Query psy15515
Match_columns 242
No_of_seqs 240 out of 1989
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 23:17:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 1.7E-22 5.7E-27 150.1 11.7 81 41-121 17-98 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 1.9E-21 6.4E-26 147.2 12.4 85 40-124 3-88 (110)
3 2cpz_A CUG triplet repeat RNA- 99.9 1E-20 3.5E-25 143.4 14.2 86 40-125 22-108 (115)
4 2dgo_A Cytotoxic granule-assoc 99.9 2E-20 6.9E-25 141.6 15.5 86 40-125 12-98 (115)
5 2do4_A Squamous cell carcinoma 99.9 1.4E-20 5E-25 138.9 13.7 85 40-124 14-98 (100)
6 2cq0_A Eukaryotic translation 99.8 1.1E-20 3.7E-25 140.4 12.5 88 38-125 10-98 (103)
7 2khc_A Testis-specific RNP-typ 99.8 1.3E-20 4.3E-25 143.4 13.2 82 39-120 36-118 (118)
8 1u6f_A Tcubp1, RNA-binding pro 99.8 4.5E-20 1.5E-24 144.2 16.0 88 39-126 38-126 (139)
9 2do0_A HnRNP M, heterogeneous 99.8 5.5E-20 1.9E-24 138.8 15.5 84 41-124 13-96 (114)
10 3md1_A Nuclear and cytoplasmic 99.8 1.7E-20 5.7E-25 133.6 12.0 80 44-123 2-82 (83)
11 2dnz_A Probable RNA-binding pr 99.8 1.8E-20 6E-25 137.0 12.3 85 41-125 3-88 (95)
12 4f25_A Polyadenylate-binding p 99.8 8.6E-21 3E-25 144.2 10.9 83 42-125 4-86 (115)
13 1whw_A Hypothetical protein ri 99.8 2.5E-20 8.6E-25 137.3 12.6 85 41-125 6-91 (99)
14 2lxi_A RNA-binding protein 10; 99.8 2.5E-21 8.6E-26 141.4 7.0 82 44-125 2-86 (91)
15 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.5E-20 5.3E-25 135.0 11.0 81 42-122 5-86 (87)
16 2dgs_A DAZ-associated protein 99.8 3.1E-20 1E-24 136.9 12.7 86 40-126 7-93 (99)
17 1x5u_A Splicing factor 3B subu 99.8 2.3E-20 7.9E-25 138.9 12.0 86 40-125 12-98 (105)
18 1x5t_A Splicing factor 3B subu 99.8 1.6E-20 5.5E-25 137.5 10.9 86 41-126 3-90 (96)
19 2dnh_A Bruno-like 5, RNA bindi 99.8 3.8E-20 1.3E-24 137.8 12.6 86 41-126 13-101 (105)
20 2e5h_A Zinc finger CCHC-type a 99.8 4E-20 1.4E-24 134.8 11.9 80 41-120 14-94 (94)
21 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.7E-20 9.4E-25 137.8 11.1 84 42-125 11-95 (102)
22 2dnm_A SRP46 splicing factor; 99.8 2.5E-20 8.6E-25 138.4 10.6 86 40-125 10-96 (103)
23 2fy1_A RNA-binding motif prote 99.8 3.7E-20 1.3E-24 141.0 11.8 85 41-125 5-89 (116)
24 2cqd_A RNA-binding region cont 99.8 1.1E-19 3.8E-24 137.8 14.4 85 39-124 13-98 (116)
25 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.4E-20 8.3E-25 133.4 10.1 80 41-120 5-85 (85)
26 2d9p_A Polyadenylate-binding p 99.8 4.8E-20 1.7E-24 136.8 12.0 86 39-125 11-96 (103)
27 2x1f_A MRNA 3'-END-processing 99.8 3.7E-20 1.3E-24 135.8 11.2 82 43-124 2-84 (96)
28 2cqc_A Arginine/serine-rich sp 99.8 4.6E-20 1.6E-24 134.6 11.6 82 40-121 12-94 (95)
29 2dhg_A TRNA selenocysteine ass 99.8 4.1E-20 1.4E-24 137.3 11.3 87 41-127 7-95 (104)
30 3p5t_L Cleavage and polyadenyl 99.8 4.8E-21 1.6E-25 139.2 5.9 81 44-124 2-85 (90)
31 2lkz_A RNA-binding protein 5; 99.8 1E-20 3.5E-25 139.5 7.8 81 41-121 7-94 (95)
32 2cq3_A RNA-binding protein 9; 99.8 1.7E-19 5.9E-24 133.8 14.5 85 40-125 12-96 (103)
33 2kxn_B Transformer-2 protein h 99.8 2.4E-20 8.2E-25 144.9 10.0 86 39-124 42-128 (129)
34 1x5s_A Cold-inducible RNA-bind 99.8 3.4E-20 1.2E-24 137.3 10.4 85 41-125 10-95 (102)
35 1x4h_A RNA-binding protein 28; 99.8 8.5E-20 2.9E-24 137.0 12.7 86 40-125 12-104 (111)
36 2dng_A Eukaryotic translation 99.8 1E-19 3.6E-24 135.1 13.1 84 40-125 12-96 (103)
37 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.5E-19 5.1E-24 134.2 13.8 86 40-126 12-97 (103)
38 2cph_A RNA binding motif prote 99.8 6.6E-20 2.3E-24 136.8 11.9 86 40-125 12-100 (107)
39 2cpe_A RNA-binding protein EWS 99.8 6.2E-20 2.1E-24 138.5 11.9 87 39-125 11-106 (113)
40 2dgp_A Bruno-like 4, RNA bindi 99.8 4E-20 1.4E-24 137.9 10.3 87 39-125 9-99 (106)
41 2ywk_A Putative RNA-binding pr 99.8 4.8E-20 1.6E-24 134.7 10.5 82 40-121 13-94 (95)
42 1p27_B RNA-binding protein 8A; 99.8 4.5E-20 1.5E-24 137.6 10.5 84 40-123 20-104 (106)
43 2cpf_A RNA binding motif prote 99.8 9.4E-20 3.2E-24 133.9 11.7 85 41-125 3-91 (98)
44 1oo0_B CG8781-PA, drosophila Y 99.8 6.2E-20 2.1E-24 137.8 10.9 85 40-124 23-108 (110)
45 1wi8_A EIF-4B, eukaryotic tran 99.8 1.2E-19 4E-24 135.1 12.1 84 41-126 13-98 (104)
46 3n9u_C Cleavage and polyadenyl 99.8 4.7E-20 1.6E-24 147.8 10.7 81 42-122 54-137 (156)
47 2la6_A RNA-binding protein FUS 99.8 6.8E-20 2.3E-24 135.2 10.7 81 40-120 10-99 (99)
