=85.59 E-value=6.4 Score=26.57 Aligned_cols=106 Identities=8% Similarity=0.020 Sum_probs=63.3
Q ss_pred CcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCCCCCCCCCCCCcccccccccCCCCCHHHHHHH
Q psy15514 68 TFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDEL 147 (187)
Q Consensus 68 ~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~~~~~~~~~~~~~~~~~~r~r~~~t~~q~~~L 147 (187)
.++.++...+...+... ....++|..++++...|..|...-...+.. . + .....+....++.++...+
T Consensus 25 ~~s~e~r~~ii~l~~~G-----~s~~~IA~~lgis~~TV~rwl~r~~~~G~~---~---~-~~r~gr~~~~~~~~~~~~I 92 (159)
T 2k27_A 25 PLPEVVRQRIVDLAHQG-----VRPCDISRQLRVSHGCVSKILGRYYETGSI---R---P-GVIGGSKPKVATPKVVEKI 92 (159)
T ss_dssp SSCHHHHHHHHHHHHHT-----CCHHHHHHHHTCCSHHHHHHHCCSSTTSCC---C---C-CCCCCCCCCCCCTTHHHHH
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHhcCCc---c---C-CCCCCCCCCCCCHHHHHHH
Confidence 57777666555555432 245678999999999999998654332211 0 0 1111122345777777888
Q ss_pred HHHhhhcCCCCHHHHHH-HHHH------cCCChhhhhhhhcccCC
Q psy15514 148 ERAFERTQYPDIYTREE-LAQR------TKLTEARIQTIFIVRKM 185 (187)
Q Consensus 148 e~~f~~~~~p~~~~~~~-la~~------~~l~~~~v~~WF~nrR~ 185 (187)
......++..+..+... |... ..++...|..|+...+.
T Consensus 93 ~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~ 137 (159)
T 2k27_A 93 GDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQ 137 (159)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSC
T ss_pred HHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhC
Confidence 77777665555544332 3222 24788999999866543
No 161
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=85.20 E-value=2.1 Score=22.15 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccC
Q psy15514 138 TFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 138 ~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR 184 (187)
.++.++...+...+... + ...++|..+|++...|..|...-+
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 46777765555555433 2 356889999999999999986544
No 162
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=83.65 E-value=2.2 Score=27.87 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=35.5
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 135 SRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 135 ~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
.|..||.++...+-..+..+.... ..++|..+|++...|..|..++
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~ 49 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNK 49 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhch
Confidence 567899999988877775554443 2368999999999999998664
No 163
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=79.19 E-value=11 Score=24.54 Aligned_cols=96 Identities=11% Similarity=0.160 Sum_probs=60.3
Q ss_pred CCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCCCCCCCCCCCCcccccccccCCCCCHHHHHH
Q psy15514 67 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDE 146 (187)
Q Consensus 67 t~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~~~~~~~~~~~~~~~~~~r~r~~~t~~q~~~ 146 (187)
..++..+...+...+... ....++|..+|++...|..|...-...+... . ......+++++...
T Consensus 5 ~~~s~~~r~~i~~~~~~G-----~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~---------~--~gr~~~l~~~~~~~ 68 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-----VSLHEMSRKISRSRHCIRVYLKDPVSYGTSK---------R--APRRKALSVRDERN 68 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-----CCHHHHHHHHTCCHHHHHHHHHSGGGTTCCC---------C--CCCCCSSCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHcccccCCcC---------C--CCCCCcCCHHHHHH
Confidence 346666666555555332 2456789999999999999986433221100 0 11123578888877
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHcC--CChhhhhhhhcc
Q psy15514 147 LERAFERTQYPDIYTREELAQRTK--LTEARIQTIFIV 182 (187)
Q Consensus 147 Le~~f~~~~~p~~~~~~~la~~~~--l~~~~v~~WF~n 182 (187)
+... ..++..+. .+|+..+| ++...|..|+..
T Consensus 69 i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~ 102 (141)
T 1u78_A 69 VIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKR 102 (141)
T ss_dssp HHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHH
T ss_pred HHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHH
Confidence 7766 44443333 46777888 788899988854
No 164
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=77.40 E-value=11 Score=23.80 Aligned_cols=103 Identities=8% Similarity=-0.052 Sum_probs=57.3
Q ss_pred CcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCCCCCCCCCCCCcccccccccCCCCCHHHHHHH
Q psy15514 68 TFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDEL 147 (187)
Q Consensus 68 ~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~~~~~~~~~~~~~~~~~~r~r~~~t~~q~~~L 147 (187)
.++.+....+...+... ....++|..++++...|..|...-...+... +. ....+....+++++...+
T Consensus 17 ~~s~~~r~~i~~~~~~g-----~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~------~~-~~~g~~~~~l~~~~~~~i 84 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAADG-----IRPCVISRQLRVSHGCVSKILNRYQETGSIR------PG-VIGGSKPRIATPEIENRI 84 (128)
T ss_dssp CCCHHHHHHHHHHHHTT-----CCHHHHHHHHTCCHHHHHHHHHHHHHHCCSS------CC-CCSCCCCCSSCSTHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHhhCCcc------cc-cCCCCCCCcCCHHHHHHH
Confidence 46766655555544322 2356789999999999999976422111110 00 011102235677777777
Q ss_pred HHHhhhcCCCCHHHHHHHHHHcCC-------Chhhhhhhhcc
Q psy15514 148 ERAFERTQYPDIYTREELAQRTKL-------TEARIQTIFIV 182 (187)
Q Consensus 148 e~~f~~~~~p~~~~~~~la~~~~l-------~~~~v~~WF~n 182 (187)
......++..+..+........|+ +...|..|...
T Consensus 85 ~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 85 EEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp HHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred HHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 777766655554433322222274 77888888754
No 165
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=75.58 E-value=2.9 Score=21.90 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccC
Q psy15514 138 TFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 138 ~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR 184 (187)
.++.++...+...+... . ...++|..+|++...|..|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g-~----s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-H----PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-C----CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 35555655555555433 1 356889999999999999997543
No 166
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=72.69 E-value=18 Score=23.91 Aligned_cols=105 Identities=7% Similarity=0.022 Sum_probs=62.1
Q ss_pred CCcCHHHHHHHHHHhhhcCCCChhhhHHHHHhhcCCchhhHhHhhccCCCCCCCCCCCCCcccccccccCCCCCHHHHHH
Q psy15514 67 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDE 146 (187)
Q Consensus 67 t~ft~~ql~~Le~~F~~~~yp~~~~r~~la~~~~l~~~~v~~wfq~~~~~~~~~~~~~~~~~~~~~~r~r~~~t~~q~~~ 146 (187)
..++.++...+...+... ....++|..+|++...|..|...-...+... + .....+....++.++...
T Consensus 31 ~~~s~e~r~~iv~~~~~G-----~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~------~-~~r~gr~~~~~~~~~~~~ 98 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQG-----VRPCDISRQLRVSHGCVSKILGRYYETGSIK------P-GVIGGSKPKVATPKVVEK 98 (149)
T ss_dssp SCCCHHHHHHHHHHHHTT-----CCHHHHHHHHTCCHHHHHHHHHHHHHHSCCC------C-CCCCCCCCSSSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHcCCCC------c-cCCCCCCCCCCCHHHHHH
Confidence 357777665555555322 2456789999999999999975422111100 0 111112234678888888
Q ss_pred HHHHhhhcCCCCHHHHHH-HHHHc----C--CChhhhhhhhccc
Q psy15514 147 LERAFERTQYPDIYTREE-LAQRT----K--LTEARIQTIFIVR 183 (187)
Q Consensus 147 Le~~f~~~~~p~~~~~~~-la~~~----~--l~~~~v~~WF~nr 183 (187)
+......++..+..+... |.... | ++...|..|....
T Consensus 99 I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 99 IAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred HHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 888887766555443322 22211 5 7888999998654
No 167
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=70.58 E-value=0.064 Score=37.55 Aligned_cols=30 Identities=7% Similarity=-0.002 Sum_probs=21.4
Q ss_pred cCCCCCCCCcCHHHHHHHHHHhhhcCCCCh
Q psy15514 60 RKQRRSRTTFSAQQLDELERAFERTQYPDI 89 (187)
Q Consensus 60 ~~~~r~rt~ft~~ql~~Le~~F~~~~yp~~ 89 (187)
.+.+|.||.|++.|++.|+..|+.++||+.
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 356788999999999999999999999864
No 168
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=70.36 E-value=8 Score=23.67 Aligned_cols=43 Identities=12% Similarity=0.213 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHhhhc-CCCCHHHHHHHHHHcCCChhhhhhhhcc
Q psy15514 136 RTTFSAQQLDELERAFERT-QYPDIYTREELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 136 r~~~t~~q~~~Le~~f~~~-~~p~~~~~~~la~~~~l~~~~v~~WF~n 182 (187)
|..||.++....-..+... .+ ...++|..+|++...|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 3568888776665555332 22 3568899999999999999753
No 169
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=67.62 E-value=0.05 Score=38.11 Aligned_cols=30 Identities=7% Similarity=-0.002 Sum_probs=21.5
Q ss_pred ccccccCCCCCHHHHHHHHHHhhhcCCCCH
Q psy15514 130 RKQRRSRTTFSAQQLDELERAFERTQYPDI 159 (187)
Q Consensus 130 ~~~~r~r~~~t~~q~~~Le~~f~~~~~p~~ 159 (187)
.+.+|.||.|+..|++.|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456788999999999999999999999864
No 170
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=62.77 E-value=16 Score=22.77 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHh-hhc-CCCCH-HHHHHHHHHcCCChhhhhhhhcc
Q psy15514 136 RTTFSAQQLDELERAF-ERT-QYPDI-YTREELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 136 r~~~t~~q~~~Le~~f-~~~-~~p~~-~~~~~la~~~~l~~~~v~~WF~n 182 (187)
+..||.++....-..+ ... .|++. .....+|..+|++...|..|...
