Query psy15515
Match_columns 242
No_of_seqs 240 out of 1989
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 23:17:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 4E-19 8.7E-24 141.8 14.0 84 42-125 33-117 (144)
2 KOG0125|consensus 99.7 6.8E-18 1.5E-22 146.7 11.0 86 37-123 90-175 (376)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.6E-17 5.6E-22 148.4 12.5 82 43-124 269-351 (352)
4 KOG0149|consensus 99.7 8.7E-18 1.9E-22 140.4 7.3 82 39-121 8-90 (247)
5 TIGR01659 sex-lethal sex-letha 99.7 9.4E-17 2E-21 145.1 13.3 84 39-122 103-187 (346)
6 PF00076 RRM_1: RNA recognitio 99.7 7.4E-17 1.6E-21 111.5 9.5 70 46-115 1-70 (70)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 6.9E-17 1.5E-21 145.6 11.6 81 43-123 3-84 (352)
8 TIGR01628 PABP-1234 polyadenyl 99.7 4.2E-16 9.1E-21 149.3 16.8 84 41-124 283-366 (562)
9 TIGR01659 sex-lethal sex-letha 99.7 8.6E-16 1.9E-20 138.8 15.4 86 40-125 190-278 (346)
10 KOG0148|consensus 99.7 1.1E-15 2.5E-20 130.0 14.2 83 40-127 161-243 (321)
11 TIGR01645 half-pint poly-U bin 99.6 1.2E-14 2.7E-19 138.7 18.1 82 42-123 203-285 (612)
12 PF14259 RRM_6: RNA recognitio 99.6 2.9E-15 6.4E-20 104.2 9.7 70 46-115 1-70 (70)
13 KOG0122|consensus 99.6 1.5E-15 3.3E-20 127.6 9.6 81 42-122 188-269 (270)
14 TIGR01645 half-pint poly-U bin 99.6 5.3E-15 1.1E-19 141.2 10.5 79 42-120 106-185 (612)
15 KOG4207|consensus 99.6 1.9E-15 4.1E-20 124.3 6.4 81 42-122 12-93 (256)
16 KOG0148|consensus 99.6 4.5E-15 9.8E-20 126.4 8.3 81 43-123 62-143 (321)
17 KOG0107|consensus 99.6 1.2E-14 2.6E-19 116.7 10.1 80 41-124 8-87 (195)
18 PLN03120 nucleic acid binding 99.6 1.4E-14 3.1E-19 124.5 11.0 77 43-122 4-80 (260)
19 TIGR01628 PABP-1234 polyadenyl 99.6 1.6E-14 3.6E-19 138.3 11.4 78 45-122 2-80 (562)
20 smart00362 RRM_2 RNA recogniti 99.6 4.7E-14 1E-18 96.4 10.0 72 45-117 1-72 (72)
21 KOG0111|consensus 99.5 5.2E-15 1.1E-19 122.8 5.2 83 42-124 9-92 (298)
22 KOG0113|consensus 99.5 5.1E-14 1.1E-18 121.4 11.2 83 41-123 99-182 (335)
23 TIGR01622 SF-CC1 splicing fact 99.5 4.5E-14 9.8E-19 131.8 11.5 80 43-122 186-266 (457)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.5 6.6E-14 1.4E-18 132.3 12.8 82 41-122 293-375 (509)
25 PLN03213 repressor of silencin 99.5 3.4E-14 7.3E-19 129.6 10.0 79 41-122 8-88 (759)
26 TIGR01648 hnRNP-R-Q heterogene 99.5 4.6E-14 1E-18 134.4 10.5 79 42-120 57-136 (578)
27 TIGR01648 hnRNP-R-Q heterogene 99.5 1.5E-13 3.3E-18 130.9 13.9 75 43-124 233-309 (578)
28 TIGR01622 SF-CC1 splicing fact 99.5 1.3E-13 2.9E-18 128.6 13.0 83 40-123 86-169 (457)
29 KOG0144|consensus 99.5 1.7E-14 3.7E-19 129.5 5.8 85 42-126 123-210 (510)
30 KOG0145|consensus 99.5 6.4E-14 1.4E-18 118.9 8.7 84 40-123 38-122 (360)
31 KOG0117|consensus 99.5 7.8E-14 1.7E-18 125.8 9.5 80 41-120 81-162 (506)
32 smart00360 RRM RNA recognition 99.5 1.7E-13 3.7E-18 93.1 9.1 70 48-117 1-71 (71)
33 KOG0126|consensus 99.5 3.6E-15 7.9E-20 120.4 0.7 79 42-120 34-113 (219)
34 KOG0121|consensus 99.5 6.4E-14 1.4E-18 107.3 7.2 79 42-120 35-114 (153)
35 COG0724 RNA-binding proteins ( 99.5 1.6E-13 3.5E-18 116.3 10.6 79 43-121 115-194 (306)
36 KOG0108|consensus 99.5 1.4E-13 2.9E-18 126.9 10.2 82 44-125 19-101 (435)
37 PLN03121 nucleic acid binding 99.5 2.6E-13 5.6E-18 115.1 10.8 77 42-121 4-80 (243)
38 cd00590 RRM RRM (RNA recogniti 99.5 5.7E-13 1.2E-17 91.4 10.4 74 45-118 1-74 (74)
39 KOG0117|consensus 99.5 7.4E-13 1.6E-17 119.6 13.8 98 23-127 234-336 (506)
40 KOG0131|consensus 99.5 1.4E-13 3E-18 111.3 6.6 80 42-121 8-88 (203)
41 KOG0130|consensus 99.4 2E-13 4.4E-18 105.5 6.6 85 40-124 69-154 (170)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 9.6E-13 2.1E-17 124.1 11.6 79 41-123 273-352 (481)
43 KOG0144|consensus 99.4 8.8E-13 1.9E-17 118.7 9.9 85 40-124 31-119 (510)
44 smart00361 RRM_1 RNA recogniti 99.4 3.1E-12 6.8E-17 89.5 8.6 61 57-117 2-70 (70)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 2.7E-12 5.8E-17 121.1 10.9 75 43-122 2-78 (481)
46 KOG0114|consensus 99.4 4.1E-12 8.9E-17 94.1 9.4 82 39-122 14-95 (124)
47 KOG0109|consensus 99.4 1.1E-12 2.3E-17 113.1 7.2 73 44-123 3-75 (346)
48 KOG0127|consensus 99.4 3.1E-12 6.6E-17 118.1 9.6 84 43-126 117-200 (678)
49 KOG0145|consensus 99.3 6E-12 1.3E-16 107.0 10.4 83 40-122 275-358 (360)
50 KOG0105|consensus 99.3 4E-12 8.7E-17 103.2 8.0 80 42-123 5-84 (241)
51 PF13893 RRM_5: RNA recognitio 99.3 9.6E-12 2.1E-16 83.0 8.6 56 60-119 1-56 (56)
52 KOG0124|consensus 99.3 1.8E-12 3.9E-17 114.7 4.5 76 44-119 114-190 (544)
53 KOG0123|consensus 99.3 1E-11 2.3E-16 113.1 9.3 84 41-126 74-157 (369)
54 KOG0131|consensus 99.3 7.3E-12 1.6E-16 101.4 7.0 87 40-126 93-181 (203)
55 KOG0146|consensus 99.3 4E-12 8.6E-17 108.5 5.5 85 40-124 282-367 (371)
56 KOG0147|consensus 99.3 5.4E-12 1.2E-16 116.6 6.7 79 45-123 280-359 (549)
57 KOG4212|consensus 99.3 1.1E-11 2.3E-16 111.9 8.5 79 43-121 44-123 (608)
58 KOG0415|consensus 99.3 1.2E-11 2.6E-16 109.1 7.5 84 41-124 237-321 (479)
59 KOG0127|consensus 99.3 3.5E-11 7.5E-16 111.2 10.6 84 41-124 290-380 (678)
60 KOG0132|consensus 99.2 4E-10 8.8E-15 107.7 16.9 75 43-122 421-495 (894)
61 KOG4208|consensus 99.2 7.2E-11 1.6E-15 97.4 10.0 83 40-122 46-130 (214)
62 KOG4205|consensus 99.2 2.2E-11 4.7E-16 108.0 5.1 82 42-124 5-87 (311)
63 KOG0146|consensus 99.2 4.1E-11 8.8E-16 102.4 6.1 84 42-125 18-104 (371)
64 KOG0153|consensus 99.1 2.3E-10 5E-15 100.8 9.3 79 39-122 224-303 (377)
65 TIGR01642 U2AF_lg U2 snRNP aux 99.1 4.4E-10 9.5E-15 106.3 11.6 76 39-120 171-258 (509)
66 KOG0124|consensus 99.1 1.4E-10 2.9E-15 102.9 7.3 80 44-123 211-291 (544)
67 KOG0109|consensus 99.1 1.3E-10 2.9E-15 100.2 6.3 80 37-123 72-151 (346)
68 KOG4661|consensus 99.1 6E-10 1.3E-14 103.6 10.6 82 41-122 403-485 (940)
69 KOG4205|consensus 99.0 4.3E-10 9.2E-15 99.9 6.3 83 43-126 97-180 (311)
70 KOG4206|consensus 99.0 8.6E-10 1.9E-14 92.3 7.5 79 45-125 11-93 (221)
71 KOG0110|consensus 99.0 1.3E-09 2.8E-14 103.5 8.5 78 43-120 515-596 (725)
72 KOG0123|consensus 99.0 2.1E-09 4.6E-14 98.1 8.4 75 45-124 3-77 (369)
73 KOG4849|consensus 98.9 1.3E-08 2.9E-13 89.9 11.9 78 40-117 77-157 (498)
74 KOG0533|consensus 98.9 4.5E-09 9.7E-14 90.1 8.6 85 40-124 80-164 (243)
75 KOG0226|consensus 98.9 9.2E-10 2E-14 93.5 4.3 83 40-122 187-270 (290)
76 KOG0116|consensus 98.9 1.6E-08 3.6E-13 93.0 12.3 80 43-123 288-368 (419)
77 KOG0151|consensus 98.9 1.1E-08 2.3E-13 97.4 10.7 85 39-123 170-258 (877)
78 KOG4212|consensus 98.9 3.6E-09 7.8E-14 95.8 7.0 74 42-119 535-608 (608)
79 KOG1548|consensus 98.9 7.5E-09 1.6E-13 91.3 8.6 83 40-122 131-221 (382)
80 KOG0110|consensus 98.9 1.4E-09 3.1E-14 103.3 4.3 81 43-123 613-694 (725)
81 KOG0106|consensus 98.8 2.9E-09 6.2E-14 89.6 4.6 73 44-123 2-74 (216)
82 KOG1457|consensus 98.8 1.2E-07 2.7E-12 79.4 13.4 89 42-130 33-126 (284)
83 KOG4209|consensus 98.8 1.5E-08 3.2E-13 86.8 6.9 83 39-122 97-180 (231)
84 KOG4454|consensus 98.7 8.5E-09 1.9E-13 86.0 2.4 78 42-120 8-85 (267)
85 PF04059 RRM_2: RNA recognitio 98.6 3.3E-07 7.2E-12 68.0 8.9 79 44-122 2-87 (97)
86 KOG4660|consensus 98.6 3.9E-08 8.6E-13 91.4 4.0 78 34-115 66-143 (549)
87 KOG4211|consensus 98.4 7.3E-07 1.6E-11 82.1 8.5 77 44-123 11-87 (510)
88 PF11608 Limkain-b1: Limkain b 98.4 1.1E-06 2.4E-11 63.0 7.5 72 44-124 3-79 (90)
89 KOG1995|consensus 98.2 1.8E-06 3.9E-11 76.8 5.4 87 40-126 63-158 (351)
90 KOG1190|consensus 98.2 4E-05 8.7E-10 69.4 13.8 77 43-123 297-374 (492)
91 KOG4211|consensus 98.2 4.5E-06 9.8E-11 77.0 6.8 79 43-122 103-182 (510)
92 KOG0120|consensus 98.1 2E-06 4.3E-11 80.6 4.0 84 41-124 287-371 (500)
93 KOG0147|consensus 98.0 2.4E-06 5.1E-11 79.7 1.7 83 40-123 176-259 (549)
94 KOG0106|consensus 97.9 9.7E-06 2.1E-10 68.4 3.3 76 40-122 96-171 (216)
95 COG5175 MOT2 Transcriptional r 97.9 3.5E-05 7.6E-10 68.3 6.8 80 43-122 114-203 (480)
96 KOG2314|consensus 97.9 7.8E-05 1.7E-09 70.0 9.0 81 39-119 54-141 (698)
97 KOG4210|consensus 97.8 1.4E-05 2.9E-10 70.7 3.0 81 43-124 184-266 (285)
98 KOG1365|consensus 97.8 8.6E-05 1.9E-09 66.9 7.8 80 43-122 280-362 (508)
99 KOG1457|consensus 97.8 2.9E-05 6.2E-10 65.4 4.5 63 44-109 211-273 (284)
100 KOG4206|consensus 97.8 0.00013 2.8E-09 61.5 7.9 77 40-120 143-220 (221)
101 KOG4307|consensus 97.7 0.00012 2.5E-09 70.4 8.0 80 39-118 863-943 (944)
102 PF08777 RRM_3: RNA binding mo 97.7 6.4E-05 1.4E-09 56.7 4.9 68 45-117 3-75 (105)
103 KOG3152|consensus 97.6 5.1E-05 1.1E-09 65.0 2.8 70 44-113 75-157 (278)
104 KOG0120|consensus 97.3 0.00067 1.5E-08 63.9 7.7 65 58-122 424-492 (500)
105 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00058 1.3E-08 45.0 5.2 52 44-101 2-53 (53)
106 KOG1456|consensus 97.2 0.0022 4.7E-08 57.9 9.4 82 38-123 282-364 (494)
107 KOG0105|consensus 97.2 0.0011 2.3E-08 54.6 6.7 70 42-117 114-185 (241)
108 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0018 4E-08 48.3 7.4 77 42-120 5-90 (100)
109 KOG1548|consensus 97.2 0.0017 3.7E-08 57.9 7.9 80 40-122 262-352 (382)
110 KOG0129|consensus 97.2 0.0014 3.1E-08 61.2 7.7 63 42-105 258-327 (520)
111 KOG0129|consensus 97.2 0.0013 2.8E-08 61.4 7.4 78 42-120 369-452 (520)
112 KOG1190|consensus 97.1 0.0016 3.4E-08 59.4 7.4 77 42-121 413-490 (492)
113 KOG1855|consensus 97.0 0.00069 1.5E-08 61.9 3.9 66 41-106 229-308 (484)
114 KOG1365|consensus 96.9 0.00062 1.3E-08 61.5 3.0 73 45-118 163-239 (508)
115 KOG2202|consensus 96.9 0.00044 9.6E-09 59.3 1.6 63 58-120 83-146 (260)
116 KOG1996|consensus 96.8 0.0044 9.5E-08 54.3 7.3 65 58-122 301-367 (378)
117 KOG1456|consensus 96.8 0.03 6.5E-07 50.8 12.4 70 50-123 129-200 (494)
118 KOG0128|consensus 96.7 0.0014 3E-08 64.5 3.3 80 43-122 736-815 (881)
119 PF08952 DUF1866: Domain of un 96.6 0.011 2.3E-07 47.0 7.2 70 45-122 29-107 (146)
120 KOG2193|consensus 96.5 0.0018 3.9E-08 59.3 2.5 76 45-125 3-79 (584)
121 KOG0112|consensus 96.5 0.007 1.5E-07 60.0 6.7 77 42-123 454-532 (975)
122 KOG4307|consensus 96.4 0.0021 4.5E-08 62.1 2.7 78 42-119 433-511 (944)
123 KOG0115|consensus 96.4 0.0037 8E-08 53.8 3.9 77 44-120 32-112 (275)
124 PF10309 DUF2414: Protein of u 96.3 0.024 5.2E-07 38.6 6.8 56 42-104 4-62 (62)
125 KOG0128|consensus 96.2 0.00039 8.5E-09 68.2 -3.1 67 44-110 668-735 (881)
126 KOG0112|consensus 96.0 0.0023 5E-08 63.3 0.8 84 38-121 367-450 (975)
127 KOG2068|consensus 95.8 0.0032 6.9E-08 56.1 0.6 79 44-122 78-163 (327)
128 KOG2416|consensus 95.6 0.033 7.2E-07 53.1 6.5 77 41-122 442-522 (718)
129 KOG4676|consensus 95.5 0.03 6.4E-07 51.0 5.9 76 44-120 8-87 (479)
130 PF11767 SET_assoc: Histone ly 95.2 0.14 3E-06 35.3 7.0 55 54-116 11-65 (66)
131 PF03880 DbpA: DbpA RNA bindin 95.1 0.12 2.6E-06 36.1 6.8 67 45-119 2-74 (74)
132 PF04847 Calcipressin: Calcipr 94.8 0.089 1.9E-06 43.7 6.3 62 56-122 8-71 (184)
133 KOG2135|consensus 94.4 0.03 6.4E-07 52.1 2.8 75 42-122 371-446 (526)
134 PF07576 BRAP2: BRCA1-associat 94.3 0.51 1.1E-05 35.8 9.0 66 45-111 15-81 (110)
135 PF08675 RNA_bind: RNA binding 93.6 0.28 6.1E-06 35.3 5.9 54 45-105 10-63 (87)
136 KOG2591|consensus 93.4 0.64 1.4E-05 44.4 9.4 67 45-117 177-247 (684)
137 KOG4660|consensus 93.3 0.16 3.5E-06 48.1 5.5 81 43-123 361-474 (549)
138 KOG4574|consensus 93.2 0.27 5.8E-06 49.0 7.0 76 45-125 300-377 (1007)
139 KOG4285|consensus 93.2 0.42 9.2E-06 42.3 7.5 76 43-125 197-273 (350)
140 PF03467 Smg4_UPF3: Smg-4/UPF3 92.8 0.17 3.6E-06 41.7 4.3 80 42-121 6-97 (176)
141 KOG4210|consensus 91.5 0.094 2E-06 46.5 1.5 81 42-122 87-168 (285)
142 PF15023 DUF4523: Protein of u 91.2 0.66 1.4E-05 36.9 5.7 74 40-120 83-160 (166)
143 KOG2253|consensus 90.6 0.14 3.1E-06 49.5 1.8 69 43-119 40-108 (668)
144 KOG0804|consensus 86.0 2.4 5.1E-05 39.6 6.5 68 43-111 74-142 (493)
145 KOG2318|consensus 85.9 3.3 7.2E-05 39.9 7.5 79 40-118 171-304 (650)
146 KOG4454|consensus 85.3 0.19 4E-06 42.7 -0.8 77 36-112 73-153 (267)
147 KOG4410|consensus 82.7 4.3 9.4E-05 35.9 6.4 59 42-105 329-395 (396)
148 KOG4019|consensus 77.1 2.3 4.9E-05 35.1 2.7 78 42-124 9-92 (193)
149 PF07530 PRE_C2HC: Associated 69.9 9.9 0.00021 26.2 4.2 63 58-123 2-66 (68)
150 smart00596 PRE_C2HC PRE_C2HC d 68.9 9.3 0.0002 26.5 3.8 63 58-123 2-66 (69)
151 KOG4483|consensus 64.2 18 0.00039 33.6 5.7 55 43-103 391-446 (528)
152 PF10567 Nab6_mRNP_bdg: RNA-re 63.8 12 0.00026 33.2 4.4 81 40-120 12-106 (309)
153 KOG2236|consensus 63.0 14 0.00031 34.8 4.9 13 59-71 246-258 (483)
154 COG5638 Uncharacterized conser 59.0 38 0.00083 31.6 6.9 42 35-77 139-185 (622)
155 KOG2193|consensus 57.0 0.52 1.1E-05 43.6 -5.3 76 43-121 80-156 (584)
156 COG0724 RNA-binding proteins ( 53.9 17 0.00036 29.9 3.7 62 40-101 222-284 (306)
157 PF15513 DUF4651: Domain of un 51.3 39 0.00084 22.9 4.3 19 58-76 9-27 (62)
158 KOG4676|consensus 51.2 2.8 6E-05 38.6 -1.6 64 43-110 151-214 (479)
159 PRK11901 hypothetical protein; 49.9 33 0.00071 31.0 4.9 59 43-106 245-306 (327)
160 PF09707 Cas_Cas2CT1978: CRISP 48.2 40 0.00087 24.4 4.3 48 43-92 25-72 (86)
161 PF02714 DUF221: Domain of unk 47.8 23 0.00049 31.4 3.7 36 87-124 1-36 (325)
162 COG5193 LHP1 La protein, small 40.3 13 0.00028 34.4 0.9 63 40-102 171-244 (438)
163 PRK11558 putative ssRNA endonu 38.1 56 0.0012 24.2 3.8 49 43-93 27-75 (97)
