RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15514
(187 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 63.3 bits (154), Expect = 2e-14
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 130 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
R R+ R ++ Q ELE+ F Y R E+A+ LTE +++ F R+M+
Sbjct: 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMK 67
Score = 52.1 bits (125), Expect = 3e-10
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 60 RKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
R R+ R ++ Q ELE+ F Y R E+A+ L
Sbjct: 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNL 52
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 60.6 bits (147), Expect = 1e-13
Identities = 26/54 (48%), Positives = 39/54 (72%)
Query: 133 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+R+RT+F+ +Q++ LE+ FERT YPD++ RE LA + L EARIQ F R+ +
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAK 55
Score = 49.0 bits (117), Expect = 4e-09
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 63 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+R+RT+F+ +Q++ LE+ FERT YPD++ RE LA + L
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDL 40
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 59.5 bits (144), Expect = 3e-13
Identities = 48/56 (85%), Positives = 49/56 (87%)
Query: 131 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
KQRRSRTTFSA QLDELERAFERTQYPDIYTREELAQRT LTEARIQ F R+ R
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRAR 56
Score = 50.3 bits (120), Expect = 1e-09
Identities = 39/41 (95%), Positives = 39/41 (95%)
Query: 61 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
KQRRSRTTFSA QLDELERAFERTQYPDIYTREELAQRT L
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNL 41
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 59.0 bits (143), Expect = 4e-13
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 136 RTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
R T++ Q ELE+ F +Y R E+A LTE +I+ F R+M+
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMK 51
Score = 46.7 bits (111), Expect = 2e-08
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 66 RTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
R T++ Q ELE+ F +Y R E+A L
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSL 36
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 58.3 bits (141), Expect = 8e-13
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 133 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+ + FS Q ELE+ FE +Y R+ LA+ +L+E +++T F R+ +
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAK 54
Score = 46.7 bits (111), Expect = 2e-08
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 63 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+ + FS Q ELE+ FE +Y R+ LA+ +L
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQL 39
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 58.3 bits (141), Expect = 8e-13
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 134 RSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
R RT FS++QL L+R F +Y R++L+ L EA+I+ F + +
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
Score = 45.6 bits (108), Expect = 4e-08
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 64 RSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
R RT FS++QL L+R F +Y R++L+ L
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGL 38
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 58.3 bits (141), Expect = 1e-12
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 131 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
K R RT + +QL L + PD +E+L + T L+ I+ F ++ +
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCK 57
Score = 47.5 bits (113), Expect = 1e-08
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 61 KQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
K R RT + +QL L + PD +E+L + T L
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGL 42
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 57.7 bits (139), Expect = 2e-12
Identities = 29/55 (52%), Positives = 40/55 (72%)
Query: 132 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
QRR RT F++QQL +LE F+R +YPD+ TREE+A T LTEAR++ F R+ +
Sbjct: 1 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAK 55
Score = 50.7 bits (121), Expect = 6e-10
Identities = 23/40 (57%), Positives = 30/40 (75%)
Query: 62 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
QRR RT F++QQL +LE F+R +YPD+ TREE+A T L
Sbjct: 1 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNL 40
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 57.2 bits (138), Expect = 2e-12
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 133 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
R+ R +S QL ELER + ++ R +++ T L+E +I F R+++
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVK 55
Score = 45.2 bits (107), Expect = 8e-08
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 63 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
R+ R +S QL ELER + ++ R +++ T L
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSL 40
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 56.9 bits (137), Expect = 7e-12
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 122 SEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFI 181
++ P RT F+ +QL ELE+ F +Y R E+A +L E +++ F