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 3468888876554444 322 13332 35678999999999999999753
No 171
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=62.39 E-value=11 Score=20.23 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhc
Q psy15514 141 AQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFI 181 (187)
Q Consensus 141 ~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~ 181 (187)
+++...+...+... + ...++|..+|++...|..|..
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 56666555555433 2 356889999999999999974
No 172
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=58.12 E-value=13 Score=20.74 Aligned_cols=40 Identities=10% Similarity=-0.029 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcc
Q psy15514 138 TFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 138 ~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~n 182 (187)
.+++.+...|.-.|-... ...++|..+|++...|+.+...
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~r 54 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVAR 54 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHH
Confidence 477888888877654332 3568999999999999987643
No 173
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=57.79 E-value=11 Score=23.47 Aligned_cols=40 Identities=15% Similarity=0.059 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcc
Q psy15514 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~n 182 (187)
..+|+.+..+|.-.++-- ...++|..+|++...|+.+..+
T Consensus 33 ~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~r 72 (99)
T 1p4w_A 33 KRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKS 72 (99)
T ss_dssp SSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHH
Confidence 468999999997755322 2478999999999999988754
No 174
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=57.47 E-value=13 Score=22.36 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCCChhhhhhhhc
Q psy15514 138 TFSAQQLDELERAFER-----TQYPDIYTREELAQRTKLTEARIQTIFI 181 (187)
Q Consensus 138 ~~t~~q~~~Le~~f~~-----~~~p~~~~~~~la~~~~l~~~~v~~WF~ 181 (187)
.++.++...+...|.. +.+.+..+...+...+|++...+...|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678888999988854 4467777777777888998888776663
No 175
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=57.43 E-value=12 Score=24.96 Aligned_cols=48 Identities=10% Similarity=0.262 Sum_probs=35.2
Q ss_pred cccCCCCCHHHHHHHHHHh-hhcCCCCHHHHHHHHH----Hc--CCChhhhhhhhccc
Q psy15514 133 RRSRTTFSAQQLDELERAF-ERTQYPDIYTREELAQ----RT--KLTEARIQTIFIVR 183 (187)
Q Consensus 133 ~r~r~~~t~~q~~~Le~~f-~~~~~p~~~~~~~la~----~~--~l~~~~v~~WF~nr 183 (187)
++.|..+|.+|...|-..+ +.++-.... +||. .+ +++...|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 4678899999999999888 566554433 4455 67 78888888887653
No 176
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=57.39 E-value=19 Score=20.55 Aligned_cols=41 Identities=7% Similarity=-0.031 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccC
Q psy15514 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..++.+.+..+......+ ..+||..+|++...|..|=..++
T Consensus 9 ~~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHcCCC
Confidence 357788877776555433 56889999999999999987654
No 177
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=56.93 E-value=15 Score=20.97 Aligned_cols=44 Identities=20% Similarity=0.058 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhc
Q psy15514 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFI 181 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~ 181 (187)
..+++.+..+|.-.|..... ......++|..+|++...|+.+..
T Consensus 9 ~~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ 52 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIEN 52 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHH
Confidence 35788888889887752100 011356889999999999998764
No 178
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=55.26 E-value=17 Score=22.39 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcC--CChhhhhhhhc
Q psy15514 136 RTTFSAQQLDELERAFER-----TQYPDIYTREELAQRTK--LTEARIQTIFI 181 (187)
Q Consensus 136 r~~~t~~q~~~Le~~f~~-----~~~p~~~~~~~la~~~~--l~~~~v~~WF~ 181 (187)
...++.+++..|..+|.. +.+.+..+...+...+| ++..+|+.+|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 356889999999988844 45889998888888876 56777777774
No 179
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=55.21 E-value=8 Score=21.24 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999997764
No 180
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=54.45 E-value=8.6 Score=22.88 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcc
Q psy15514 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~n 182 (187)
..+++.+..+|.-.++- ....++|..+|++...|+.+..+
T Consensus 20 ~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r 59 (82)
T 1je8_A 20 NQLTPRERDILKLIAQG------LPNKMIARRLDITESTVKVHVKH 59 (82)
T ss_dssp GGSCHHHHHHHHHHTTT------CCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHH
Confidence 46899999988874322 24678999999999999987654
No 181
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=53.75 E-value=27 Score=23.19 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=31.1
Q ss_pred cCCCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCCChh
Q psy15514 135 SRTTFSAQQLDELERAFER-----TQYPDIYTREELAQRTKLTEA 174 (187)
Q Consensus 135 ~r~~~t~~q~~~Le~~f~~-----~~~p~~~~~~~la~~~~l~~~ 174 (187)
.+..+|.+|+..|..+|.. +.+.+..+...+...+|....
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 3467999999999999854 457888888888888876543
No 182
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=53.50 E-value=9.5 Score=21.07 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=20.1
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|...++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 56899999999999999998754
No 183
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=53.40 E-value=7 Score=23.73 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcc
Q psy15514 138 TFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 138 ~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~n 182 (187)
.++..+..+|.-.|-... ...++|..+|++...|+.+...
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~r 76 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHY 76 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHH
Confidence 366777777776553332 4678999999999999987653
No 184
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=53.07 E-value=22 Score=20.04 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcc
Q psy15514 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~n 182 (187)
..+++.+...|.-.+ ..+ ...++|..+|++...|..+...
T Consensus 10 ~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~ 49 (74)
T 1fse_A 10 PLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISN 49 (74)
T ss_dssp CCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHH
Confidence 468889998887743 222 3568999999999999887754
No 185
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=52.71 E-value=9.2 Score=22.85 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCCChhhhhhhhc
Q psy15514 137 TTFSAQQLDELERAFER-----TQYPDIYTREELAQRTKLTEARIQTIFI 181 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~-----~~~p~~~~~~~la~~~~l~~~~v~~WF~ 181 (187)
..++.+++..|...|.. +.+.+..+...+...+|++...|..+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 45788899999988843 4578888888888889999998888874
No 186
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=51.90 E-value=18 Score=20.29 Aligned_cols=43 Identities=28% Similarity=0.364 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhc
Q psy15514 138 TFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFI 181 (187)
Q Consensus 138 ~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~ 181 (187)
.+++.+..+|.-.|....+-. ....++|..+|++...|+.+..
T Consensus 5 ~L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~~~ 47 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEA 47 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHHHH
Confidence 478888888888773211111 1356889999999999988764
No 187
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=51.84 E-value=23 Score=21.45 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=30.8
Q ss_pred cCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcc
Q psy15514 135 SRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 135 ~r~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~n 182 (187)
....+|..+..+|.-.++-. ...++|..+|++...|+....+
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~~~~~~ 67 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIEYSLTS 67 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHH
Confidence 44679999999998776322 3678999999999999876643
No 188
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=51.00 E-value=10 Score=21.21 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.2
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|..+++
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56899999999999999998765
No 189
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=50.57 E-value=8.2 Score=22.51 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=20.2
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 56899999999999999997654
No 190
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=50.17 E-value=11 Score=21.45 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999997764
No 191
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=50.01 E-value=14 Score=22.44 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCCChhhhhhhhc
Q psy15514 139 FSAQQLDELERAFER-----TQYPDIYTREELAQRTKLTEARIQTIFI 181 (187)
Q Consensus 139 ~t~~q~~~Le~~f~~-----~~~p~~~~~~~la~~~~l~~~~v~~WF~ 181 (187)
++.++...|...|.. +.+.+..+...+...+|++...+..+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567788888888743 4467888888877888999888877764
No 192
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=49.17 E-value=13 Score=21.08 Aligned_cols=23 Identities=4% Similarity=-0.077 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999997764
No 193
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=47.78 E-value=13 Score=21.54 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=20.5
Q ss_pred HHHHHHHcCCChhhhhhhhcccCC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRKM 185 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR~ 185 (187)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 468999999999999999977653
No 194
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=47.60 E-value=13 Score=20.52 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=20.5
Q ss_pred HHHHHHHcCCChhhhhhhhcccCC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRKM 185 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR~ 185 (187)
..+||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 568999999999999999877653
No 195
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=47.37 E-value=26 Score=22.63 Aligned_cols=40 Identities=8% Similarity=-0.031 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccC
Q psy15514 138 TFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 138 ~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR 184 (187)
.++.+++..|......+ ..+||..+|++...|..|-..++
T Consensus 70 ~~~~~~l~~~R~~~gls-------q~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 70 TVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp TCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHcCCC-------HHHHHHHHCCCHHHHHHHHCCCC
Confidence 35566666665444333 45789999999999999987654
No 196
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=47.37 E-value=13 Score=21.02 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|...++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999987754
No 197
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=47.19 E-value=29 Score=22.32 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcc
Q psy15514 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~n 182 (187)
..++.++...+...+... + ...++|..+|++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 457888877777666543 2 2567899999999999999864
No 198
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=46.57 E-value=13 Score=21.11 Aligned_cols=23 Identities=26% Similarity=0.236 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|...++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 56899999999999999997754
No 199
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=46.23 E-value=66 Score=21.72 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=58.4
Q ss_pred CCCcCHHHHHHHHHHhhh-----cCCCChhhhHHHHHhhcCCc--hhhHhHhhccCCCCCCCCCCCCCcccccccccCCC
Q psy15514 66 RTTFSAQQLDELERAFER-----TQYPDIYTREELAQRTKLFP--HFLIIIEQQSSGEGSDCDSEPGIPLKRKQRRSRTT 138 (187)
Q Consensus 66 rt~ft~~ql~~Le~~F~~-----~~yp~~~~r~~la~~~~l~~--~~v~~wfq~~~~~~~~~~~~~~~~~~~~~~r~r~~ 138 (187)
++.+|++|+.+|...|.. +-+.+..+...+...+|+.+ ..+...+..-.......-....... --.......
