BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15515
(242 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q924M5|BOLL_MOUSE Protein boule-like OS=Mus musculus GN=Boll PE=2 SV=2
Length = 281
Score = 137 bits (345), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 97/136 (71%), Gaps = 8/136 (5%)
Query: 31 VNN--NAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGF 88
+NN + P+YGTV+P R+FVGGI T E++L + FSQYG VK+VKIV DRAG+SKGYGF
Sbjct: 18 LNNPTSGPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGF 77
Query: 89 ITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQGFTGTYDSLPTVTSPVPPVPTSNMY 148
ITF+++E+A+++ ++++ + +K+K+LNI PAI+KQ SL +P T +
Sbjct: 78 ITFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQVGIPRSSL------MPAAGTMYLT 131
Query: 149 YHNGLPYTYHNGMAFF 164
G PYTYHNG+A+F
Sbjct: 132 TSTGYPYTYHNGVAYF 147
>sp|Q8WP23|BOLL_MACFA Protein boule-like OS=Macaca fascicularis GN=BOLL PE=2 SV=2
Length = 283
Score = 137 bits (345), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 97/136 (71%), Gaps = 8/136 (5%)
Query: 31 VNN--NAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGF 88
+NN +AP+YGTV+P R+FVGGI T E +L + FSQYG VK+VKIV DRAG+SKGYGF
Sbjct: 18 LNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGF 77
Query: 89 ITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQGFTGTYDSLPTVTSPVPPVPTSNMY 148
+TF+++E+A+++ ++++ + +K+K+LNI PAI+KQ S+ +P T +
Sbjct: 78 VTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQVGIPRSSI------MPAAGTMYLT 131
Query: 149 YHNGLPYTYHNGMAFF 164
G PYTYHNG+A+F
Sbjct: 132 TSTGYPYTYHNGVAYF 147
>sp|Q8N9W6|BOLL_HUMAN Protein boule-like OS=Homo sapiens GN=BOLL PE=1 SV=2
Length = 283
Score = 137 bits (345), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 101/145 (69%), Gaps = 8/145 (5%)
Query: 31 VNN--NAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGF 88
+NN +AP+YGTV+P R+FVGGI T E +L + FSQYG VK+VKIV DRAG+SKGYGF
Sbjct: 18 LNNPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGF 77
Query: 89 ITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQGFTGTYDSLPTVTSPVPPVPTSNMY 148
+TF+++E+A+++ ++++ + +K+K+LNI PAI+KQ S+ +P T +
Sbjct: 78 VTFETQEDAQKILQEAEKLNYKDKKLNIGPAIRKQQVGIPRSSI------MPAAGTMYLT 131
Query: 149 YHNGLPYTYHNGMAFFPSNGQSMVP 173
G PYTYHNG+A+F + + VP
Sbjct: 132 TSTGYPYTYHNGVAYFHTPEVTSVP 156
>sp|Q24207|BOULE_DROME Protein boule OS=Drosophila melanogaster GN=bol PE=2 SV=1
Length = 228
Score = 131 bits (329), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 86/118 (72%), Gaps = 7/118 (5%)
Query: 35 APKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSE 94
APKYGT++P R+FVGGI+ TTE +L +FS YG VK KI+VDRAG+SKGYGF+TF++E
Sbjct: 24 APKYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTFETE 83
Query: 95 EEAKRLQKDSDNIMFKEKRLNIAPAIKK-----QGFTGTYDSLPTVTSPVPPVPTSNM 147
+EA+RLQ D + ++ ++++LNIAPAIKK Q T ++ T+ PP P SN+
Sbjct: 84 QEAQRLQADGECVVLRDRKLNIAPAIKKQPNPLQSIVATNGAVYYTTT--PPAPISNI 139
>sp|Q20870|DAZ1_CAEEL DAZ protein 1 OS=Caenorhabditis elegans GN=daz-1 PE=2 SV=3
Length = 499
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 61/89 (68%), Gaps = 1/89 (1%)
Query: 35 APKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSE 94
AP ++P R+FVGG ++TTE EL E F ++ VK VK+V G SKGYGFITF++E
Sbjct: 58 APPTYELIPNRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETE 117
Query: 95 EEAKRLQK-DSDNIMFKEKRLNIAPAIKK 122
++A+ ++K + F+ ++LN+ PAI+K
Sbjct: 118 DQAEEIRKLTPKQLEFRSRKLNLGPAIRK 146
>sp|Q9BGN8|DAZL_CALJA Deleted in azoospermia-like OS=Callithrix jacchus GN=DAZL PE=2 SV=1
Length = 296
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 7/149 (4%)
Query: 1 MSGAHPSEGSSNPSSPSSTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDEL 60
MS A+P +S S ++TQ+++ Q V P+ G ++P VFVGGI E E+
