RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15514
(187 letters)
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription
regulation; HET: DNA; 2.00A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 3a01_B
Length = 81
Score = 107 bits (268), Expect = 5e-31
Identities = 57/65 (87%), Positives = 59/65 (90%)
Query: 116 EGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEAR 175
+ SDC+SEPGI LKRKQRRSRTTFSA QLDELERAFERTQYPDIYTREELAQRT LTEAR
Sbjct: 2 DISDCESEPGIALKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEAR 61
Query: 176 IQTIF 180
IQ F
Sbjct: 62 IQVWF 66
Score = 94.7 bits (236), Expect = 3e-26
Identities = 50/56 (89%), Positives = 52/56 (92%)
Query: 46 EGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+ SDC+SEPGI LKRKQRRSRTTFSA QLDELERAFERTQYPDIYTREELAQRT L
Sbjct: 2 DISDCESEPGIALKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNL 57
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 80
Score = 93.2 bits (232), Expect = 1e-25
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 127 PLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIF 180
+R+RT+F+ +Q++ LE+ FERT YPD++ RE LA + L EARIQ F
Sbjct: 2 SSGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWF 55
Score = 81.3 bits (201), Expect = 6e-21
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 57 PLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+R+RT+F+ +Q++ LE+ FERT YPD++ RE LA + L
Sbjct: 2 SSGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDL 46
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 92.8 bits (231), Expect = 2e-25
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 129 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIF 180
RR RT F+ +QL+ LE F+ T+YPD+ TRE+LA++ L E +++ F
Sbjct: 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWF 55
Score = 80.5 bits (199), Expect = 8e-21
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
RR RT F+ +QL+ LE F+ T+YPD+ TRE+LA++ L
Sbjct: 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHL 46
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA
binding helix- turn-helix motif, structural genomics,
NPPSFA; NMR {Mus musculus}
Length = 80
Score = 92.1 bits (229), Expect = 3e-25
Identities = 26/52 (50%), Positives = 34/52 (65%)
Query: 129 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIF 180
RR RTTF+ QLD LE F +T+YPDI+ REE+A + L E+R+Q F
Sbjct: 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWF 55
Score = 80.2 bits (198), Expect = 1e-20
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
RR RTTF+ QLD LE F +T+YPDI+ REE+A + L
Sbjct: 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINL 46
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA
complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P
2lkx_A* 2l7m_P
Length = 68
Score = 90.8 bits (226), Expect = 8e-25
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 131 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIF 180
QRR RT F++QQL +LE F+R +YPD+ TREE+A T LTEAR++ F
Sbjct: 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWF 51
Score = 78.5 bits (194), Expect = 5e-20
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 61 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
QRR RT F++QQL +LE F+R +YPD+ TREE+A T L
Sbjct: 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNL 42
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 89.1 bits (221), Expect = 5e-24
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 129 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIF 180
+R RT+F QL ++ F PD ++LAQ+T LT+ +Q F
Sbjct: 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWF 55
Score = 77.9 bits (192), Expect = 1e-19
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+R RT+F QL ++ F PD ++LAQ+T L
Sbjct: 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGL 46
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant,
DNA binding protein, developmental protein, disease
mutation, DNA-binding; NMR {Homo sapiens}
Length = 67
Score = 85.8 bits (213), Expect = 7e-23
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 133 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIF 180
RR RT F+ Q++ LE F YP I E+LAQ+ L RIQ F
Sbjct: 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWF 49
Score = 73.5 bits (181), Expect = 5e-18
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 63 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
RR RT F+ Q++ LE F YP I E+LAQ+ L
Sbjct: 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNL 40
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein,
DNA-binding, N gene regulation; 1.00A {Drosophila
melanogaster} PDB: 3lnq_A 3cmy_A
Length = 60
Score = 85.0 bits (211), Expect = 1e-22
Identities = 29/46 (63%), Positives = 36/46 (78%)
Query: 135 SRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIF 180
S TF++ QL+ELE+AF RT YPD++TREELA + LTEARIQ F
Sbjct: 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWF 47
Score = 71.9 bits (177), Expect = 1e-17
Identities = 22/37 (59%), Positives = 29/37 (78%)
Query: 65 SRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
S TF++ QL+ELE+AF RT YPD++TREELA + L
Sbjct: 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGL 38
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 84.7 bits (210), Expect = 2e-22
Identities = 16/52 (30%), Positives = 21/52 (40%)
Query: 129 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIF 180