48 2dh8_A DAZ-associated protein 99.8 7.7E-20 2.6E-24 136.2 11.1 85 40-125 13-98 (105)
49 1x4b_A Heterogeneous nuclear r 99.8 3.5E-20 1.2E-24 140.6 9.3 85 41-126 25-110 (116)
50 2jrs_A RNA-binding protein 39; 99.8 6.4E-20 2.2E-24 138.0 10.6 85 39-123 22-107 (108)
51 4a8x_A RNA-binding protein wit 99.8 7E-20 2.4E-24 131.7 9.9 82 42-123 3-86 (88)
52 1x4a_A Splicing factor, argini 99.8 5.2E-19 1.8E-23 132.6 15.0 84 40-125 19-102 (109)
53 2div_A TRNA selenocysteine ass 99.8 7.5E-20 2.6E-24 134.7 10.1 82 42-123 8-95 (99)
54 3s7r_A Heterogeneous nuclear r 99.8 2E-19 6.7E-24 129.4 11.7 80 39-119 7-87 (87)
55 2cq4_A RNA binding motif prote 99.8 4.9E-20 1.7E-24 139.4 8.8 82 41-123 23-105 (114)
56 2dgv_A HnRNP M, heterogeneous 99.8 1.4E-19 4.7E-24 131.4 10.7 83 41-124 6-88 (92)
57 3ns6_A Eukaryotic translation 99.8 1.4E-20 4.7E-25 139.6 5.4 82 42-123 5-94 (100)
58 3ucg_A Polyadenylate-binding p 99.8 1.5E-19 5.2E-24 130.3 10.8 81 42-123 5-86 (89)
59 2dgw_A Probable RNA-binding pr 99.8 3.2E-19 1.1E-23 129.4 12.4 82 41-124 8-89 (91)
60 3ulh_A THO complex subunit 4; 99.8 2.2E-19 7.4E-24 134.1 11.8 81 40-120 26-106 (107)
61 2cqp_A RNA-binding protein 12; 99.8 7.9E-20 2.7E-24 134.3 9.1 83 41-123 13-96 (98)
62 2dgx_A KIAA0430 protein; RRM d 99.8 1.9E-19 6.4E-24 132.3 11.0 81 42-124 8-92 (96)
63 2cqg_A TDP-43, TAR DNA-binding 99.8 6E-19 2E-23 130.9 13.6 85 39-125 11-96 (103)
64 2rs2_A Musashi-1, RNA-binding 99.8 2E-19 7E-24 135.4 11.1 85 39-124 21-106 (109)
65 2m2b_A RNA-binding protein 10; 99.8 6.3E-20 2.1E-24 142.5 8.4 84 40-124 20-110 (131)
66 2err_A Ataxin-2-binding protei 99.8 1.4E-19 4.9E-24 136.2 9.8 84 38-122 24-107 (109)
67 1h2v_Z 20 kDa nuclear CAP bind 99.8 4.6E-19 1.6E-23 141.3 13.1 85 40-124 36-121 (156)
68 3ex7_B RNA-binding protein 8A; 99.8 1.9E-19 6.4E-24 138.4 10.1 86 40-125 19-105 (126)
69 1s79_A Lupus LA protein; RRM, 99.8 9.9E-20 3.4E-24 136.1 8.0 81 40-121 8-88 (103)
70 2kt5_A RNA and export factor-b 99.8 6.1E-19 2.1E-23 135.3 12.5 86 39-124 31-116 (124)
71 2ek1_A RNA-binding protein 12; 99.8 1.1E-19 3.7E-24 132.8 7.4 80 42-121 14-94 (95)
72 2cpi_A CCR4-NOT transcription 99.8 3.9E-19 1.3E-23 134.1 10.7 84 40-123 12-102 (111)
73 2fc9_A NCL protein; structure 99.8 8E-19 2.7E-23 129.7 12.2 82 40-124 12-93 (101)
74 1p1t_A Cleavage stimulation fa 99.8 1.2E-19 4.2E-24 134.6 7.8 83 42-124 7-90 (104)
75 1x5o_A RNA binding motif, sing 99.8 5.2E-19 1.8E-23 133.6 11.3 84 39-122 21-112 (114)
76 2jwn_A Embryonic polyadenylate 99.8 4.9E-19 1.7E-23 135.6 11.2 81 43-124 36-117 (124)
77 2kn4_A Immunoglobulin G-bindin 99.8 5E-19 1.7E-23 141.0 11.6 85 40-124 67-152 (158)
78 1x4e_A RNA binding motif, sing 99.8 5.3E-20 1.8E-24 131.8 5.1 80 41-120 3-83 (85)
79 2j76_E EIF-4B, EIF4B, eukaryot 99.8 9.3E-20 3.2E-24 135.0 6.6 82 40-123 16-99 (100)
80 1sjq_A Polypyrimidine tract-bi 99.8 4.3E-19 1.5E-23 133.1 10.1 81 40-125 13-95 (105)
81 2dis_A Unnamed protein product 99.8 4.8E-19 1.6E-23 132.6 10.4 85 41-125 6-95 (109)
82 2mss_A Protein (musashi1); RNA 99.8 9.1E-20 3.1E-24 127.5 5.9 74 45-119 1-75 (75)
83 2nlw_A Eukaryotic translation 99.8 4.5E-19 1.5E-23 132.5 10.0 88 36-124 8-102 (105)
84 2cpy_A RNA-binding protein 12; 99.8 2E-19 6.9E-24 136.3 8.0 83 40-123 12-95 (114)
85 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 7.4E-19 2.5E-23 136.9 11.4 80 40-119 60-140 (140)
86 3q2s_C Cleavage and polyadenyl 99.8 1.5E-19 5.2E-24 153.4 8.0 81 42-122 67-150 (229)
87 1wez_A HnRNP H', FTP-3, hetero 99.8 4.2E-19 1.4E-23 132.3 9.2 82 41-124 13-94 (102)
88 1wg5_A Heterogeneous nuclear r 99.8 9.8E-19 3.4E-23 130.4 10.7 82 41-123 13-95 (104)
89 2fc8_A NCL protein; structure 99.8 1.2E-18 4.2E-23 128.8 11.2 83 40-125 12-95 (102)
90 2dnn_A RNA-binding protein 12; 99.8 5.6E-19 1.9E-23 133.4 9.3 79 42-122 15-93 (109)
91 2lea_A Serine/arginine-rich sp 99.8 2.2E-19 7.4E-24 140.4 6.8 88 38-125 42-130 (135)
92 2db1_A Heterogeneous nuclear r 99.8 3.6E-19 1.2E-23 135.9 7.8 82 41-123 15-99 (118)
93 2ki2_A SS-DNA binding protein 99.8 6.5E-20 2.2E-24 132.8 3.3 80 44-124 2-82 (90)
94 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.6E-19 5.6E-24 126.6 5.3 75 44-119 1-76 (77)
95 2dnq_A RNA-binding protein 4B; 99.8 2.1E-18 7.3E-23 124.9 11.3 78 41-125 6-83 (90)
96 1x4c_A Splicing factor, argini 99.8 4.2E-18 1.4E-22 127.7 13.2 79 41-125 13-96 (108)
97 1x4d_A Matrin 3; structural ge 99.8 9.9E-19 3.4E-23 130.6 9.2 79 42-125 14-95 (102)