Sbjct: 1 MSAANPETPNSTISREANTQSSSAATSQGYV---LPE-GKIMPNTVFVGGIDVRMDETEI 56
Query: 61 CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120
F++YG VK+VKI+ DR G+SKGYGF++F ++ + +++ + I F K+L + PAI
Sbjct: 57 RGFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVESQ--INFHGKKLKLGPAI 114
Query: 121 KKQGFTGTY-DSLPTVTSPVPPVPTSNMY 148
+KQ + P V + PP N++
Sbjct: 115 RKQNLCAYHVQPRPLVFNHPPPPQFQNVW 143
>sp|Q76CY5|DAZL_XENTR Deleted in azoospermia-like OS=Xenopus tropicalis GN=dazl PE=2 SV=1
Length = 286
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G V+P VFVGGI T E + LF +YG VK +KI+ DR G+SKGYGF++F E + +
Sbjct: 25 GKVIPNTVFVGGIDITMDEMAIGNLFEKYGKVKDLKIITDRTGVSKGYGFVSFYDEVDVQ 84
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQGFTGTY-DSLPTVTSP 138
++ K N F K+L + PAI+K TY + P V SP
Sbjct: 85 KIVKSQIN--FHGKKLKLGPAIRKMQRICTYVQTSPVVISP 123
>sp|O57437|DAZLA_XENLA Deleted in azoospermia-like-A OS=Xenopus laevis GN=dazl-a PE=1 SV=1
Length = 286
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G ++P VFVGGI T E E+ + F+++G VK+VKI+ DR G+SKGYGFI+F E + +
Sbjct: 28 GEIMPNTVFVGGIDITMDEIEIRDFFTRFGNVKEVKIITDRTGVSKGYGFISFSDEVDVQ 87
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKK 122
++ K I F K+L + PAI+K
Sbjct: 88 KIVK--SQISFHGKKLKLGPAIRK 109
>sp|Q13117|DAZ2_HUMAN Deleted in azoospermia protein 2 OS=Homo sapiens GN=DAZ2 PE=1 SV=3
Length = 558
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G +VP VFVGGI + E E+ F +YG VK+VKI+ +R G+SKGYGF++F ++ + +
Sbjct: 35 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 94
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQ 123
++ I F K+L + PAI+KQ
Sbjct: 95 KI--VGSQIHFHGKKLKLGPAIRKQ 117
>sp|Q4V7Y4|DAZLB_XENLA Deleted in azoospermia-like-B OS=Xenopus laevis GN=dazl-b PE=2 SV=2
Length = 286
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G ++P VFVGGI T E E+ + F+++G VK+VKI+ DR G+SKGYGFI+F E + +
Sbjct: 28 GKIMPNTVFVGGIDITMDEIEIRDFFTRFGNVKEVKIITDRTGVSKGYGFISFSDEVDIQ 87
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKK 122
++ K I F K+L + PAI+K
Sbjct: 88 KIVK--SQISFHGKKLKLGPAIRK 109
>sp|Q9NR90|DAZ3_HUMAN Deleted in azoospermia protein 3 OS=Homo sapiens GN=DAZ3 PE=1 SV=1
Length = 486
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G +VP VFVGGI + E E+ F +YG VK+VKI+ +R G+SKGYGF++F ++ + +
Sbjct: 35 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 94
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQ 123
++ I F K+L + PAI+KQ
Sbjct: 95 KI--VGSQIHFHGKKLKLGPAIRKQ 117
>sp|Q64368|DAZL_MOUSE Deleted in azoospermia-like OS=Mus musculus GN=Dazl PE=1 SV=1
Length = 298
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 60/95 (63%), Gaps = 3/95 (3%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G ++P VFVGGI E E+ F++YG VK+VKI+ DR G+SKGYGF++F ++ + +
Sbjct: 35 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQ 94
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQGFTGTYDSLP 133
++ + I F K+L + PAI+KQ TY P
Sbjct: 95 KIVE--SQINFHGKKLKLGPAIRKQNLC-TYHVQP 126
>sp|Q95192|DAZL_MACFA Deleted in azoospermia-like OS=Macaca fascicularis GN=DAZL PE=2
SV=3
Length = 295
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G ++P VFVGGI E E+ F++YG VK+VKI+ DR G+SKGYGF++F ++ + +
Sbjct: 35 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQ 94
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQGFTGTY-DSLPTVTSPVPPVPTSNMY 148
++ + I F K+L + PAI+KQ + P V + PP N++
Sbjct: 95 KIVESQ--INFHGKKLKLGPAIRKQNLCAYHVQPRPLVFNHPPPPQFQNVW 143
>sp|Q92904|DAZL_HUMAN Deleted in azoospermia-like OS=Homo sapiens GN=DAZL PE=1 SV=1
Length = 295
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G ++P VFVGGI E E+ F++YG VK+VKI+ DR G+SKGYGF++F ++ + +
Sbjct: 35 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQ 94
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQGFTGTY-DSLPTVTSPVPPVPTSNMY 148