164 PF03468 XS: XS domain; Inter 37.7 31 0.00067 26.3 2.5 37 55-93 29-65 (116)
165 KOG2891|consensus 36.1 44 0.00095 29.7 3.4 35 43-77 149-195 (445)
166 KOG4213|consensus 35.2 36 0.00079 28.2 2.6 57 42-103 110-169 (205)
167 PF07237 DUF1428: Protein of u 31.3 1.2E+02 0.0027 22.6 4.8 45 60-104 25-85 (103)
168 KOG0226|consensus 31.0 29 0.00064 30.3 1.5 76 43-118 96-174 (290)
169 PF07292 NID: Nmi/IFP 35 domai 30.8 30 0.00065 25.1 1.4 24 40-63 49-72 (88)
170 KOG4264|consensus 25.3 3E+02 0.0066 26.8 7.2 11 183-193 595-605 (694)
171 PRK10905 cell division protein 24.7 1.5E+02 0.0033 26.8 4.9 60 42-106 246-308 (328)
172 PRK11230 glycolate oxidase sub 24.6 2.8E+02 0.006 26.6 7.1 51 55-105 201-255 (499)
173 KOG2295|consensus 21.7 18 0.00039 34.9 -1.5 68 43-110 231-299 (648)
174 KOG1295|consensus 21.3 1.2E+02 0.0027 27.9 3.7 67 43-109 7-77 (376)
175 KOG0156|consensus 20.7 1.7E+02 0.0037 27.9 4.9 59 47-114 36-97 (489)
176 PRK10629 EnvZ/OmpR regulon mod 20.7 4E+02 0.0087 20.5 7.7 69 45-120 37-109 (127)
177 KOG4365|consensus 20.6 14 0.00031 34.6 -2.3 76 44-120 4-80 (572)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=4e-19 Score=141.77 Aligned_cols=84 Identities=27% Similarity=0.604 Sum_probs=79.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
..++|||+||+++++|++|+++|++||.|++++|+.|+ +++++|||||+|++.++|++|++.||+.+|+|++|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 45699999999999999999999999999999999998 89999999999999999999999999999999999999998
Q ss_pred cCCCC
Q psy15515 121 KKQGF 125 (242)
Q Consensus 121 ~~~~~ 125 (242)
.+...
T Consensus 113 ~~~~~ 117 (144)
T PLN03134 113 DRPSA 117 (144)
T ss_pred cCCCC
Confidence 76543
No 2
>KOG0125|consensus
Probab=99.75 E-value=6.8e-18 Score=146.75 Aligned_cols=86 Identities=24% Similarity=0.519 Sum_probs=79.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEE
Q psy15515 37 KYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNI 116 (242)
Q Consensus 37 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V 116 (242)
......+++|+|+|||+.+.|.||+.+|++||+|++|+|+.+..| +||||||+|++.++|++|-++|||..|.||+|+|
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 344566789999999999999999999999999999999998755 7999999999999999999999999999999999
Q ss_pred eecccCC
Q psy15515 117 APAIKKQ 123 (242)
Q Consensus 117 ~~a~~~~ 123 (242)
..|..+-
T Consensus 169 n~ATarV 175 (376)
T KOG0125|consen 169 NNATARV 175 (376)
T ss_pred eccchhh
Confidence 9998763
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.73 E-value=2.6e-17 Score=148.39 Aligned_cols=82 Identities=27% Similarity=0.415 Sum_probs=78.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
..+|||+||++++++++|+++|++||.|++++|++|. +|++||||||+|.+.++|.+||+.|||..|+||.|+|.|+..
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 4579999999999999999999999999999999999 999999999999999999999999999999999999999987
Q ss_pred CCC
Q psy15515 122 KQG 124 (242)
Q Consensus 122 ~~~ 124 (242)
+..
T Consensus 349 ~~~ 351 (352)
T TIGR01661 349 KAY 351 (352)
T ss_pred CCC
Confidence 753
No 4
>KOG0149|consensus
Probab=99.72 E-value=8.7e-18 Score=140.42 Aligned_cols=82 Identities=34% Similarity=0.598 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
+|..-++||||+|+|++..|+|++.|++||+|++..|+.|+ +|++||||||+|++.|.|++|++. .+-.|+||+..|.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 45666899999999999999999999999999999999999 999999999999999999999976 4478999999998
Q ss_pred eccc
Q psy15515 118 PAIK 121 (242)
Q Consensus 118 ~a~~ 121 (242)
+|.-
T Consensus 87 lA~l 90 (247)
T KOG0149|consen 87 LASL 90 (247)
T ss_pred hhhh
Confidence 8764
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=9.4e-17 Score=145.06 Aligned_cols=84 Identities=29% Similarity=0.456 Sum_probs=79.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
.+...++|||++|+++++|++|+++|++||.|++|+|+.|+ +++++|||||+|.++++|++||+.||+.+|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecccC
Q psy15515 118 PAIKK 122 (242)
Q Consensus 118 ~a~~~ 122 (242)
++++.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 98753
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.71 E-value=7.4e-17 Score=111.53 Aligned_cols=70 Identities=31% Similarity=0.705 Sum_probs=67.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEE
Q psy15515 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLN 115 (242)
Q Consensus 46 lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~ 115 (242)
|||+|||.++++++|+++|++||.|..+++..+.++..++||||+|.+.++|++|++.|+|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999987888999999999999999999999999999999986
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=6.9e-17 Score=145.61 Aligned_cols=81 Identities=25% Similarity=0.482 Sum_probs=77.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
.++|||+|||.+++|++|+++|++||.|.+|+|++|+ +|+++|||||+|.+.++|++||+.|||..|.|++|+|.++++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 4699999999999999999999999999999999998 899999999999999999999999999999999999999876
Q ss_pred CC
Q psy15515 122 KQ 123 (242)
Q Consensus 122 ~~ 123 (242)
..
T Consensus 83 ~~ 84 (352)
T TIGR01661 83 SS 84 (352)
T ss_pred cc
Confidence 54
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.70 E-value=4.2e-16 Score=149.27 Aligned_cols=84 Identities=32% Similarity=0.572 Sum_probs=79.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
....+|||+||++++++++|+++|++||.|++++++.|.+|+++|||||+|.+.++|++|++.||++.++|++|+|.+|.
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy15515 121 KKQG 124 (242)
Q Consensus 121 ~~~~ 124 (242)
.+..
T Consensus 363 ~k~~ 366 (562)
T TIGR01628 363 RKEQ 366 (562)
T ss_pred CcHH
Confidence 7753
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.68 E-value=8.6e-16 Score=138.83 Aligned_cols=86 Identities=24% Similarity=0.465 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCC--eEEEE
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKE--KRLNI 116 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G--~~l~V 116 (242)
+...++|||+||+++++|++|+++|++||.|++++|+.|+ +|++||||||+|++.++|++||+.||+..+.| ++|+|
T Consensus 190 ~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 190 SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 3456789999999999999999999999999999999998 99999999999999999999999999999876 78999
Q ss_pred eecccCCCC
Q psy15515 117 APAIKKQGF 125 (242)
Q Consensus 117 ~~a~~~~~~ 125 (242)
++++.....
T Consensus 270 ~~a~~~~~~ 278 (346)
T TIGR01659 270 RLAEEHGKA 278 (346)
T ss_pred EECCccccc
Confidence 999876543
No 10
>KOG0148|consensus
Probab=99.67 E-value=1.1e-15 Score=130.00 Aligned_cols=83 Identities=24% Similarity=0.392 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
..++++||||||...++|++|++.|+.||.|.+|+|.++ +||+||.|+++|.|.+||..+|+.+|+|+.++|.|.
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 557789999999999999999999999999999999998 499999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q psy15515 120 IKKQGFTG 127 (242)
Q Consensus 120 ~~~~~~~~ 127 (242)
+.......
T Consensus 236 Ke~~~~~~ 243 (321)
T KOG0148|consen 236 KEGDDGIN 243 (321)
T ss_pred ccCCCCCC
Confidence 98765443
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.64 E-value=1.2e-14 Score=138.70 Aligned_cols=82 Identities=15% Similarity=0.345 Sum_probs=77.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
..++|||+||+.++++++|+++|+.||.|++++|.+|+ +|++||||||+|++.++|.+||+.||+.+|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 34699999999999999999999999999999999998 88999999999999999999999999999999999999998
Q ss_pred cCC
Q psy15515 121 KKQ 123 (242)
Q Consensus 121 ~~~ 123 (242)
.+.
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 654
No 12
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.63 E-value=2.9e-15 Score=104.23 Aligned_cols=70 Identities=31% Similarity=0.665 Sum_probs=65.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEE
Q psy15515 46 VFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLN 115 (242)
Q Consensus 46 lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~ 115 (242)
|||+|||+++++++|.++|+.||.|..+++..+++|..+|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999988889999999999999999999999999999999985
No 13
>KOG0122|consensus
Probab=99.63 E-value=1.5e-15 Score=127.58 Aligned_cols=81 Identities=28% Similarity=0.483 Sum_probs=78.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
+..+|-|.||+.+++|++|+++|..||.|.++.|.+|+ +|.+||||||.|+++++|.+||+.|||+-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56689999999999999999999999999999999999 99999999999999999999999999999999999999998
Q ss_pred cC
Q psy15515 121 KK 122 (242)
Q Consensus 121 ~~ 122 (242)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.59 E-value=5.3e-15 Score=141.21 Aligned_cols=79 Identities=23% Similarity=0.477 Sum_probs=74.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
..++||||||++++++++|+++|++||.|.+|+|++|+ +|+++|||||+|.+.++|++|++.|||..|+|++|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 34699999999999999999999999999999999998 99999999999999999999999999999999999998644
No 15
>KOG4207|consensus
Probab=99.59 E-value=1.9e-15 Score=124.32 Aligned_cols=81 Identities=26% Similarity=0.404 Sum_probs=76.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
.-+.|-|.||.+.++.++|+.+|++||.|-+|.|.+|+ |+.++|||||.|++..+|+.|+++|+|.+|+|+.|+|.+|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 34689999999999999999999999999999999999 99999999999999999999999999999999999999876
Q ss_pred cC
Q psy15515 121 KK 122 (242)
Q Consensus 121 ~~ 122 (242)
-.
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 33
No 16
>KOG0148|consensus
Probab=99.58 E-value=4.5e-15 Score=126.38 Aligned_cols=81 Identities=28% Similarity=0.533 Sum_probs=78.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
...+|||.|..+++.++|++.|.+||+|.+++|++|. |+++||||||.|-++++|++||..|||..|++|.|+-.||.+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 4589999999999999999999999999999999999 999999999999999999999999999999999999999987
Q ss_pred CC
Q psy15515 122 KQ 123 (242)
Q Consensus 122 ~~ 123 (242)
+.
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 74
No 17
>KOG0107|consensus
Probab=99.58 E-value=1.2e-14 Score=116.72 Aligned_cols=80 Identities=23% Similarity=0.402 Sum_probs=73.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...++||||||+..+++.||+..|..||.+..|.|...+ .|||||+|++..+|+.|+..|||+.|.|..|+|+...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 346799999999999999999999999999999988764 7999999999999999999999999999999999887
Q ss_pred cCCC
Q psy15515 121 KKQG 124 (242)
Q Consensus 121 ~~~~ 124 (242)
-+..
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 5543
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.4e-14 Score=124.47 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=71.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccC
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKK 122 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~ 122 (242)
.++|||+||++.++|++|+++|+.||.|++|+|..+. ..+|||||+|++.++|+.|| .|+|..|.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccCC
Confidence 4699999999999999999999999999999999875 35799999999999999999 59999999999999997644
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.56 E-value=1.6e-14 Score=138.30 Aligned_cols=78 Identities=26% Similarity=0.476 Sum_probs=75.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccC
Q psy15515 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKK 122 (242)
Q Consensus 45 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~ 122 (242)
+||||||+.+++|++|+++|++||.|.+|+|.+|+ +++++|||||+|.+.++|++|++.|++..|+|+.|+|.|+...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 69999999999999999999999999999999999 7999999999999999999999999999999999999998644
No 20
>smart00362 RRM_2 RNA recognition motif.
Probab=99.55 E-value=4.7e-14 Score=96.39 Aligned_cols=72 Identities=36% Similarity=0.668 Sum_probs=67.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 45 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
+|||+||+.++++++|+++|..||.|.++++..++ +.++|+|||+|.+.++|++|++.+++..++|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998877 7788999999999999999999999999999999874
No 21
>KOG0111|consensus
Probab=99.54 E-value=5.2e-15 Score=122.79 Aligned_cols=83 Identities=22% Similarity=0.448 Sum_probs=79.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
+.++||||+|..+++|..|...|-.||.|.+|++..|. ++++||||||+|+..|+|.+||..||+.+|.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 46799999999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy15515 121 KKQG 124 (242)
Q Consensus 121 ~~~~ 124 (242)
+.+-
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 8754
No 22
>KOG0113|consensus
Probab=99.54 E-value=5.1e-14 Score=121.42 Aligned_cols=83 Identities=31% Similarity=0.551 Sum_probs=78.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
..-+||||+.|+.+++|..|+..|++||.|+.|.|++|+ +|+++|||||+|+++.+...|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 345799999999999999999999999999999999998 9999999999999999999999999999999999999887
Q ss_pred ccCC
Q psy15515 120 IKKQ 123 (242)
Q Consensus 120 ~~~~ 123 (242)
..+.