98 1wel_A RNA-binding protein 12; 99.8 3.2E-19 1.1E-23 137.1 6.5 82 41-123 23-105 (124)
99 2cq1_A PTB-like protein L; RRM 99.8 5.2E-18 1.8E-22 126.4 12.8 80 41-125 13-94 (101)
100 2hgl_A HNRPF protein, heteroge 99.8 4.1E-19 1.4E-23 139.3 7.2 82 40-122 41-125 (136)
101 1x4g_A Nucleolysin TIAR; struc 99.8 3.2E-18 1.1E-22 128.4 11.6 80 41-125 23-102 (109)
102 2dgt_A RNA-binding protein 30; 99.8 5.9E-18 2E-22 123.0 12.6 79 40-125 7-85 (92)
103 2wbr_A GW182, gawky, LD47780P; 99.8 1.3E-18 4.3E-23 125.9 8.6 73 43-120 7-79 (89)
104 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.8E-18 9.7E-23 138.1 11.7 86 40-125 69-155 (165)
105 2la4_A Nuclear and cytoplasmic 99.8 1.5E-18 5.3E-23 128.2 9.3 77 41-122 25-101 (101)
106 2dgu_A Heterogeneous nuclear r 99.8 9.4E-18 3.2E-22 124.5 13.5 78 42-126 10-87 (103)
107 2ytc_A PRE-mRNA-splicing facto 99.8 3.8E-18 1.3E-22 122.0 10.9 76 40-120 9-85 (85)
108 2jvr_A Nucleolar protein 3; RN 99.8 1.3E-18 4.6E-23 131.8 8.6 79 42-123 27-106 (111)
109 2dnp_A RNA-binding protein 14; 99.8 5.5E-18 1.9E-22 122.7 11.2 78 40-124 6-83 (90)
110 2xs2_A Deleted in azoospermia- 99.8 8E-19 2.7E-23 129.9 6.8 84 40-125 6-89 (102)
111 2ad9_A Polypyrimidine tract-bi 99.8 3.8E-18 1.3E-22 130.8 10.6 81 41-126 29-111 (119)
112 1why_A Hypothetical protein ri 99.8 3.7E-18 1.3E-22 125.3 10.1 78 42-124 16-95 (97)
113 1fj7_A Nucleolin RBD1, protein 99.8 1.7E-19 5.7E-24 133.4 2.9 83 41-125 15-98 (101)
114 2e5j_A Methenyltetrahydrofolat 99.8 2.6E-18 8.9E-23 126.2 9.3 81 40-124 16-96 (97)
115 2cpx_A Hypothetical protein FL 99.8 8.1E-19 2.8E-23 132.6 6.6 85 41-125 23-108 (115)
116 2lcw_A RNA-binding protein FUS 99.6 5.6E-20 1.9E-24 139.5 0.0 87 40-126 4-99 (116)
117 2krb_A Eukaryotic translation 99.8 7.7E-19 2.6E-23 124.9 5.8 73 44-117 2-81 (81)
118 2a3j_A U1 small nuclear ribonu 99.8 2.8E-18 9.5E-23 133.0 9.4 81 42-124 28-112 (127)
119 3r27_A HnRNP L, heterogeneous 99.8 5.3E-18 1.8E-22 126.0 10.5 78 41-123 19-98 (100)
120 2jvo_A Nucleolar protein 3; nu 99.8 4.9E-18 1.7E-22 127.7 10.3 79 39-124 27-105 (108)
121 1wex_A Hypothetical protein (r 99.8 7.9E-18 2.7E-22 126.0 11.3 79 42-125 14-94 (104)
122 1nu4_A U1A RNA binding domain; 99.8 1.8E-18 6E-23 126.7 7.6 82 41-124 6-91 (97)
123 2cpj_A Non-POU domain-containi 99.7 5.9E-18 2E-22 124.7 10.3 79 41-124 13-91 (99)
124 2lmi_A GRSF-1, G-rich sequence 99.7 5.4E-19 1.8E-23 132.5 4.8 82 41-123 9-93 (107)
125 1wf1_A RNA-binding protein RAL 99.7 7.8E-18 2.7E-22 126.4 11.1 76 42-124 26-102 (110)
126 1fjc_A Nucleolin RBD2, protein 99.7 2.7E-18 9.1E-23 125.6 8.2 80 41-124 14-93 (96)
127 2cpd_A Apobec-1 stimulating pr 99.7 2.5E-17 8.6E-22 121.3 13.2 77 41-124 13-91 (99)
128 2xnq_A Nuclear polyadenylated 99.7 1.3E-17 4.4E-22 122.9 11.3 77 40-123 19-96 (97)
129 1iqt_A AUF1, heterogeneous nuc 99.7 5.7E-19 1.9E-23 123.3 3.8 74 45-119 1-75 (75)
130 2hvz_A Splicing factor, argini 99.7 4.1E-18 1.4E-22 125.9 8.6 77 44-124 1-77 (101)
131 2cqh_A IGF-II mRNA-binding pro 99.7 7.2E-18 2.5E-22 122.7 9.4 79 41-125 6-86 (93)
132 1x4f_A Matrin 3; structural ge 99.7 1.3E-17 4.5E-22 126.5 10.6 79 42-125 24-105 (112)
133 2dha_A FLJ20171 protein; RRM d 99.7 1.9E-18 6.6E-23 133.2 6.1 80 42-122 22-105 (123)
134 1x5p_A Negative elongation fac 99.7 4.5E-17 1.5E-21 119.6 13.1 78 41-125 13-90 (97)
135 4f02_A Polyadenylate-binding p 99.7 1.5E-17 5.2E-22 138.8 11.7 82 42-123 14-96 (213)
136 3lqv_A PRE-mRNA branch site pr 99.7 1.3E-17 4.4E-22 126.0 9.8 80 42-123 7-86 (115)
137 3md3_A Nuclear and cytoplasmic 99.7 3.7E-17 1.3E-21 129.4 12.9 82 40-121 84-166 (166)
138 2hgn_A Heterogeneous nuclear r 99.7 1.1E-18 3.8E-23 137.3 4.0 82 41-124 44-125 (139)
139 1wg1_A KIAA1579 protein, homol 99.7 1.1E-17 3.9E-22 120.7 8.8 76 42-123 4-79 (88)
140 2e5g_A U6 snRNA-specific termi 99.7 4.2E-17 1.4E-21 119.0 11.7 77 42-124 7-84 (94)
141 1fxl_A Paraneoplastic encephal 99.7 3.9E-17 1.3E-21 129.4 12.1 81 43-123 2-83 (167)
142 2f3j_A RNA and export factor b 99.7 1.3E-17 4.5E-22 136.1 9.5 83 41-123 86-168 (177)
143 2i2y_A Fusion protein consists 99.7 1.3E-17 4.6E-22 131.9 9.2 80 40-123 70-149 (150)
144 2hgm_A HNRPF protein, heteroge 99.7 5.3E-18 1.8E-22 131.3 6.3 80 41-122 40-121 (126)
145 1whx_A Hypothetical protein ri 99.7 7.6E-18 2.6E-22 127.2 7.1 77 42-123 9-85 (111)
146 3pgw_A U1-A; protein-RNA compl 99.7 1.8E-16 6.2E-21 137.0 16.7 82 40-123 6-91 (282)