++ + I F K+L + PAI+KQ + P V + PP N++
Sbjct: 95 KIVESQ--INFHGKKLKLGPAIRKQNLCAYHVQPRPLVFNHPPPPQFQNVW 143
>sp|Q86SG3|DAZ4_HUMAN Deleted in azoospermia protein 4 OS=Homo sapiens GN=DAZ4 PE=1 SV=2
Length = 579
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G +VP VFVGGI + E E+ F +YG VK+VKI+ +R G+SKGYGF++F ++ + +
Sbjct: 35 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 94
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQ 123
++ I F K+L + PAI+KQ
Sbjct: 95 KI--VGSQIHFHGKKLKLGPAIRKQ 117
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G +VP VFVGGI + E E+ F +YG VK+VKI+ +R G+SKGYGF++F ++ + +
Sbjct: 200 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 259
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQ 123
++ I F K+L + PAI+KQ
Sbjct: 260 KI--VGSQIHFHGKKLKLGPAIRKQ 282
>sp|Q9NQZ3|DAZ1_HUMAN Deleted in azoospermia protein 1 OS=Homo sapiens GN=DAZ1 PE=1 SV=2
Length = 744
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G +VP VFVGGI + E E+ F +YG VK+VKI+ +R G+SKGYGF++F ++ + +
Sbjct: 35 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 94
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQ 123
++ I F K+L + PAI+KQ
Sbjct: 95 KI--VGSQIHFHGKKLKLGPAIRKQ 117
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G +VP VFVGGI + E E+ F +YG VK+VKI+ +R G+SKGYGF++F ++ + +
Sbjct: 200 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 259
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQ 123
++ I F K+L + PAI+KQ
Sbjct: 260 KI--VGSQIHFHGKKLKLGPAIRKQ 282
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G +VP VFVGGI + E E+ F +YG VK+VKI+ +R G+SKGYGF++F ++ + +
Sbjct: 365 GKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQ 424
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQ 123
++ I F K+L + PAI+KQ
Sbjct: 425 KI--VGSQIHFHGKKLKLGPAIRKQ 447
>sp|Q804A9|DAZL_CHICK Deleted in azoospermia-like OS=Gallus gallus GN=DAZL PE=2 SV=1
Length = 289
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G ++P VFVGGI E E+ F QYG VK+VKI+ DR G+SKGYGF++F + +
Sbjct: 31 GKIMPNTVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQ 90
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQGFTGTYDSLPTVTSPVPPVPTSNMYYHNGLPYTY 157
++ + I KRL + PAI+KQ +Y P + PP P + + N TY
Sbjct: 91 KIVE--SQISVHGKRLKLGPAIRKQQNLCSYMQ-PRPLAFNPPAPQFHSVWTNQNTETY 146
>sp|Q9YGW7|DAZL_DANRE Deleted in azoospermia-like OS=Danio rerio GN=dazl PE=1 SV=1
Length = 229
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAK 98
G + P +FVGGI E+E+ E F++YG VK+VKI+ R GI KGYGF+ F + + +
Sbjct: 42 GKMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVYFSEDVDIQ 101
Query: 99 RLQKDSDNIMFKEKRLNIAPAIKKQ 123
+ I FK K+L + PAI K+
Sbjct: 102 TIVDQP--ISFKGKKLKLGPAIMKE 124
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 10/153 (6%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105
+++ + + +++L E+FS+YG V K++++ G+S+G+GF+ + + EEA K+ +
Sbjct: 344 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 403
Query: 106 NIMFKEKRLNIAPAIKKQGFTGTYDSL------PTVTSPVPPVPTSNMYYH-NGLPYTYH 158
M K L +A A +K+ SL P SPVP P S ++H G P +
Sbjct: 404 GKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPS-PMSGFHHHPPGGPMSGP 462
Query: 159 NGMAFFPSNGQSMVPTSPPTVPTQVKILLPPGV 191
+ F NGQ +VP+ P QV+ + PG+
Sbjct: 463 HHPMFIGHNGQGLVPSQPMGYGYQVQFM--PGM 493
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105
VF+ + ++ L E FS +G + K+ +D G SKGYGF+ F+ EE A+ +
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 207
Query: 106 NIMFKEKRLNIAPAIKKQ 123
++ +K++ + +++Q
Sbjct: 208 GMLLNDKQVFVGHFVRRQ 225
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105
V+V + T+DEL + F +YG + ++ D++G S+ +GF+ F S E A + +
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 300
Query: 106 NIMFKEKRLNIAPAIKK 122
I E L + A KK