T Consensus 179 RgRT 182 (335)
T KOG0113|consen 179 RGRT 182 (335)
T ss_pred cccc
Confidence 6554
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.54 E-value=4.5e-14 Score=131.77 Aligned_cols=80 Identities=29% Similarity=0.510 Sum_probs=76.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
.++|||+||+..+++++|+++|+.||.|..|.++.+. +|+++|||||+|.+.++|.+|++.|||..|.|+.|+|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 5799999999999999999999999999999999998 789999999999999999999999999999999999999874
Q ss_pred C
Q psy15515 122 K 122 (242)
Q Consensus 122 ~ 122 (242)
.
T Consensus 266 ~ 266 (457)
T TIGR01622 266 S 266 (457)
T ss_pred C
Confidence 3
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.54 E-value=6.6e-14 Score=132.25 Aligned_cols=82 Identities=21% Similarity=0.387 Sum_probs=77.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...++|||+||+..+++++|+++|+.||.|..+.++.+. +|.++|||||+|.+.++|+.||+.|||..|+|++|+|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 345799999999999999999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred ccC
Q psy15515 120 IKK 122 (242)
Q Consensus 120 ~~~ 122 (242)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 754
No 25
>PLN03213 repressor of silencing 3; Provisional
Probab=99.53 E-value=3.4e-14 Score=129.58 Aligned_cols=79 Identities=25% Similarity=0.469 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCH--HHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSE--EEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~--e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
....+||||||.+.++++||+..|..||.|.+|.|+++ +| ||||||+|.+. .++++||..|||.++.|+.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34569999999999999999999999999999999944 56 89999999987 789999999999999999999999
Q ss_pred cccC
Q psy15515 119 AIKK 122 (242)
Q Consensus 119 a~~~ 122 (242)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9854
No 26
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.52 E-value=4.6e-14 Score=134.39 Aligned_cols=79 Identities=33% Similarity=0.527 Sum_probs=73.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeC-CeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFK-EKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~-G~~l~V~~a~ 120 (242)
..++|||+|||++++|++|+++|++||.|.+++|+.|.+|++||||||+|.+.++|++||+.||+.+|. |+.|.|.++.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 457999999999999999999999999999999999999999999999999999999999999999985 7777776553
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.52 E-value=1.5e-13 Score=130.85 Aligned_cols=75 Identities=24% Similarity=0.429 Sum_probs=69.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcC--CCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQY--GIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
.++|||+||+++++|++|+++|++| |.|++|++++ +||||+|++.++|++|++.||+.+|+|+.|+|.|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 4689999999999999999999999 9999998764 799999999999999999999999999999999998
Q ss_pred cCCC
Q psy15515 121 KKQG 124 (242)
Q Consensus 121 ~~~~ 124 (242)
++..
T Consensus 306 p~~~ 309 (578)
T TIGR01648 306 PVDK 309 (578)
T ss_pred CCCc
Confidence 7643
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.52 E-value=1.3e-13 Score=128.62 Aligned_cols=83 Identities=23% Similarity=0.345 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
+...++|||+||+..+++++|+++|++||.|.+|+|+.|+ +|+++|||||+|.+.++|++||. |+|..+.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3456799999999999999999999999999999999998 89999999999999999999995 899999999999998
Q ss_pred cccCC
Q psy15515 119 AIKKQ 123 (242)
Q Consensus 119 a~~~~ 123 (242)
+....
T Consensus 165 ~~~~~ 169 (457)
T TIGR01622 165 SQAEK 169 (457)
T ss_pred cchhh
Confidence 76543
No 29
>KOG0144|consensus
Probab=99.51 E-value=1.7e-14 Score=129.55 Aligned_cols=85 Identities=26% Similarity=0.449 Sum_probs=78.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCE-eCC--eEEEEee
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIM-FKE--KRLNIAP 118 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~-i~G--~~l~V~~ 118 (242)
++++||||.|++.++|.+++++|++||.|++|.|++|..|.+||||||.|.++|.|..||+.||+.. +.| .+|.|+|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 4679999999999999999999999999999999999999999999999999999999999999874 544 6899999
Q ss_pred cccCCCCC
Q psy15515 119 AIKKQGFT 126 (242)
Q Consensus 119 a~~~~~~~ 126 (242)
|.+++++.
T Consensus 203 ADtqkdk~ 210 (510)
T KOG0144|consen 203 ADTQKDKD 210 (510)
T ss_pred cccCCCch
Confidence 99887643
No 30
>KOG0145|consensus
Probab=99.50 E-value=6.4e-14 Score=118.92 Aligned_cols=84 Identities=24% Similarity=0.441 Sum_probs=79.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
+...++|.|.-||.+.|+++|+.+|+..|+|++|++++|+ +|++.|||||.|.++++|++|+..|||..+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 4456789999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cccCC
Q psy15515 119 AIKKQ 123 (242)
Q Consensus 119 a~~~~ 123 (242)
|++..
T Consensus 118 ARPSs 122 (360)
T KOG0145|consen 118 ARPSS 122 (360)
T ss_pred ccCCh
Confidence 99764
No 31
>KOG0117|consensus
Probab=99.50 E-value=7.8e-14 Score=125.81 Aligned_cols=80 Identities=33% Similarity=0.556 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeC-CeEEEEee
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFK-EKRLNIAP 118 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~-G~~l~V~~ 118 (242)
.....||||.||.++.|++|..+|++.|+|-+++++.|+ +|.+||||||+|.+.++|++||+.||+++|. |+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 345799999999999999999999999999999999998 9999999999999999999999999999985 88888875
Q ss_pred cc
Q psy15515 119 AI 120 (242)
Q Consensus 119 a~ 120 (242)
..
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 44
No 32
>smart00360 RRM RNA recognition motif.
Probab=99.50 E-value=1.7e-13 Score=93.15 Aligned_cols=70 Identities=36% Similarity=0.687 Sum_probs=66.2
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 48 VGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 48 VgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
|+||+.++++++|+++|+.||.|.++.+..++ +++++|+|||+|.+.++|.+|++.+++..++|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999888 78999999999999999999999999999999999874
No 33
>KOG0126|consensus
Probab=99.50 E-value=3.6e-15 Score=120.42 Aligned_cols=79 Identities=20% Similarity=0.487 Sum_probs=75.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
+..-|||||||++.||.||...|++||+|++|.+++|+ ||+++||||+.|++..+.--|+..|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 45689999999999999999999999999999999999 99999999999999999999999999999999999998654
No 34
>KOG0121|consensus
Probab=99.49 E-value=6.4e-14 Score=107.30 Aligned_cols=79 Identities=23% Similarity=0.420 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...+||||||+..++||.|.++|+++|.|..|.+-.|+ +....||+||+|.+.++|+.|++-+++..++.+.|+|.|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 45699999999999999999999999999999999998 77789999999999999999999999999999999999864
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.49 E-value=1.6e-13 Score=116.34 Aligned_cols=79 Identities=34% Similarity=0.642 Sum_probs=76.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
..+|||+||+.++++++|+++|.+||.|..+.+..++ +|+++|||||+|.+.+++..|++.+++..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999997 999999999999999999999999999999999999999653
No 36
>KOG0108|consensus
Probab=99.49 E-value=1.4e-13 Score=126.92 Aligned_cols=82 Identities=33% Similarity=0.577 Sum_probs=78.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccC
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKK 122 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~ 122 (242)
..|||||||++++|++|.++|+..|.|.+++++.|+ +|+.|||||++|.+.++++.|++.|||.+++|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 689999999999999999999999999999999999 9999999999999999999999999999999999999999877
Q ss_pred CCC
Q psy15515 123 QGF 125 (242)
Q Consensus 123 ~~~ 125 (242)
...
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 653
No 37
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.48 E-value=2.6e-13 Score=115.14 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
...+|||+||++.++|++|+++|+.||.|.+|+|++| ++.++||||+|++++.++.|+ .|+|..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 3469999999999999999999999999999999987 455689999999999999999 7999999999999987654
No 38
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.48 E-value=5.7e-13 Score=91.40 Aligned_cols=74 Identities=34% Similarity=0.621 Sum_probs=69.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 45 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
+|||+|||.++++++|+++|+.||.|..+.+..+..+..+|+|||+|.+.++|..|++.+++..++|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999887667789999999999999999999999999999999874
No 39
>KOG0117|consensus
Probab=99.47 E-value=7.4e-13 Score=119.56 Aligned_cols=98 Identities=21% Similarity=0.346 Sum_probs=82.7
Q ss_pred cccchhhhhcCCCCCCCCC-----CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHH
Q psy15515 23 AFFNYQAAVNNNAPKYGTV-----VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEA 97 (242)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~-----~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A 97 (242)
+..++...+.+..|+.+-. .-+.|||.||+.++|||.|+++|++||.|++|+.++ .||||+|.++++|
T Consensus 234 klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r-------DYaFVHf~eR~da 306 (506)
T KOG0117|consen 234 KLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR-------DYAFVHFAEREDA 306 (506)
T ss_pred eecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc-------ceeEEeecchHHH
Confidence 3445566666766665422 236899999999999999999999999999998876 4999999999999
Q ss_pred HHHHHHcCCCEeCCeEEEEeecccCCCCCC
Q psy15515 98 KRLQKDSDNIMFKEKRLNIAPAIKKQGFTG 127 (242)
Q Consensus 98 ~~Al~~l~~~~i~G~~l~V~~a~~~~~~~~ 127 (242)
.+|++.+|+++|+|..|+|.+|++..+.+.
T Consensus 307 vkAm~~~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 307 VKAMKETNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred HHHHHHhcCceecCceEEEEecCChhhhcc
Confidence 999999999999999999999998765443
No 40
>KOG0131|consensus
Probab=99.45 E-value=1.4e-13 Score=111.27 Aligned_cols=80 Identities=29% Similarity=0.441 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
+..+||||||+..++++.|+++|-+.|.|+++.+.+|+ +...+||||++|.++|+|+-|++.||...+.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 44599999999999999999999999999999999999 88999999999999999999999999999999999999988
Q ss_pred c
Q psy15515 121 K 121 (242)
Q Consensus 121 ~ 121 (242)
.
T Consensus 88 ~ 88 (203)
T KOG0131|consen 88 A 88 (203)
T ss_pred c
Confidence 3
No 41
>KOG0130|consensus
Probab=99.44 E-value=2e-13 Score=105.47 Aligned_cols=85 Identities=22% Similarity=0.450 Sum_probs=79.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
.....-|||.++....+|++|.+.|..||+|+.+.+..|+ +|..|||++|+|++.++|++|++.+||.+|.|.+|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 3455689999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cccCCC
Q psy15515 119 AIKKQG 124 (242)
Q Consensus 119 a~~~~~ 124 (242)
+.-+..
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 876543
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.43 E-value=9.6e-13 Score=124.11 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITS-TTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...++|||+||++ .+++++|+++|+.||.|.+|+|+.++ +|||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 3457999999998 69999999999999999999999874 699999999999999999999999999999999998
Q ss_pred ccCC
Q psy15515 120 IKKQ 123 (242)
Q Consensus 120 ~~~~ 123 (242)
+.+.
T Consensus 349 ~~~~ 352 (481)
T TIGR01649 349 KQQN 352 (481)
T ss_pred cccc
Confidence 7653
No 43
>KOG0144|consensus
Probab=99.42 E-value=8.8e-13 Score=118.65 Aligned_cols=85 Identities=27% Similarity=0.451 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCE-eC--CeEEE
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIM-FK--EKRLN 115 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~-i~--G~~l~ 115 (242)
|.+.-++|||.||...+|+||+++|++||.|.+|.|++|+ ++.++|||||.|.++++|.+|+..||+.. |- ...|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 4455689999999999999999999999999999999999 99999999999999999999999998764 44 46788
Q ss_pred EeecccCCC
Q psy15515 116 IAPAIKKQG 124 (242)
Q Consensus 116 V~~a~~~~~ 124 (242)
|++|...+.
T Consensus 111 vk~Ad~E~e 119 (510)
T KOG0144|consen 111 VKYADGERE 119 (510)
T ss_pred ecccchhhh
Confidence 998876543
No 44
>smart00361 RRM_1 RNA recognition motif.
Probab=99.37 E-value=3.1e-12 Score=89.50 Aligned_cols=61 Identities=25% Similarity=0.473 Sum_probs=55.4
Q ss_pred HHHHHHHhh----cCCCeEEEE-EeeCC-C--CCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 57 EDELCELFS----QYGIVKQVK-IVVDR-A--GISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 57 e~~L~~~F~----~~G~i~~v~-i~~~~-~--g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
+++|+++|+ +||.|.++. +..++ + +.++|||||+|.+.++|.+|++.|||..++|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678999998 999999995 76666 5 8999999999999999999999999999999999873
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.37 E-value=2.7e-12 Score=121.10 Aligned_cols=75 Identities=20% Similarity=0.254 Sum_probs=68.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHc--CCCEeCCeEEEEeecc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDS--DNIMFKEKRLNIAPAI 120 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l--~~~~i~G~~l~V~~a~ 120 (242)
.+.|||+|||++++|++|+++|+.||.|.+|+++.+ |+||||+|++.++|++|++.+ ++..|+|+.|+|.|+.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 468999999999999999999999999999999864 589999999999999999864 7889999999999987
Q ss_pred cC
Q psy15515 121 KK 122 (242)
Q Consensus 121 ~~ 122 (242)
.+
T Consensus 77 ~~ 78 (481)
T TIGR01649 77 SQ 78 (481)
T ss_pred Cc
Confidence 54
No 46
>KOG0114|consensus
Probab=99.37 E-value=4.1e-12 Score=94.07 Aligned_cols=82 Identities=17% Similarity=0.354 Sum_probs=73.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
.....+-|||.|||+.+|.++..++|++||.|..|+|-.++ ..+|-|||.|++..+|.+|++.|+|..+.++.|.|-+
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 34567789999999999999999999999999999997665 3479999999999999999999999999999999988
Q ss_pred cccC
Q psy15515 119 AIKK 122 (242)
Q Consensus 119 a~~~ 122 (242)
-...
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 6654
No 47
>KOG0109|consensus
Probab=99.37 E-value=1.1e-12 Score=113.05 Aligned_cols=73 Identities=27% Similarity=0.532 Sum_probs=69.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccCC
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQ 123 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~~ 123 (242)
.+|||||||..+++.+|+.+|++||+|++|.|++ .||||..++...++.||..||++.|+|..|+|+.++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK-------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK-------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec-------ccceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 4799999999999999999999999999999986 599999999999999999999999999999999988773
No 48
>KOG0127|consensus
Probab=99.36 E-value=3.1e-12 Score=118.06 Aligned_cols=84 Identities=17% Similarity=0.345 Sum_probs=79.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccC
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKK 122 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~ 122 (242)
..+|.|.||||.+.+.+|+.+|+.||.|.+|.|++...|+-.|||||.|....+|+.|++.+|+.+|+||+|-|.||..+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 67999999999999999999999999999999998778888899999999999999999999999999999999999988
Q ss_pred CCCC
Q psy15515 123 QGFT 126 (242)
Q Consensus 123 ~~~~ 126 (242)
....
T Consensus 197 d~ye 200 (678)
T KOG0127|consen 197 DTYE 200 (678)
T ss_pred cccc
Confidence 6543
No 49
>KOG0145|consensus
Probab=99.35 E-value=6e-12 Score=107.03 Aligned_cols=83 Identities=24% Similarity=0.375 Sum_probs=77.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
+.....|||-||..+.+|..|+++|+.||.|..++|++|. +.+.||||||.+.+-++|..||..|||+.+++|.|.|.+
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 4456799999999999999999999999999999999999 799999999999999999999999999999999999998
Q ss_pred cccC
Q psy15515 119 AIKK 122 (242)
Q Consensus 119 a~~~ 122 (242)
...+
T Consensus 355 Ktnk 358 (360)
T KOG0145|consen 355 KTNK 358 (360)
T ss_pred ecCC
Confidence 6654
No 50
>KOG0105|consensus
Probab=99.33 E-value=4e-12 Score=103.23 Aligned_cols=80 Identities=19% Similarity=0.409 Sum_probs=71.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
...+|||||||.++.|.+|+++|.+||.|.+|.+.... ....||||+|++..+|+.||..-+|+.++|.+|+|+++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 35689999999999999999999999999999875432 2357999999999999999999999999999999999886
Q ss_pred CC
Q psy15515 122 KQ 123 (242)
Q Consensus 122 ~~ 123 (242)
..