147 2kvi_A Nuclear polyadenylated 99.7 1.2E-17 4.1E-22 122.5 7.9 78 41-125 8-86 (96)
148 1b7f_A Protein (SXL-lethal pro 99.7 3.1E-17 1.1E-21 130.4 10.5 81 43-123 3-84 (168)
149 3md3_A Nuclear and cytoplasmic 99.7 5.1E-17 1.8E-21 128.6 11.0 80 44-123 1-80 (166)
150 2qfj_A FBP-interacting repress 99.7 5.9E-17 2E-21 134.1 11.7 82 42-123 124-206 (216)
151 2g4b_A Splicing factor U2AF 65 99.7 5.8E-17 2E-21 129.5 11.2 80 41-120 92-172 (172)
152 2e44_A Insulin-like growth fac 99.7 2.7E-17 9.1E-22 120.3 8.4 79 42-123 14-93 (96)
153 2j8a_A Histone-lysine N-methyl 99.7 2.3E-17 7.7E-22 127.3 8.3 78 44-121 3-95 (136)
154 4f02_A Polyadenylate-binding p 99.7 3.5E-17 1.2E-21 136.6 10.1 81 43-124 103-183 (213)
155 2yh0_A Splicing factor U2AF 65 99.7 7.7E-17 2.6E-21 131.6 11.9 85 40-124 111-196 (198)
156 2cq2_A Hypothetical protein LO 99.7 4.1E-17 1.4E-21 124.0 9.4 77 42-123 24-107 (114)
157 1sjr_A Polypyrimidine tract-bi 99.7 4.4E-17 1.5E-21 131.2 9.9 79 42-123 45-125 (164)
158 3egn_A RNA-binding protein 40; 99.7 2.2E-17 7.6E-22 129.6 7.6 85 40-124 42-132 (143)
159 3d2w_A TAR DNA-binding protein 99.7 7.4E-17 2.5E-21 117.1 9.7 77 40-124 8-86 (89)
160 1l3k_A Heterogeneous nuclear r 99.7 8.7E-17 3E-21 131.1 11.3 85 42-127 103-188 (196)
161 3pgw_S U1-70K; protein-RNA com 99.7 2.2E-16 7.6E-21 145.7 15.2 84 41-124 100-184 (437)
162 1l3k_A Heterogeneous nuclear r 99.7 8.8E-17 3E-21 131.1 11.0 83 40-123 10-93 (196)
163 3zzy_A Polypyrimidine tract-bi 99.7 1.3E-16 4.6E-21 123.8 11.2 76 44-123 29-107 (130)
164 2cjk_A Nuclear polyadenylated 99.7 3E-17 1E-21 130.6 7.2 79 43-122 87-166 (167)
165 3beg_B Splicing factor, argini 99.7 5.4E-17 1.8E-21 123.2 8.0 77 42-124 15-96 (115)
166 1wf0_A TDP-43, TAR DNA-binding 99.7 6.3E-17 2.1E-21 116.6 7.2 78 42-125 4-81 (88)
167 1b7f_A Protein (SXL-lethal pro 99.7 2.1E-16 7.3E-21 125.5 11.0 83 37-119 83-168 (168)
168 2dnl_A Cytoplasmic polyadenyla 99.7 1.2E-16 4.2E-21 120.8 8.8 79 41-122 6-88 (114)
169 3tyt_A Heterogeneous nuclear r 99.7 2.1E-16 7E-21 131.8 10.9 78 42-123 3-81 (205)
170 2e5i_A Heterogeneous nuclear r 99.7 3.1E-16 1.1E-20 120.9 10.8 74 45-123 27-103 (124)
171 2qfj_A FBP-interacting repress 99.7 1.4E-16 4.6E-21 131.9 9.4 80 43-122 28-108 (216)
172 3nmr_A Cugbp ELAV-like family 99.7 2.1E-16 7.2E-21 126.2 10.0 80 41-120 93-175 (175)
173 1fxl_A Paraneoplastic encephal 99.7 2.8E-16 9.6E-21 124.4 10.0 81 39-119 84-167 (167)
174 2hzc_A Splicing factor U2AF 65 99.7 2.4E-16 8.1E-21 112.9 8.3 72 41-118 4-86 (87)
175 2diu_A KIAA0430 protein; struc 99.7 5.2E-16 1.8E-20 113.4 9.7 74 45-127 11-89 (96)
176 2voo_A Lupus LA protein; RNA-b 99.7 5.2E-16 1.8E-20 128.3 11.0 80 42-122 108-187 (193)
177 2bz2_A Negative elongation fac 99.7 3.6E-16 1.2E-20 119.9 9.0 77 41-124 37-113 (121)
178 3nmr_A Cugbp ELAV-like family 99.6 6.3E-16 2.1E-20 123.5 9.4 82 42-123 2-89 (175)
179 2cjk_A Nuclear polyadenylated 99.6 3.7E-16 1.3E-20 124.2 7.8 79 42-122 2-81 (167)
180 2pe8_A Splicing factor 45; RRM 99.6 1.9E-15 6.6E-20 113.1 11.0 81 42-122 7-94 (105)
181 1fje_B Nucleolin RBD12, protei 99.6 9.3E-16 3.2E-20 123.1 9.8 78 41-122 97-174 (175)
182 3smz_A Protein raver-1, ribonu 99.6 2E-15 6.8E-20 130.6 11.3 84 41-124 182-266 (284)
183 3pgw_A U1-A; protein-RNA compl 99.6 6.6E-15 2.2E-19 127.1 14.5 78 40-121 204-282 (282)
184 3u1l_A PRE-mRNA-splicing facto 99.6 9.9E-16 3.4E-20 130.6 8.1 79 40-123 131-230 (240)
185 2ghp_A U4/U6 snRNA-associated 99.6 2.2E-15 7.6E-20 130.7 9.9 81 41-122 208-291 (292)
186 2adc_A Polypyrimidine tract-bi 99.6 2.1E-15 7.1E-20 127.1 8.6 84 36-123 27-111 (229)
187 3smz_A Protein raver-1, ribonu 99.6 6.6E-15 2.3E-19 127.2 11.7 82 42-123 94-176 (284)
188 1qm9_A Polypyrimidine tract-bi 99.6 7E-15 2.4E-19 120.4 10.3 78 42-123 2-80 (198)
189 1jmt_A Splicing factor U2AF 35 99.6 1.1E-15 3.9E-20 114.1 4.9 72 48-119 20-103 (104)
190 2dit_A HIV TAT specific factor 99.6 2.5E-14 8.5E-19 107.8 11.9 81 42-125 14-105 (112)
191 1fje_B Nucleolin RBD12, protei 99.6 9.2E-16 3.2E-20 123.1 3.5 83 40-123 10-92 (175)
192 2ghp_A U4/U6 snRNA-associated 99.5 1.3E-14 4.6E-19 125.8 9.0 83 42-124 116-199 (292)
193 3tyt_A Heterogeneous nuclear r 99.5 1.1E-14 3.7E-19 121.3 7.4 77 42-119 122-204 (205)
194 3sde_A Paraspeckle component 1 99.5 2.5E-14 8.4E-19 122.9 9.6 82 43-124 96-181 (261)
195 2adc_A Polypyrimidine tract-bi 99.5 3E-14 1E-18 120.0 9.6 77 42-122 150-228 (229)