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~d~d~~~~i~~~ef~~-~~~~~~~~~ 80 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLA-LMSRQLKSN 80 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTTCSSCSSSBCTTHHHH-HHTSSCCSS
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChhHHHHHHHHHHhCcCCCccchHHHHHH-HHHHhcccC
Confidence 467899999999999854 34677777777777777544 4454444332222211111000000 000011111
Q ss_pred CCHHHHHHHHHHhhh--cCCCCHHHHHHHHHHcC--CChhhhhhhh
Q psy15514 139 FSAQQLDELERAFER--TQYPDIYTREELAQRTK--LTEARIQTIF 180 (187)
Q Consensus 139 ~t~~q~~~Le~~f~~--~~~p~~~~~~~la~~~~--l~~~~v~~WF 180 (187)
-+.+.+...=+.|.. +.|.+..+...+...+| ++...|...|
T Consensus 81 ~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~~~~~ei~~l~ 126 (176)
T 2lhi_A 81 DSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDDML 126 (176)
T ss_dssp HHHHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCcccchHHHHHHH
Confidence 123333333444544 34788888777777665 4555555444
No 200
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=46.13 E-value=15 Score=22.44 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcc
Q psy15514 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~n 182 (187)
..+++.+..+|.-.++-- ...++|..+|++...|+.+..+
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r 65 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSR 65 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHH
Confidence 458888988888754332 2578999999999999987654
No 201
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=45.28 E-value=29 Score=20.65 Aligned_cols=44 Identities=25% Similarity=0.208 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhc
Q psy15514 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFI 181 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~ 181 (187)
..+++.+..+|.-.|....- ......++|..+|++...|+.+..
T Consensus 17 ~~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ 60 (87)
T 1tty_A 17 KTLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEV 60 (87)
T ss_dssp TTSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHH
Confidence 35788888888877741100 011356889999999999998764
No 202
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=44.47 E-value=16 Score=26.36 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=32.7
Q ss_pred cCCCCCHHHH-HHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 135 SRTTFSAQQL-DELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 135 ~r~~~t~~q~-~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
.+...+.+++ ..-...|....|-... ...||+++|++..-|-.+|.|+
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G~~~~s-~~~IA~~aGvs~~tlY~hF~~K 73 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGDAETFS-VRKLAASLGTDSSSLYRHFRNK 73 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSSCCCCC-HHHHHHHTTSCHHHHHHHTSSH
T ss_pred cchhhHHHHHHHHHHHHHHhcCcccCC-HHHHHHHhCcCHHHHHHHcCCH
Confidence 3445666554 3445667777765443 5578999999999999999885
No 203
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=43.95 E-value=16 Score=20.56 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56899999999999999987754
No 204
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=43.87 E-value=28 Score=22.15 Aligned_cols=40 Identities=10% Similarity=0.152 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcc
Q psy15514 138 TFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 138 ~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~n 182 (187)
.+++.+...+.-.|.... ...++|..+|++...|+.|...
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~r 61 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKR 61 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHH
Confidence 477888888877654442 3578999999999999988754
No 205
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=43.87 E-value=15 Score=20.90 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.2
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999998765
No 206
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=43.86 E-value=14 Score=25.13 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=31.9
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 144 LDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 144 ~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
+..-...|....| . .....||++.|++...|-.+|.++
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK 58 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTR 58 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSH
T ss_pred HHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCH
Confidence 4455667888888 5 688899999999999999999875
No 207
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=43.37 E-value=4.8 Score=28.27 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=13.5
Q ss_pred ccccchhhcCCCCCCCCCccchhhhccc
Q psy15514 2 CWGDRLIKEGLCDRGSAPSVSAISRLLR 29 (187)
Q Consensus 2 ~~rdrll~e~vc~~~~vPSvsSinrilr 29 (187)
.||||||++|. +.|+.++.
T Consensus 110 ~wRdrLi~~gd---------~al~e~~~ 128 (176)
T 2p0t_A 110 RWRDRLIAGDD---------ADLEKFVI 128 (176)
T ss_dssp HHHHHHHHSCH---------HHHHHHHH
T ss_pred HHHHHHHhCCH---------HHHHHHHH
Confidence 48999998773 55666665
No 208
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=42.59 E-value=16 Score=22.03 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|...++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 56899999999999999997754
No 209
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=42.56 E-value=13 Score=20.65 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=17.5
Q ss_pred HHHHHHHcCCChhhhhhhh
Q psy15514 162 REELAQRTKLTEARIQTIF 180 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF 180 (187)
..+||+.+|++..-|-.|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 5689999999999999997
No 210
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=41.82 E-value=12 Score=25.81 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=29.3
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 145 DELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 145 ~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
......|....|-.. ....||++.|++...+-.+|.++
T Consensus 38 ~aa~~l~~~~G~~~~-tv~~Ia~~agvs~~t~Y~~F~sK 75 (218)
T 3dcf_A 38 KVATELFREKGYYAT-SLDDIADRIGFTKPAIYYYFKSK 75 (218)
T ss_dssp HHHHHHHHHTCTTTC-CHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHcCcccC-cHHHHHHHhCCCHHHHHHHcCCH
Confidence 344566887776543 35688999999999999999875
No 211
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=41.44 E-value=29 Score=19.84 Aligned_cols=39 Identities=10% Similarity=0.114 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcc
Q psy15514 138 TFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 138 ~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~n 182 (187)
.+++.+...|.-.+. .+ ...++|..+|++...|+.+...
T Consensus 16 ~L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r 54 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRAN 54 (79)
T ss_dssp HHCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 367777777766432 22 3468899999999999887643
No 212
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=41.19 E-value=12 Score=26.05 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=29.8
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 144 LDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 144 ~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
+......|....|-.. ....||++.|++...|-.+|.++
T Consensus 34 l~aa~~lf~~~G~~~~-tv~~IA~~agvs~~t~Y~~F~sK 72 (215)
T 2qko_A 34 VNAAIEVLAREGARGL-TFRAVDVEANVPKGTASNYFPSR 72 (215)
T ss_dssp HHHHHHHHHHTCTTTC-CHHHHHHHSSSTTTCHHHHCSCH
T ss_pred HHHHHHHHHHhChhhc-cHHHHHHHcCCCcchHHHhCCCH
Confidence 3344566888776543 35688999999999999999875
No 213
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=40.35 E-value=17 Score=21.35 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=20.3
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999998765
No 214
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=40.18 E-value=55 Score=19.10 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=31.7
Q ss_pred hhhHHHHHhhcCCchhhHhHhhccCCCCCCCCCCCCCcccccccccCCCCCHHHHHHHHH
Q psy15514 90 YTREELAQRTKLFPHFLIIIEQQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELER 149 (187)
Q Consensus 90 ~~r~~la~~~~l~~~~v~~wfq~~~~~~~~~~~~~~~~~~~~~~r~r~~~t~~q~~~Le~ 149 (187)
+...++|..+|++...+..|.....-.. + .+......-.|+.+++..|..
T Consensus 6 ~~i~e~A~~~gvs~~tlR~ye~~~gl~~---------p-~r~~~~g~R~Y~~~dl~~l~~ 55 (81)
T 2jml_A 6 LRIRTIARMTGIREATLRAWERRYGFPR---------P-LRSEGNNYRVYSREEVEAVRR 55 (81)
T ss_dssp EEHHHHHHTTSTTHHHHHHHHHHTCCSC---------C-BSSSCSSSCEECHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHhCCCCC---------C-cCCCCCCeeecCHHHHHHHHH
Confidence 4567899999999999999975311100 0 011101234599999998863
No 215
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=39.66 E-value=20 Score=24.51 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=32.4
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 143 QLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 143 q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
=+..-...|....| . .....||++.|++...|-.+|.++
T Consensus 18 Il~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK 56 (196)
T 2qwt_A 18 VLEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTK 56 (196)
T ss_dssp HHHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCH
Confidence 34556677888888 6 578899999999999999999875
No 216
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=39.38 E-value=13 Score=26.25 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=32.2
Q ss_pred ccCCCCCHHHH-HHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 134 RSRTTFSAQQL-DELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 134 r~r~~~t~~q~-~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
+.+...+.+++ ......|....|-.. ....||.++|++..-|-..|.++
T Consensus 20 ~~r~~~tr~~Il~aA~~l~~~~G~~~~-s~~~IA~~aGvs~~tlY~~F~~K 69 (211)
T 3fiw_A 20 QGMTKMNRETVITEALDLLDEVGLDGV-STRRLAKRLGVEQPSLYWYFRTK 69 (211)
T ss_dssp ----CCCHHHHHHHHHHHHHHHCGGGC-CHHHHHHHHTSCTHHHHTTCSSH
T ss_pred ccccccCHHHHHHHHHHHHHhcCcccC-CHHHHHHHhCCChhHHHHHcCCH
Confidence 34455665544 344566777765433 35688999999999999999875
No 217
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=39.33 E-value=21 Score=20.44 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=19.6
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|-.+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999987654
No 218
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=39.07 E-value=20 Score=20.71 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56899999999999999987764
No 219
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=37.97 E-value=21 Score=20.68 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46899999999999999987764
No 220
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=37.77 E-value=62 Score=21.46 Aligned_cols=108 Identities=15% Similarity=0.151 Sum_probs=58.6
Q ss_pred CcCHHHHHHHHHHhhh-------cCCCChhhhHHHHHhhcCCch--hhHhHhhccCCCCCCCCCCCCCcc------cccc
Q psy15514 68 TFSAQQLDELERAFER-------TQYPDIYTREELAQRTKLFPH--FLIIIEQQSSGEGSDCDSEPGIPL------KRKQ 132 (187)
Q Consensus 68 ~ft~~ql~~Le~~F~~-------~~yp~~~~r~~la~~~~l~~~--~v~~wfq~~~~~~~~~~~~~~~~~------~~~~ 132 (187)
-+|..|+..|...|.. .-+.+..+...+...+|+.+. .|...... .......... -...