R SRT F+ QL L+ F+ YP E+L+ L I F
Sbjct: 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWF 55
Score = 73.2 bits (180), Expect = 6e-18
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
R SRT F+ QL L+ F+ YP E+L+ L
Sbjct: 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNL 46
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein,
homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP:
a.4.1.1
Length = 66
Score = 82.4 bits (204), Expect = 1e-21
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 131 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIF 180
K R RT + +QL L + PD +E+L + T L+ I+ F
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWF 51
Score = 71.6 bits (176), Expect = 2e-17
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 61 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
K R RT + +QL L + PD +E+L + T L
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGL 42
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 80
Score = 78.3 bits (193), Expect = 9e-20
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 118 SDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQ 177
S G ++ +R RTT + +QL+ L + + P + +A L + +Q
Sbjct: 3 SGSSGGTGGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQ 62
Query: 178 TIF 180
F
Sbjct: 63 VWF 65
Score = 68.7 bits (168), Expect = 5e-16
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 48 SDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
S G ++ +R RTT + +QL+ L + + P + +A L
Sbjct: 3 SGSSGGTGGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGL 56
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 79.1 bits (194), Expect = 8e-19
Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 17/112 (15%)
Query: 5 DRLIKEGLCDRGSAPSVSAISRLLRGHEGDDTSSEKKL-----------------SDGEG 47
I + + + S +S+ L T L + G
Sbjct: 41 QHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQREVAQQFTHAGQGG 100
Query: 48 SDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRT 99
+ +K RR+R + L +A+ER + P RE L +
Sbjct: 101 LIEEPTGDELPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEEC 152
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac
development, riken structural genomics/proteomics
initiative, RSGI, transcription; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 72
Score = 73.6 bits (181), Expect = 4e-18
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 133 RRSRTTFSAQQLDELERAFERT-QYPDIYTREELAQRTKLTEARIQTIF 180
T + Q++ LE F + ++PD T +A LTE + Q F
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWF 50
Score = 61.6 bits (150), Expect = 1e-13
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 63 RRSRTTFSAQQLDELERAFERT-QYPDIYTREELAQRTKL 101
T + Q++ LE F + ++PD T +A L
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGL 41
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 69.7 bits (171), Expect = 1e-16
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 129 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQ 177
+R RT + QL L + F+ P +E+A ++ L + I+
Sbjct: 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIK 52
Score = 61.6 bits (150), Expect = 2e-13
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+R RT + QL L + F+ P +E+A ++ L
Sbjct: 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGL 46
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 73.1 bits (178), Expect = 2e-16
Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 27/168 (16%)
Query: 8 IKEGLCDRGSAPSVSAISRLLRGHEGDDTSSEKKLSDGEGSDCDSEPGIPLKRKQRRSRT 67
I + + + S +S+ L G P+K ++R +
Sbjct: 45 IPQREVVDVTGLNQSHLSQHLNK------------------------GTPMKTQKRAALY 80
Query: 68 TFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGEGSDCDSEPGIP 127
T+ ++ E+ R F +T + + ++ FL Q S D P
Sbjct: 81 TWYVRKQREILRQFNQTVQS---SGNMTDKSSQDQLLFLFPEFSQQSHGPGQSDDACSEP 137
Query: 128 LKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEAR 175
+K RR+R + L +A++R + P RE L + E
Sbjct: 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECL 185
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor,
structural genomics, loop insertion, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 95
Score = 69.7 bits (170), Expect = 3e-16
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 15/73 (20%)
Query: 129 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELA---------------QRTKLTE 173
R SR T+ + L +E F QYPD REE+A ++T
Sbjct: 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTS 63
Query: 174 ARIQTIFIVRKMR 186
++ F R+
Sbjct: 64 LKVYNWFANRRKE 76
Score = 66.2 bits (161), Expect = 5e-15
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRT 99
R SR T+ + L +E F QYPD REE+A
Sbjct: 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANAC 44
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 73
Score = 68.6 bits (168), Expect = 3e-16
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 133 RRSRTTFSAQQLDELERAFERT-QYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
++ + + Q++ LE F + ++PD T +A LTE + Q F R
Sbjct: 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAE 57
Score = 57.1 bits (138), Expect = 8e-12
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 63 RRSRTTFSAQQLDELERAFERT-QYPDIYTREELAQRTKL 101
++ + + Q++ LE F + ++PD T +A L
Sbjct: 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGL 42
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 65.9 bits (161), Expect = 5e-15