Sbjct: 301 GISLGEDVLYVGRAQKK 317
Score = 37.7 bits (86), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKR 99
++VG + + E L +LF+Q V +++ D S GY ++ F + E+A R
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASR 114
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKR-LQK 102
++FVGGI+ +T E L E FS+YG V KI+VDR G S+G+ F+TF S EEA +Q
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 103 DSDNIMFKEKRLNIA 117
D ++ + R+N A
Sbjct: 95 DGQDLHGRRIRVNYA 109
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105
+++ + + +++L E+FS+YG V K++++ G+S+G+GF+ + + EEA R + +
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 106 NIMFKEKRLNIAPAIKKQGFTGTYDSLPTVTSPVPPVPTSNMYYHNGLPYTYHNGMAFFP 165
M K L IA A +K+ +L + P P S ++ G P +
Sbjct: 394 GKMIGRKPLYIALAQRKEDRRAHLQAL--FSQIRAPGPMSGFHHPPGGPMPGPPQHMYVG 451
Query: 166 SNGQSMVPTSP 176
NG SMVP+ P
Sbjct: 452 QNGASMVPSQP 462
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105
+F+ + ++ L E FS +G + K+ +D G SKGYGF+ F+ EE A+ +
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 106 NIMFKEKRLNIAPAIKKQ 123
++ +K++ + I++Q
Sbjct: 198 GMLMNDKQVFVGHFIRRQ 215
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105
V+V + EDEL + F ++G++ ++ D++G S+ +GF+ F+ E A + +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 106 NIMFKEKRLNIAPAIKK 122
I + L + A KK
Sbjct: 291 GISLGDDVLYVGRAQKK 307
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKR 99
++ G + TE L +LF V V++ D+ S GY +I F + +A R
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYR 104
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 59.7 bits (143), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEEEAKRLQKD 103
R+F+ I+ +E++ LFSQYG +++V I +D R G SKG+ ++ F +E+A R +
Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370
Query: 104 SDNIMFKEKRLNIAPAIKKQ 123
D +F+ + L+I PA KK+
Sbjct: 371 LDKQIFQGRLLHILPADKKK 390
Score = 41.6 bits (96), Expect = 0.005, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDS 104
R+ V G+ TE++L E FS+ G V VK++ R G S+ + FI + S + A+R K
Sbjct: 3 RLIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKYF 62
Query: 105 DNIMFKEKRLNI 116
+ R+ +
Sbjct: 63 NKSFIDTARIEV 74
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 46 VFVGGITSTTTEDELCELF-SQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQKD 103
+FVG + + T+ L E F + Y VK K+V+DR G +KGYGF+ F E E R +
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 104 SDNIMFKEKRLNIAPAIKKQGFTGTYDS 131
+ + + + I PA K+G TG DS
Sbjct: 217 MNGVPCSTRPMRIGPAASKKGVTGQRDS 244
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSE---EEAKRL 100
VFVGG+ ++ T+D L +FSQYG + VKI K GF+ F + EEA R+
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPA-----GKRCGFVQFSEKSCAEEALRM 315
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRL 100
K++FVGGI T ED L E F QYG ++ ++I+ DR +G +G+ F+TF+ + ++
Sbjct: 105 KKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKI 162
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEEE 96
+++F+GG++ TT++ L E F Q+G + ++ D + S+G+GF+T+ S +E
Sbjct: 14 RKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDE 67
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 26 NYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISK 84
N AA+ NN K G+ P R++VG + TED L +F +G ++ +++++D G SK
Sbjct: 233 NRAAAMANNLQK-GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK 291
Query: 85 GYGFITFDSEEEAKR 99
GYGFITF E AK+
Sbjct: 292 GYGFITFSDSECAKK 306
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 26 NYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISK 84
N AA+ NN K G+ P R++VG + TED L +F +G ++ +++++D G SK
Sbjct: 233 NRAAAMANNLQK-GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK 291
Query: 85 GYGFITFDSEEEAKR 99
GYGFITF E AK+
Sbjct: 292 GYGFITFSDSECAKK 306