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t~~el~~~~~~------d~~~~g~i~f~eFl~~~~~~ 75 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHGGT------KKMGEKAYKLEEILPIYEEM 75 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCCHHHHHTTTCC------SSTTSCEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHcc------cccCCCcccHHHHHHHHHHh
Confidence 3689999999998852 236777777776777776543 34332211 0000000000 0001
Q ss_pred cccCCCCCHHHHHHHHHHhhh--cCCCCHHHHHHHHHHcC--CChhhhhhhhc
Q psy15514 133 RRSRTTFSAQQLDELERAFER--TQYPDIYTREELAQRTK--LTEARIQTIFI 181 (187)
Q Consensus 133 ~r~r~~~t~~q~~~Le~~f~~--~~~p~~~~~~~la~~~~--l~~~~v~~WF~ 181 (187)
......-+.+.+...=+.|.. +.|.+..+...+...+| ++...|...|.
T Consensus 76 ~~~~~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~ 128 (159)
T 3i5g_C 76 SSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFT 128 (159)
T ss_dssp TTCCTTCCHHHHHHHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 111123344555444455544 34788888888888877 56677766653
No 221
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=37.48 E-value=83 Score=20.52 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=30.1
Q ss_pred hHHHHHhhcCCchhhHhHhhccCCCCCCCCCCCCCcccccccccCCCCCHHHHHHHHHH
Q psy15514 92 REELAQRTKLFPHFLIIIEQQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERA 150 (187)
Q Consensus 92 r~~la~~~~l~~~~v~~wfq~~~~~~~~~~~~~~~~~~~~~~r~r~~~t~~q~~~Le~~ 150 (187)
..++|..+|++...+..|....--.. ..+ .......|+.+++..|...
T Consensus 3 I~e~A~~~gvs~~tLR~ye~~Gll~p----------~~r-~~~g~R~Y~~~dl~~l~~I 50 (135)
T 1q06_A 3 ISDVAKITGLTSKAIRFYEEKGLVTP----------PMR-SENGYRTYTQQHLNELTLL 50 (135)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTTCSCC----------CEE-CTTSCEECCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCCCC----------Ccc-CCCCCeeeCHHHHHHHHHH
Confidence 46789999999999999975321110 001 1112235899998888643
No 222
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=37.42 E-value=14 Score=27.69 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=27.8
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 146 ELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 146 ~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
.....|....|-. ....+||++.|++...|-.+|.++
T Consensus 128 aa~~l~~~~G~~~-~T~~~IA~~AGvs~gtlY~yF~sK 164 (311)
T 4ich_A 128 TAWRLIARRGYHN-VRIHDIASELGTSNATIHYHFPSK 164 (311)
T ss_dssp HHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHcCCcc-CCHHHHHHHhCCCchhHHHhCCCH
Confidence 3445577766643 335688999999999999999875
No 223
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=37.19 E-value=44 Score=21.90 Aligned_cols=40 Identities=3% Similarity=0.081 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhc
Q psy15514 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFI 181 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~ 181 (187)
..++.++...+-..+... + ...++|..+|++...|..|..
T Consensus 31 ~~~s~e~r~~iv~~~~~G-~----s~~~iA~~lgis~~TV~rw~~ 70 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQG-V----RPCDISRQLRVSHGCVSKILG 70 (149)
T ss_dssp SCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 357888777666666432 2 245789999999999999985
No 224
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=37.07 E-value=20 Score=21.47 Aligned_cols=23 Identities=9% Similarity=0.203 Sum_probs=20.1
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56899999999999999997764
No 225
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=36.54 E-value=49 Score=18.92 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCC--Chhh---hhhhhc
Q psy15514 137 TTFSAQQLDELERAFER-----TQYPDIYTREELAQRTKL--TEAR---IQTIFI 181 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~-----~~~p~~~~~~~la~~~~l--~~~~---v~~WF~ 181 (187)
..++.+++..|...|.. +.+.+..+...+...+|. +... |..+|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEAR 60 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45677888888888743 457888888888888874 4556 666664
No 226
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=36.15 E-value=24 Score=21.37 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|..+++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999987754
No 227
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=35.05 E-value=47 Score=23.19 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhh
Q psy15514 143 QLDELERAFERTQYPDIYTREELAQRTKLTEARIQ 177 (187)
Q Consensus 143 q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~ 177 (187)
-+..|...=+...|.+......+|..|+|+..+|.
T Consensus 27 li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V~ 61 (181)
T 3i9v_2 27 IMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVM 61 (181)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHHH
Confidence 34556555555689999999999999999998873
No 228
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=35.01 E-value=21 Score=20.87 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=19.7
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|...++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56899999999999999987653
No 229
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=34.86 E-value=38 Score=22.11 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhc
Q psy15514 138 TFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFI 181 (187)
Q Consensus 138 ~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~ 181 (187)
.+++.+..+|. .|-.. ....++|..+|++...|+.+..
T Consensus 109 ~L~~~~r~v~~-~~~~g-----~s~~EIA~~lgis~~tV~~~~~ 146 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG-----YSYREIATILSKNLKSIDNTIQ 146 (164)
T ss_dssp HSCHHHHHHHH-HHTTT-----CCHHHHHHHHTCCHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC-----CCHHHHHHHHCCCHHHHHHHHH
Confidence 46677777776 33222 2467899999999999998764
No 230
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=34.75 E-value=26 Score=19.78 Aligned_cols=21 Identities=19% Similarity=0.044 Sum_probs=18.1
Q ss_pred HHHHHHHcCCChhhhhhhhcc
Q psy15514 162 REELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~n 182 (187)
..++|..||++...|..|-.+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 457899999999999999765
No 231
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=34.21 E-value=28 Score=20.07 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.8
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|-.+++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 56899999999999999987764
No 232
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=34.18 E-value=26 Score=20.76 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|..+++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999987754
No 233
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=34.14 E-value=29 Score=20.07 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=18.7
Q ss_pred HHHHHHHcCCChhhhhhhhcc
Q psy15514 162 REELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~n 182 (187)
..+||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467899999999999999877
No 234
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=33.62 E-value=22 Score=22.61 Aligned_cols=40 Identities=13% Similarity=0.112 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcc
Q psy15514 138 TFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 138 ~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~n 182 (187)
.+++.+...+.-.|.... ...++|..+|++...|+.+...
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~r 64 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRR 64 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHH
Confidence 367777777776654332 3578999999999999987653
No 235
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=33.57 E-value=24 Score=20.58 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=18.8
Q ss_pred HHHHHHHcCCChhhhhhhhcc
Q psy15514 162 REELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~n 182 (187)
..+||+.+|++..-|--|..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 678999999999999999754
No 236
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=33.36 E-value=81 Score=19.54 Aligned_cols=43 Identities=7% Similarity=0.152 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHhhh----cCCCCHHHHHHHHHHcCCChhhhhhhh
Q psy15514 138 TFSAQQLDELERAFER----TQYPDIYTREELAQRTKLTEARIQTIF 180 (187)
Q Consensus 138 ~~t~~q~~~Le~~f~~----~~~p~~~~~~~la~~~~l~~~~v~~WF 180 (187)
.++.++...+...|.. +.+.+..+...+...+|++...+...|
T Consensus 8 ~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~ 54 (106)
T 1eh2_A 8 AVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVW 54 (106)
T ss_dssp SSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHH
Confidence 4678888888888854 446777777777778888888776655
No 237
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=32.44 E-value=66 Score=18.54 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcC--CChhhhhhhhc
Q psy15514 138 TFSAQQLDELERAFER-----TQYPDIYTREELAQRTK--LTEARIQTIFI 181 (187)
Q Consensus 138 ~~t~~q~~~Le~~f~~-----~~~p~~~~~~~la~~~~--l~~~~v~~WF~ 181 (187)
.++.+++..|...|.. +.+.+..+...+...+| ++...|..+|.
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4788888888888843 34677777777777776 44566666663
No 238
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=32.28 E-value=32 Score=20.66 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|..+++
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999998764
No 239
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=31.98 E-value=22 Score=21.32 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcc
Q psy15514 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~n 182 (187)
..+++.+..+|.-.+.-- ...++|..+|++...|+.+..+
T Consensus 28 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r 67 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKGY------SNQEIASASHITIKTVKTHVSN 67 (91)
T ss_dssp GGCCSHHHHHHHHHHTTC------CTTHHHHHHTCCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHH
Confidence 457888888887754322 2457899999999999987654
No 240
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=31.31 E-value=28 Score=20.65 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=19.7
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|..+++
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999987654
No 241
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=30.86 E-value=1.2e+02 Score=20.05 Aligned_cols=41 Identities=2% Similarity=0.059 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcc
Q psy15514 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~n 182 (187)
..++.++...+...+... + ...++|..+|++...|..|+..
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 468888777776666543 2 3457899999999999999864
No 242
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=30.80 E-value=19 Score=24.50 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=31.3
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 144 LDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 144 ~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
+......|....| . .....||++.|++..-|-..|.++
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK 59 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSR 59 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCH
Confidence 3445567888888 6 478899999999999999999875
No 243
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=30.80 E-value=30 Score=23.56 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=12.0
Q ss_pred CCCCHHHHHHHHHHhhh
Q psy15514 137 TTFSAQQLDELERAFER 153 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~ 153 (187)
..+|.+|+..|....+.