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 129 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIF 180
+ S +QL L+ +F R Q+P E L + T L+ ++ F
Sbjct: 5 SSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWF 56
Score = 55.9 bits (135), Expect = 3e-11
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+ S +QL L+ +F R Q+P E L + T L
Sbjct: 5 SSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGL 47
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 64.0 bits (156), Expect = 2e-14
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 131 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+ +Q+ L+ +F ++Q+PD L + T L + I+ F + R
Sbjct: 3 HHHHHHRKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYR 58
Score = 56.3 bits (136), Expect = 2e-11
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 61 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+ +Q+ L+ +F ++Q+PD L + T L
Sbjct: 3 HHHHHHRKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGL 43
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 62.7 bits (152), Expect = 5e-13
Identities = 15/68 (22%), Positives = 28/68 (41%)
Query: 110 EQQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRT 169
+ + EG E K+R+ RT+F+ Q ++ L FE+ P E+A+
Sbjct: 71 AELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKEL 130
Query: 170 KLTEARIQ 177
++
Sbjct: 131 NYDREVVR 138
Score = 56.6 bits (136), Expect = 8e-11
Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 21/118 (17%)
Query: 5 DRLIKEGL--CDRGSAPSVSAISRLLRGHEG-------------------DDTSSEKKLS 43
R + GL G A + + + + +E +L
Sbjct: 15 IRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDITPKSAQKLKPVLEKWLNEAELR 74
Query: 44 DGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+ EG E K+R+ RT+F+ Q ++ L FE+ P E+A+
Sbjct: 75 NQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNY 132
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 60.0 bits (145), Expect = 4e-12
Identities = 15/70 (21%), Positives = 24/70 (34%)
Query: 111 QQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTK 170
E + ++R+ RTT S D LER F P +A+
Sbjct: 66 WLEEAEQVGALYNEKVGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELN 125
Query: 171 LTEARIQTIF 180
L + ++ F
Sbjct: 126 LEKEVVRVWF 135
Score = 58.5 bits (141), Expect = 2e-11
Identities = 24/117 (20%), Positives = 35/117 (29%), Gaps = 24/117 (20%)
Query: 5 DRLIKEGLCDRGSAPSVSAISRLLRGHEGDDTS--------------------SEKKLSD 44
R IK G + +V + G E T+ K L +
Sbjct: 14 VRRIKLGY----TQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEE 69
Query: 45 GEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
E + ++R+ RTT S D LER F P +A+ L
Sbjct: 70 AEQVGALYNEKVGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNL 126
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A
{Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 58.3 bits (140), Expect = 8e-12
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 129 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEA 174
+K RR+R + L +A+ER + P RE L + E
Sbjct: 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAEC 51
Score = 57.5 bits (138), Expect = 1e-11
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRT 99
+K RR+R + L +A+ER + P RE L +
Sbjct: 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEEC 46
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 58.1 bits (140), Expect = 3e-11
Identities = 12/70 (17%), Positives = 27/70 (38%)
Query: 111 QQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTK 170
+++ + I + ++R+ RT+ LE F + P + LA +
Sbjct: 78 EETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQ 137
Query: 171 LTEARIQTIF 180
L + ++ F
Sbjct: 138 LEKEVVRVWF 147
Score = 52.3 bits (125), Expect = 4e-09
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 39 EKKLSDGEGS--DCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELA 96
K L + + S + I + ++R+ RT+ LE F + P + LA
Sbjct: 74 NKWLEETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLA 133
Query: 97 QRTKL 101
+L
Sbjct: 134 DSLQL 138
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 57.8 bits (139), Expect = 4e-11
Identities = 13/77 (16%), Positives = 33/77 (42%)
Query: 111 QQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTK 170
+++ + + L + ++R RT+ + LE F ++ P + +A +
Sbjct: 75 EEADNNENLQEISKSETLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLG 134
Query: 171 LTEARIQTIFIVRKMRG 187
L + ++ F R+ +G
Sbjct: 135 LEKDVVRVWFSNRRQKG 151
Score = 55.1 bits (132), Expect = 3e-10
Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 18/115 (15%)
Query: 5 DRLIKEGLCD----------RGSAPSVSAISRLLRGHEGD------DTSSEKKLSDGE-- 46
+ I G G S + ISR EK + + +
Sbjct: 21 QKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEADNN 80
Query: 47 GSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+ + L + ++R RT+ + LE F ++ P + +A + L
Sbjct: 81 ENLQEISKSETLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGL 135
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 56.9 bits (137), Expect = 7e-11
Identities = 15/69 (21%), Positives = 30/69 (43%)
Query: 118 SDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQ 177
+ PGI ++R+ RT+ LE++F Q P +A++ + + I+
Sbjct: 87 PSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 146
Query: 178 TIFIVRKMR 186
F R+ +
Sbjct: 147 VWFSNRRQK 155
Score = 53.4 bits (128), Expect = 2e-09
Identities = 18/85 (21%), Positives = 34/85 (40%)
Query: 17 SAPSVSAISRLLRGHEGDDTSSEKKLSDGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDE 76