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 26 NYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISK 84
N AA+ NN K G+ P R++VG + TED L +F +G ++ +++++D G SK
Sbjct: 233 NRAAAMANNLQK-GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK 291
Query: 85 GYGFITFDSEEEAKR 99
GYGFITF E AK+
Sbjct: 292 GYGFITFSDSECAKK 306
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEE 95
V K++FVGGI T E L + F++YG + ++I+ DR +G +G+GF+TFD +
Sbjct: 97 VTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 152
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG-ISKGYGFITFDSEEE 96
+++F+GG++ TTE+ L + Q+G + ++ D A S+G+GF+TF S E
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEE 95
V K++FVGGI T E L + F +YG + ++I+ DR +G +G+GF+TFD +
Sbjct: 109 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG-ISKGYGFITFDS 93
+++F+GG++ TTE+ L + Q+G + ++ D A S+G+GF+TF S
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS 71
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEE 95
V K++FVGGI T E L + F +YG + ++I+ DR +G +G+GF+TFD +
Sbjct: 109 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG-ISKGYGFITFDS 93
+++F+GG++ TTE+ L + Q+G + ++ D A S+G+GF+TF S
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS 71
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEE 95
V K++FVGGI T E L + F +YG + ++I+ DR +G +G+GF+TFD +
Sbjct: 109 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG-ISKGYGFITFDS 93
+++F+GG++ TTE+ L + Q+G + ++ D A S+G+GF+TF S
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS 71
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEE 95
V K++FVGGI T E L + F +YG + ++I+ DR +G +G+GF+TFD +
Sbjct: 109 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 164
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG-ISKGYGFITFDS 93
+++F+GG++ TTE+ L + Q+G + ++ D A S+G+GF+TF S
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS 71
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEE 95
V K++FVGGI T E L + F +YG + ++I+ DR +G +G+GF+TFD +
Sbjct: 97 VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHD 152
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAG-ISKGYGFITFDS 93
+++F+GG++ TTE+ L + Q+G + ++ D A S+G+GF+TF S
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS 59
>sp|Q9W4D2|RNP4F_DROME RNA-binding protein 4F OS=Drosophila melanogaster GN=Rnp4F PE=1
SV=1
Length = 941
Score = 55.5 bits (132), Expect = 4e-07, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 8/144 (5%)
Query: 2 SGAHPSEGSSNPSSPSSTQNNAFFNYQAAVNNNAPKYGTVVPKRVFVGGITSTTTEDELC 61
S PS G+++P S NA A +N + ++FV + +++EL
Sbjct: 687 SRTEPSGGATSPPSKVKGPANA-----EAKESNFKYSPNMEINKIFVRNLHPACSKEELH 741
Query: 62 ELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121
ELFS +G +K V++V KG ++ F+ EA+R D +FK +NI+ AI
Sbjct: 742 ELFSPFGTIKDVRLVHKLNKQFKGIAYVEFEKPGEAQRAVAGRDGCLFKG--MNISVAIS 799
Query: 122 KQGFTGTYDSLPTVTSPVPPVPTS 145
GT P+V +P VPTS
Sbjct: 800 NPPPRGTSAVKPSV-APKRRVPTS 822
>sp|Q15415|RBY1F_HUMAN RNA-binding motif protein, Y chromosome, family 1 member F/J
OS=Homo sapiens GN=RBMY1F PE=2 SV=2
Length = 496
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P ++F+GG+ T E L +F ++G + +V ++ DR S+G+ FITF++ +AK K
Sbjct: 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66
Query: 103 DSDNIMFKEKRLNIAPAIK 121
D + K + + A K
Sbjct: 67 DMNGTSLHGKAIKVEQAKK 85
>sp|Q9FZ84|RBG6_ARATH Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis
thaliana GN=RBG6 PE=2 SV=1
Length = 155
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 18 STQNNAFFNYQAAVNNNAPKYG--TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKI 75
S N F +A +NA G ++ P ++FVGG++ +T + L E F +G + +
Sbjct: 8 SRAGNIFRQPRALQASNAMLQGNLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVV 67
Query: 76 VVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119
V+DR +G+S+G+GF+T+DS E A + N + + + PA