196 1qm9_A Polypyrimidine tract-bi 99.5 1.9E-14 6.6E-19 117.8 7.6 77 42-122 119-197 (198)
197 3v4m_A Splicing factor U2AF 65 99.5 5.9E-14 2E-18 105.0 9.2 81 42-122 4-97 (105)
198 3sde_A Paraspeckle component 1 99.5 5.6E-14 1.9E-18 120.6 9.9 76 41-121 20-95 (261)
199 2yh0_A Splicing factor U2AF 65 99.5 2.1E-13 7.3E-18 111.0 12.5 77 42-124 3-90 (198)
200 2g4b_A Splicing factor U2AF 65 99.5 8.1E-14 2.8E-18 111.1 9.7 75 42-122 3-88 (172)
201 3ue2_A Poly(U)-binding-splicin 99.5 2.5E-13 8.7E-18 103.7 9.4 80 43-122 20-109 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 6.9E-13 2.4E-17 98.4 11.1 66 53-124 27-92 (100)
203 3tht_A Alkylated DNA repair pr 99.4 6.4E-13 2.2E-17 118.8 9.2 75 41-120 16-97 (345)
204 3s6e_A RNA-binding protein 39; 99.3 2.5E-12 8.7E-17 97.5 6.9 77 43-122 7-93 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.1 1.7E-10 5.9E-15 83.4 8.0 71 44-122 8-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.0 6.2E-10 2.1E-14 85.0 8.2 73 42-119 17-93 (121)
207 3dxb_A Thioredoxin N-terminall 99.0 6.8E-10 2.3E-14 92.7 8.1 68 55-122 141-213 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.9 2.4E-09 8.2E-14 77.8 6.2 69 44-120 16-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.5 5.3E-07 1.8E-11 66.9 9.3 74 40-118 18-96 (117)
210 1wey_A Calcipressin 1; structu 97.9 6.4E-05 2.2E-09 55.3 8.9 78 40-122 2-84 (104)
211 2dhx_A Poly (ADP-ribose) polym 97.8 0.00037 1.3E-08 51.1 11.6 77 41-125 6-87 (104)
212 1uw4_A UPF3X; nonsense mediate 97.3 0.0017 5.6E-08 46.7 8.6 67 44-110 2-71 (91)
213 1whv_A Poly(A)-specific ribonu 97.0 0.0027 9.4E-08 46.0 7.3 53 44-104 17-69 (100)
214 1wwh_A Nucleoporin 35, nucleop 96.9 0.0045 1.5E-07 46.5 8.5 73 41-120 22-95 (119)
215 3ctr_A Poly(A)-specific ribonu 96.8 0.002 6.9E-08 46.8 5.2 54 45-105 7-60 (101)
216 2i2y_A Fusion protein consists 96.4 0.00098 3.4E-08 51.5 1.8 41 81-122 10-51 (150)
217 3p3d_A Nucleoporin 53; structu 96.1 0.0044 1.5E-07 47.3 3.8 77 43-121 7-98 (132)
218 2kn4_A Immunoglobulin G-bindin 96.0 0.0042 1.4E-07 48.2 3.3 36 72-108 2-37 (158)
219 2l08_A Regulator of nonsense t 95.9 0.0075 2.6E-07 43.7 3.8 68 43-110 9-79 (97)
220 3pq1_A Poly(A) RNA polymerase; 95.4 0.0071 2.4E-07 55.7 2.9 55 44-103 54-108 (464)
221 3d45_A Poly(A)-specific ribonu 85.2 2.5 8.4E-05 39.2 7.9 55 43-105 440-494 (507)
222 2g0c_A ATP-dependent RNA helic 81.5 2.3 7.8E-05 28.4 4.6 68 45-120 2-75 (76)
223 4eyt_A Telomerase associated p 51.6 60 0.002 22.8 7.1 71 42-119 11-88 (129)
224 3ts2_A Protein LIN-28 homolog 39.9 4.4 0.00015 31.1 -0.8 28 58-92 2-29 (148)
225 2okq_A Hypothetical protein YB 29.9 1E+02 0.0035 23.3 5.3 43 61-103 51-109 (141)
226 3fry_A Probable copper-exporti 28.8 1.1E+02 0.0037 19.1 5.0 54 44-103 7-60 (73)
227 4e8u_A Putative uncharacterize 28.6 1.2E+02 0.004 23.8 5.7 37 55-93 33-71 (172)
228 3mfb_A Uncharacterized protein 27.7 87 0.003 24.1 4.8 35 55-89 3-41 (157)
229 3aqq_A Calcium-regulated heat 27.6 9.8 0.00033 29.3 -0.7 11 83-93 73-83 (147)
230 4bby_A Alkyldihydroxyacetoneph 26.0 58 0.002 30.8 4.3 55 50-104 350-408 (658)
231 2lfv_A Protein DAMX; cell divi 30.7 15 0.00053 26.4 0.0 52 54-107 33-87 (106)
232 1xn9_A 30S ribosomal protein S 24.4 1.1E+02 0.0037 21.7 4.5 47 53-100 28-80 (101)
233 2v94_A RPS24, 30S ribosomal pr 23.9 1.3E+02 0.0046 21.5 4.9 45 54-99 38-88 (107)
234 1ywx_A 30S ribosomal protein S 23.2 1.2E+02 0.0043 21.5 4.6 46 53-99 28-79 (102)
235 3h7h_B Transcription elongatio 20.3 1.5E+02 0.0051 21.1 4.6 35 69-107 40-74 (106)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=150.06 Aligned_cols=81 Identities=28% Similarity=0.486 Sum_probs=77.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
.+.++|||+|||.++++++|+++|++||.|.++++++|+ +|+++|||||+|.+.++|++|++.|||..|+|++|+|.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 356799999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cc
Q psy15515 120 IK 121 (242)
Q Consensus 120 ~~ 121 (242)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=147.16 Aligned_cols=85 Identities=21% Similarity=0.237 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
+...++|||+||++++++++|+++|++||.|++++|++|+ +|+++|||||+|++.++|++|++.||+.+|+|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456799999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred cccCCC
Q psy15515 119 AIKKQG 124 (242)
Q Consensus 119 a~~~~~ 124 (242)
+..+..