S ++S + LL D ++ S + PGI ++R+ RT+
Sbjct: 56 SFKNMSKLKPLLEKWLNDAEANLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVA 115
Query: 77 LERAFERTQYPDIYTREELAQRTKL 101
LE++F Q P +A++ +
Sbjct: 116 LEKSFMENQKPTSEDITLIAEQLNM 140
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics,
protein structure initiative, PSI, center for eukaryotic
structural genomics; NMR {Homo sapiens}
Length = 84
Score = 54.4 bits (131), Expect = 1e-10
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 110 EQQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRT 169
+Q +S E S E +P K++++RT FS+ QL L F+R +Y + +EL+
Sbjct: 2 KQPTSAENSVAKKEDKVP--VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNIL 59
Query: 170 KLTEARIQTIFIVRKM 185
L+ +++T F ++M
Sbjct: 60 NLSYKQVKTWFQNQRM 75
Score = 47.5 bits (113), Expect = 6e-08
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 43 SDGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+ ++ + K++++RT FS+ QL L F+R +Y + +EL+ L
Sbjct: 3 QPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNL 61
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 54.6 bits (131), Expect = 1e-10
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 115 GEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEA 174
G + P ++ + ++ Q+ LE +F ++ +P + L TKL+
Sbjct: 1 GSSGSSGAYPDFAPQKFKEKT-----QGQVKILEDSFLKSSFPTQAELDRLRVETKLSRR 55
Query: 175 RIQTIFIVRKMR 186
I + F R+
Sbjct: 56 EIDSWFSERRKL 67
Score = 45.4 bits (107), Expect = 3e-07
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 45 GEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
G + P ++ + ++ Q+ LE +F ++ +P + L TKL
Sbjct: 1 GSSGSSGAYPDFAPQKFKEKT-----QGQVKILEDSFLKSSFPTQAELDRLRVETKL 52
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB:
1f43_A 1yrn_A*
Length = 61
Score = 53.0 bits (128), Expect = 3e-10
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 129 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
K K + +++ S Q LE F R Q + +EE+A++ +T +++ FI ++MR
Sbjct: 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59
Score = 45.3 bits (108), Expect = 2e-07
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 59 KRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPH 104
K K + +++ S Q LE F R Q + +EE+A++ + P
Sbjct: 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPL 47
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus,
transcription-DNA CO; 1.70A {Homo sapiens}
Length = 58
Score = 52.6 bits (127), Expect = 4e-10
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 132 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKM 185
+R+ R FS Q+ ELER F++ +Y R++LA KLT +++ F R+
Sbjct: 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRY 55
Score = 46.5 bits (111), Expect = 6e-08
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 62 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+R+ R FS Q+ ELER F++ +Y R++LA KL
Sbjct: 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKL 41
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 52.9 bits (127), Expect = 4e-10
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 115 GEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEA 174
G EPG +K RRSRT F+ QL LE+ FE+ +Y R +LA+ L++
Sbjct: 1 GSSGSSGGEPG-TKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQL 59
Query: 175 RIQTIFIVRKMR 186
+++T + R+M+
Sbjct: 60 QVKTWYQNRRMK 71
Score = 44.8 bits (106), Expect = 5e-07
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 45 GEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
G EPG +K RRSRT F+ QL LE+ FE+ +Y R +LA+ L
Sbjct: 1 GSSGSSGGEPG-TKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGL 56
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA
complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Length = 58
Score = 51.9 bits (125), Expect = 6e-10
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 133 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKM 185
R+ RT F+ QL LER F + QY I R E + LTE +++ F R+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRA 53
Score = 45.7 bits (109), Expect = 1e-07
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 63 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
R+ RT F+ QL LER F + QY I R E + L
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSL 39
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription,
transcription facto developmental protein, transcription
regulation, NUC homeobox; 2.6A {Mus musculus}
Length = 62
Score = 51.1 bits (123), Expect = 1e-09
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 131 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKM 185
+++ RT FS QL L+ F++ +Y + +EL+ L+ +++T F ++M
Sbjct: 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRM 56
Score = 44.6 bits (106), Expect = 3e-07
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 61 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+++ RT FS QL L+ F++ +Y + +EL+ L
Sbjct: 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNL 42
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic
development, complex (homeodomain/DNA); HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P*
1vnd_A 1qry_A
Length = 77
Score = 51.7 bits (124), Expect = 1e-09
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 122 SEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFI 181
+ G+P K+R+ R F+ Q ELER F + +Y RE LA +LT +++ F