T Consensus 57 g~Lt~~ei~~l~~~i~~ 73 (152)
T 3iz6_M 57 GELSAEEMDRLMAVVHN 73 (152)
T ss_dssp TTSCHHHHHHHHHHHHS
T ss_pred CcCCHHHHHHHHHHHHh
Confidence 34788888888766654
No 244
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=30.73 E-value=52 Score=18.66 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcC--CChhhhhhhhc
Q psy15514 137 TTFSAQQLDELERAFER-----TQYPDIYTREELAQRTK--LTEARIQTIFI 181 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~-----~~~p~~~~~~~la~~~~--l~~~~v~~WF~ 181 (187)
..++.+++..|...|.. +.+.+..+...+...+| ++...|...|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45788899999988854 34567777777777766 45556666653
No 245
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=30.69 E-value=83 Score=20.13 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHhhh------cCCCCHHHHHHHHHHcC--CChhhhhhhhc
Q psy15514 136 RTTFSAQQLDELERAFER------TQYPDIYTREELAQRTK--LTEARIQTIFI 181 (187)
Q Consensus 136 r~~~t~~q~~~Le~~f~~------~~~p~~~~~~~la~~~~--l~~~~v~~WF~ 181 (187)
-..++.+++..|...|.. +.+.+..+...+...+| ++...+..+|.
T Consensus 9 ~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 9 VEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 356889999999988743 45678888877777777 55666666663
No 246
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=30.60 E-value=22 Score=24.78 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=28.7
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 146 ELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 146 ~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
.-...|....|-... ...||++.|++..-|-.+|.|+
T Consensus 43 aA~~lf~~~G~~~~t-~~~IA~~AGvs~~tlY~~F~sK 79 (221)
T 3g7r_A 43 TATRIFYAEGIHSVG-IDRITAEAQVTRATLYRHFSGK 79 (221)
T ss_dssp HHHHHHHHHCSTTSC-HHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHhCcccCC-HHHHHHHhCCCHHHHHHHCCCH
Confidence 344568777765444 5678999999999999999875
No 247
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=30.48 E-value=22 Score=23.50 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=18.9
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
...+|..+|++..+++.|+-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 46789999999999999985443
No 248
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=30.42 E-value=1.2e+02 Score=20.02 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=32.6
Q ss_pred hhhHHHHHhhcCCchhhHhHhhccCCCCCCCCCCCCCcccccccccCCCCCHHHHHHHHHH
Q psy15514 90 YTREELAQRTKLFPHFLIIIEQQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERA 150 (187)
Q Consensus 90 ~~r~~la~~~~l~~~~v~~wfq~~~~~~~~~~~~~~~~~~~~~~r~r~~~t~~q~~~Le~~ 150 (187)
+...++|..+|++...+..|....--... .+.......|+.+++..|...
T Consensus 3 ~~I~e~A~~~gvs~~tLR~Ye~~GLl~p~-----------~r~~~g~R~Y~~~dl~~l~~I 52 (142)
T 3gp4_A 3 LNIKEASEKSGVSADTIRYYERIGLIPPI-----------HRNESGVRKFGAEDLRWILFT 52 (142)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHHTSSCCC-----------CBCTTSCBCBCHHHHHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHHHHHCCCCCCC-----------cCCCCCCeeeCHHHHHHHHHH
Confidence 35678899999999999999764221110 011123356899998888644
No 249
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=30.19 E-value=27 Score=25.20 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=34.0
Q ss_pred cCCCCCHHHH-HHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 135 SRTTFSAQQL-DELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 135 ~r~~~t~~q~-~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
.+...+.+++ ..-...|....|-... ...||+++|++..-|-..|.|+
T Consensus 15 ~r~~~tr~~Il~AA~~l~~e~G~~~~S-~~~IA~~aGvs~~tlY~hF~sK 63 (243)
T 2g7l_A 15 AKPALSRRWIVDTAVALMRAEGLEKVT-MRRLAQELDTGPASLYVYVANT 63 (243)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHCSSSCC-HHHHHHHTTSCHHHHTTTCCSH
T ss_pred CCcccCHHHHHHHHHHHHHhcCchhcC-HHHHHHHHCCChhHHHHHcCCH
Confidence 3445666554 3445667777765443 5688999999999999999875
No 250
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=29.90 E-value=1e+02 Score=19.10 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=30.9
Q ss_pred hhHHHHHhhcCCchhhHhHhhccCCCCCCCCCCCCCcccccccccCCCCCHHHHHHHHHH
Q psy15514 91 TREELAQRTKLFPHFLIIIEQQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERA 150 (187)
Q Consensus 91 ~r~~la~~~~l~~~~v~~wfq~~~~~~~~~~~~~~~~~~~~~~r~r~~~t~~q~~~Le~~ 150 (187)
...++|..+|++...+..|....--.. . .......-.|+.+++..|...
T Consensus 3 ~i~e~A~~~gvs~~tLR~ye~~Gll~p----------~-~r~~~g~R~Y~~~dl~~l~~I 51 (108)
T 2vz4_A 3 SVGQVAGFAGVTVRTLHHYDDIGLLVP----------S-ERSHAGHRRYSDADLDRLQQI 51 (108)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTSSCC----------S-EECSSCCEEBCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHCCCCCC----------C-ccCCCCCeecCHHHHHHHHHH
Confidence 456789999999999999975422110 0 001112235899998888633
No 251
>1mij_A Protein prospero; homeodomain, DNA-binding domain, prospero domain, 4-helix bundle, transcription; HET: MSE; 2.05A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1xpx_A
Probab=29.50 E-value=41 Score=22.41 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCC---hhhhhhhhcccC
Q psy15514 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLT---EARIQTIFIVRK 184 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~---~~~v~~WF~nrR 184 (187)
+.+|+..|..-.-.|--.+||+......--..+... -.|+--||.|-|
T Consensus 2 ~~Ltp~HLkKAKLMFfytRYPsS~~LK~yFpDvkFnr~~TsQLiKWFSNFR 52 (152)
T 1mij_A 2 STLTPMHLRKAKLMFFWVRYPSSAVLKMYFPDIKFNKNNTAQLVKWFSNFR 52 (152)
T ss_dssp CCCCHHHHHHHHHHTTTCSSCCHHHHHHHCTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHhhhhheeeecCCcHHHHHHhCCchhhhhhhHHHHHHHHHhhH
Confidence 467888888888889999999987554332222222 246678998865
No 252
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=29.21 E-value=49 Score=18.89 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcC-CChhhhhhhh
Q psy15514 138 TFSAQQLDELERAFER-----TQYPDIYTREELAQRTK-LTEARIQTIF 180 (187)
Q Consensus 138 ~~t~~q~~~Le~~f~~-----~~~p~~~~~~~la~~~~-l~~~~v~~WF 180 (187)
.+++++...|...|.. +.+.+..+...+...+| ++...|..+|
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~ 52 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMM 52 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4677778888877743 33566666666666665 5555666555
No 253
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=29.12 E-value=26 Score=18.92 Aligned_cols=21 Identities=5% Similarity=0.172 Sum_probs=17.4
Q ss_pred HHHHHHHcCCChhhhhhhhcc
Q psy15514 162 REELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~n 182 (187)
..++|..+|++...|+.+..+
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~ 36 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMN 36 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 358899999999999887654
No 254
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=28.67 E-value=39 Score=20.49 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=19.8
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|-.+++
T Consensus 46 q~elA~~lgvs~~~is~~E~G~~ 68 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGRS 68 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 46799999999999999987654
No 255
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=28.52 E-value=37 Score=19.71 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCChhhhhhhhcccC
Q psy15514 161 TREELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 161 ~~~~la~~~~l~~~~v~~WF~nrR 184 (187)
...+||..+|++...|..|-.+++
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 356899999999999999987765
No 256
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=28.20 E-value=47 Score=18.40 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCC--Chhhhhhhh
Q psy15514 139 FSAQQLDELERAFER-----TQYPDIYTREELAQRTKL--TEARIQTIF 180 (187)
Q Consensus 139 ~t~~q~~~Le~~f~~-----~~~p~~~~~~~la~~~~l--~~~~v~~WF 180 (187)
++.+++..|...|.. +.+.+..+...+...+|. +...|..+|
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 49 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELM 49 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 466777777777743 335666666666666664 444555555
No 257
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=28.17 E-value=40 Score=18.58 Aligned_cols=23 Identities=0% Similarity=-0.000 Sum_probs=19.2
Q ss_pred HHHHHHHcC--CChhhhhhhhcccC
Q psy15514 162 REELAQRTK--LTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~--l~~~~v~~WF~nrR 184 (187)
..+||..+| ++...|..|-..++
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGDR 48 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCCC
Confidence 467899999 99999999987654
No 258
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=27.84 E-value=1.3e+02 Score=19.84 Aligned_cols=50 Identities=12% Similarity=0.077 Sum_probs=32.6
Q ss_pred hhhHHHHHhhcCCchhhHhHhhccCCCCCCCCCCCCCcccccccccCCCCCHHHHHHHHHH
Q psy15514 90 YTREELAQRTKLFPHFLIIIEQQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERA 150 (187)
Q Consensus 90 ~~r~~la~~~~l~~~~v~~wfq~~~~~~~~~~~~~~~~~~~~~~r~r~~~t~~q~~~Le~~ 150 (187)
+...++|..+|++...+..|....--... .+.......|+.+++..|...
T Consensus 5 ~tI~evA~~~Gvs~~tLR~ye~~GLl~p~-----------~r~~~g~R~Y~~~dl~~l~~I 54 (146)
T 3hh0_A 5 WLISEFASVGDVTVRALRYYDKINLLKPS-----------DYTEGGHRLYTKDDLYVLQQI 54 (146)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHTTSSCCS-----------EECTTSCEEBCHHHHHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHHHHHCCCCCCC-----------eECCCCCEeeCHHHHHHHHHH
Confidence 45678999999999999999754221110 011123346899999888643
No 259
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=27.04 E-value=41 Score=24.12 Aligned_cols=41 Identities=17% Similarity=0.065 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
..+|+.+.++|.-.++-. .-.++|..+|+++..|+....+-
T Consensus 174 ~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~ 214 (236)
T 2q0o_A 174 QMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKA 214 (236)
T ss_dssp GSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHH
Confidence 468999999887654322 35688999999999999887653
No 260
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=26.84 E-value=39 Score=19.08 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=19.5
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||+.+|++...|-.++.++.