T Consensus 83 gr 84 (241)
T KOG0105|consen 83 GR 84 (241)
T ss_pred CC
Confidence 54
No 51
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.33 E-value=9.6e-12 Score=82.98 Aligned_cols=56 Identities=32% Similarity=0.634 Sum_probs=51.1
Q ss_pred HHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 60 LCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 60 L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
|.++|++||.|.++.+..++ +++|||+|.+.++|+.|++.||+..++|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997753 599999999999999999999999999999999986
No 52
>KOG0124|consensus
Probab=99.30 E-value=1.8e-12 Score=114.70 Aligned_cols=76 Identities=24% Similarity=0.500 Sum_probs=73.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
.+||||.|.+++.|+.|+..|..||.|+++.+-+|. ++++|||+||+|+-.|.|..|++.|||..++||.|+|...
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 489999999999999999999999999999999999 9999999999999999999999999999999999999853
No 53
>KOG0123|consensus
Probab=99.29 E-value=1e-11 Score=113.09 Aligned_cols=84 Identities=27% Similarity=0.531 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
.++..|||.||+.+++..+|.++|+.||.|++|++.++.+| ++|| ||+|+++++|++|++.|||..+.|++|.|....
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 34445999999999999999999999999999999999988 9999 999999999999999999999999999999888
Q ss_pred cCCCCC
Q psy15515 121 KKQGFT 126 (242)
Q Consensus 121 ~~~~~~ 126 (242)
.+..+.
T Consensus 152 ~~~er~ 157 (369)
T KOG0123|consen 152 RKEERE 157 (369)
T ss_pred chhhhc
Confidence 776544
No 54
>KOG0131|consensus
Probab=99.29 E-value=7.3e-12 Score=101.39 Aligned_cols=87 Identities=26% Similarity=0.426 Sum_probs=79.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEE-EEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQ-VKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~-v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
.....+|||+||.++++|..|.+.|+.||.+.. -+++++. +|.++|||||.|.+.|.+++|++.|||..+..+++.|.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 334569999999999999999999999998866 4889998 89999999999999999999999999999999999999
Q ss_pred ecccCCCCC
Q psy15515 118 PAIKKQGFT 126 (242)
Q Consensus 118 ~a~~~~~~~ 126 (242)
++.++....
T Consensus 173 ya~k~~~kg 181 (203)
T KOG0131|consen 173 YAFKKDTKG 181 (203)
T ss_pred EEEecCCCc
Confidence 999886554
No 55
>KOG0146|consensus
Probab=99.28 E-value=4e-12 Score=108.49 Aligned_cols=85 Identities=24% Similarity=0.389 Sum_probs=80.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
..+..+|||-.||.++.+.+|..+|-.||.|.+.++..|+ |..+|+||||.|.+..+++.||..|||..|+-++|+|..
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 3466799999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cccCCC
Q psy15515 119 AIKKQG 124 (242)
Q Consensus 119 a~~~~~ 124 (242)
.++++.
T Consensus 362 KRPkda 367 (371)
T KOG0146|consen 362 KRPKDA 367 (371)
T ss_pred cCcccc
Confidence 888764
No 56
>KOG0147|consensus
Probab=99.28 E-value=5.4e-12 Score=116.56 Aligned_cols=79 Identities=28% Similarity=0.577 Sum_probs=74.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccCC
Q psy15515 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQ 123 (242)
Q Consensus 45 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~~ 123 (242)
+||||||.++++|++|+.+|+.||.|+.|.+..|. +|.++|||||+|.+.++|.+|++.|||.+|-|+.|+|..-..+.
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 49999999999999999999999999999999998 99999999999999999999999999999999999998766553
No 57
>KOG4212|consensus
Probab=99.28 E-value=1.1e-11 Score=111.91 Aligned_cols=79 Identities=18% Similarity=0.344 Sum_probs=74.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhh-cCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFS-QYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
.+.+||.|||+++.+.||+++|. +.|+|+.|.+..|..|++||+|.|+|+++|.+++|++.||.++++||.|+|+....
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 45699999999999999999995 67999999999999999999999999999999999999999999999999987654
No 58
>KOG0415|consensus
Probab=99.26 E-value=1.2e-11 Score=109.10 Aligned_cols=84 Identities=24% Similarity=0.467 Sum_probs=78.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
....-|||..|.+-++++||+-+|+.||.|..|.|++|. +|.+..||||+|++.+++++|.-.|++..|+.++|.|.+.
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 345689999999999999999999999999999999999 9999999999999999999999999999999999999988
Q ss_pred ccCCC
Q psy15515 120 IKKQG 124 (242)
Q Consensus 120 ~~~~~ 124 (242)
+.-..
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 75543
No 59
>KOG0127|consensus
Probab=99.25 E-value=3.5e-11 Score=111.19 Aligned_cols=84 Identities=33% Similarity=0.522 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHc-----CC-CEeCCeE
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDS-----DN-IMFKEKR 113 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l-----~~-~~i~G~~ 113 (242)
...++|||.||++++++++|.+.|++||.|..+.|+.++ ||.++|.|||.|.+...|..||+.. .| ..|+||.
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 345799999999999999999999999999999999999 9999999999999999999999876 23 6789999
Q ss_pred EEEeecccCCC
Q psy15515 114 LNIAPAIKKQG 124 (242)
Q Consensus 114 l~V~~a~~~~~ 124 (242)
|+|..|..+..
T Consensus 370 Lkv~~Av~Rke 380 (678)
T KOG0127|consen 370 LKVTLAVTRKE 380 (678)
T ss_pred EeeeeccchHH
Confidence 99999987753
No 60
>KOG0132|consensus
Probab=99.23 E-value=4e-10 Score=107.74 Aligned_cols=75 Identities=27% Similarity=0.565 Sum_probs=71.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccC
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKK 122 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~ 122 (242)
.+|||||+|+.+++|.||..+|+.||+|.+|.++.. +|+|||....+.+|++|+.+|.++.+.++.|+|.||..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 479999999999999999999999999999999874 799999999999999999999999999999999999865
No 61
>KOG4208|consensus
Probab=99.23 E-value=7.2e-11 Score=97.36 Aligned_cols=83 Identities=29% Similarity=0.450 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcC-CCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQY-GIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~-G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
+....-+||+.++..+.+.+|..+|.+| |.|..+++.+++ ||.+||||||+|++.+.|+.|.+.||++.+.|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 4455689999999999999999999998 778888888888 99999999999999999999999999999999999998
Q ss_pred ecccC
Q psy15515 118 PAIKK 122 (242)
Q Consensus 118 ~a~~~ 122 (242)
+--+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 76555
No 62
>KOG4205|consensus
Probab=99.18 E-value=2.2e-11 Score=108.05 Aligned_cols=82 Identities=28% Similarity=0.548 Sum_probs=75.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
+..+||||+|+|+++++.|++.|.+||+|.+|.+++|+ +++++||+||+|++.+...+++.. ..+.|+|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 56799999999999999999999999999999999999 999999999999999999988854 5678999999999998
Q ss_pred cCCC
Q psy15515 121 KKQG 124 (242)
Q Consensus 121 ~~~~ 124 (242)
++..
T Consensus 84 ~r~~ 87 (311)
T KOG4205|consen 84 SRED 87 (311)
T ss_pred Cccc
Confidence 8764
No 63
>KOG0146|consensus
Probab=99.17 E-value=4.1e-11 Score=102.36 Aligned_cols=84 Identities=23% Similarity=0.381 Sum_probs=76.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCE-eC--CeEEEEee
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIM-FK--EKRLNIAP 118 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~-i~--G~~l~V~~ 118 (242)
+.++||||.|.+.-.|||++.+|..||.|++|.+.+..+|.+||++||.|.+..+|+.||..|||.. +- ...|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 6789999999999999999999999999999999999999999999999999999999999999864 33 35789999
Q ss_pred cccCCCC
Q psy15515 119 AIKKQGF 125 (242)
Q Consensus 119 a~~~~~~ 125 (242)
++..+++
T Consensus 98 ADTdkER 104 (371)
T KOG0146|consen 98 ADTDKER 104 (371)
T ss_pred ccchHHH
Confidence 9877653
No 64
>KOG0153|consensus
Probab=99.13 E-value=2.3e-10 Score=100.77 Aligned_cols=79 Identities=27% Similarity=0.530 Sum_probs=71.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHc-CCCEeCCeEEEEe
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDS-DNIMFKEKRLNIA 117 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l-~~~~i~G~~l~V~ 117 (242)
.|...++|||++|-..++|.||+++|.+||+|.++.+... +++|||+|.+++.|+.|.++. +...|+|++|+|.
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 4667789999999999999999999999999999999875 589999999999999998874 6667899999999
Q ss_pred ecccC
Q psy15515 118 PAIKK 122 (242)
Q Consensus 118 ~a~~~ 122 (242)
|+.+.
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 99983
No 65
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.12 E-value=4.4e-10 Score=106.29 Aligned_cols=76 Identities=28% Similarity=0.472 Sum_probs=63.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcC------------CCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQY------------GIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDN 106 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~------------G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~ 106 (242)
.+...++|||||||+++++++|+++|.++ +.|..+.+ ++.+|||||+|.+.++|..|| .|+|
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----~~~kg~afVeF~~~e~A~~Al-~l~g 244 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----NKEKNFAFLEFRTVEEATFAM-ALDS 244 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----CCCCCEEEEEeCCHHHHhhhh-cCCC
Confidence 35567899999999999999999999975 23344444 335799999999999999999 6999
Q ss_pred CEeCCeEEEEeecc
Q psy15515 107 IMFKEKRLNIAPAI 120 (242)
Q Consensus 107 ~~i~G~~l~V~~a~ 120 (242)
..|.|+.|+|....
T Consensus 245 ~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 245 IIYSNVFLKIRRPH 258 (509)
T ss_pred eEeeCceeEecCcc
Confidence 99999999997554
No 66
>KOG0124|consensus
Probab=99.12 E-value=1.4e-10 Score=102.90 Aligned_cols=80 Identities=15% Similarity=0.377 Sum_probs=75.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccC
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKK 122 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~ 122 (242)
.+|||..+..+.+|+||+..|+.||+|+.|++.++. .+.+|||||++|.+..+...||..||-..++|+.|+|..+...
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 499999999999999999999999999999999999 6779999999999999999999999999999999999988766
Q ss_pred C
Q psy15515 123 Q 123 (242)
Q Consensus 123 ~ 123 (242)
.
T Consensus 291 P 291 (544)
T KOG0124|consen 291 P 291 (544)
T ss_pred C
Confidence 4
No 67
>KOG0109|consensus
Probab=99.10 E-value=1.3e-10 Score=100.20 Aligned_cols=80 Identities=31% Similarity=0.514 Sum_probs=73.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEE
Q psy15515 37 KYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNI 116 (242)
Q Consensus 37 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V 116 (242)
+..+...++|+||||.+.++..+|+..|++||.|.+|+|++ +|+||.|+-.++|..|++.||+.++.|++++|
T Consensus 72 ksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk-------dy~fvh~d~~eda~~air~l~~~~~~gk~m~v 144 (346)
T KOG0109|consen 72 KSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK-------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHV 144 (346)
T ss_pred cccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeec-------ceeEEEEeeccchHHHHhcccccccccceeee
Confidence 33355678999999999999999999999999999999986 69999999999999999999999999999999
Q ss_pred eecccCC
Q psy15515 117 APAIKKQ 123 (242)
Q Consensus 117 ~~a~~~~ 123 (242)
.....+-
T Consensus 145 q~stsrl 151 (346)
T KOG0109|consen 145 QLSTSRL 151 (346)
T ss_pred eeecccc
Confidence 9887664
No 68
>KOG4661|consensus
Probab=99.09 E-value=6e-10 Score=103.56 Aligned_cols=82 Identities=26% Similarity=0.473 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
.-.++|||.+|...+...||+.+|++||+|+-.+|+++. +--.++||||++.+.++|.++|+.||.++|.|+.|-|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 346799999999999999999999999999999999987 6667899999999999999999999999999999999998
Q ss_pred ccC
Q psy15515 120 IKK 122 (242)
Q Consensus 120 ~~~ 122 (242)
+..
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 755
No 69
>KOG4205|consensus
Probab=99.02 E-value=4.3e-10 Score=99.86 Aligned_cols=83 Identities=34% Similarity=0.658 Sum_probs=76.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
.++||||+|+.+++++++++.|++||.|.++.++.|. +.+.+|||||.|.+++.+++++. ..-++|+|+.++|..|.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 4599999999999999999999999999999999999 89999999999999999999984 477899999999999998
Q ss_pred CCCCC
Q psy15515 122 KQGFT 126 (242)
Q Consensus 122 ~~~~~ 126 (242)
+....
T Consensus 176 k~~~~ 180 (311)
T KOG4205|consen 176 KEVMQ 180 (311)
T ss_pred hhhcc
Confidence 86543
No 70
>KOG4206|consensus
Probab=99.02 E-value=8.6e-10 Score=92.25 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=72.8
Q ss_pred EEEEcCCCCCCCHHHHHH----HhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 45 RVFVGGITSTTTEDELCE----LFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 45 ~lfVgnLp~~~te~~L~~----~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
+|||.||...+..++|+. +|++||+|++|.... +.+.||-|||.|.+.+.|-.|++.|+|..+.|+.++|.||+
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 999999999999998888 999999999987754 67889999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy15515 121 KKQGF 125 (242)
Q Consensus 121 ~~~~~ 125 (242)
.+...
T Consensus 89 s~sdi 93 (221)
T KOG4206|consen 89 SDSDI 93 (221)
T ss_pred Cccch
Confidence 88643
No 71
>KOG0110|consensus
Probab=98.99 E-value=1.3e-09 Score=103.52 Aligned_cols=78 Identities=26% Similarity=0.442 Sum_probs=71.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCC----cccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGI----SKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~----skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
.++|||.||.++++.++|+..|.++|.|+++.|...+++. +.|||||+|.+.++|++|++.|+|+.|+|+.|.|++
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 3459999999999999999999999999999988766443 459999999999999999999999999999999999
Q ss_pred cc
Q psy15515 119 AI 120 (242)
Q Consensus 119 a~ 120 (242)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 88
No 72
>KOG0123|consensus
Probab=98.96 E-value=2.1e-09 Score=98.06 Aligned_cols=75 Identities=25% Similarity=0.415 Sum_probs=71.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccCCC
Q psy15515 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQG 124 (242)
Q Consensus 45 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~~~ 124 (242)
.|||| .+++|.+|.++|+.+|.|+++++.+|. + +.|||||.|.+.++|++|++.||...+.|++|+|.|..+...
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 58999 899999999999999999999999998 6 999999999999999999999999999999999999887643
No 73
>KOG4849|consensus
Probab=98.93 E-value=1.3e-08 Score=89.88 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=67.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCC--CeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEE
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYG--IVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNI 116 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G--~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V 116 (242)
+.....+|||||-|++|++||.+.+...| .+.++++..++ +|++||||+|...+....++.++.|..++|.|+.-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 44455899999999999999999888776 56788888888 8999999999999999999999999999999986555
Q ss_pred e
Q psy15515 117 A 117 (242)
Q Consensus 117 ~ 117 (242)
-
T Consensus 157 ~ 157 (498)
T KOG4849|consen 157 L 157 (498)
T ss_pred e
Confidence 4
No 74
>KOG0533|consensus
Probab=98.92 E-value=4.5e-09 Score=90.14 Aligned_cols=85 Identities=24% Similarity=0.395 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
+..+.+|+|.||+..++++||+++|..||.++.+-+..++.|.+.|.|-|.|...++|++|++.+++..++|+.+++...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 44457899999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred ccCCC
Q psy15515 120 IKKQG 124 (242)
Q Consensus 120 ~~~~~ 124 (242)
.....
T Consensus 160 ~~~~~ 164 (243)
T KOG0533|consen 160 SSPSQ 164 (243)
T ss_pred cCccc
Confidence 65543
No 75
>KOG0226|consensus
Probab=98.92 E-value=9.2e-10 Score=93.45 Aligned_cols=83 Identities=22% Similarity=0.454 Sum_probs=76.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
+.+..+||.|.|..+++++.|-..|.+|-.....++++|+ +|+++|||||.|.+..++.+|+.+|+|+.++.+.|+++.