Sbjct: 1 ASDGLP--NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQ 58
Query: 182 VRKM 185
+
Sbjct: 59 NHRY 62
Score = 45.5 bits (108), Expect = 2e-07
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 52 SEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+ G+P K+R+ R F+ Q ELER F + +Y RE LA +L
Sbjct: 1 ASDGLP--NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRL 48
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 50.9 bits (122), Expect = 2e-09
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
R+ RT +S+ QL L+R F++TQY + R ELA LT+ +++ F ++ +
Sbjct: 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSK 61
Score = 44.3 bits (105), Expect = 5e-07
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
R+ RT +S+ QL L+R F++TQY + R ELA L
Sbjct: 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGL 46
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative; NMR {Homo sapiens}
Length = 69
Score = 50.8 bits (122), Expect = 2e-09
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 131 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+ S Q+ ELER F +Y R LA+ KLTE +++ F R+ +
Sbjct: 3 HHHHHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYK 58
Score = 43.9 bits (104), Expect = 8e-07
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 61 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+ S Q+ ELER F +Y R LA+ KL
Sbjct: 3 HHHHHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKL 43
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding
protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Length = 68
Score = 50.4 bits (121), Expect = 3e-09
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 132 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKM 185
+R+ R FS Q+ ELER F++ +Y RE LA LT +++ F +
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRY 55
Score = 44.3 bits (105), Expect = 5e-07
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 62 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+R+ R FS Q+ ELER F++ +Y RE LA L
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHL 41
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 50.6 bits (121), Expect = 3e-09
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 131 KQRRSRTTFSAQQLDELERAFERTQ-YPDIYTREELAQRTKLTEARIQTIF 180
RSRT S + L L+ YPD L+ + L + I F
Sbjct: 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFF 56
Score = 43.6 bits (103), Expect = 1e-06
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 61 KQRRSRTTFSAQQLDELERAFERTQ-YPDIYTREELAQRTKL 101
RSRT S + L L+ YPD L+ + L
Sbjct: 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDL 47
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 50.6 bits (120), Expect = 5e-09
Identities = 16/71 (22%), Positives = 25/71 (35%)
Query: 110 EQQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRT 169
G K + +QL L+ AF RTQ+P ++LA+ +
Sbjct: 3 HHHHHHSSGLEVLFQGPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKES 62
Query: 170 KLTEARIQTIF 180
L I + F
Sbjct: 63 GLARTDIVSWF 73
Score = 44.4 bits (104), Expect = 8e-07
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 52 SEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
G K + +QL L+ AF RTQ+P ++LA+ + L
Sbjct: 15 LFQGPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGL 64
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 50.2 bits (120), Expect = 5e-09
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
K+++ RT+F+ Q+ ELE+ F + +Y R LA+ K+T+A+++T F R+ +
Sbjct: 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTK 71
Score = 42.5 bits (100), Expect = 4e-06
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
K+++ RT+F+ Q+ ELE+ F + +Y R LA+ K+
Sbjct: 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKM 56
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 49.6 bits (118), Expect = 1e-08
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 117 GSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARI 176
GS S P ++ + ++ A+QL L+ +F + L +TKLT I
Sbjct: 1 GSSGSSGPDFTPQKFKEKT-----AEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREI 55
Query: 177 QTIFIVRKMR 186
F +K
Sbjct: 56 DAWFTEKKKS 65
Score = 41.1 bits (96), Expect = 1e-05
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 47 GSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
GS S P ++ + ++ A+QL L+ +F + L +TKL
Sbjct: 1 GSSGSSGPDFTPQKFKEKT-----AEQLRVLQASFLNSSVLTDEELNRLRAQTKL 50
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 47.0 bits (112), Expect = 6e-08
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+ + FS Q ELE+ FE +Y R+ LA+ +L+E +++T F R+ +
Sbjct: 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAK 61
Score = 38.6 bits (90), Expect = 7e-05
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+ + FS Q ELE+ FE +Y R+ LA+ +L
Sbjct: 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQL 46
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 47.9 bits (113), Expect = 2e-07
Identities = 12/68 (17%), Positives = 26/68 (38%)
Query: 119 DCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQT 178
+ E G ++ R F+ Q L F+ + P + ++Q+ L + +
Sbjct: 84 RKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSN 143
Query: 179 IFIVRKMR 186
F+ + R
Sbjct: 144 FFMNARRR 151
Score = 41.4 bits (96), Expect = 3e-05
Identities = 11/63 (17%), Positives = 21/63 (33%)
Query: 39 EKKLSDGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQR 98
L + E G ++ R F+ Q L F+ + P + ++Q+