Sbjct: 17 AKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQ 76
Query: 182 VRKMR 186
R+M+
Sbjct: 77 NRRMK 81
Score = 44.2 bits (104), Expect = 3e-07
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 52 SEPGIPLKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
++ P RT F+ +QL ELE+ F +Y R E+A +L
Sbjct: 17 AKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLEL 66
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 54.5 bits (131), Expect = 2e-11
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 136 RTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+++ S Q LE+ F R Q + +EE+A++ +T +++ FI ++MR
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 51
Score = 43.3 bits (102), Expect = 3e-07
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 66 RTTFSAQQLDELERAFERTQYPDIYTREELAQRT 99
+++ S Q LE+ F R Q + +EE+A++
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKC 34
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 54.5 bits (131), Expect = 2e-11
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 134 RSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
R RT F+ QL LE+ F + Y R ELA + L E+ I+ F R+M+
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMK 53
Score = 43.4 bits (102), Expect = 3e-07
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 64 RSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
R RT F+ QL LE+ F + Y R ELA + L
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNL 38
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 54.2 bits (130), Expect = 3e-11
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 133 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
R+ RT F+ QL LER F + QY I R E + LTE +++ F R+ +
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAK 54
Score = 43.4 bits (102), Expect = 4e-07
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 63 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
R+ RT F+ QL LER F + QY I R E + L
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSL 39
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 54.7 bits (131), Expect = 4e-11
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 15/69 (21%)
Query: 133 RRSRTTFSAQQLDELERAFERTQYPDIYTREELA---------------QRTKLTEARIQ 177
R SR T+ + L +E F QYPD REE+A ++T ++
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 60
Query: 178 TIFIVRKMR 186
F R+
Sbjct: 61 NWFANRRKE 69
Score = 51.6 bits (123), Expect = 6e-10
Identities = 15/53 (28%), Positives = 19/53 (35%)
Query: 63 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSG 115
R SR T+ + L +E F QYPD REE+A
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLER 53
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 53.3 bits (128), Expect = 5e-11
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 136 RTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIF 180
R F+ Q L F+ + P + ++Q+ L + + F
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFF 46
Score = 44.5 bits (105), Expect = 1e-07
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 66 RTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
R F+ Q L F+ + P + ++Q+ L
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGL 37
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 53.9 bits (129), Expect = 5e-11
Identities = 12/59 (20%), Positives = 26/59 (44%)
Query: 128 LKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
L + ++R RT+ + LE F + P + +A + L + ++ F R+ +
Sbjct: 4 LVQARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQK 62
Score = 45.8 bits (108), Expect = 6e-08
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 58 LKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFP 103
L + ++R RT+ + LE F + P + +A + L
Sbjct: 4 LVQARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEK 49
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 53.5 bits (128), Expect = 8e-11
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 128 LKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
L K+R+ R F+ Q ELER F + +Y RE LA +LT +++ F + +
Sbjct: 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYK 63
Score = 45.0 bits (106), Expect = 1e-07
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 58 LKRKQRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
L K+R+ R F+ Q ELER F + +Y RE LA +L
Sbjct: 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRL 48
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 52.6 bits (126), Expect = 1e-10
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 134 RSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+ RTT S D LER F P +A+ L + ++ F R+ R
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQR 53
Score = 43.4 bits (102), Expect = 3e-07
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 64 RSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLFP 103
+ RTT S D LER F P +A+ L
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEK 40
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 52.4 bits (126), Expect = 1e-10
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 133 RRSRTTFSAQQLDELERAFERTQ---YPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+ R + + + YP ++++A +T LT ++ FI + R
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 59
Score = 39.7 bits (93), Expect = 7e-06
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 63 RRSRTTFSAQQLDELERAFERTQ---YPDIYTREELAQRTKL 101
+ R + + + YP ++++A +T L