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 4456799999999999999999999999988889999999 999999999999999999999999999999999998876
Q ss_pred cccC
Q psy15515 119 AIKK 122 (242)
Q Consensus 119 a~~~ 122 (242)
..-+
T Consensus 267 S~wk 270 (290)
T KOG0226|consen 267 SEWK 270 (290)
T ss_pred hhHH
Confidence 5433
No 76
>KOG0116|consensus
Probab=98.91 E-value=1.6e-08 Score=93.02 Aligned_cols=80 Identities=23% Similarity=0.397 Sum_probs=69.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
..+|||.|||.++++++|+++|..||.|+...|.... .++..+||||+|++.++++.||++ +-..|++++|.|+..+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 3469999999999999999999999999998887655 566669999999999999999976 57889999999998776
Q ss_pred CC
Q psy15515 122 KQ 123 (242)
Q Consensus 122 ~~ 123 (242)
..
T Consensus 367 ~~ 368 (419)
T KOG0116|consen 367 GF 368 (419)
T ss_pred cc
Confidence 53
No 77
>KOG0151|consensus
Probab=98.89 E-value=1.1e-08 Score=97.37 Aligned_cols=85 Identities=22% Similarity=0.409 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCC----CCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEE
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA----GISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRL 114 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~----g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l 114 (242)
||...++|||+||+..++++.|...|+.||.|..++|++.++ .+-+-+|||.|-++.++++|++.|+|..+.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 567788999999999999999999999999999999998762 4457799999999999999999999999999999
Q ss_pred EEeecccCC
Q psy15515 115 NIAPAIKKQ 123 (242)
Q Consensus 115 ~V~~a~~~~ 123 (242)
++.|++.-.
T Consensus 250 K~gWgk~V~ 258 (877)
T KOG0151|consen 250 KLGWGKAVP 258 (877)
T ss_pred eeccccccc
Confidence 999987654
No 78
>KOG4212|consensus
Probab=98.89 E-value=3.6e-09 Score=95.83 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=67.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...+|||.|||.++|+..|++-|..||.|+.+.|+. +|+++| .|.|.++++|++|+..|++..++||.|+|.+.
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime--~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME--NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhc--cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 346899999999999999999999999999998854 577777 89999999999999999999999999999874
No 79
>KOG1548|consensus
Probab=98.88 E-value=7.5e-09 Score=91.31 Aligned_cols=83 Identities=28% Similarity=0.364 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeE--------EEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCC
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVK--------QVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKE 111 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G 111 (242)
...++.|||.|||.++|.+++.++|+++|.|. .|++.++..|+-||=|++.|...++++.|++.|++..+.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 45667899999999999999999999999875 4889999999999999999999999999999999999999
Q ss_pred eEEEEeecccC
Q psy15515 112 KRLNIAPAIKK 122 (242)
Q Consensus 112 ~~l~V~~a~~~ 122 (242)
+.|+|..|+-.
T Consensus 211 ~~~rVerAkfq 221 (382)
T KOG1548|consen 211 KKLRVERAKFQ 221 (382)
T ss_pred cEEEEehhhhh
Confidence 99999988743
No 80
>KOG0110|consensus
Probab=98.88 E-value=1.4e-09 Score=103.26 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=75.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
.++|+|.|||+..+-.+++.+|..||.+.+|+|.... .+.++|||||+|-+..+|.+|++.|.++.+.||+|.++||+.
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 4699999999999999999999999999999998875 677899999999999999999999999999999999999986
Q ss_pred CC
Q psy15515 122 KQ 123 (242)
Q Consensus 122 ~~ 123 (242)
..
T Consensus 693 d~ 694 (725)
T KOG0110|consen 693 DN 694 (725)
T ss_pred ch
Confidence 64
No 81
>KOG0106|consensus
Probab=98.84 E-value=2.9e-09 Score=89.60 Aligned_cols=73 Identities=25% Similarity=0.492 Sum_probs=67.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccCC
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQ 123 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~~ 123 (242)
.++|||+|++.+.+.||+.+|..||.+.++.+.. ||+||+|.+..+|+.|+..||+++|.|.++.|+++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN-------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec-------ccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 3699999999999999999999999999998854 899999999999999999999999999999999988654
No 82
>KOG1457|consensus
Probab=98.82 E-value=1.2e-07 Score=79.38 Aligned_cols=89 Identities=18% Similarity=0.256 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEe-eCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeC---CeEEEE
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIV-VDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFK---EKRLNI 116 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~-~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~---G~~l~V 116 (242)
.-++|||.+||.++.-.+|..+|..|-.-+.+.+. +++ ....+-+|||+|.+..+|.+|+..|||..|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 46799999999999999999999998555555443 333 3345689999999999999999999999987 788999
Q ss_pred eecccCCCCCCCCC
Q psy15515 117 APAIKKQGFTGTYD 130 (242)
Q Consensus 117 ~~a~~~~~~~~~~~ 130 (242)
++|+...++.+...
T Consensus 113 ElAKSNtK~kr~k~ 126 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKG 126 (284)
T ss_pred eehhcCcccccCCC
Confidence 99987766554433
No 83
>KOG4209|consensus
Probab=98.78 E-value=1.5e-08 Score=86.80 Aligned_cols=83 Identities=20% Similarity=0.300 Sum_probs=77.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
.+.+.+.+||||+...++.++++..|+.||.|..+.|..|+ .|..|||+||+|.+.+.++.++. ||+..|.|+.++|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 46678899999999999999999999999999999999999 77899999999999999999997 99999999999999
Q ss_pred ecccC
Q psy15515 118 PAIKK 122 (242)
Q Consensus 118 ~a~~~ 122 (242)
+.+.+
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 88766
No 84
>KOG4454|consensus
Probab=98.68 E-value=8.5e-09 Score=85.98 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
..++|||+|+...++|+.|.++|-+-|.|.++.|..+++++.| ||||+|+++....-|++.+||..+.++.+.|.+-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 4569999999999999999999999999999999998888888 99999999999999999999999999998887644
No 85
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.61 E-value=3.3e-07 Score=68.05 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=68.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcC--CCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeC----CeEEEE
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQY--GIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFK----EKRLNI 116 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~--G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~----G~~l~V 116 (242)
++|.|.|||...+.++|.+++... |....+.++.|- ++.+.|||||.|.+.+.|.+..+.++|+.+. .+.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999888653 677888888887 8889999999999999999999999998875 556788
Q ss_pred eecccC
Q psy15515 117 APAIKK 122 (242)
Q Consensus 117 ~~a~~~ 122 (242)
.+|+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887643
No 86
>KOG4660|consensus
Probab=98.58 E-value=3.9e-08 Score=91.44 Aligned_cols=78 Identities=19% Similarity=0.377 Sum_probs=68.6
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeE
Q psy15515 34 NAPKYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKR 113 (242)
Q Consensus 34 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~ 113 (242)
..|...+-..++|+|-||+..+++++|+.+|+.||+|.+++.-.. .+|..||+|.|..+|++|+++|++.+|.|++
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 344445666789999999999999999999999999999765444 4789999999999999999999999999999
Q ss_pred EE
Q psy15515 114 LN 115 (242)
Q Consensus 114 l~ 115 (242)
|+
T Consensus 142 ~k 143 (549)
T KOG4660|consen 142 IK 143 (549)
T ss_pred hc
Confidence 88
No 87
>KOG4211|consensus
Probab=98.45 E-value=7.3e-07 Score=82.08 Aligned_cols=77 Identities=23% Similarity=0.403 Sum_probs=65.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccCC
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQ 123 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~~ 123 (242)
.-|-+.+|||++|++||.+||+.++ |+++.+.+. +|+..|-|||+|+++|++++|+++ |...+..|-|+|-.+....
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~-~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR-NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc-CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCcc
Confidence 3566789999999999999999995 677555442 799999999999999999999965 8888999999999876554
No 88
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.44 E-value=1.1e-06 Score=63.01 Aligned_cols=72 Identities=21% Similarity=0.294 Sum_probs=49.0
Q ss_pred cEEEEcCCCCCCCHH----HHHHHhhcCC-CeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 44 KRVFVGGITSTTTED----ELCELFSQYG-IVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 44 ~~lfVgnLp~~~te~----~L~~~F~~~G-~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
..|||.|||.+.+.. -|+.++..+| +|.+| +.+-|+|.|.+.+.|++|.+.|+|..+.|++|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 469999999998875 4566777886 56555 247899999999999999999999999999999999
Q ss_pred cccCCC
Q psy15515 119 AIKKQG 124 (242)
Q Consensus 119 a~~~~~ 124 (242)
......
T Consensus 74 ~~~~r~ 79 (90)
T PF11608_consen 74 SPKNRE 79 (90)
T ss_dssp S--S--
T ss_pred cCCccc
Confidence 865544
No 89
>KOG1995|consensus
Probab=98.22 E-value=1.8e-06 Score=76.85 Aligned_cols=87 Identities=22% Similarity=0.385 Sum_probs=78.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeE--------EEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeC
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVK--------QVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFK 110 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~ 110 (242)
.....+|||-+|+..+++++|.++|.++|.|. .|.|.+|+ |++.||-|.|.|++...|+.|++.++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34556899999999999999999999999874 46677888 9999999999999999999999999999999
Q ss_pred CeEEEEeecccCCCCC
Q psy15515 111 EKRLNIAPAIKKQGFT 126 (242)
Q Consensus 111 G~~l~V~~a~~~~~~~ 126 (242)
|..|+|..|..+....
T Consensus 143 gn~ikvs~a~~r~~ve 158 (351)
T KOG1995|consen 143 GNTIKVSLAERRTGVE 158 (351)
T ss_pred CCCchhhhhhhccCcc
Confidence 9999999999887543
No 90
>KOG1190|consensus
Probab=98.21 E-value=4e-05 Score=69.44 Aligned_cols=77 Identities=22% Similarity=0.355 Sum_probs=69.7
Q ss_pred CcEEEEcCCC-CCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 43 PKRVFVGGIT-STTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 43 ~~~lfVgnLp-~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
...|.|.||. ..+|.+.|..+|+.||.|.+|+|..++ +.-|+|.|.+...|+-|++.|+|..+.|++|+|.+.+.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 4578888885 678999999999999999999999875 47899999999999999999999999999999999885
Q ss_pred CC
Q psy15515 122 KQ 123 (242)
Q Consensus 122 ~~ 123 (242)
..
T Consensus 373 ~~ 374 (492)
T KOG1190|consen 373 TN 374 (492)
T ss_pred cc
Confidence 54
No 91
>KOG4211|consensus
Probab=98.15 E-value=4.5e-06 Score=76.97 Aligned_cols=79 Identities=20% Similarity=0.355 Sum_probs=66.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEE-EEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQ-VKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
...|-+.+||+.|+++||.+||+-.-.|.. +.++.+..+++.|-|||.|++.|.|++|+.. |...|+.|-|+|..+..
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSR 181 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHH
Confidence 346888999999999999999998765555 5566677889999999999999999999966 77889999999987664
Q ss_pred C
Q psy15515 122 K 122 (242)
Q Consensus 122 ~ 122 (242)
.
T Consensus 182 ~ 182 (510)
T KOG4211|consen 182 A 182 (510)
T ss_pred H
Confidence 4
No 92
>KOG0120|consensus
Probab=98.13 E-value=2e-06 Score=80.59 Aligned_cols=84 Identities=27% Similarity=0.498 Sum_probs=78.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
....++||++|+..+++..+.++...||.+....++.|. +|-++||+|.+|.+....+.|+..|||..+++++|.|..|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 345689999999999999999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred ccCCC
Q psy15515 120 IKKQG 124 (242)
Q Consensus 120 ~~~~~ 124 (242)
.....
T Consensus 367 ~~g~~ 371 (500)
T KOG0120|consen 367 IVGAS 371 (500)
T ss_pred hccch
Confidence 86654
No 93
>KOG0147|consensus
Probab=97.99 E-value=2.4e-06 Score=79.66 Aligned_cols=83 Identities=20% Similarity=0.265 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
+.+.+++|+-.|....+.-||+++|+.+|.|.+|.++.|+ +++++|.+||+|.+.+....|| .|.|..+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecc
Confidence 4556799999999999999999999999999999999999 8999999999999999999999 8899999999999987
Q ss_pred cccCC
Q psy15515 119 AIKKQ 123 (242)
Q Consensus 119 a~~~~ 123 (242)
....+
T Consensus 255 sEaek 259 (549)
T KOG0147|consen 255 SEAEK 259 (549)
T ss_pred cHHHH
Confidence 55443
No 94
>KOG0106|consensus
Probab=97.88 E-value=9.7e-06 Score=68.40 Aligned_cols=76 Identities=20% Similarity=0.365 Sum_probs=65.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
......++|.++..++.+.+|.+.|..+|.+....+ .++++||+|++.+++.+|++.|++..+.|+.|.+...
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 445678999999999999999999999999855444 2589999999999999999999999999999999654
Q ss_pred ccC
Q psy15515 120 IKK 122 (242)
Q Consensus 120 ~~~ 122 (242)
...
T Consensus 169 ~~d 171 (216)
T KOG0106|consen 169 SRD 171 (216)
T ss_pred Ccc
Confidence 433
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.88 E-value=3.5e-05 Score=68.34 Aligned_cols=80 Identities=25% Similarity=0.431 Sum_probs=63.2
Q ss_pred CcEEEEcCCCCCCCHHH----H--HHHhhcCCCeEEEEEeeCC-C-CCccc-E-EEEEEcCHHHHHHHHHHcCCCEeCCe
Q psy15515 43 PKRVFVGGITSTTTEDE----L--CELFSQYGIVKQVKIVVDR-A-GISKG-Y-GFITFDSEEEAKRLQKDSDNIMFKEK 112 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~----L--~~~F~~~G~i~~v~i~~~~-~-g~skg-~-gFV~F~s~e~A~~Al~~l~~~~i~G~ 112 (242)
..-+||-+|+..+.+|+ | .++|++||+|..|.|-+.. . .-..+ + .||+|.+.|+|.++|.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 44689999988776665 3 5799999999998776543 1 11122 3 28999999999999999999999999
Q ss_pred EEEEeecccC
Q psy15515 113 RLNIAPAIKK 122 (242)
Q Consensus 113 ~l~V~~a~~~ 122 (242)
.|+..+...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999987755
No 96
>KOG2314|consensus
Probab=97.86 E-value=7.8e-05 Score=70.02 Aligned_cols=81 Identities=21% Similarity=0.299 Sum_probs=66.7
Q ss_pred CCCCCcEEEEcCCCCCCCH------HHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeC-C
Q psy15515 39 GTVVPKRVFVGGITSTTTE------DELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFK-E 111 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te------~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~-G 111 (242)
.+.....|+|.|+|.--.. ..|..+|+++|+|....+..+..|..+||.|++|++..+|+.|++.|||+.|+ .
T Consensus 54 ~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 54 AEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred cCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 3455568999999864332 35678999999999999998886779999999999999999999999999886 6
Q ss_pred eEEEEeec
Q psy15515 112 KRLNIAPA 119 (242)
Q Consensus 112 ~~l~V~~a 119 (242)
+.+.|..-
T Consensus 134 Htf~v~~f 141 (698)
T KOG2314|consen 134 HTFFVRLF 141 (698)
T ss_pred ceEEeehh
Confidence 67777643
No 97
>KOG4210|consensus
Probab=97.80 E-value=1.4e-05 Score=70.74 Aligned_cols=81 Identities=23% Similarity=0.421 Sum_probs=73.8
Q ss_pred CcEEE-EcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 43 PKRVF-VGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 43 ~~~lf-VgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
..++| |++|+..+++++|+..|..+|.|..+++..+. ++..+|||+|.|.+...+..++.. +...+.++.+.+.+..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 34666 99999999999999999999999999999988 999999999999999999999877 8889999999999988
Q ss_pred cCCC
Q psy15515 121 KKQG 124 (242)
Q Consensus 121 ~~~~ 124 (242)
.+..
T Consensus 263 ~~~~ 266 (285)
T KOG4210|consen 263 PRPK 266 (285)
T ss_pred CCcc
Confidence 7754
No 98
>KOG1365|consensus
Probab=97.79 E-value=8.6e-05 Score=66.88 Aligned_cols=80 Identities=16% Similarity=0.387 Sum_probs=69.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCC-eEE--EEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGI-VKQ--VKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~-i~~--v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...|-+.+||+..+.+||.+||..|.. |.. |.++.+..|+..|-|||+|.+.|+|..|..+.+++...+|.|+|-.+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 458889999999999999999999963 333 67777778999999999999999999999998988888999999877
Q ss_pred ccC
Q psy15515 120 IKK 122 (242)
Q Consensus 120 ~~~ 122 (242)
...