Sbjct: 74 MSALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQ 133
Query: 99 TKL 101
L
Sbjct: 134 LGL 136
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 45.7 bits (108), Expect = 2e-07
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+ +QL LE +F + P + L TK+T I + F R+ +
Sbjct: 7 GPTKYKERA--PEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKK 61
Score = 37.6 bits (87), Expect = 2e-04
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+ +QL LE +F + P + L TK+
Sbjct: 7 GPTKYKERA--PEQLRALESSFAQNPLPLDEELDRLRSETKM 46
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
protein, DNA-binding, N gene regulation; 1.54A {Homo
sapiens}
Length = 56
Score = 45.0 bits (107), Expect = 2e-07
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 137 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKM 185
T+FS Q+ ELER F R +Y R LA+ ++T+A+++T F R+
Sbjct: 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRT 50
Score = 37.7 bits (88), Expect = 1e-04
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 67 TTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
T+FS Q+ ELER F R +Y R LA+ ++
Sbjct: 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRM 36
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 43.1 bits (102), Expect = 1e-06
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 132 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
++R RT FS++QL L+R F +Y R++L+ L EA+I+ F ++ +
Sbjct: 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAK 57
Score = 35.8 bits (83), Expect = 6e-04
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 62 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
++R RT FS++QL L+R F +Y R++L+ L
Sbjct: 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGL 42
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix,
helix-turn-helix; NMR {Drosophila melanogaster} SCOP:
a.4.1.1
Length = 68
Score = 43.2 bits (102), Expect = 1e-06
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 132 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
RR+RTTF++ Q+ ELE+ F + +Y +L+ + L A+++ F R+ R
Sbjct: 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRR 56
Score = 34.7 bits (80), Expect = 0.002
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 62 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
RR+RTTF++ Q+ ELE+ F + +Y +L+ + L
Sbjct: 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLAL 41
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA
complex, transcription/DNA complex; 2.00A {Drosophila
melanogaster} SCOP: a.4.1.1
Length = 60
Score = 42.0 bits (99), Expect = 3e-06
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 133 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
RR RT F+ QL LE+ F + Y R ELA + L E+ I+ F R+M+
Sbjct: 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMK 55
Score = 33.9 bits (78), Expect = 0.003
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 63 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
RR RT F+ QL LE+ F + Y R ELA + L
Sbjct: 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNL 40
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 76
Score = 42.3 bits (99), Expect = 3e-06
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 134 RSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIF 180
S + +QL L+ F + Q+ ++L Q T L I F
Sbjct: 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWF 51
Score = 38.1 bits (88), Expect = 1e-04
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 64 RSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
S + +QL L+ F + Q+ ++L Q T L
Sbjct: 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGL 42
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex,
DNA-binding protein, protein/DNA complex; HET: DNA;
2.35A {Homo sapiens} SCOP: a.4.1.1
Length = 97
Score = 42.6 bits (100), Expect = 5e-06
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 122 SEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFI 181
++ P RT F+ +QL ELE+ F +Y R E+A +L E +++ F
Sbjct: 24 AKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQ 83
Query: 182 VRKMR 186
R+M+
Sbjct: 84 NRRMK 88
Score = 34.1 bits (78), Expect = 0.005
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 52 SEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
++ P RT F+ +QL ELE+ F +Y R E+A +L
Sbjct: 24 AKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLEL 73
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA
complex, transcription/DNA complex; 2.42A {Mesocricetus
auratus}
Length = 63
Score = 40.4 bits (95), Expect = 1e-05
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 131 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+R+RT ++ QL ELE+ F +Y R ELA LTE I+ F R+M+
Sbjct: 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMK 57
Score = 32.0 bits (73), Expect = 0.014
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 61 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+R+RT ++ QL ELE+ F +Y R ELA L
Sbjct: 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNL 42
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX,
paired domain, DNA-binding protein, gene regulation/DNA
complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP:
a.4.1.5
Length = 128
Score = 42.0 bits (98), Expect = 1e-05
Identities = 19/28 (67%), Positives = 26/28 (92%)
Query: 5 DRLIKEGLCDRGSAPSVSAISRLLRGHE 32
++LI+EG+CDR +APSVSAISRL+RG +
Sbjct: 101 EKLIREGVCDRSTAPSVSAISRLVRGRD 128