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNL 44
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 51.9 bits (124), Expect = 3e-10
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 133 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
RR+RTTF++ Q+ ELE+ F + +Y +L+ + L A+++ F R+ R
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRR 55
Score = 41.8 bits (98), Expect = 2e-06
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 63 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
RR+RTTF++ Q+ ELE+ F + +Y +L+ + L
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLAL 40
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 52.3 bits (125), Expect = 3e-10
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 113 SSGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFER----TQYPDIYTREELAQR 168
S GS+ S G +R RT F+A+Q +++ ER Q D E+
Sbjct: 3 SGSSGSNPSSSGG-----TTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAE 57
Query: 169 TKLTEARIQTIFIVRKMRG 187
T + ++ K G
Sbjct: 58 TGVRRQVLKIWMHNNKNSG 76
Score = 40.8 bits (95), Expect = 5e-06
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 43 SDGEGSDCDSEPGIPLKRKQRRSRTTFSAQQLDELERAFER----TQYPDIYTREELAQR 98
S GS+ S G +R RT F+A+Q +++ ER Q D E+
Sbjct: 3 SGSSGSNPSSSGG-----TTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAE 57
Query: 99 TKL 101
T +
Sbjct: 58 TGV 60
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 51.5 bits (123), Expect = 4e-10
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 132 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+R+ R FS Q+ ELER F++ +Y RE LA LT +++ F + +
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYK 56
Score = 41.1 bits (96), Expect = 3e-06
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 62 QRRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
+R+ R FS Q+ ELER F++ +Y RE LA L
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHL 41
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 50.9 bits (122), Expect = 5e-10
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 134 RSRTTFSAQQLDELERAFER-TQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+ + D LE+ F T+YPD + L+++ + +IQ F R+ +
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQ 56
Score = 40.5 bits (95), Expect = 3e-06
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 64 RSRTTFSAQQLDELERAFER-TQYPDIYTREELAQRTKL 101
+ + D LE+ F T+YPD + L+++
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDW 41
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 50.7 bits (121), Expect = 8e-10
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 133 RRSRTTFSAQQLDELERAFE---RTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
RR R F+ Q + L F YP +EELA++ +T +++ F +++R
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 58
Score = 39.2 bits (91), Expect = 2e-05
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 63 RRSRTTFSAQQLDELERAFE---RTQYPDIYTREELAQRTKL 101
RR R F+ Q + L F YP +EELA++ +
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGI 43
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 50.4 bits (120), Expect = 1e-09
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 133 RRSRTTFSAQQLDELERAFERT-QYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
T + Q++ LE F + ++PD T +A LTE + Q F R
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAE 56
Score = 41.5 bits (97), Expect = 2e-06
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 63 RRSRTTFSAQQLDELERAFERT-QYPDIYTREELAQRTKL 101
T + Q++ LE F + ++PD T +A L
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGL 41
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 48.6 bits (116), Expect = 3e-09
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 140 SAQQLDELERAF-ERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+AQ LE+ F T++PD E L+++ IQ F R+ +
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQ 48
Score = 37.4 bits (87), Expect = 5e-05
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 70 SAQQLDELERAF-ERTQYPDIYTREELAQRTKL 101
+AQ LE+ F T++PD E L+++
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDW 33
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 48.4 bits (115), Expect = 4e-09
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 136 RTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
RT+ LE++F Q P +A++ + + I+ F R+ +
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQK 52
Score = 38.8 bits (90), Expect = 2e-05
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 66 RTTFSAQQLDELERAFERTQYPDIYTREELAQRTKL 101
RT+ LE++F Q P +A++ +
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNM 37
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 48.2 bits (115), Expect = 6e-09
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 133 RRSRTTFSAQQLDELERAFERTQ---YPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
R R F+ + + LE F + Y D E L + T L+ +I+ R+ +
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 55
Score = 36.7 bits (85), Expect = 1e-04
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 63 RRSRTTFSAQQLDELERAFERTQ---YPDIYTREELAQRTKL 101
R R F+ + + LE F + Y D E L + T L
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSL 40
>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 46.1 bits (110), Expect = 3e-08
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 5 DRLIKEGLCDRGSAPSVSAISRLLR 29
DRL+ E +CD + PSVS+I+R++R