T Consensus 360 S~e 362 (508)
T KOG1365|consen 360 SVE 362 (508)
T ss_pred cHH
Confidence 654
No 99
>KOG1457|consensus
Probab=97.78 E-value=2.9e-05 Score=65.36 Aligned_cols=63 Identities=27% Similarity=0.418 Sum_probs=52.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEe
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMF 109 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i 109 (242)
.+|||.||..+++|++|+.+|+.|-....++|.. ++| -.++|++|++.+.|..|+..|+|..|
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~g--~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RGG--MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CCC--cceEeecHHHHHHHHHHHHHhhccee
Confidence 3899999999999999999999997666666532 333 36899999999999999999988765
No 100
>KOG4206|consensus
Probab=97.75 E-value=0.00013 Score=61.47 Aligned_cols=77 Identities=22% Similarity=0.386 Sum_probs=67.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeC-CeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFK-EKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~-G~~l~V~~ 118 (242)
......||+.|||.+++.+.|..+|.+|....+++++... ++.|||+|.+...+..|...+++..|- ...++|.+
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 3455689999999999999999999999999999888754 689999999999999999999998887 77888887
Q ss_pred cc
Q psy15515 119 AI 120 (242)
Q Consensus 119 a~ 120 (242)
++
T Consensus 219 a~ 220 (221)
T KOG4206|consen 219 AK 220 (221)
T ss_pred cC
Confidence 65
No 101
>KOG4307|consensus
Probab=97.72 E-value=0.00012 Score=70.38 Aligned_cols=80 Identities=20% Similarity=0.383 Sum_probs=69.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCe-EEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIV-KQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
+....+-|-+.|+|++++-+||.+||..|-.+ .+|.+-++..|+..|-+-|.|++.++|.+|...|+++.|..++|++.
T Consensus 863 ~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 863 KSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 44455688899999999999999999999644 45666666689999999999999999999999999999999999876
Q ss_pred e
Q psy15515 118 P 118 (242)
Q Consensus 118 ~ 118 (242)
.
T Consensus 943 i 943 (944)
T KOG4307|consen 943 I 943 (944)
T ss_pred e
Confidence 4
No 102
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.70 E-value=6.4e-05 Score=56.75 Aligned_cols=68 Identities=22% Similarity=0.388 Sum_probs=43.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCC-----EeCCeEEEEe
Q psy15515 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNI-----MFKEKRLNIA 117 (242)
Q Consensus 45 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~-----~i~G~~l~V~ 117 (242)
-|+|.++...++-++|++.|+.||.|..|.+.... ..|+|.|.+.+.|+.|++.+... .|.+..+.+.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 47888899999999999999999999999887642 58999999999999999876433 4555555443
No 103
>KOG3152|consensus
Probab=97.55 E-value=5.1e-05 Score=64.97 Aligned_cols=70 Identities=27% Similarity=0.358 Sum_probs=60.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-C--------CCcc----cEEEEEEcCHHHHHHHHHHcCCCEeC
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-A--------GISK----GYGFITFDSEEEAKRLQKDSDNIMFK 110 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~--------g~sk----g~gFV~F~s~e~A~~Al~~l~~~~i~ 110 (242)
.-||+++||+..+..-|+++|+.||.|-.|.+.... . |.++ .-|+|+|.+...|.++.+.||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 489999999999999999999999999999887654 3 2222 24789999999999999999999999
Q ss_pred CeE
Q psy15515 111 EKR 113 (242)
Q Consensus 111 G~~ 113 (242)
|++
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 986
No 104
>KOG0120|consensus
Probab=97.35 E-value=0.00067 Score=63.87 Aligned_cols=65 Identities=15% Similarity=0.254 Sum_probs=54.1
Q ss_pred HHHHHHhhcCCCeEEEEEeeC-CC---CCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccC
Q psy15515 58 DELCELFSQYGIVKQVKIVVD-RA---GISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKK 122 (242)
Q Consensus 58 ~~L~~~F~~~G~i~~v~i~~~-~~---g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~ 122 (242)
|+++..+++||.|..|.+.++ .+ .-..|--||+|.+.+++++|.++|+|..++||.+...|....
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 345556779999999999988 32 234577899999999999999999999999999999887654
No 105
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.33 E-value=0.00058 Score=45.00 Aligned_cols=52 Identities=17% Similarity=0.388 Sum_probs=41.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHH
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQ 101 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al 101 (242)
+.|-|.+.+.+..+..|+ .|..||+|.++.+.. ..-+.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 467788888776655555 888999999988863 2468999999999999985
No 106
>KOG1456|consensus
Probab=97.24 E-value=0.0022 Score=57.89 Aligned_cols=82 Identities=22% Similarity=0.303 Sum_probs=71.1
Q ss_pred CCCCCCcEEEEcCCCCCC-CHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEE
Q psy15515 38 YGTVVPKRVFVGGITSTT-TEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNI 116 (242)
Q Consensus 38 ~~~~~~~~lfVgnLp~~~-te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V 116 (242)
.+..+..-+.|-+|.... +.+.|..+|-.||.|++|++++.+ .|-|.|+..+..+.++|+..||+..+-|.+|.|
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 455666788999998654 557899999999999999999876 578999999999999999999999999999999
Q ss_pred eecccCC
Q psy15515 117 APAIKKQ 123 (242)
Q Consensus 117 ~~a~~~~ 123 (242)
...+...
T Consensus 358 ~~SkQ~~ 364 (494)
T KOG1456|consen 358 CVSKQNF 364 (494)
T ss_pred eeccccc
Confidence 9887553
No 107
>KOG0105|consensus
Probab=97.23 E-value=0.0011 Score=54.61 Aligned_cols=70 Identities=21% Similarity=0.312 Sum_probs=60.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeC--CeEEEEe
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFK--EKRLNIA 117 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~--G~~l~V~ 117 (242)
.+.+|.|.+||...++.||+++..+-|.|....+.+| |++.|+|...|+.+-|+..|+...+. |....+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 3468999999999999999999999999999999887 79999999999999999999876653 4444333
No 108
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.22 E-value=0.0018 Score=48.33 Aligned_cols=77 Identities=17% Similarity=0.284 Sum_probs=50.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEE-EeeC-------CCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCe-
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVK-IVVD-------RAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEK- 112 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~-i~~~-------~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~- 112 (242)
..+-|.|-+.|.. ....+.+.|++||.|++.. +.++ +.-....+-.|+|.++.+|.+||.+ ||..|+|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 4456888889987 4455667899999998874 1111 1011346889999999999999955 99999885
Q ss_pred EEEEeecc
Q psy15515 113 RLNIAPAI 120 (242)
Q Consensus 113 ~l~V~~a~ 120 (242)
.+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 45677764
No 109
>KOG1548|consensus
Probab=97.17 E-value=0.0017 Score=57.92 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=62.3
Q ss_pred CCCCcEEEEcCCC----CCCC-------HHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCE
Q psy15515 40 TVVPKRVFVGGIT----STTT-------EDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIM 108 (242)
Q Consensus 40 ~~~~~~lfVgnLp----~~~t-------e~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~ 108 (242)
-...++|.+.|+= ...+ .+||.+-..+||.|.+|.|.-. ...|.+-|.|.+.++|+.||+.|+|..
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3456788888872 2333 2566677889999999987632 246899999999999999999999999
Q ss_pred eCCeEEEEeecccC
Q psy15515 109 FKEKRLNIAPAIKK 122 (242)
Q Consensus 109 i~G~~l~V~~a~~~ 122 (242)
++||.|....-..+
T Consensus 339 fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 339 FDGRQLTASIWDGK 352 (382)
T ss_pred ecceEEEEEEeCCc
Confidence 99999988765544
No 110
>KOG0129|consensus
Probab=97.17 E-value=0.0014 Score=61.16 Aligned_cols=63 Identities=32% Similarity=0.558 Sum_probs=48.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC--CC--Cccc---EEEEEEcCHHHHHHHHHHcC
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR--AG--ISKG---YGFITFDSEEEAKRLQKDSD 105 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~g--~skg---~gFV~F~s~e~A~~Al~~l~ 105 (242)
-.++||||+||++++|+.|...|..||.+ .+.+.... .+ -.+| |.|+.|+++.+....+.+..
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 35799999999999999999999999975 34444211 11 2456 99999999999888776643
No 111
>KOG0129|consensus
Probab=97.16 E-value=0.0013 Score=61.40 Aligned_cols=78 Identities=29% Similarity=0.437 Sum_probs=63.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhh-cCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHH----cCCCEeCCeEEE
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFS-QYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKD----SDNIMFKEKRLN 115 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~----l~~~~i~G~~l~ 115 (242)
..+|||||+||.-++.++|-.+|+ -||.|+.+-|-+|. -+..+|-|=|+|.+...--+||.. |+..+|+ ++|+
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~-KRVE 447 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDID-KRVE 447 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccc-eeee
Confidence 346999999999999999999998 79999999999995 788999999999999999999964 2222333 3566
Q ss_pred Eeecc
Q psy15515 116 IAPAI 120 (242)
Q Consensus 116 V~~a~ 120 (242)
|+...
T Consensus 448 IkPYv 452 (520)
T KOG0129|consen 448 IKPYV 452 (520)
T ss_pred eccee
Confidence 66444
No 112
>KOG1190|consensus
Probab=97.13 E-value=0.0016 Score=59.39 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=63.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCe-EEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEK-RLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~-~l~V~~a~ 120 (242)
...+|...|+|.+++||+|+..|..-|...+..... ++.+.++++.+++.|+|..|+..++++.+++. -|+|.+.+
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~vkafkff---~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF---QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceEEeeeec---CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 345899999999999999999999988765543332 33567999999999999999999999998755 89999976
Q ss_pred c
Q psy15515 121 K 121 (242)
Q Consensus 121 ~ 121 (242)
.
T Consensus 490 s 490 (492)
T KOG1190|consen 490 S 490 (492)
T ss_pred c
Confidence 4
No 113
>KOG1855|consensus
Probab=96.99 E-value=0.00069 Score=61.91 Aligned_cols=66 Identities=14% Similarity=0.354 Sum_probs=56.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeC---C---CCCc--------ccEEEEEEcCHHHHHHHHHHcCC
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD---R---AGIS--------KGYGFITFDSEEEAKRLQKDSDN 106 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~---~---~g~s--------kg~gFV~F~s~e~A~~Al~~l~~ 106 (242)
...++|.+.|||.+-.-+-|.++|+.+|.|..|+|... . .|.. +-+|||+|+..+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47889999999999999999999999999999999776 2 2222 45799999999999999988754
No 114
>KOG1365|consensus
Probab=96.94 E-value=0.00062 Score=61.49 Aligned_cols=73 Identities=21% Similarity=0.289 Sum_probs=58.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcC----CCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 45 RVFVGGITSTTTEDELCELFSQY----GIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 45 ~lfVgnLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
-|-+.+||+++++.|+.+||..- |..+.+.+++..+|+..|-|||.|..+++|+.|+.+ |...|+-|.|++-.
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 46678999999999999999732 455677777777999999999999999999999965 55556656555543
No 115
>KOG2202|consensus
Probab=96.88 E-value=0.00044 Score=59.31 Aligned_cols=63 Identities=16% Similarity=0.341 Sum_probs=50.5
Q ss_pred HHHHHHhh-cCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 58 DELCELFS-QYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 58 ~~L~~~F~-~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
+|+...|+ +||+|+++.|-.+..-.-+|=.+|.|...++|++|++.||+..++|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45555555 8999999866554333356788999999999999999999999999999887654
No 116
>KOG1996|consensus
Probab=96.83 E-value=0.0044 Score=54.32 Aligned_cols=65 Identities=22% Similarity=0.148 Sum_probs=52.5
Q ss_pred HHHHHHhhcCCCeEEEEEeeCCC-CCc-ccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccC
Q psy15515 58 DELCELFSQYGIVKQVKIVVDRA-GIS-KGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKK 122 (242)
Q Consensus 58 ~~L~~~F~~~G~i~~v~i~~~~~-g~s-kg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~ 122 (242)
+++++..++||.|..|.|..+.+ -.. ----||+|+..++|.+|+-.|||..|+||.+...|.+-.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 45677889999999998887752 111 234699999999999999999999999999988876544
No 117
>KOG1456|consensus
Probab=96.80 E-value=0.03 Score=50.76 Aligned_cols=70 Identities=23% Similarity=0.191 Sum_probs=59.3
Q ss_pred CCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeC--CeEEEEeecccCC
Q psy15515 50 GITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFK--EKRLNIAPAIKKQ 123 (242)
Q Consensus 50 nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~--G~~l~V~~a~~~~ 123 (242)
|--+-+|-+.|..+....|+|.+|.|.+. +| --|.|||++.+.|++|.+.|||..|. --.|+|++|++.+
T Consensus 129 Np~YpItvDVly~Icnp~GkVlRIvIfkk-ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 129 NPQYPITVDVLYTICNPQGKVLRIVIFKK-NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred cCccccchhhhhhhcCCCCceEEEEEEec-cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 33467888999999999999999998874 33 46899999999999999999999885 4578999998764
No 118
>KOG0128|consensus
Probab=96.66 E-value=0.0014 Score=64.45 Aligned_cols=80 Identities=25% Similarity=0.288 Sum_probs=71.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccC
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKK 122 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~ 122 (242)
...+||.|.|+..|.++|+.++.++|.+.++.++..+.|+.+|.+||.|.+..++.++....+...+.-+.+.|...++.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 45899999999999999999999999999999999999999999999999999999999888877777777777776553
No 119
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.55 E-value=0.011 Score=47.01 Aligned_cols=70 Identities=29% Similarity=0.330 Sum_probs=50.9
Q ss_pred EEEEcCCC------CCCCH---HHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEE
Q psy15515 45 RVFVGGIT------STTTE---DELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLN 115 (242)
Q Consensus 45 ~lfVgnLp------~~~te---~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~ 115 (242)
+|.|.-+. ..+++ .+|.+.|..||.+.=+++.. +--+|+|.+-+.|-+|+ .++|.+++|+.|+
T Consensus 29 TVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~-------~~mwVTF~dg~sALaal-s~dg~~v~g~~l~ 100 (146)
T PF08952_consen 29 TVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG-------DTMWVTFRDGQSALAAL-SLDGIQVNGRTLK 100 (146)
T ss_dssp EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET-------TCEEEEESSCHHHHHHH-HGCCSEETTEEEE
T ss_pred eEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC-------CeEEEEECccHHHHHHH-ccCCcEECCEEEE
Confidence 66665444 23333 36778899999998888875 45689999999999999 6799999999999
Q ss_pred EeecccC
Q psy15515 116 IAPAIKK 122 (242)
Q Consensus 116 V~~a~~~ 122 (242)
|+...+.
T Consensus 101 i~LKtpd 107 (146)
T PF08952_consen 101 IRLKTPD 107 (146)
T ss_dssp EEE----
T ss_pred EEeCCcc
Confidence 9976544
No 120
>KOG2193|consensus
Probab=96.47 E-value=0.0018 Score=59.26 Aligned_cols=76 Identities=17% Similarity=0.358 Sum_probs=60.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCC-EeCCeEEEEeecccCC
Q psy15515 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNI-MFKEKRLNIAPAIKKQ 123 (242)
Q Consensus 45 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~-~i~G~~l~V~~a~~~~ 123 (242)
++|+|||...++..||+.+|...-.-..-.++. ..||+||.+.+..-|.+|++.++|+ ++.|+++.|....+++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk 77 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK 77 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH
Confidence 699999999999999999997652111111222 1489999999999999999999987 6889999999888775
Q ss_pred CC
Q psy15515 124 GF 125 (242)
Q Consensus 124 ~~ 125 (242)
.+
T Consensus 78 qr 79 (584)
T KOG2193|consen 78 QR 79 (584)
T ss_pred HH
Confidence 43
No 121
>KOG0112|consensus
Probab=96.47 E-value=0.007 Score=59.99 Aligned_cols=77 Identities=18% Similarity=0.324 Sum_probs=67.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCC--eEEEEeec
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKE--KRLNIAPA 119 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G--~~l~V~~a 119 (242)
..+.+|+++|..|+....|...|..||.|..|.+-.. .-|++|.|++...++.|++.|-|..|+| ++|+|.++
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 4579999999999999999999999999998877543 3799999999999999999999999985 67899888
Q ss_pred ccCC
Q psy15515 120 IKKQ 123 (242)
Q Consensus 120 ~~~~ 123 (242)
....
T Consensus 529 ~~~~ 532 (975)
T KOG0112|consen 529 SPPG 532 (975)
T ss_pred cCCC
Confidence 7664
No 122
>KOG4307|consensus
Probab=96.41 E-value=0.0021 Score=62.09 Aligned_cols=78 Identities=8% Similarity=0.063 Sum_probs=66.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEE-EEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQ-VKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
....|||..||..+++.++.++|...-.|++ |.|....+++-++.|||+|..++++..|..--+.+.++.+.|+|.-.