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple
frequency, 3D NMR, induced FIT, alternative splicing,
developmental protein; NMR {Homo sapiens}
Length = 159
Score = 41.4 bits (96), Expect = 4e-05
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 5 DRLIKEGLCDRGSAPSVSAISRLLRG--HEGDDTSSEKKLSDGEGS 48
DRL+ EG+CD + PSVS+I+R++R + + + G
Sbjct: 109 DRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSGAPGGGSH 154
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 39.4 bits (92), Expect = 4e-05
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+RR R T++ Q ELE+ F Y R E+A LTE +I+ F R+M+
Sbjct: 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMK 74
Score = 31.3 bits (71), Expect = 0.041
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+RR R T++ Q ELE+ F Y R E+A L
Sbjct: 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSL 59
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A
{Drosophila melanogaster} PDB: 2r5z_A*
Length = 88
Score = 39.1 bits (91), Expect = 6e-05
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 131 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+ +R RT+++ Q ELE+ F +Y R E+A LTE +I+ F R+M+
Sbjct: 27 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMK 82
Score = 30.6 bits (69), Expect = 0.079
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 61 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+ +R RT+++ Q ELE+ F +Y R E+A L
Sbjct: 27 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSL 67
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 6e-05
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 16/126 (12%)
Query: 74 LDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSS------GEGSDCDSE---P 124
D + + + I ++ T F ++ +Q E + +
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRL--FWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 125 GIPLKRKQRRSRTTFSAQQLDELERAFER-TQYPDIYTREELAQ--RTKLTEARIQTIFI 181
I +++Q T +Q D L + +Y +R + R L E R +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN--VSRLQPYLKLRQALLELRPAKNVL 154
Query: 182 VRKMRG 187
+ + G
Sbjct: 155 IDGVLG 160
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A
1hom_A 1ftz_A
Length = 68
Score = 38.6 bits (90), Expect = 7e-05
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 132 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
++R R T++ Q ELE+ F +Y R E+A LTE +I+ F R+M+
Sbjct: 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMK 56
Score = 30.1 bits (68), Expect = 0.084
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 62 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
++R R T++ Q ELE+ F +Y R E+A L
Sbjct: 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSL 41
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB:
2ld5_A*
Length = 73
Score = 38.3 bits (89), Expect = 8e-05
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+ R+ R ++ QL ELER + ++ R ++ T L+E ++ F R+++
Sbjct: 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVK 61
Score = 31.0 bits (70), Expect = 0.042
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+ R+ R ++ QL ELER + ++ R ++ T L
Sbjct: 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNL 46
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 70
Score = 37.9 bits (88), Expect = 1e-04
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
R+ R +S QL ELER + ++ R +++ T L+E +I F R+++
Sbjct: 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVK 61
Score = 29.8 bits (67), Expect = 0.11
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
R+ R +S QL ELER + ++ R +++ T L
Sbjct: 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSL 46
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription
factor, transcription/DNA complex; 2.25A {Homo sapiens}
SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Length = 149
Score = 39.0 bits (90), Expect = 2e-04
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 5 DRLIKEGLCDRGSAPSVSAISRLLRGHEG 33
DRL+ E +CD + PSVS+I+R++R
Sbjct: 116 DRLLAERVCDNDTVPSVSSINRIIRTKVQ 144
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex,
HOX hexapeptide, TALE homeodomain, homeodomain
interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB:
1san_A
Length = 77
Score = 36.4 bits (84), Expect = 5e-04
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
R R+ R ++ Q ELE+ F Y R E+A+ LTE +++ F R+M+
Sbjct: 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMK 67
Score = 27.9 bits (62), Expect = 0.58
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
R R+ R ++ Q ELE+ F Y R E+A+ L
Sbjct: 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNL 52
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices
with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 102
Score = 34.1 bits (77), Expect = 0.005
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQ 97
R+R + L +A++R + P RE L +
Sbjct: 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVE 41
Score = 34.1 bits (77), Expect = 0.005
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQ 167
R+R + L +A++R + P RE L +
Sbjct: 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVE 41
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 32.1 bits (73), Expect = 0.016
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 134 RSRTTFSAQQLDELERAFER-TQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+ + D LE+ F T+YPD + L+++ + +IQ F R+ +