Sbjct: 35 DRLLAERVCDNDTVPSVSSINRIIR 59
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 46.2 bits (109), Expect = 4e-08
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 131 KQRRSRTTFSAQQLDELERAFERT-QYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
RSRT S + L L+ YPD L+ + L + I F ++
Sbjct: 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62
Score = 37.0 bits (85), Expect = 1e-04
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 61 KQRRSRTTFSAQQLDELERAFERT-QYPDIYTREELAQRTKL 101
RSRT S + L L+ YPD L+ + L
Sbjct: 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDL 47
>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 65
Score = 45.0 bits (107), Expect = 8e-08
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 5 DRLIKEGLCDRGSAPSVSAISRLLRGHEGD 34
DRL+ EG+C + PSVS+I+R+LR +
Sbjct: 33 DRLLSEGVCTNDNIPSVSSINRVLRNLASE 62
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 43.6 bits (102), Expect = 5e-07
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 136 RTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTI 179
R + L +A+ER + P RE L + E + +
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGV 44
Score = 41.3 bits (96), Expect = 3e-06
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 66 RTTFSAQQLDELERAFERTQYPDIYTREELAQRT 99
R + L +A+ER + P RE L +
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEEC 34
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 38.9 bits (90), Expect = 2e-05
Identities = 13/54 (24%), Positives = 21/54 (38%)
Query: 133 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
+ +A+QL L+ +F + L +TKLT I F +K
Sbjct: 5 PQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKS 58
Score = 30.5 bits (68), Expect = 0.023
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 63 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRT 99
+ +A+QL L+ +F + L +T
Sbjct: 5 PQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQT 41
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 35.5 bits (81), Expect = 4e-04
Identities = 12/54 (22%), Positives = 20/54 (37%)
Query: 133 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRTKLTEARIQTIFIVRKMR 186
S + +QL L+ F + Q+ ++L Q T L I F +
Sbjct: 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYA 57
Score = 27.8 bits (61), Expect = 0.20
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 63 RRSRTTFSAQQLDELERAFERTQYPDIYTREELAQRT 99
S + +QL L+ F + Q+ ++L Q T
Sbjct: 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQIT 40
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 123
Score = 35.7 bits (82), Expect = 8e-04
Identities = 17/24 (70%), Positives = 23/24 (95%)
Query: 5 DRLIKEGLCDRGSAPSVSAISRLL 28
++LI+EG+CDR +APSVSAISRL+
Sbjct: 100 EKLIREGVCDRSTAPSVSAISRLV 123
>d1vkia_ d.116.1.1 (A:) Hypothetical protein Atu3699 {Agrobacterium
tumefaciens, strain C58 [TaxId: 358]}
Length = 165
Score = 26.2 bits (57), Expect = 2.2
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 142 QQLDELERAFERTQYPDIYTREELAQ-RTKLTEARIQTIFIVRKMR 186
+ LD L + Q+ ++T E R + + +F+ K
Sbjct: 10 EFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKD 55
Score = 26.2 bits (57), Expect = 2.2
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 72 QQLDELERAFERTQYPDIYTREELAQRTKLFP 103
+ LD L + Q+ ++T E L P
Sbjct: 10 EFLDGLGISHTTKQHEPVFTVAESQSLRDLIP 41
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 26.0 bits (57), Expect = 3.1
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 73 QLDELERAFERTQYPDIYTREELAQRTKLF 102
LDEL + P + EL +R + F
Sbjct: 3 HLDELVKTASLKGEPSDMDKAELRRRQQAF 32
>d2af7a1 a.152.1.2 (A:1-119) Gamma-carboxymuconolactone
decarboxylase, CMD {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 119
Score = 24.8 bits (54), Expect = 3.9
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 76 ELERAFERTQYPDIYTREELAQRTKLFPHFLIIIEQQSSGE 116
+L R Y D+Y+R L +T+ + ++ +
Sbjct: 32 DLARFVAEFAYGDVYSRGVLDLKTRELLTLAALTVLRADDQ 72
>d1vjfa_ d.116.1.1 (A:) Hypothetical protein CC0111 {Caulobacter
crescentus [TaxId: 155892]}
Length = 168
Score = 25.0 bits (54), Expect = 5.2
Identities = 5/46 (10%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 142 QQLDELERAFERTQYPDIYTREELAQ-RTKLTEARIQTIFIVRKMR 186
D + +P ++ EE + + + + +F+
Sbjct: 9 AFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKNLFLKDAKG 54
Score = 25.0 bits (54), Expect = 5.2
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 72 QQLDELERAFERTQYPDIYTREELAQRTKLFP 103
D + +P ++ EE + P
Sbjct: 9 AFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMP 40
>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 162
Score = 24.9 bits (53), Expect = 6.0
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 58 LKRKQRRSRTTFSAQQLDELERAFE 82
+ +Q +R S + + E + AF+
Sbjct: 3 MTDQQAEARAFLSEEMIAEFKAAFD 27
Score = 24.9 bits (53), Expect = 6.0
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 128 LKRKQRRSRTTFSAQQLDELERAFE 152
+ +Q +R S + + E + AF+
Sbjct: 3 MTDQQAEARAFLSEEMIAEFKAAFD 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.380
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 666,871
Number of extensions: 28826
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 82
Length of query: 187
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,309,196
Effective search space: 140083972
Effective search space used: 140083972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)