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 3458999999999999999999998878877 77777778999999999999988888887666667778888898743
No 123
>KOG0115|consensus
Probab=96.41 E-value=0.0037 Score=53.77 Aligned_cols=77 Identities=16% Similarity=0.319 Sum_probs=64.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCC----EeCCeEEEEeec
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNI----MFKEKRLNIAPA 119 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~----~i~G~~l~V~~a 119 (242)
..|||.||...+..+.|+..|+.||.|+...+..|..++..+-++|+|...-.+.+|+...... ...++..-|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 6899999999999999999999999999888888888889999999999999999999877432 334555555544
Q ss_pred c
Q psy15515 120 I 120 (242)
Q Consensus 120 ~ 120 (242)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 3
No 124
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.32 E-value=0.024 Score=38.55 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=45.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcC---CCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQY---GIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDS 104 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~---G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l 104 (242)
...+|+|.++. +.+.+|++.+|..| .....|.++.|. -+-|.|.+.+.|.+||..|
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 45589999996 47888999999998 235678888873 5778999999999999764
No 125
>KOG0128|consensus
Probab=96.24 E-value=0.00039 Score=68.15 Aligned_cols=67 Identities=25% Similarity=0.451 Sum_probs=58.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeC
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFK 110 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~ 110 (242)
.++||.||+..+.++||...|..+|.+..+++...+ +++.||+|+|+|...+.+.+|+...++..++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 478999999999999999999999999888777445 7899999999999999999999766655444
No 126
>KOG0112|consensus
Probab=96.00 E-value=0.0023 Score=63.29 Aligned_cols=84 Identities=17% Similarity=0.268 Sum_probs=70.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 38 YGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 38 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
.+....++||+|||...+++.+|+..|..+|.|.+|.|-+.+-+.-.-||||.|.+.+.+..|+..+.+..|....+++.
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 34556789999999999999999999999999999998776545556799999999999999999999888876666666
Q ss_pred eccc
Q psy15515 118 PAIK 121 (242)
Q Consensus 118 ~a~~ 121 (242)
+...
T Consensus 447 lG~~ 450 (975)
T KOG0112|consen 447 LGQP 450 (975)
T ss_pred cccc
Confidence 6643
No 127
>KOG2068|consensus
Probab=95.75 E-value=0.0032 Score=56.06 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=61.8
Q ss_pred cEEEEcCCCCCCCHHHHH---HHhhcCCCeEEEEEeeCCC--CC--cccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEE
Q psy15515 44 KRVFVGGITSTTTEDELC---ELFSQYGIVKQVKIVVDRA--GI--SKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNI 116 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~--g~--skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V 116 (242)
.-+||-+|+..+.++++. +.|++||.|..+.+..+.. .. .-.-++|+|+..|+|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 467888898877665543 5889999999998877551 11 1223799999999999999999999999999888
Q ss_pred eecccC
Q psy15515 117 APAIKK 122 (242)
Q Consensus 117 ~~a~~~ 122 (242)
.++..+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 777655
No 128
>KOG2416|consensus
Probab=95.56 E-value=0.033 Score=53.14 Aligned_cols=77 Identities=19% Similarity=0.231 Sum_probs=62.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-CCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEe---CCeEEEE
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQ-YGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMF---KEKRLNI 116 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i---~G~~l~V 116 (242)
.....|||.||-.-+|...|+.++.+ .|.|++. + .| +.|..|||.|.+.++|.+.+.+|||..+ +++.|.+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-W-mD---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-W-MD---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH-H-HH---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 34568999999999999999999985 5566665 2 22 2568899999999999999999999875 6788888
Q ss_pred eecccC
Q psy15515 117 APAIKK 122 (242)
Q Consensus 117 ~~a~~~ 122 (242)
.|+...
T Consensus 517 df~~~d 522 (718)
T KOG2416|consen 517 DFVRAD 522 (718)
T ss_pred eecchh
Confidence 887654
No 129
>KOG4676|consensus
Probab=95.54 E-value=0.03 Score=51.00 Aligned_cols=76 Identities=17% Similarity=0.313 Sum_probs=60.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC----CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR----AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
..|-|.||....+.+.++.+|+..|+|.++.++-.. -......|||.|.+...+..|- .|.++.+-++.|.|..+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 379999999999999999999999999999887643 2335668999999999988887 56666666666655544
Q ss_pred c
Q psy15515 120 I 120 (242)
Q Consensus 120 ~ 120 (242)
.
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 130
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.15 E-value=0.14 Score=35.26 Aligned_cols=55 Identities=25% Similarity=0.493 Sum_probs=43.7
Q ss_pred CCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEE
Q psy15515 54 TTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNI 116 (242)
Q Consensus 54 ~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V 116 (242)
.++-+|++..+.+|+ ..+|..|++ || ||.|.+.++|+++....++..+.+.++.+
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDRT----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecCC----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 567789999999996 334445542 44 89999999999999999999988887765
No 131
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.10 E-value=0.12 Score=36.13 Aligned_cols=67 Identities=16% Similarity=0.331 Sum_probs=40.3
Q ss_pred EEEEc-CCCCCCCHHHHHHHhhcCC-----CeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 45 RVFVG-GITSTTTEDELCELFSQYG-----IVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 45 ~lfVg-nLp~~~te~~L~~~F~~~G-----~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
++||. +=-..++..+|..++...+ .|-.++|.. .|.||+-.. +.++.+++.|++..+.|++++|+.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~-------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD-------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S-------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee-------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 45653 2345678889988887765 445677754 589998764 578899999999999999999987
Q ss_pred c
Q psy15515 119 A 119 (242)
Q Consensus 119 a 119 (242)
|
T Consensus 74 A 74 (74)
T PF03880_consen 74 A 74 (74)
T ss_dssp -
T ss_pred C
Confidence 5
No 132
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.83 E-value=0.089 Score=43.65 Aligned_cols=62 Identities=27% Similarity=0.236 Sum_probs=46.1
Q ss_pred CHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcC--CCEeCCeEEEEeecccC
Q psy15515 56 TEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD--NIMFKEKRLNIAPAIKK 122 (242)
Q Consensus 56 te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~--~~~i~G~~l~V~~a~~~ 122 (242)
..+.|+++|..|+.+..+..... -+-..|.|.+.++|.+|...|+ +..+.|..++|-++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 34789999999998888776653 4667899999999999999999 99999999999998544
No 133
>KOG2135|consensus
Probab=94.41 E-value=0.03 Score=52.10 Aligned_cols=75 Identities=13% Similarity=0.144 Sum_probs=58.8
Q ss_pred CCcEEEEcCCCCCC-CHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTT-TEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~-te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
+...|-+.-.+... +-++|...|.+||+|..|.+-.. --.|.|+|.+..+|-+|. ..++..|++|.|+|.|-+
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchh-ccccceecCceeEEEEec
Confidence 33444445555555 44899999999999999988553 357899999999997776 458999999999999988
Q ss_pred cC
Q psy15515 121 KK 122 (242)
Q Consensus 121 ~~ 122 (242)
..
T Consensus 445 ps 446 (526)
T KOG2135|consen 445 PS 446 (526)
T ss_pred CC
Confidence 64
No 134
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.34 E-value=0.51 Score=35.82 Aligned_cols=66 Identities=15% Similarity=0.185 Sum_probs=49.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcC-CCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCC
Q psy15515 45 RVFVGGITSTTTEDELCELFSQY-GIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKE 111 (242)
Q Consensus 45 ~lfVgnLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G 111 (242)
.+.+...+..++.++|..+.+.+ ..|..++|++|... ++-.+++.|.+.+.|+.-.+.+||+.++.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 45555666667777777665555 35678889887532 56688999999999999999999998764
No 135
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.61 E-value=0.28 Score=35.35 Aligned_cols=54 Identities=20% Similarity=0.370 Sum_probs=41.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q psy15515 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105 (242)
Q Consensus 45 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~ 105 (242)
.||--..|......||.++|+.||.| .|.++.| .-|||...+++.+..++..+.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~d------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWIND------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCE-EEEEECT------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcC------CcEEEEeecHHHHHHHHHHhc
Confidence 34443499999999999999999986 5666665 589999999999999998775
No 136
>KOG2591|consensus
Probab=93.36 E-value=0.64 Score=44.39 Aligned_cols=67 Identities=22% Similarity=0.247 Sum_probs=52.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhc--CCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCC--CEeCCeEEEEe
Q psy15515 45 RVFVGGITSTTTEDELCELFSQ--YGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDN--IMFKEKRLNIA 117 (242)
Q Consensus 45 ~lfVgnLp~~~te~~L~~~F~~--~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~--~~i~G~~l~V~ 117 (242)
-|.+..|+..+-+|+++.+|.. +-++.+|.+..+. -=||+|++.++|+.|.+.|.. ++|.|+.|..+
T Consensus 177 IvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 177 IVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred EEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 4556899999999999999964 6788888887653 238999999999999987743 46778877544
No 137
>KOG4660|consensus
Probab=93.33 E-value=0.16 Score=48.14 Aligned_cols=81 Identities=20% Similarity=0.248 Sum_probs=57.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhc----------------------------CCCeEEEEEeeCC-CCCcccEEEEEEcC
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQ----------------------------YGIVKQVKIVVDR-AGISKGYGFITFDS 93 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~----------------------------~G~i~~v~i~~~~-~g~skg~gFV~F~s 93 (242)
.+++-|++|+......||.++... .|.-..+.+..|- +....|||||.|.+
T Consensus 361 Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~s 440 (549)
T KOG4660|consen 361 RTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTS 440 (549)
T ss_pred hhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecC
Confidence 346666777766666666554431 3444556666665 66778999999999
Q ss_pred HHHHHHHHHHcCCCE---eCCe-EEEEeecccCC
Q psy15515 94 EEEAKRLQKDSDNIM---FKEK-RLNIAPAIKKQ 123 (242)
Q Consensus 94 ~e~A~~Al~~l~~~~---i~G~-~l~V~~a~~~~ 123 (242)
.+.+..+.+++||+. |+++ ...+.||+-..
T Consensus 441 p~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQG 474 (549)
T KOG4660|consen 441 PEAIIRFYKAFNGKKWEKFNSEKIASITYARIQG 474 (549)
T ss_pred HHHHHHHHHHHcCCchhhhcceeeeeeehhhhhc
Confidence 999999999999985 4444 45788877543
No 138
>KOG4574|consensus
Probab=93.23 E-value=0.27 Score=49.00 Aligned_cols=76 Identities=17% Similarity=0.133 Sum_probs=65.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEe--CCeEEEEeecccC
Q psy15515 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMF--KEKRLNIAPAIKK 122 (242)
Q Consensus 45 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i--~G~~l~V~~a~~~ 122 (242)
+.++.|..-+.+...|-.+|++||.|.+++..++- ..+.|+|.+.+.|-.|+++|+|+++ .|-+.+|.+|+.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc-----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 55666777788889999999999999999887764 6899999999999999999999985 5888999999876
Q ss_pred CCC
Q psy15515 123 QGF 125 (242)
Q Consensus 123 ~~~ 125 (242)
.-.
T Consensus 375 ~~~ 377 (1007)
T KOG4574|consen 375 PMY 377 (1007)
T ss_pred ccc
Confidence 543
No 139
>KOG4285|consensus
Probab=93.21 E-value=0.42 Score=42.31 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=54.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeE-EEEeeccc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKR-LNIAPAIK 121 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~-l~V~~a~~ 121 (242)
+.=|-|-+++..-. ..|..+|++||.|++..... .-.|-+|.|.++.+|++||.. ||+.|+|.. |-|+.+..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~-----ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS-----NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC-----CCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCC
Confidence 34455556766533 45566899999998865442 236889999999999999954 999998875 46776665
Q ss_pred CCCC
Q psy15515 122 KQGF 125 (242)
Q Consensus 122 ~~~~ 125 (242)
+...
T Consensus 270 ksvi 273 (350)
T KOG4285|consen 270 KSVI 273 (350)
T ss_pred HHHh
Confidence 5443
No 140
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.76 E-value=0.17 Score=41.69 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=49.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhc-CCCe---EEEEEeeCC--C-CCcccEEEEEEcCHHHHHHHHHHcCCCEeCC---
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQ-YGIV---KQVKIVVDR--A-GISKGYGFITFDSEEEAKRLQKDSDNIMFKE--- 111 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~i---~~v~i~~~~--~-g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G--- 111 (242)
...+|.|.+||+.++|+++.+.+.. ++.- ..+.-.... . -....-|+|.|.+.+++......++|+.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4458999999999999999886665 5544 233211222 1 1234678999999999999999999987632
Q ss_pred --eEEEEeeccc
Q psy15515 112 --KRLNIAPAIK 121 (242)
Q Consensus 112 --~~l~V~~a~~ 121 (242)
....|++|--
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 2345666543
No 141
>KOG4210|consensus
Probab=91.49 E-value=0.094 Score=46.49 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=64.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...++|++++.+.+.+.+...++..+|.+....+.... ...++|++.+.|+..+.+..+++..-.+.+.+..+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46799999999999999899999999987777666644 77889999999999999999997655456666666555544
Q ss_pred cC
Q psy15515 121 KK 122 (242)
Q Consensus 121 ~~ 122 (242)
.+
T Consensus 167 ~~ 168 (285)
T KOG4210|consen 167 RR 168 (285)
T ss_pred cc
Confidence 33
No 142
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.19 E-value=0.66 Score=36.89 Aligned_cols=74 Identities=9% Similarity=0.097 Sum_probs=54.9
Q ss_pred CCCCcEEEEcCCCCCCCH-HHH---HHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEE
Q psy15515 40 TVVPKRVFVGGITSTTTE-DEL---CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLN 115 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te-~~L---~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~ 115 (242)
+..-.+|.|.=|..++.. +|| ...++.||.|.+|...- +.-|.|.|++..+|=+|+.+++. ..-|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 344458888866655533 444 45668899999987642 56899999999999999988875 55678888
Q ss_pred Eeecc
Q psy15515 116 IAPAI 120 (242)
Q Consensus 116 V~~a~ 120 (242)
+.|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 88754
No 143
>KOG2253|consensus
Probab=90.63 E-value=0.14 Score=49.51 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=61.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
..++||+|+...+.++-++.+...+|.|..++... |||.+|....-..+|+..++...++|.++.+...
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 45999999999999999999999999988776542 9999999999999999999999999999877664
No 144
>KOG0804|consensus
Probab=85.95 E-value=2.4 Score=39.64 Aligned_cols=68 Identities=13% Similarity=0.277 Sum_probs=57.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcC-CCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCC
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQY-GIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKE 111 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G 111 (242)
.+.|+|=.+|..++-.||..|...+ -.|.++++++|... .+=..+|.|.+.++|....+.+||+.|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 6789999999999999999988766 46789999996532 24467899999999999999999998764
No 145
>KOG2318|consensus
Probab=85.90 E-value=3.3 Score=39.86 Aligned_cols=79 Identities=27% Similarity=0.367 Sum_probs=60.2
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhhcC----CCeEEEEEeeCC-----------CCC---------------------
Q psy15515 40 TVVPKRVFVGGITST-TTEDELCELFSQY----GIVKQVKIVVDR-----------AGI--------------------- 82 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~-~te~~L~~~F~~~----G~i~~v~i~~~~-----------~g~--------------------- 82 (242)
....++|-|-|+.|+ +..+||..+|..| |.|++|.|.... .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345679999999986 5668999999876 689999876431 122
Q ss_pred ----------------cccEEEEEEcCHHHHHHHHHHcCCCEeC--CeEEEEee
Q psy15515 83 ----------------SKGYGFITFDSEEEAKRLQKDSDNIMFK--EKRLNIAP 118 (242)
Q Consensus 83 ----------------skg~gFV~F~s~e~A~~Al~~l~~~~i~--G~~l~V~~ 118 (242)
..-||.|+|.+.+.|....+..+|.++. +..|.++|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1238999999999999999999999987 45555554
No 146
>KOG4454|consensus
Probab=85.33 E-value=0.19 Score=42.67 Aligned_cols=77 Identities=22% Similarity=0.313 Sum_probs=63.8
Q ss_pred CCCCCCCCcEEEEcC----CCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCC
Q psy15515 36 PKYGTVVPKRVFVGG----ITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKE 111 (242)
Q Consensus 36 ~~~~~~~~~~lfVgn----Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G 111 (242)
..+++....+++.|+ |...++++.+...|+.-|.+..+++.++.+|+.+-++|+.+.-....-.++...++.+.--
T Consensus 73 ~l~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 73 DLEEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQ 152 (267)
T ss_pred hhccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCC
Confidence 345566677899998 8899999999999999999999999998899999999999988777777777766654433
Q ss_pred e
Q psy15515 112 K 112 (242)
Q Consensus 112 ~ 112 (242)
+
T Consensus 153 ~ 153 (267)
T KOG4454|consen 153 K 153 (267)
T ss_pred C
Confidence 3
No 147
>KOG4410|consensus
Probab=82.73 E-value=4.3 Score=35.89 Aligned_cols=59 Identities=8% Similarity=0.155 Sum_probs=42.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCe-EEEEEeeCCCCCcccEEEEEEcCH-------HHHHHHHHHcC
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIV-KQVKIVVDRAGISKGYGFITFDSE-------EEAKRLQKDSD 105 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~g~skg~gFV~F~s~-------e~A~~Al~~l~ 105 (242)
..+-||++||+.++.-.||+..+.+.+.+ .++.+.- ++|-||+.|.+. +++++++..++
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-----~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-----HFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeeec-----CCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 34579999999999999999999988754 3333322 467899999764 45555554443
No 148
>KOG4019|consensus
Probab=77.10 E-value=2.3 Score=35.12 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=53.5
Q ss_pred CCcEEEEcCCCCCCCH-----HHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCe-EEE
Q psy15515 42 VPKRVFVGGITSTTTE-----DELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEK-RLN 115 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te-----~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~-~l~ 115 (242)
-.+++++.+++.++-. ...+.+|.+|.+....++.+ +.++--|.|.+.+.|..|...+++..|.|+ .++
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 3456777777755433 23345666665544444443 234455679999999999999999999999 888
Q ss_pred EeecccCCC
Q psy15515 116 IAPAIKKQG 124 (242)
Q Consensus 116 V~~a~~~~~ 124 (242)
.-++.....