T Consensus 83 a~~~~~ 88 (110)
T 3s8s_A 83 DIKGQQ 88 (110)
T ss_dssp CSTTHH
T ss_pred CCCCcH
Confidence 976643
No 3
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=1e-20 Score=143.36 Aligned_cols=86 Identities=20% Similarity=0.382 Sum_probs=80.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
+...++|||+||++++++++|+++|++||.|++|+|+.++ +|+++|||||+|.+.++|++|++.||+..|+|++|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy15515 119 AIKKQGF 125 (242)
Q Consensus 119 a~~~~~~ 125 (242)
++++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9987653
No 4
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=2e-20 Score=141.59 Aligned_cols=86 Identities=24% Similarity=0.424 Sum_probs=81.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
....++|||+||++++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4466799999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy15515 119 AIKKQGF 125 (242)
Q Consensus 119 a~~~~~~ 125 (242)
++.+...
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9987654
No 5
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=138.94 Aligned_cols=85 Identities=25% Similarity=0.493 Sum_probs=80.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
+...++|||+|||.++++++|+++|++||.|.+++++.+++|+++|||||+|.+.++|++|++.||+..|+|++|+|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q psy15515 120 IKKQG 124 (242)
Q Consensus 120 ~~~~~ 124 (242)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87754
No 6
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=140.36 Aligned_cols=88 Identities=25% Similarity=0.384 Sum_probs=82.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEE
Q psy15515 38 YGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNI 116 (242)
Q Consensus 38 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V 116 (242)
......++|||+|||+++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|++|++.||+..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345567899999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred eecccCCCC
Q psy15515 117 APAIKKQGF 125 (242)
Q Consensus 117 ~~a~~~~~~ 125 (242)
.+++++...
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999987654
No 7
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.85 E-value=1.3e-20 Score=143.35 Aligned_cols=82 Identities=23% Similarity=0.404 Sum_probs=77.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
.+...++|||+||++++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|++|++.||+..|+|++|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred ecc
Q psy15515 118 PAI 120 (242)
Q Consensus 118 ~a~ 120 (242)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 975
No 8
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.85 E-value=4.5e-20 Score=144.19 Aligned_cols=88 Identities=33% Similarity=0.487 Sum_probs=82.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
.+...++|||+||+.++++++|+++|++||.|++|+|+.++ +|+++|||||+|.+.++|++|++.||+..|+|++|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34566899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecccCCCCC
Q psy15515 118 PAIKKQGFT 126 (242)
Q Consensus 118 ~a~~~~~~~ 126 (242)
+++.+....
T Consensus 118 ~a~~~~~~~ 126 (139)
T 1u6f_A 118 LAASGHQRP 126 (139)
T ss_dssp ESSCCCCCC
T ss_pred ECCCCCCCC
Confidence 999876543
No 9
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=5.5e-20 Score=138.85 Aligned_cols=84 Identities=23% Similarity=0.335 Sum_probs=79.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...++|||+||++++++++|+++|++||.|++++|+.+++|+++|||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q psy15515 121 KKQG 124 (242)
Q Consensus 121 ~~~~ 124 (242)
....
T Consensus 93 ~~~~ 96 (114)
T 2do0_A 93 RALP 96 (114)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6544
No 10
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=1.7e-20 Score=133.64 Aligned_cols=80 Identities=24% Similarity=0.430 Sum_probs=77.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccC
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKK 122 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~ 122 (242)
.+|||+|||.++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|++|++.|||..++|++|+|.+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 589999999999999999999999999999999997 8999999999999999999999999999999999999999876
Q ss_pred C
Q psy15515 123 Q 123 (242)
Q Consensus 123 ~ 123 (242)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 11
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=136.97 Aligned_cols=85 Identities=26% Similarity=0.476 Sum_probs=80.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...++|||+||+.++++++|+++|++||.|.++++..++ +++++|||||+|.+.++|++|++.||+..|+|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 346799999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy15515 120 IKKQGF 125 (242)
Q Consensus 120 ~~~~~~ 125 (242)
+.+...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 887654
No 12
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=8.6e-21 Score=144.21 Aligned_cols=83 Identities=22% Similarity=0.495 Sum_probs=75.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
..++|||+|||+++++++|+++|++||.|.+|+|+.|+ +.+||||||+|.+.++|++||+.||+..|+|++|+|.++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 35689999999999999999999999999999999986 34799999999999999999999999999999999999987
Q ss_pred CCCC
Q psy15515 122 KQGF 125 (242)
Q Consensus 122 ~~~~ 125 (242)
+...
T Consensus 83 ~~~~ 86 (115)
T 4f25_A 83 RKER 86 (115)
T ss_dssp CCC-
T ss_pred cccc
Confidence 6543
No 13
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.5e-20 Score=137.28 Aligned_cols=85 Identities=28% Similarity=0.498 Sum_probs=80.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...++|||+|||+++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|++|++.||+..|+|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456799999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy15515 120 IKKQGF 125 (242)
Q Consensus 120 ~~~~~~ 125 (242)
+.+...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987653
No 14
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=2.5e-21 Score=141.37 Aligned_cols=82 Identities=17% Similarity=0.384 Sum_probs=76.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcC-CCEeCCeEEEEeecc
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYG-IVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSD-NIMFKEKRLNIAPAI 120 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~-~~~i~G~~l~V~~a~ 120 (242)
++|||+|||.+++|++|+++|++|| .|.+|+|++|+ +|++||||||+|.+.++|++|++.++ +..++|++|+|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 89999999998 89999999999999999999999874 567999999999998
Q ss_pred cCCCC
Q psy15515 121 KKQGF 125 (242)
Q Consensus 121 ~~~~~ 125 (242)
++...
T Consensus 82 ~~~~~ 86 (91)
T 2lxi_A 82 PKPKI 86 (91)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87543
No 15
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=134.98 Aligned_cols=81 Identities=25% Similarity=0.456 Sum_probs=76.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
..++|||+||+.++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|++|++.||+..++|++|+|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45799999999999999999999999999999999997 89999999999999999999999999999999999999998
Q ss_pred cC
Q psy15515 121 KK 122 (242)
Q Consensus 121 ~~ 122 (242)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 65
No 16
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-20 Score=136.94 Aligned_cols=86 Identities=27% Similarity=0.502 Sum_probs=79.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
+...++|||+||+.++++++|+++|++||.|.+++|+.++ +|+++|||||+|.+.++|++|++ ||+..|+|++|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3456799999999999999999999999999999999998 89999999999999999999998 999999999999999
Q ss_pred cccCCCCC
Q psy15515 119 AIKKQGFT 126 (242)
Q Consensus 119 a~~~~~~~ 126 (242)
++++....
T Consensus 86 a~~~~~~~ 93 (99)
T 2dgs_A 86 AEPRDSKS 93 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCCcccC
Confidence 99876543
No 17
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.3e-20 Score=138.94 Aligned_cols=86 Identities=34% Similarity=0.442 Sum_probs=80.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
....++|||+||++++++++|+++|++||.|.+|+++.++ +++++|||||+|.+.++|++|++.||+..|+|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4456799999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy15515 119 AIKKQGF 125 (242)
Q Consensus 119 a~~~~~~ 125 (242)
++.+...