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999987764
No 261
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=26.83 E-value=35 Score=19.81 Aligned_cols=21 Identities=5% Similarity=0.048 Sum_probs=18.2
Q ss_pred HHHHHHHcCCChhhhhhhhcc
Q psy15514 162 REELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~n 182 (187)
..+||+.+|++...|..|..+
T Consensus 25 ~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 25 LSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 567999999999999999764
No 262
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=26.83 E-value=1.2e+02 Score=20.29 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.1
Q ss_pred hhhhHHHHHhhcCCchhhHhHhhc
Q psy15514 89 IYTREELAQRTKLFPHFLIIIEQQ 112 (187)
Q Consensus 89 ~~~r~~la~~~~l~~~~v~~wfq~ 112 (187)
.+...++|..+|++...+..|...
T Consensus 11 ~~~i~e~A~~~gvs~~TLR~ye~~ 34 (154)
T 2zhg_A 11 LLTPGEVAKRSGVAVSALHFYESK 34 (154)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHc
Confidence 356778999999999999999754
No 263
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=26.76 E-value=56 Score=22.26 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCC----HHHHHHHHHHcCCChhhhhhhhc
Q psy15514 136 RTTFSAQQLDELERAFERTQYPD----IYTREELAQRTKLTEARIQTIFI 181 (187)
Q Consensus 136 r~~~t~~q~~~Le~~f~~~~~p~----~~~~~~la~~~~l~~~~v~~WF~ 181 (187)
+..||.++.......-...-.|. .....++|+.+|++...+..|-.
T Consensus 21 ~r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 21 KQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp HTTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 34588888777543221111111 12467899999999999999965
No 264
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=26.51 E-value=68 Score=21.07 Aligned_cols=40 Identities=10% Similarity=0.119 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHhhh----cCCCCHHHHHHHHHHcCCChhhhhhhhc
Q psy15514 139 FSAQQLDELERAFER----TQYPDIYTREELAQRTKLTEARIQTIFI 181 (187)
Q Consensus 139 ~t~~q~~~Le~~f~~----~~~p~~~~~~~la~~~~l~~~~v~~WF~ 181 (187)
+|..++..|-..+.. +.+|+.. .||..+|++...|....+
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~ 73 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLR 73 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHH
Confidence 566666666555442 4567654 789999999998876654
No 265
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=26.43 E-value=54 Score=23.42 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=32.3
Q ss_pred cCCCCCHHHH-HHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 135 SRTTFSAQQL-DELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 135 ~r~~~t~~q~-~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
.+...+.+++ ..-...|....|-... ...||+++|++..-|-..|.|+
T Consensus 12 ~~~~~~r~~Il~aA~~l~~~~G~~~~s-~~~IA~~aGvs~~tlY~hF~~K 60 (237)
T 2hxo_A 12 RQEPLSRERIVGAAVELLDTVGERGLT-FRALAERLATGPGAIYWHITGK 60 (237)
T ss_dssp ----CCHHHHHHHHHHHHHHTTTTTCC-HHHHHHHHTSCGGGGGGTCCCH
T ss_pred CCCccCHHHHHHHHHHHHHhcCcccCC-HHHHHHHHCCChHHHHHhcCCH
Confidence 3444565543 3445667777765443 5588999999999999999886
No 266
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=26.40 E-value=46 Score=19.53 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=19.7
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 46899999999999999987664
No 267
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=26.29 E-value=1.2e+02 Score=20.01 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=32.8
Q ss_pred hhhHHHHHhhcCCchhhHhHhhccCCCCCCCCCCCCCcccccccccCCCCCHHHHHHHHHH
Q psy15514 90 YTREELAQRTKLFPHFLIIIEQQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERA 150 (187)
Q Consensus 90 ~~r~~la~~~~l~~~~v~~wfq~~~~~~~~~~~~~~~~~~~~~~r~r~~~t~~q~~~Le~~ 150 (187)
+...++|..+|++...+..|....--.. ..+.....-.|+.+++..|...
T Consensus 17 ~~I~evA~~~gvs~~tLR~Ye~~Gll~p-----------~~r~~~g~R~Y~~~dl~~l~~I 66 (148)
T 3gpv_A 17 YTIGQVAKMQHLTISQIRYYDKQGLFPF-----------LQRNEKGDRIFNEEALKYLEMI 66 (148)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHTTCCTT-----------CEECTTCCEEBCHHHHHHHHHH
T ss_pred eeHHHHHHHHCcCHHHHHHHHHCCCCCC-----------CcCCCCCCeecCHHHHHHHHHH
Confidence 4577899999999999999975322110 0111123346899999888754
No 268
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=26.19 E-value=39 Score=20.95 Aligned_cols=23 Identities=4% Similarity=0.072 Sum_probs=19.8
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|-.+++
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~~ 47 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGET 47 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999987764
No 269
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=26.15 E-value=40 Score=18.47 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=19.2
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..++|+.+|++...|-.|..+.+
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~~~ 38 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRAGR 38 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999986654
No 270
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=25.68 E-value=45 Score=20.68 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|-.+++
T Consensus 52 q~elA~~~gis~~~is~~E~G~~ 74 (107)
T 2jvl_A 52 QAELGKEIGETAATVASYERGTA 74 (107)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999987754
No 271
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=25.46 E-value=55 Score=22.17 Aligned_cols=39 Identities=15% Similarity=0.350 Sum_probs=30.8
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 144 LDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 144 ~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
+......|....|-... ..+||+..|++...+-..|.++
T Consensus 20 l~aA~~lf~~~G~~~~s-~~~Ia~~agvs~~t~Y~yF~sK 58 (203)
T 3ccy_A 20 IERAAAMFARQGYSETS-IGDIARACECSKSRLYHYFDSK 58 (203)
T ss_dssp HHHHHHHHHHTCTTTSC-HHHHHHHTTCCGGGGTTTCSCH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHhCCCcCeeeeeeCCH
Confidence 44556778888876544 5688999999999999999875
No 272
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=25.16 E-value=46 Score=20.32 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.7
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|-.+++
T Consensus 44 q~elA~~~gis~~~is~iE~G~~ 66 (99)
T 3g5g_A 44 QEDLAYKSNLDRTYISGIERNSR 66 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56899999999999999987764
No 273
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=25.09 E-value=54 Score=18.62 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCChhhhhhhhcccC
Q psy15514 161 TREELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 161 ~~~~la~~~~l~~~~v~~WF~nrR 184 (187)
...+||+.+|++...|-.++.++.
T Consensus 11 t~~diA~~aGVS~sTVSr~ln~~~ 34 (67)
T 2l8n_A 11 TMKDVALKAKVSTATVSRALMNPD 34 (67)
T ss_dssp CHHHHHHHTTCCHHHHHHTTTCCC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCCC
Confidence 357899999999999999987753
No 274
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=24.56 E-value=50 Score=20.58 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.9
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|-.+++
T Consensus 37 q~elA~~~gis~~~is~~E~G~~ 59 (114)
T 3vk0_A 37 QEELARQCGLDRTYVSAVERKRW 59 (114)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999987764
No 275
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=24.31 E-value=76 Score=22.16 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhc
Q psy15514 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFI 181 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~ 181 (187)
..+++.+..+|.-.|-.. ....++|..+|++...|+.+..
T Consensus 186 ~~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ 225 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKA 225 (239)
T ss_dssp TTSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHH
Confidence 457778888887766432 2456899999999999998764
No 276
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=24.27 E-value=50 Score=20.06 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=19.9
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|..+++
T Consensus 34 q~~lA~~~gis~~~is~~e~g~~ 56 (104)
T 3cec_A 34 TANFAEILGVSNQTIQEVINGQR 56 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCc
Confidence 56899999999999999987764
No 277
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=24.18 E-value=51 Score=20.11 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=19.0
Q ss_pred HHHHHHHcCCChhhhhhhhcc
Q psy15514 162 REELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~n 182 (187)
..+||..+|++...|..|..+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 17 LSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 568999999999999999987
No 278
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=24.12 E-value=80 Score=21.29 Aligned_cols=40 Identities=8% Similarity=0.002 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcc
Q psy15514 138 TFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 138 ~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~n 182 (187)
.+++.+..+|.-.|-.. ....++|..+|++...|+.+...
T Consensus 140 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~r 179 (194)
T 1or7_A 140 SLPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFR 179 (194)
T ss_dssp HSCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHH
Confidence 35666666665544322 13568999999999999987643
No 279
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=23.95 E-value=48 Score=22.32 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 143 QLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 143 q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
=+......|....|-... ...||++.|++...|-.+|.++
T Consensus 17 Il~aA~~lf~e~G~~~~t-~~~IA~~agvsk~tlY~~F~sK 56 (192)
T 2fq4_A 17 ILSASYELLLESGFKAVT-VDKIAERAKVSKATIYKWWPNK 56 (192)
T ss_dssp HHHHHHHHHHHHCTTTCC-HHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHcCccccc-HHHHHHHcCCCHHHHHHHCCCH
Confidence 455667778887775443 6688999999999999999875
No 280
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=23.47 E-value=50 Score=23.58 Aligned_cols=41 Identities=12% Similarity=0.046 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
..+|+.+.++|.-..+-. ...++|..+|+++..|+....+-
T Consensus 172 ~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~ 212 (234)
T 1l3l_A 172 AWLDPKEATYLRWIAVGK------TMEEIADVEGVKYNSVRVKLREA 212 (234)
T ss_dssp CCCCHHHHHHHHHHTTTC------CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHH
Confidence 468888888886643222 35688999999999999877653
No 281
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=23.20 E-value=50 Score=20.39 Aligned_cols=23 Identities=13% Similarity=0.210 Sum_probs=19.5
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|-.+++
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~ 49 (113)
T 2eby_A 27 INELAELLHVHRNSVSALINNNR 49 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56789999999999999987754
No 282
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=23.03 E-value=2e+02 Score=20.92 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=32.8
Q ss_pred hhhhHHHHHhhcCCchhhHhHhhccCCCCCCCCCCCCCcccccccccCCCCCHHHHHHHHHH
Q psy15514 89 IYTREELAQRTKLFPHFLIIIEQQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERA 150 (187)
Q Consensus 89 ~~~r~~la~~~~l~~~~v~~wfq~~~~~~~~~~~~~~~~~~~~~~r~r~~~t~~q~~~Le~~ 150 (187)
.+...++|..+|++.+.++.|....--.. .+........|+..++..|...
