RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15514
(187 letters)
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 68.7 bits (169), Expect = 3e-16
Identities = 25/54 (46%), Positives = 38/54 (70%)
Query: 133 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
RR RTTF+ +QL+ELE+ FE+ +YP REELA++ LTE +++ F R+ +
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVKVWFQNRRAK 54
Score = 58.3 bits (142), Expect = 4e-12
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 63 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
RR RTTF+ +QL+ELE+ FE+ +YP REELA++ L
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGL 39
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 63.8 bits (156), Expect = 2e-14
Identities = 22/55 (40%), Positives = 38/55 (69%)
Query: 132 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+RR RT+F+ +QL+ELE+ F++ YP REELA++ L+E +++ F R+ +
Sbjct: 1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAK 55
Score = 53.4 bits (129), Expect = 3e-10
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 62 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+RR RT+F+ +QL+ELE+ F++ YP REELA++ L
Sbjct: 1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGL 40
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in
the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 63.4 bits (155), Expect = 5e-14
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 133 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
RR RT F+ +QL+ELE+ FE+ YP REELA+ LTE +++ F R+ +
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAK 54
Score = 52.2 bits (126), Expect = 7e-10
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 63 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
RR RT F+ +QL+ELE+ FE+ YP REELA+ L
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGL 39
>gnl|CDD|238076 cd00131, PAX, Paired Box domain.
Length = 128
Score = 44.7 bits (106), Expect = 2e-06
Identities = 15/26 (57%), Positives = 23/26 (88%)
Query: 5 DRLIKEGLCDRGSAPSVSAISRLLRG 30
DRL++EG+CD+ + PSVS+I+R+LR
Sbjct: 101 DRLLQEGVCDKSNVPSVSSINRILRN 126
>gnl|CDD|128645 smart00351, PAX, Paired Box domain.
Length = 125
Score = 43.5 bits (103), Expect = 5e-06
Identities = 15/25 (60%), Positives = 22/25 (88%)
Query: 5 DRLIKEGLCDRGSAPSVSAISRLLR 29
DRL+ EG+CD+ + PSVS+I+R+LR
Sbjct: 101 DRLLSEGVCDKDNVPSVSSINRILR 125
>gnl|CDD|109353 pfam00292, PAX, 'Paired box' domain.
Length = 125
Score = 42.5 bits (100), Expect = 1e-05
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 5 DRLIKEGLCDRGSAPSVSAISRLLR 29
DRL+ EG+CD + PSVS+ISR+LR
Sbjct: 101 DRLLAEGVCDNDNVPSVSSISRILR 125
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 38.6 bits (90), Expect = 5e-04
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIF 180
+ R + +QL LER FE YP TR +L+ + +Q F
Sbjct: 49 SPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWF 99
Score = 35.9 bits (83), Expect = 0.004
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 10/85 (11%)
Query: 19 PSVSAISRLLRGHEGDDTSSEKKLSDGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELE 78
P + I E + SE KL + + R + +QL LE
Sbjct: 18 PQIRTIKTTKNKREVEAADSEMKLERKQDGS----------SPPKSKRRRTTDEQLMVLE 67
Query: 79 RAFERTQYPDIYTREELAQRTKLFP 103
R FE YP TR +L+ + P
Sbjct: 68 REFEINPYPSSITRIKLSLLLNMPP 92
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain. This is a homeobox
transcription factor KN domain conserved from fungi to
human and plants.
Length = 40
Score = 27.5 bits (62), Expect = 0.53
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 156 YPDIYTREELAQRTKLTEARIQTIFI-VRK 184
YP + ELA++T L+ +I FI R+
Sbjct: 10 YPSEEEKSELARQTGLSRKQIDNWFINARR 39
>gnl|CDD|221495 pfam12258, Microcephalin, Microcephalin protein. This family of
proteins is found in eukaryotes. Proteins in this family
are typically between 384 and 835 amino acids in length.
Microcephalin is involved in determining the size of the
brain in animals. It is a protein, which if expressed
homozygously causes the organism to have the condition
microcephaly. Organisms expressing the mutated form of
this protein in a homozygous manner develop a condition
called microcephaly - a drastically reduced brain mass
and volume. Microcephalin is predicted to contain three
BRCA1 C-terminal domains, the first of which is the
probable microcephaly mutation site.
Length = 391
Score = 26.8 bits (59), Expect = 7.6
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 18 APSVSAISRLLRGHEGDDTSSEKKLSDGEGSDCDSEPGIPLKRKQRRSRTTFSAQQL 74
+P++SA GH +SS K+ E S S P LKRK+ ++ QL
Sbjct: 109 SPTLSATKGHPLGHSRPKSSSAKRKRTSENS--HSSPKERLKRKRSSGKSAMPRLQL 163
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.380
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,482,937
Number of extensions: 867913
Number of successful extensions: 903
Number of sequences better than 10.0: 1
Number of HSP's gapped: 901
Number of HSP's successfully gapped: 36
Length of query: 187
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 96
Effective length of database: 6,901,388
Effective search space: 662533248
Effective search space used: 662533248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)