Sbjct: 68 VLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHPA 112
>sp|Q5XG24|RNP1A_XENLA RNA-binding protein with serine-rich domain 1-A OS=Xenopus laevis
GN=rnps1-a PE=2 SV=1
Length = 283
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR--AGISKGYGFITFDSEEEAKRL 100
P +V +G +T T+D + E+FS YG +K + + VDR +SKGY ++ F++ EEA++
Sbjct: 137 PTKVHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKA 196
Query: 101 QKDSD 105
K D
Sbjct: 197 LKHMD 201
>sp|Q9JLI8|SART3_MOUSE Squamous cell carcinoma antigen recognized by T-cells 3 OS=Mus
musculus GN=Sart3 PE=2 SV=1
Length = 962
Score = 54.7 bits (130), Expect = 7e-07, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 14/157 (8%)
Query: 37 KYGTVVPK-RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEE 95
+Y T + K ++F+ G+ + T++EL ++ +G VK +++V +RAG KG ++ +++E
Sbjct: 793 RYSTTLEKHKLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEYENES 852
Query: 96 EAKRLQKDSDNIMFKEKRLNIAPAIKKQGFTGTYDSLPTV-TSPVPPVPTSNMYYHNG-- 152
+A + D + +E + +A + Q P V T+P P+ MY G
Sbjct: 853 QASQAVMKMDGMTIRENVIKVAISNPPQ---RKVPEKPEVRTAPGAPMLPRQMYGARGKG 909
Query: 153 ------LPYTYH-NGMAFFPSNGQSMVPTSPPTVPTQ 182
LP G A NG + P P+V T+
Sbjct: 910 RTQLSLLPRALQRQGAAPQAENGPAPGPAVAPSVATE 946
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ GIS+G GFI FD
Sbjct: 117 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 176
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 177 IEAEEAIK 184
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 56 TEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRL 114
T++EL LF G ++ K+V D+ G S GYGF+ + ++A++ + + + K +
Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 110
Query: 115 NIAPA 119
++ A
Sbjct: 111 KVSYA 115
Score = 34.3 bits (77), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEEEA 97
+FV + E L ++F +G V VK++ D KG+GF+T + +EA
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEA 331
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo
sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P ++F+GG+ T E L +F ++G + +V ++ DR S+G+ FITF++ +AK K
Sbjct: 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66
Query: 103 DSDNIMFKEKRLNIAPAIK 121
D + K + + A K
Sbjct: 67 DMNGKSLHGKAIKVEQAKK 85
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E OS=Homo
sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P ++F+GG+ T E L +F ++G + +V ++ DR S+G+ FITF++ +AK K
Sbjct: 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66
Query: 103 DSDNIMFKEKRLNIAPAIK 121
D + K + + A K
Sbjct: 67 DMNGKSLHGKAIKVEQAKK 85
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ GIS+G GFI FD
Sbjct: 117 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 176
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 177 IEAEEAIK 184
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 56 TEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRL 114
T++EL LF G ++ K+V D+ G S GYGF+ + ++A++ + + + K +
Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 110
Query: 115 NIAPA 119
++ A
Sbjct: 111 KVSYA 115
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEEEA 97
+FV + E L ++F +G V VK++ D KG+GF+T + +EA
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEA 330
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ GIS+G GFI FD
Sbjct: 117 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 176
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 177 IEAEEAIK 184
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 56 TEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRL 114
T++EL LF G ++ K+V D+ G S GYGF+ + ++A++ + + + K +
Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 110
Query: 115 NIAPA 119
++ A
Sbjct: 111 KVSYA 115
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEEEA 97
+FV + E L ++F +G V VK++ D KG+GF+T + +EA