T Consensus 3 ~~tI~evA~~~gvs~~TLRyYe~~GLL~p-----------~~~~~~GyR~Y~~~dl~~L~~I 53 (249)
T 3qao_A 3 AMQIKELAELTGVSVRTLHHYDKIGLLVP-----------QKDDWNGYRIYSEKDVDKLQQI 53 (249)
T ss_dssp CBCHHHHHHHHCCCHHHHHHHHHTTSSCC-----------EECTTTCCEEBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHCCCCCC-----------ceECCCCCeeeCHHHHHHHHHH
Confidence 35567899999999999999976322111 0101122346899998888643
No 283
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=22.99 E-value=21 Score=22.46 Aligned_cols=45 Identities=11% Similarity=0.171 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCCChhhhhhhhc
Q psy15514 137 TTFSAQQLDELERAFER-----TQYPDIYTREELAQRTKLTEARIQTIFI 181 (187)
Q Consensus 137 ~~~t~~q~~~Le~~f~~-----~~~p~~~~~~~la~~~~l~~~~v~~WF~ 181 (187)
..++.++...+...|.. +.+.+..+...+...+|++...|..+|.
T Consensus 14 ~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~ 63 (110)
T 1iq3_A 14 WRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWE 63 (110)
T ss_dssp CCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34666777777777744 3467777777776777888888777664
No 284
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=22.95 E-value=49 Score=20.66 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=19.3
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|-.+++
T Consensus 39 q~elA~~~gis~~~is~~E~G~~ 61 (111)
T 3mlf_A 39 QKELGDLFKVSSRTIQNMEKDST 61 (111)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCCT
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45789999999999999987764
No 285
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=22.84 E-value=57 Score=21.38 Aligned_cols=39 Identities=5% Similarity=0.196 Sum_probs=30.7
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 144 LDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 144 ~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
+......|....|-... ..+||++.|++...+-..|.++
T Consensus 18 l~aa~~l~~~~G~~~~t-v~~Ia~~agvs~~t~Y~~F~sK 56 (177)
T 3kkc_A 18 YNAFISLLQENDYSKIT-VQDVIGLANVGRSTFYSHYESK 56 (177)
T ss_dssp HHHHHHHTTTSCTTTCC-HHHHHHHHCCCHHHHTTTCSST
T ss_pred HHHHHHHHHhCChhHhh-HHHHHHHhCCcHhhHHHHcCCH
Confidence 45667778887765444 5578999999999999999875
No 286
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=22.67 E-value=50 Score=20.55 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=16.0
Q ss_pred HHHHHHHcCCChhhhhhh
Q psy15514 162 REELAQRTKLTEARIQTI 179 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~W 179 (187)
...+|..+|+++.+|-.|
T Consensus 26 q~~vA~~iGV~~StISR~ 43 (97)
T 1xwr_A 26 TEKTAEAVGVDKSQISRW 43 (97)
T ss_dssp HHHHHHHHTCCTTTHHHH
T ss_pred HHHHHHHhCCCHHHHHHH
Confidence 467899999999999887
No 287
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=22.55 E-value=41 Score=22.43 Aligned_cols=36 Identities=8% Similarity=0.115 Sum_probs=27.9
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 145 DELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 145 ~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
..-...|... .......||+..|++..-|-.+|.++
T Consensus 21 ~aA~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK 56 (190)
T 2v57_A 21 DAAMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPER 56 (190)
T ss_dssp HHHHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 3344556665 55567789999999999999999875
No 288
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=22.35 E-value=58 Score=20.19 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=19.9
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|-.+++
T Consensus 30 q~eLA~~lGis~~~is~ie~G~~ 52 (104)
T 3trb_A 30 ANQLAKHLAIPTNRVTAILNGAR 52 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56889999999999999987765
No 289
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=22.35 E-value=52 Score=20.85 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=19.9
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|-.+++
T Consensus 28 q~~lA~~~gis~~~is~~E~g~~ 50 (126)
T 3ivp_A 28 REQVGAMIEIDPRYLTNIENKGQ 50 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 56899999999999999987764
No 290
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=22.34 E-value=56 Score=20.31 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.0
Q ss_pred HHHHHHHcCCChhhhhhhhcccC
Q psy15514 162 REELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~v~~WF~nrR 184 (187)
..+||..+|++...|..|-.+++
T Consensus 44 q~~lA~~~gis~~~is~~E~g~~ 66 (117)
T 3f52_A 44 LRELAEASRVSPGYLSELERGRK 66 (117)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56899999999999999987765
No 291
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=22.17 E-value=27 Score=24.60 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=28.6
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 145 DELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 145 ~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
......|....|-.. ....||++.|++..-|-..|.|+
T Consensus 51 ~aA~~lf~e~G~~~~-t~~~IA~~aGvs~~tlY~~F~sK 88 (236)
T 3q0w_A 51 ATAENLLEDRPLADI-SVDDLAKGAGISRPTFYFYFPSK 88 (236)
T ss_dssp HHHHHHHHHSCGGGC-CHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHcCcccC-CHHHHHHHhCCcHHHHHHHCCCH
Confidence 344455777766433 35688999999999999999876
No 292
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=21.90 E-value=34 Score=24.42 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=29.1
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 144 LDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 144 ~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
+......|....|-.. ....||++.|++...|-.+|.++
T Consensus 49 l~AA~~lf~~~G~~~~-t~~~IA~~aGvs~~tlY~~F~sK 87 (255)
T 3g1o_A 49 LATAENLLEDRPLADI-SVDDLAKGAGISRPTFYFYFPSK 87 (255)
T ss_dssp HHHHHHHHTTSCGGGC-CHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHcCCccC-cHHHHHHHhCCCHHHHHHHcCCH
Confidence 3444556777766433 35688999999999999999876
No 293
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=21.87 E-value=1.1e+02 Score=24.59 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=35.8
Q ss_pred cccCCCCCHHHHHHHHHHhh-----hcCCCCHHHHHHHHHHcCC--Chhhhhhhh
Q psy15514 133 RRSRTTFSAQQLDELERAFE-----RTQYPDIYTREELAQRTKL--TEARIQTIF 180 (187)
Q Consensus 133 ~r~r~~~t~~q~~~Le~~f~-----~~~~p~~~~~~~la~~~~l--~~~~v~~WF 180 (187)
...+..|+.+|+.+|..+|. .+.+.+..+...+...+|+ +..+|+.-|
T Consensus 290 ePs~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf 344 (440)
T 3u0k_A 290 EPTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI 344 (440)
T ss_dssp CCBCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HhhHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 33567899999999999985 3557888888887788775 455665554
No 294
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=21.75 E-value=62 Score=22.01 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=29.4
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 145 DELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 145 ~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
......|....|-... ...||++.|++...|-..|.|+
T Consensus 24 ~aA~~l~~~~G~~~~t-~~~IA~~agvs~~t~Y~~F~sK 61 (218)
T 3gzi_A 24 LAARNLFIERPYAQVS-IREIASLAGTDPGLIRYYFGSK 61 (218)
T ss_dssp HHHHHHHHTSCCSCCC-HHHHHHHHTSCTHHHHHHHSSH
T ss_pred HHHHHHHHHCCCCcCC-HHHHHHHhCCCHHHHHHHcCCH
Confidence 3445568887776544 5578999999999999999875
No 295
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=21.72 E-value=60 Score=19.45 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=19.2
Q ss_pred HHHHHHHcCCChhh----hhhhhcccC
Q psy15514 162 REELAQRTKLTEAR----IQTIFIVRK 184 (187)
Q Consensus 162 ~~~la~~~~l~~~~----v~~WF~nrR 184 (187)
..+||..+|++... |..|-.+++
T Consensus 17 q~~lA~~~gis~~~~~~~is~~E~g~~ 43 (98)
T 3lfp_A 17 QEKLGVLAGIDEASASARMNQYEKGKH 43 (98)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCcchhhhHHHHHHCCCC
Confidence 56899999999998 899987654
No 296
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=21.67 E-value=64 Score=20.52 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHhhhcC-CCCHHHHHHHHHHcCCChhhhhhhhc
Q psy15514 140 SAQQLDELERAFERTQ-YPDIYTREELAQRTKLTEARIQTIFI 181 (187)
Q Consensus 140 t~~q~~~Le~~f~~~~-~p~~~~~~~la~~~~l~~~~v~~WF~ 181 (187)
+.+|....++....-. -| ....+|+..+++++..+.-|+.