T Consensus 84 ~yfaQ~~~~ 92 (193)
T KOG4019|consen 84 LYFAQPGHP 92 (193)
T ss_pred EEEccCCCc
Confidence 888876643
No 149
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=69.92 E-value=9.9 Score=26.16 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=43.3
Q ss_pred HHHHHHhhcCC-CeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccCC
Q psy15515 58 DELCELFSQYG-IVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQ 123 (242)
Q Consensus 58 ~~L~~~F~~~G-~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~~ 123 (242)
++|++.|...| .|.++.-+..+ ++..-..-||+.+...+... .++=+.+.+.+++|+...++.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCCC
Confidence 46777787777 67777777766 56666677888776544222 345567889999999877654
No 150
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=68.88 E-value=9.3 Score=26.46 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=41.8
Q ss_pred HHHHHHhhcCC-CeEEEEEeeCCC-CCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccCC
Q psy15515 58 DELCELFSQYG-IVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQ 123 (242)
Q Consensus 58 ~~L~~~F~~~G-~i~~v~i~~~~~-g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~~ 123 (242)
++|++.|.++| .+.++..+...+ +..-..-||+....-+... .|+=+.|+|+++.|+...++.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcccC
Confidence 46788888888 677787777663 4444566777765433222 345567889999998766553
No 151
>KOG4483|consensus
Probab=64.17 E-value=18 Score=33.58 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=45.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCC-eEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHH
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGI-VKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKD 103 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~ 103 (242)
..-|=|.++|.....+||...|+.|+. --+|+++.| -.+|..|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhc
Confidence 457778899999999999999999963 456777766 4899999999999999854
No 152
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=63.80 E-value=12 Score=33.22 Aligned_cols=81 Identities=9% Similarity=0.176 Sum_probs=58.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC--------CCCcccEEEEEEcCHHHHHH----HHHHcCC-
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR--------AGISKGYGFITFDSEEEAKR----LQKDSDN- 106 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~--------~g~skg~gFV~F~s~e~A~~----Al~~l~~- 106 (242)
+...|.|.+.|+..+++-..+...|-+||.|++|.++.+. ..+......+.|-+++.|-. .+++|..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3456789999999999988888999999999999998764 22334567788888877654 2233322
Q ss_pred -CEeCCeEEEEeecc
Q psy15515 107 -IMFKEKRLNIAPAI 120 (242)
Q Consensus 107 -~~i~G~~l~V~~a~ 120 (242)
..+....|.+.+..
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 34667777777654
No 153
>KOG2236|consensus
Probab=62.97 E-value=14 Score=34.75 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=7.4
Q ss_pred HHHHHhhcCCCeE
Q psy15515 59 ELCELFSQYGIVK 71 (242)
Q Consensus 59 ~L~~~F~~~G~i~ 71 (242)
.|-.+|+-||.|.
T Consensus 246 ~lG~I~EiFGpV~ 258 (483)
T KOG2236|consen 246 ALGQIFEIFGPVK 258 (483)
T ss_pred cchhhhhhhcccC
Confidence 3445666666654
No 154
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=58.98 E-value=38 Score=31.61 Aligned_cols=42 Identities=29% Similarity=0.471 Sum_probs=29.2
Q ss_pred CCCCCCCCCcEEEEcCCCCC-CCHHHHHHHhhcC----CCeEEEEEee
Q psy15515 35 APKYGTVVPKRVFVGGITST-TTEDELCELFSQY----GIVKQVKIVV 77 (242)
Q Consensus 35 ~~~~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~----G~i~~v~i~~ 77 (242)
.|..|+. .++|-|-||.|+ +...||..+|+.| |.+..|.|..
T Consensus 139 ~pe~G~~-tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 139 VPEEGNP-TKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred ccCCCCc-ccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 3444433 457888899985 5668999999876 6777777543
No 155
>KOG2193|consensus
Probab=57.02 E-value=0.52 Score=43.60 Aligned_cols=76 Identities=14% Similarity=0.279 Sum_probs=61.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEe-eCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIV-VDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~-~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
.+++-|.|++....++.|..+...||.++.|... .|. -.-.--|+|.+.+.++.||..+++..+....++|.|--.
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~---etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS---ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch---HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 4578899999999999999999999999988653 332 112223678899999999999999999999998887543
No 156
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=53.93 E-value=17 Score=29.91 Aligned_cols=62 Identities=21% Similarity=0.382 Sum_probs=42.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCC-CCcccEEEEEEcCHHHHHHHH
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA-GISKGYGFITFDSEEEAKRLQ 101 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~-g~skg~gFV~F~s~e~A~~Al 101 (242)
......+++++++..++..++...|..+|.+....+..... .....+.++.+.....+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 44566899999999999999999999999997777666552 223344444444444433333
No 157
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=51.29 E-value=39 Score=22.92 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=15.7
Q ss_pred HHHHHHhhcCCCeEEEEEe
Q psy15515 58 DELCELFSQYGIVKQVKIV 76 (242)
Q Consensus 58 ~~L~~~F~~~G~i~~v~i~ 76 (242)
.+|+++|+..|.|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999998766553
No 158
>KOG4676|consensus
Probab=51.24 E-value=2.8 Score=38.61 Aligned_cols=64 Identities=17% Similarity=0.086 Sum_probs=49.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeC
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFK 110 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~ 110 (242)
.++++|++|...+...++.+.|..+|+|....+... -..-++-++|........|+. ++|.++.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask---~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASK---SRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc---CCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 378999999999999999999999999877665432 234566789988888888884 4666654
No 159
>PRK11901 hypothetical protein; Reviewed
Probab=49.86 E-value=33 Score=30.98 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=40.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEE--EEcCHHHHHHHHHHcCC
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFI--TFDSEEEAKRLQKDSDN 106 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV--~F~s~e~A~~Al~~l~~ 106 (242)
..+|-+..+ -++++|+.|..+++ +..+++.+.. +|+ ..|.+| .|.+.++|++|++.|-.
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCH
Confidence 345555443 45788888888775 4556665544 444 356554 58999999999998864
No 160
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=48.21 E-value=40 Score=24.35 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=33.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFD 92 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~ 92 (242)
..-+|||+++..+.|.-.+.+.+..+.-.-+-+..+.+ ..||.|-.+.
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n--eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN--EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC--CCCEEEEEeC
Confidence 34699999999999887777766555444444444333 5689887773
No 161
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=47.76 E-value=23 Score=31.44 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=25.9
Q ss_pred EEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccCCC
Q psy15515 87 GFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQG 124 (242)
Q Consensus 87 gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~~~ 124 (242)
|||+|++..+|+.|++.+.... ++++++..|-+.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 7999999999999998655443 34556666655543
No 162
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=40.34 E-value=13 Score=34.41 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=50.4
Q ss_pred CCCCcEEEEcCCCCCCCHH--------HHHHHhhc--CCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHH
Q psy15515 40 TVVPKRVFVGGITSTTTED--------ELCELFSQ--YGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQK 102 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~--------~L~~~F~~--~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~ 102 (242)
+...+.+|+.+.......+ ++...|.. .+.+..+..-++. +..++|--|++|...+.+++.+.
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3445678888887665554 99999988 5777888888877 77888999999999999999873
No 163
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=38.11 E-value=56 Score=24.20 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=31.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcC
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDS 93 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s 93 (242)
..-+|||+++..+.|.-.+.+-+.++.-.-+-+..+ +.. .||.|-++.+
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~-~~e-qG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT-NTE-SGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC-CCC-CCcEEEecCC
Confidence 346999999999888766666665654333333333 222 3899887764
No 164
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=37.68 E-value=31 Score=26.29 Aligned_cols=37 Identities=16% Similarity=0.455 Sum_probs=22.3
Q ss_pred CCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcC
Q psy15515 55 TTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDS 93 (242)
Q Consensus 55 ~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s 93 (242)
.+.+.|++.|..|..+ +++...++. .+.|+++|+|.+
T Consensus 29 ~~~~~l~~~l~~f~p~-kv~~l~~~~-gh~g~aiv~F~~ 65 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPL-KVKPLYGKQ-GHTGFAIVEFNK 65 (116)
T ss_dssp --SHHHHHHHHH---S-EEEEEEETT-EEEEEEEEE--S
T ss_pred cCHHHHHHHHHhcCCc-eeEECcCCC-CCcEEEEEEECC
Confidence 3558899999999765 455556554 367999999974
No 165
>KOG2891|consensus
Probab=36.08 E-value=44 Score=29.65 Aligned_cols=35 Identities=29% Similarity=0.634 Sum_probs=27.4
Q ss_pred CcEEEEcCCCC------------CCCHHHHHHHhhcCCCeEEEEEee
Q psy15515 43 PKRVFVGGITS------------TTTEDELCELFSQYGIVKQVKIVV 77 (242)
Q Consensus 43 ~~~lfVgnLp~------------~~te~~L~~~F~~~G~i~~v~i~~ 77 (242)
+.+||+.+||- --+++.|+..|+.||.|..|.|..
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 45888888872 145678999999999999887753
No 166
>KOG4213|consensus
Probab=35.18 E-value=36 Score=28.17 Aligned_cols=57 Identities=25% Similarity=0.232 Sum_probs=37.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhh-cCCCeEEEEEeeCCCC--CcccEEEEEEcCHHHHHHHHHH
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFS-QYGIVKQVKIVVDRAG--ISKGYGFITFDSEEEAKRLQKD 103 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~g--~skg~gFV~F~s~e~A~~Al~~ 103 (242)
..+++|.. .+++.|.++.. .-|.+..+.+-+...+ ..+|--||+|.+.+.|.+.++.
T Consensus 110 ~~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 110 KERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 34566654 44444433321 1178888776554444 5678999999999999987754
No 167
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=31.33 E-value=1.2e+02 Score=22.62 Aligned_cols=45 Identities=18% Similarity=0.294 Sum_probs=29.6
Q ss_pred HHHHhhcCCCeEEEEEeeCC--CCC--------------cccEEEEEEcCHHHHHHHHHHc
Q psy15515 60 LCELFSQYGIVKQVKIVVDR--AGI--------------SKGYGFITFDSEEEAKRLQKDS 104 (242)
Q Consensus 60 L~~~F~~~G~i~~v~i~~~~--~g~--------------skg~gFV~F~s~e~A~~Al~~l 104 (242)
--.+|..||.+.-+...-+. .|+ .--|.+|+|.+++..+++.+.+
T Consensus 25 a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 25 AAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 35688999977665544332 333 2348999999999988887654
No 168
>KOG0226|consensus
Probab=31.01 E-value=29 Score=30.31 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=55.8
Q ss_pred CcEEEEcCCCCCCCHHH-H--HHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 43 PKRVFVGGITSTTTEDE-L--CELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~-L--~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
...+|++++-..+..+- | ...|+.|-.....+++++.-+..++++|+.|...+...++-..-+++.++-..|++.-
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 34777888877666654 4 6778888888888888887778899999999887777776655566666666555543
No 169
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=30.75 E-value=30 Score=25.12 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=20.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHH
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCEL 63 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~ 63 (242)
....++|-|.|||...++++|++.
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheee
Confidence 455679999999999999999974
No 170
>KOG4264|consensus
Probab=25.34 E-value=3e+02 Score=26.77 Aligned_cols=11 Identities=36% Similarity=0.259 Sum_probs=5.6
Q ss_pred ccccCCCcccc
Q psy15515 183 VKILLPPGVLL 193 (242)
Q Consensus 183 ~~~~~pP~~~~ 193 (242)
.+.++||++.+
T Consensus 595 ~pg~pPpq~~q 605 (694)
T KOG4264|consen 595 VPGPPPPQVAQ 605 (694)
T ss_pred CCCCCCccccc
Confidence 33445555555
No 171
>PRK10905 cell division protein DamX; Validated
Probab=24.75 E-value=1.5e+02 Score=26.78 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=37.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEE--EEcCHHHHHHHHHHcCC
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFI--TFDSEEEAKRLQKDSDN 106 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV--~F~s~e~A~~Al~~l~~ 106 (242)
...+|-|+.+. +++.|+++-.++|. ....+.... +|+. .|-.+ .|.+.++|++|++.|-.
T Consensus 246 ~~YTLQL~A~S---s~~~l~~fakKlgL-~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 246 SHYTLQLSSSS---NYDNLNGWAKKENL-KNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CceEEEEEecC---CHHHHHHHHHHcCC-CceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCH
Confidence 33466666554 55778887777753 333333322 4432 34433 58999999999998863
No 172
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=24.63 E-value=2.8e+02 Score=26.58 Aligned_cols=51 Identities=24% Similarity=0.205 Sum_probs=36.7
Q ss_pred CCHHHHHHHhh----cCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q psy15515 55 TTEDELCELFS----QYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105 (242)
Q Consensus 55 ~te~~L~~~F~----~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~ 105 (242)
....+|..+|. .+|-|.++.+...+.-+.+...++.|.+.+++..++..+.
T Consensus 201 ~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 201 SPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 34457777664 6788888877665533445677889999999999988764
No 173
>KOG2295|consensus
Probab=21.71 E-value=18 Score=34.92 Aligned_cols=68 Identities=12% Similarity=0.049 Sum_probs=51.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeC
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFK 110 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~ 110 (242)
...||+.|+..+++-++|+.+...+-.+..+.+-.+. ..+...+++|+|+---....|+.+||+..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3479999999999999999999988766666554443 3445668889998766777777777765443
No 174
>KOG1295|consensus
Probab=21.31 E-value=1.2e+02 Score=27.93 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=45.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeeCC---CCCcccEEEEEEcCHHHHHHHHHHcCCCEe
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYG-IVKQVKIVVDR---AGISKGYGFITFDSEEEAKRLQKDSDNIMF 109 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~i~~~~---~g~skg~gFV~F~s~e~A~~Al~~l~~~~i 109 (242)
..++.|.+||...++.+|.+....+- .+....+.... ...-.+.++|.|...++...-.+.++|+.+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 34788899999999998887666543 22222232111 111257889999999998888777887754
No 175
>KOG0156|consensus
Probab=20.74 E-value=1.7e+02 Score=27.94 Aligned_cols=59 Identities=17% Similarity=0.301 Sum_probs=43.0
Q ss_pred EEcCCCCCCC---HHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEE
Q psy15515 47 FVGGITSTTT---EDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRL 114 (242)
Q Consensus 47 fVgnLp~~~t---e~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l 114 (242)
+||||+.-.. ...+.++-.+||.|-.+++-. .-.|...+.+.|++++.. ++..+.+|..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~--------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS--------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC--------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 5788864333 356666667999998777732 236788899999999965 7788888874
No 176
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=20.74 E-value=4e+02 Score=20.54 Aligned_cols=69 Identities=12% Similarity=0.077 Sum_probs=44.8
Q ss_pred EEEEcCCCCC---CCHHHHHHHhhcCC-CeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 45 RVFVGGITST---TTEDELCELFSQYG-IVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 45 ~lfVgnLp~~---~te~~L~~~F~~~G-~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
.|.|+..... .+-..+++.+.+-| .++++.... +-..|.|.+.|+-.+|.+.|....-++..|.+..+.
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~-------~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEN-------DSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeC-------CEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 5777655333 45567778887776 344444322 467899999999999988887554445555555443
No 177
>KOG4365|consensus
Probab=20.63 E-value=14 Score=34.59 Aligned_cols=76 Identities=7% Similarity=-0.067 Sum_probs=53.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
.+.|+..++...++.++.-.|..||.|..+..-... .|-.+-.+||+-.+ .++..+|..+--..+.|..++|..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 356777888999999999999999999887665544 45556677776653 44555665554455667777777655
Done!