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9887653
No 18
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=137.46 Aligned_cols=86 Identities=27% Similarity=0.455 Sum_probs=80.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEE-EEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQV-KIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v-~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
...++|||+|||.++++++|+++|++||.|.++ +|+.++ +|+++|||||+|.+.++|++|++.||+..|+|++|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356799999999999999999999999999999 999996 899999999999999999999999999999999999999
Q ss_pred cccCCCCC
Q psy15515 119 AIKKQGFT 126 (242)
Q Consensus 119 a~~~~~~~ 126 (242)
+.++....
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 99876543
No 19
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=3.8e-20 Score=137.76 Aligned_cols=86 Identities=21% Similarity=0.357 Sum_probs=80.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCC---eEEEEe
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKE---KRLNIA 117 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G---~~l~V~ 117 (242)
...++|||+||+.++++++|+++|++||.|.+++|..+++|+++|||||+|.+.++|++|++.||+..+.| +.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred ecccCCCCC
Q psy15515 118 PAIKKQGFT 126 (242)
Q Consensus 118 ~a~~~~~~~ 126 (242)
+++.+....
T Consensus 93 ~a~~~~~~~ 101 (105)
T 2dnh_A 93 FADTDKESG 101 (105)
T ss_dssp ESCSSCCCS
T ss_pred ECccCcccC
Confidence 999876543
No 20
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4e-20 Score=134.79 Aligned_cols=80 Identities=28% Similarity=0.435 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...++|||+|||.++++++|+++|++||.|.++++..++ +++++|||||+|.+.++|++|++.||+..|+|++|+|.+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 455799999999999999999999999999999999998 7999999999999999999999999999999999999998
Q ss_pred c
Q psy15515 120 I 120 (242)
Q Consensus 120 ~ 120 (242)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 21
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.7e-20 Score=137.80 Aligned_cols=84 Identities=17% Similarity=0.357 Sum_probs=79.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
..++|||+|||+++++++|+++|++||.|++++|+.++ +++++|||||+|.+.++|++|++.||+..|+|++|+|.+++
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 45699999999999999999999999999999999997 89999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy15515 121 KKQGF 125 (242)
Q Consensus 121 ~~~~~ 125 (242)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2cqb_A 91 PMRIK 95 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 22
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=138.38 Aligned_cols=86 Identities=21% Similarity=0.300 Sum_probs=80.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
....++|||+||++++++++|+++|++||.|.+++|+.++ +|+++|||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4456799999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy15515 119 AIKKQGF 125 (242)
Q Consensus 119 a~~~~~~ 125 (242)
++.+...
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9876543
No 23
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=141.03 Aligned_cols=85 Identities=29% Similarity=0.509 Sum_probs=80.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...++|||+||+.++++++|+++|++||.|++|+|..+++|+++|||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCC
Q psy15515 121 KKQGF 125 (242)
Q Consensus 121 ~~~~~ 125 (242)
++...
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 77543
No 24
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-19 Score=137.79 Aligned_cols=85 Identities=28% Similarity=0.546 Sum_probs=78.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
.+...++|||+||++++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++|++.+++ .|+|++|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 34566899999999999999999999999999999999998 899999999999999999999999998 8999999999
Q ss_pred ecccCCC
Q psy15515 118 PAIKKQG 124 (242)
Q Consensus 118 ~a~~~~~ 124 (242)
++..+..
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9986643
No 25
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=2.4e-20 Score=133.36 Aligned_cols=80 Identities=18% Similarity=0.409 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...++|||+|||.++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|++|++.||+..++|++|+|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356799999999999999999999999999999999986 8999999999999999999999999999999999999998
Q ss_pred c
Q psy15515 120 I 120 (242)
Q Consensus 120 ~ 120 (242)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 26
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.8e-20 Score=136.81 Aligned_cols=86 Identities=26% Similarity=0.467 Sum_probs=80.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
.+...++|||+||++++++++|+++|++||.|.++++..+ +|+++|||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456779999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy15515 119 AIKKQGF 125 (242)
Q Consensus 119 a~~~~~~ 125 (242)
++++...
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9987654
No 27
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=3.7e-20 Score=135.85 Aligned_cols=82 Identities=26% Similarity=0.420 Sum_probs=78.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
.++|||+||+.++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|++|++.|||..++|+.|+|.++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 4699999999999999999999999999999999998 899999999999999999999999999999999999999987
Q ss_pred CCC
Q psy15515 122 KQG 124 (242)
Q Consensus 122 ~~~ 124 (242)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 753
No 28
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.6e-20 Score=134.62 Aligned_cols=82 Identities=27% Similarity=0.462 Sum_probs=77.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
....++|||+|||.++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|++|++.||+..|+|++|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3445799999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred ccc
Q psy15515 119 AIK 121 (242)
Q Consensus 119 a~~ 121 (242)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 874
No 29
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.1e-20 Score=137.33 Aligned_cols=87 Identities=31% Similarity=0.521 Sum_probs=80.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-CCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCE-eCCeEEEEee
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQ-YGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIM-FKEKRLNIAP 118 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~-i~G~~l~V~~ 118 (242)
...++|||+||++++++++|+++|++ ||.|.+++|+.+++|+++|||||+|.+.++|++|++.||+.. |+|++|+|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45579999999999999999999999 999999999999999999999999999999999999999999 9999999999
Q ss_pred cccCCCCCC
Q psy15515 119 AIKKQGFTG 127 (242)
Q Consensus 119 a~~~~~~~~ 127 (242)
+.++.....
T Consensus 87 a~~~~~~~~ 95 (104)
T 2dhg_A 87 AIPKASRVK 95 (104)
T ss_dssp CCCCCSCCC
T ss_pred ccCCCcCCC
Confidence 987765433
No 30
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=4.8e-21 Score=139.19 Aligned_cols=81 Identities=23% Similarity=0.381 Sum_probs=71.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCC--CeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYG--IVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G--~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
.+|||+||++++++++|+++|++|| .|.+++++.++ +|+++|||||+|.+.++|++|++.|||.+|+|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999998 99999999999999999999999999999999999999998
Q ss_pred cCCC
Q psy15515 121 KKQG 124 (242)
Q Consensus 121 ~~~~ 124 (242)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7643
No 31
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=139.53 Aligned_cols=81 Identities=17% Similarity=0.344 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCC--eEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCC----EeCCeE
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGI--VKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNI----MFKEKR 113 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~--i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~----~i~G~~ 113 (242)
..-.+|||+||++++|+++|+++|++||. |.+|++++|+ +|++||||||+|.+.++|++|++.||+. .|+||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34459999999999999999999999995 6789999998 8999999999999999999999999987 599999
Q ss_pred EEEeeccc
Q psy15515 114 LNIAPAIK 121 (242)
Q Consensus 114 l~V~~a~~ 121 (242)
|+|.||+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
No 32
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-19 Score=133.81 Aligned_cols=85 Identities=26% Similarity=0.549 Sum_probs=78.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
+...++|||+|||+++++++|+++|++||.|.+|+|+.++.+ ++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 445679999999999999999999999999999999998754 8999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy15515 120 IKKQGF 125 (242)
Q Consensus 120 ~~~~~~ 125 (242)
+.+...