T Consensus 2 ~~~~~~l~~~i~~~~~~~p--~~~~~la~~~~~~~~~~~~~l~ 42 (121)
T 2pjp_A 2 SEEQQAIWQKAEPLFGDEP--WWVRDLAKETGTDEQAMRLTLR 42 (121)
T ss_dssp CHHHHHHHHHHGGGCSSSC--EEHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCC--CCHHHHHHHhCCCHHHHHHHHH
Confidence 4555554444433221 22 2344799999999999988864
No 297
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=21.51 E-value=49 Score=22.30 Aligned_cols=40 Identities=13% Similarity=0.260 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 143 QLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 143 q~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
-+......|....|-.. ...+||++.|++...+-..|.++
T Consensus 18 Il~aa~~lf~~~G~~~~-tv~~Ia~~agvs~~t~Y~~F~sK 57 (195)
T 2iu5_A 18 IAKAFKDLMQSNAYHQI-SVSDIMQTAKIRRQTFYNYFQNQ 57 (195)
T ss_dssp HHHHHHHHHHHSCGGGC-CHHHHHHHHTSCGGGGGGTCSSH
T ss_pred HHHHHHHHHHhCCCCee-CHHHHHHHhCCCHHHHHHHcCCH
Confidence 35566777888776543 35688999999999999999875
No 298
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=21.47 E-value=89 Score=19.34 Aligned_cols=43 Identities=9% Similarity=0.141 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCCChhhhhhhh
Q psy15514 138 TFSAQQLDELERAFER-----TQYPDIYTREELAQRTKLTEARIQTIF 180 (187)
Q Consensus 138 ~~t~~q~~~Le~~f~~-----~~~p~~~~~~~la~~~~l~~~~v~~WF 180 (187)
.++.++...|...|.. +.+.+..+...+....+++...|..+|
T Consensus 7 ~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~ 54 (111)
T 2kgr_A 7 AVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIW 54 (111)
T ss_dssp SSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHH
Confidence 4677888888888753 335666666666666677777777665
No 299
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=21.34 E-value=1.1e+02 Score=17.61 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcC--CChhhhhhhh
Q psy15514 141 AQQLDELERAFER-----TQYPDIYTREELAQRTK--LTEARIQTIF 180 (187)
Q Consensus 141 ~~q~~~Le~~f~~-----~~~p~~~~~~~la~~~~--l~~~~v~~WF 180 (187)
.++...|...|.. +.+.+..+...+...+| ++...|...|
T Consensus 5 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~ 51 (92)
T 2kn2_A 5 TDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMI 51 (92)
T ss_dssp CHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3445555555522 23556666666666665 4455555554
No 300
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=21.28 E-value=1.6e+02 Score=18.98 Aligned_cols=44 Identities=11% Similarity=0.182 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHcCC---Chhhhhhhhc
Q psy15514 138 TFSAQQLDELERAFER-----TQYPDIYTREELAQRTKL---TEARIQTIFI 181 (187)
Q Consensus 138 ~~t~~q~~~Le~~f~~-----~~~p~~~~~~~la~~~~l---~~~~v~~WF~ 181 (187)
.++.+++..|...|.. +.+.+..+...+...+|+ +...|...|.
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~ 69 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIK 69 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 5788899999988843 446777777777777765 5556666554
No 301
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=21.15 E-value=53 Score=22.12 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=30.0
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 144 LDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 144 ~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
+......|....|-... ...||++.|++...|-..|.++
T Consensus 22 l~aa~~l~~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~sK 60 (211)
T 3him_A 22 RAAAIEVFAAKGYGATT-TREIAASLDMSPGAVYPHYKTK 60 (211)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHTTCCTTSSTTTCSSH
T ss_pred HHHHHHHHHHcCCCcCC-HHHHHHHhCCCcChhhhcCCCH
Confidence 44455668887775443 5688999999999999999875
No 302
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=20.96 E-value=57 Score=19.20 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=16.3
Q ss_pred CCCCHHHHHHHHHHcCCChhhhhhh
Q psy15514 155 QYPDIYTREELAQRTKLTEARIQTI 179 (187)
Q Consensus 155 ~~p~~~~~~~la~~~~l~~~~v~~W 179 (187)
.|| ....+||..+||+...|+.-
T Consensus 22 g~~--psv~EIa~~lgvS~~TVrr~ 44 (77)
T 2jt1_A 22 GAP--VKTRDIADAAGLSIYQVRLY 44 (77)
T ss_dssp TSC--EEHHHHHHHHTCCHHHHHHH
T ss_pred CCC--cCHHHHHHHHCCCHHHHHHH
Confidence 354 34568899999998776643
No 303
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=20.89 E-value=71 Score=19.30 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=18.4
Q ss_pred HHHHHHHHHcCCChhhhhhhhcc
Q psy15514 160 YTREELAQRTKLTEARIQTIFIV 182 (187)
Q Consensus 160 ~~~~~la~~~~l~~~~v~~WF~n 182 (187)
....+||..+|+++..+...|+.
T Consensus 20 ~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 20 FTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHH
Confidence 34678899999999988888753
No 304
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=20.87 E-value=59 Score=22.69 Aligned_cols=37 Identities=11% Similarity=0.201 Sum_probs=28.5
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 146 ELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 146 ~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
.....|....|-... ...||++.|++...|-.+|.++
T Consensus 51 aA~~l~~~~G~~~~t-v~~IA~~AGvs~~t~Y~~F~sK 87 (229)
T 3bni_A 51 ACADLLDEVGYDALS-TRAVALRADVPIGSVYRFFGNK 87 (229)
T ss_dssp HHHHHHHHHCTTTCC-HHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHhcChhhcc-HHHHHHHHCCCchhHHHHcCCH
Confidence 344557777765443 5688999999999999999875
No 305
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=20.58 E-value=67 Score=21.92 Aligned_cols=39 Identities=8% Similarity=0.181 Sum_probs=29.8
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 144 LDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 144 ~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
+......|....|-... ...||+..|++...|-.+|.++
T Consensus 36 l~aA~~l~~~~G~~~~t-~~~IA~~aGvs~~t~Y~~F~sK 74 (222)
T 3bru_A 36 IRAGLEHLTEKGYSSVG-VDEILKAARVPKGSFYHYFRNK 74 (222)
T ss_dssp HHHHHHHHHHSCTTTCC-HHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHcCCCcCc-HHHHHHHhCCCcchhhhhCCCH
Confidence 34445668887765443 5688999999999999999875
No 306
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=20.49 E-value=59 Score=18.44 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=19.8
Q ss_pred HHHHHHHHcCCChhhhhhhhcccC
Q psy15514 161 TREELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 161 ~~~~la~~~~l~~~~v~~WF~nrR 184 (187)
....+|+.+|++..-|--|-...|
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~~r 38 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKRGL 38 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHTTC
T ss_pred CHHHHHHHhCCCHHHHHHHHHhcC
Confidence 356899999999999999986554
No 307
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=20.41 E-value=67 Score=21.48 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=29.2
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 145 DELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 145 ~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
......|....|-... ...||...|++..-|-..|.++
T Consensus 24 ~aa~~l~~~~G~~~~s-~~~Ia~~agvs~~t~Y~~F~sK 61 (206)
T 3kz9_A 24 EIALEVFARRGIGRGG-HADIAEIAQVSVATVFNYFPTR 61 (206)
T ss_dssp HHHHHHHHHSCCSSCC-HHHHHHHHTSCHHHHHHHCCSH
T ss_pred HHHHHHHHhcCccccc-HHHHHHHhCCCHHHHHHHcCCH
Confidence 3445568887765444 5578999999999999999875
No 308
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=20.37 E-value=75 Score=21.39 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=30.3
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhcccC
Q psy15514 144 LDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRK 184 (187)
Q Consensus 144 ~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nrR 184 (187)
+......|....|-... ...||++.|++...|-..|.++-
T Consensus 23 l~aa~~l~~~~G~~~~t-i~~Ia~~agvs~~t~Y~~F~sK~ 62 (207)
T 2rae_A 23 STVGIELFTEQGFDATS-VDEVAEASGIARRTLFRYFPSKN 62 (207)
T ss_dssp HHHHHHHHHHHCTTTSC-HHHHHHHTTSCHHHHHHHCSSTT
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHhCCCcchHhhhCCCHH
Confidence 34445668877775443 56889999999999999998863
No 309
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.25 E-value=51 Score=22.60 Aligned_cols=36 Identities=3% Similarity=0.017 Sum_probs=28.6
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 146 ELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 146 ~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
.....|.... .......||+..|++...|-.+|.++
T Consensus 28 aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK 63 (215)
T 2hku_A 28 AATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSK 63 (215)
T ss_dssp HHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSH
T ss_pred HHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCH
Confidence 3445577766 55567789999999999999999875
No 310
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=20.25 E-value=62 Score=21.86 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=29.9
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 144 LDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 144 ~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
+......|....|-... ...||.+.|++...|-..|.|+
T Consensus 20 l~aa~~l~~~~G~~~~t-i~~IA~~agvs~~t~Y~~F~sK 58 (212)
T 3knw_A 20 LDSGFHLVLRKGFVGVG-LQEILKTSGVPKGSFYHYFESK 58 (212)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHcCCccCC-HHHHHHHhCCChHHHHHHCCCH
Confidence 44455668777765443 5688999999999999999875
No 311
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=20.18 E-value=59 Score=22.08 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=30.4
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHcCCChhhhhhhhccc
Q psy15514 144 LDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVR 183 (187)
Q Consensus 144 ~~~Le~~f~~~~~p~~~~~~~la~~~~l~~~~v~~WF~nr 183 (187)
+..-...|....|-... ...||.+.|++..-|-.+|.|+
T Consensus 20 l~aA~~lf~~~G~~~~s-~~~IA~~agvsk~tlY~yF~sK 58 (199)
T 3crj_A 20 MQATYRALREHGYADLT-IQRIADEYGKSTAAVHYYYDTK 58 (199)
T ss_dssp HHHHHHHHHHHTTTTCC-HHHHHHHHTSCHHHHHTTCSSH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHhCCChhHHhhhcCCH
Confidence 44445668888876554 5588999999999999999875
Done!