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEA 330
>sp|Q3KPW1|RNP1B_XENLA RNA-binding protein with serine-rich domain 1-B OS=Xenopus laevis
GN=rnps1-b PE=2 SV=1
Length = 283
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR--AGISKGYGFITFDSEEEAKRL 100
P +V +G +T T+D + E+FS YG +K + + VDR +SKGY ++ F++ EEA++
Sbjct: 137 PTKVHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKA 196
Query: 101 QKDSD 105
K D
Sbjct: 197 LKHMD 201
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D OS=Homo
sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P ++F+GG+ T E L +F ++G + +V ++ DR S+G+ FITF++ +AK K
Sbjct: 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66
Query: 103 DSDNIMFKEKRLNIAPAIK 121
D + K + + A K
Sbjct: 67 DMNGKSLHGKAIKVEQAKK 85
>sp|P0DJD4|RBY1C_HUMAN RNA-binding motif protein, Y chromosome, family 1 member C OS=Homo
sapiens GN=RBMY1C PE=1 SV=1
Length = 496
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P ++F+GG+ T E L +F ++G + +V ++ DR S+G+ FITF++ +AK K
Sbjct: 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66
Query: 103 DSDNIMFKEKRLNIAPAIK 121
D + K + + A K
Sbjct: 67 DMNGKSLHGKAIKVEQAQK 85
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo
sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQK 102
P ++F+GG+ T E L +F ++G + +V ++ DR S+G+ FITF++ +AK K
Sbjct: 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAK 66
Query: 103 DSDNIMFKEKRLNIAPAIK 121
D + K + + A K
Sbjct: 67 DMNGKSLHGKAIKVEQAKK 85
>sp|Q8CH84|ELAV2_RAT ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1
Length = 359
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ GIS+G GFI FD
Sbjct: 117 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 176
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 177 IEAEEAIK 184
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 56 TEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRL 114
T++EL LF G ++ K+V D+ G S GYGF+ + ++A++ + + + K +
Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 110
Query: 115 NIAPA 119
++ A
Sbjct: 111 KVSYA 115
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEEEA 97
+FV + E L ++F +G V VK++ D KG+GF+T + +EA
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEA 330
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD 103
++FVGGI E E FSQ+G + ++++D+ G S+G+GF+T+DS + R+ ++
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303
Query: 104 SDNIMFKEKRLNIAPA 119
I FK++++ I A
Sbjct: 304 K-FIDFKDRKIEIKRA 318
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFD 92
++F+GG+ TTED L E F +YG V +KI+ D A G S+G+GF++F+
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFE 208
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 36 PKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSE 94
P ++ ++V G+ T T+ EL +LFSQYG + +I+VD+ G+S+G GFI FD
Sbjct: 124 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 183
Query: 95 EEAKRLQK 102
EA+ K
Sbjct: 184 IEAEEAIK 191
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-RAGISKGYGFITFDSEEEA 97
+FV ++ + E L +LF +G V VK++ D KG+GF+T + +EA
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEA 351
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 56 TEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRL 114
T++E LF G ++ K+V D+ G S GYGF+ + ++A++ + + + K +
Sbjct: 58 TQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 117
Query: 115 NIAPA 119
++ A
Sbjct: 118 KVSYA 122
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,487,350
Number of Sequences: 539616
Number of extensions: 4182121
Number of successful extensions: 14870
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 369
Number of HSP's that attempted gapping in prelim test: 13318
Number of HSP's gapped (non-prelim): 1461
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)