Sbjct: 10 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQ 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription
regulation, transcriptional repression, DNA- binding
protein; HET: DNA; 2.25A {Saccharomyces cerevisiae}
SCOP: a.4.1.1
Length = 87
Score = 28.3 bits (63), Expect = 0.52
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 110 EQQSSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQ---YPDIYTREELA 166
+ + + + R R F+ + + LE F + Y D E L
Sbjct: 7 KSADGLVFNVVTQDMINKSTKPYRGHR--FTKENVRILESWFAKNIENPYLDTKGLENLM 64
Query: 167 QRTKLTEARIQTIFIVRKMRG 187
+ T L+ +I+ R+ +
Sbjct: 65 KNTSLSRIQIKNWVSNRRRKE 85
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 28.0 bits (61), Expect = 0.55
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 125 GIPLKRKQRRSRTTFSAQQLDELERAFER----TQYPDIYTREELAQRTKLTEARIQTIF 180
G + RT FS + L L++ ++ E +A + ++T
Sbjct: 1 GSSGSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWI 60
Query: 181 IVRKMR 186
R+ +
Sbjct: 61 GNRRRK 66
Score = 26.5 bits (57), Expect = 2.0
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 55 GIPLKRKQRRSRTTFSAQQLDELERAFER----TQYPDIYTREELAQRTKL 101
G + RT FS + L L++ ++ E +A +
Sbjct: 1 GSSGSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNV 51
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 64
Score = 27.5 bits (61), Expect = 0.67
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 141 AQQLDELERAF-ERTQYPDIYTREELAQRTKLTEARIQTIFIVRK 184
AQ LE+ F T++PD E L+++ IQ F R+
Sbjct: 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRR 53
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.80
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 7/24 (29%)
Query: 40 KKLSDGEGS----DCDSEPGIPLK 59
KKL + S DS P + +K
Sbjct: 23 KKL---QASLKLYADDSAPALAIK 43
Score = 28.0 bits (61), Expect = 1.2
Identities = 9/59 (15%), Positives = 14/59 (23%), Gaps = 36/59 (61%)
Query: 72 QQLDELERAFERTQYPDIYTREELAQRTKLF-PHFLIIIEQQSSGEGSDCDSEPGIPLK 129
Q L +L+ KL+ DS P + +K
Sbjct: 20 QALKKLQ------------------ASLKLYAD-----------------DSAPALAIK 43
Score = 27.6 bits (60), Expect = 1.9
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 10/37 (27%)
Query: 142 QQLDELERAFERTQY-PDIYTREELAQRTKLTEARIQ 177
Q L +L+ + + Y D + LA +A ++
Sbjct: 20 QALKKLQASLKL--YADD--SAPALA-----IKATME 47
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Length = 1180
Score = 27.6 bits (61), Expect = 2.9
Identities = 23/170 (13%), Positives = 50/170 (29%), Gaps = 10/170 (5%)
Query: 1 MCWGDRLIKEGLCDRGSAPSVSAISRLLRGHEGDDTSSEKKLSDGEGSDCDSEPGIPLKR 60
+ + + G + SA+ RLL+ E D + + + D +
Sbjct: 815 LGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGD 874
Query: 61 KQRRSRTTFSAQQLDELERAFERTQYPD--IYTREELAQRTKLFPHFLIIIEQQSSGEGS 118
Q S +L+ + +R + + + L QR L+ + +
Sbjct: 875 NQPWQVNDVSTAELN--AKTLQRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVA 932
Query: 119 DCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQR 168
EP + + R + L FE + + ++
Sbjct: 933 SVVEEPTLTPHQFPRGASPG------TFLHSLFEDLDFTQPVDPNWVREK 976
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
a.4.1.1
Length = 80
Score = 26.1 bits (57), Expect = 3.1
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 45 GEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFER 83
G S P +R RT F+A+Q +++ ER
Sbjct: 1 GSSGSSGSNPSSSGGTT-KRFRTKFTAEQKEKMLAFAER 38
Score = 26.1 bits (57), Expect = 3.1
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 115 GEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFER 153
G S P +R RT F+A+Q +++ ER
Sbjct: 1 GSSGSSGSNPSSSGGTT-KRFRTKFTAEQKEKMLAFAER 38
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration
calorimetry, protein-DNA complex, transcription/DNA
complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1akh_B* 1apl_C* 1yrn_B*
Length = 83
Score = 25.9 bits (57), Expect = 3.1
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 130 RKQRRSRTTFSAQQLDELERAFERTQ---YPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+ R R F+ + + LE F + Y D E L + T L+ +I+ R+ +
Sbjct: 2 KPYRGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAK 59
Query: 187 G 187
Sbjct: 60 E 60
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 27.2 bits (61), Expect = 3.3
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 65 SRTTFSAQQLDELERAFERTQYP 87
S T + +QL+EL ++
Sbjct: 277 SGGTLTCEQLNELALGLADSEQR 299
Score = 27.2 bits (61), Expect = 3.3
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 135 SRTTFSAQQLDELERAFERTQYP 157
S T + +QL+EL ++
Sbjct: 277 SGGTLTCEQLNELALGLADSEQR 299
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain,
hoogsteen base PAIR, transcription/DNA complex; HET:
5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Length = 60
Score = 24.6 bits (54), Expect = 5.4
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 156 YPDIYTREELAQRTKLTEARIQTIFIVRKMRG 187
Y D E L + T L+ +I+ R+ +
Sbjct: 25 YLDTKGLENLMKNTSLSRIQIKNWVSNRRRKE 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.380
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,745,658
Number of extensions: 151369
Number of successful extensions: 529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 505
Number of HSP's successfully gapped: 146
Length of query: 187
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 99
Effective length of database: 4,244,745
Effective search space: 420229755
Effective search space used: 420229755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.5 bits)