T Consensus 91 ~~~~~~ 96 (103)
T 2cq3_A 91 TARVMT 96 (103)
T ss_dssp CSSCCC
T ss_pred ccCCCC
Confidence 987654
No 33
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=2.4e-20 Score=144.87 Aligned_cols=86 Identities=28% Similarity=0.466 Sum_probs=80.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
.....++|||+||++++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|++||+.||+..|+|++|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456799999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecccCCC
Q psy15515 118 PAIKKQG 124 (242)
Q Consensus 118 ~a~~~~~ 124 (242)
+++++..
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9987753
No 34
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=137.32 Aligned_cols=85 Identities=29% Similarity=0.525 Sum_probs=80.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...++|||+|||+++++++|+++|++||.|.+++++.++ +++++|||||+|.+.++|++|++.||+..|+|++|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 355799999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy15515 120 IKKQGF 125 (242)
Q Consensus 120 ~~~~~~ 125 (242)
+++...
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 987654
No 35
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=8.5e-20 Score=137.04 Aligned_cols=86 Identities=23% Similarity=0.424 Sum_probs=80.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcC------CCEeCCe
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSD------NIMFKEK 112 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~------~~~i~G~ 112 (242)
....++|||+|||+++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|++|++.|| +..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3456799999999999999999999999999999999998 89999999999999999999999999 9999999
Q ss_pred EEEEeecccCCCC
Q psy15515 113 RLNIAPAIKKQGF 125 (242)
Q Consensus 113 ~l~V~~a~~~~~~ 125 (242)
.|+|.++.++...
T Consensus 92 ~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 92 QLKVDLAVTRDEA 104 (111)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCccC
Confidence 9999999987654
No 36
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=1e-19 Score=135.11 Aligned_cols=84 Identities=20% Similarity=0.415 Sum_probs=78.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
+...++|||+|||+++++++|+++|++|| |.+|+|+.++ +|+++|||||+|.+.++|++|+ .||+..|+|++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34567999999999999999999999997 9999999998 8999999999999999999999 8999999999999999
Q ss_pred cccCCCC
Q psy15515 119 AIKKQGF 125 (242)
Q Consensus 119 a~~~~~~ 125 (242)
++.+...
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9877643
No 37
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=134.16 Aligned_cols=86 Identities=21% Similarity=0.335 Sum_probs=78.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
+...++|||+|||+++++++|+++|++||.|++|+|+.++.+ ++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 445679999999999999999999999999999999998633 6899999999999999999999999999999999999
Q ss_pred ccCCCCC
Q psy15515 120 IKKQGFT 126 (242)
Q Consensus 120 ~~~~~~~ 126 (242)
+.+....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cqi_A 91 TTPSSQK 97 (103)
T ss_dssp CCTTCCC
T ss_pred CCCcccc
Confidence 9876543
No 38
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.6e-20 Score=136.76 Aligned_cols=86 Identities=23% Similarity=0.417 Sum_probs=80.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeC-C-CCCcccEEEEEEcCHHHHHHHHHHc-CCCEeCCeEEEE
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVD-R-AGISKGYGFITFDSEEEAKRLQKDS-DNIMFKEKRLNI 116 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~-~-~g~skg~gFV~F~s~e~A~~Al~~l-~~~~i~G~~l~V 116 (242)
+...++|||+|||+++++++|+++|++||.|.+|+|+.+ + +|+++|||||+|.+.++|++|++.| |+..|+|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 445679999999999999999999999999999999999 5 8999999999999999999999999 999999999999
Q ss_pred eecccCCCC
Q psy15515 117 APAIKKQGF 125 (242)
Q Consensus 117 ~~a~~~~~~ 125 (242)
.+++++...
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999987654
No 39
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.2e-20 Score=138.45 Aligned_cols=87 Identities=26% Similarity=0.440 Sum_probs=81.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeE--------EEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEe
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVK--------QVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMF 109 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i 109 (242)
.+...++|||+||++++++++|+++|++||.|. .|+|+.++ +|+++|||||+|.+.++|++|++.||+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999999 69999997 899999999999999999999999999999
Q ss_pred CCeEEEEeecccCCCC
Q psy15515 110 KEKRLNIAPAIKKQGF 125 (242)
Q Consensus 110 ~G~~l~V~~a~~~~~~ 125 (242)
+|++|+|.+++.+...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999987654
No 40
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=4e-20 Score=137.87 Aligned_cols=87 Identities=23% Similarity=0.413 Sum_probs=80.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEe---CCeEE
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMF---KEKRL 114 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i---~G~~l 114 (242)
.+...++|||+||+.++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|++|++.||+..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 34567899999999999999999999999999999999998 899999999999999999999999999998 89999
Q ss_pred EEeecccCCCC
Q psy15515 115 NIAPAIKKQGF 125 (242)
Q Consensus 115 ~V~~a~~~~~~ 125 (242)
+|.++..+...
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999987653
No 41
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=134.66 Aligned_cols=82 Identities=28% Similarity=0.447 Sum_probs=77.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
+...++|||+|||+++++++|+++|++||.|.+++|..+++|+++|||||+|.+.++|++|++.||+..|+|++|+|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cc
Q psy15515 120 IK 121 (242)
Q Consensus 120 ~~ 121 (242)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 42
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.5e-20 Score=137.59 Aligned_cols=84 Identities=21% Similarity=0.449 Sum_probs=79.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
....++|||+||+.++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3456799999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccCC
Q psy15515 119 AIKKQ 123 (242)
Q Consensus 119 a~~~~ 123 (242)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98764
No 43
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9.4e-20 Score=133.94 Aligned_cols=85 Identities=22% Similarity=0.413 Sum_probs=78.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCC--C--CcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEE
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRA--G--ISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNI 116 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--g--~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V 116 (242)
...++|||+|||+++++++|+++|++||.|.++++..++. | +++|||||+|.+.++|++|++.||+..|+|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4567999999999999999999999999999999998763 4 88999999999999999999999999999999999
Q ss_pred eecccCCCC
Q psy15515 117 APAIKKQGF 125 (242)
Q Consensus 117 ~~a~~~~~~ 125 (242)
.+++.+...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999877543
No 44
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=6.2e-20 Score=137.82 Aligned_cols=85 Identities=25% Similarity=0.448 Sum_probs=80.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
....++|||+|||.++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|++|++.|||..|+|++|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4456799999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccCCC
Q psy15515 119 AIKKQG 124 (242)
Q Consensus 119 a~~~~~ 124 (242)
++.+..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987754
No 45
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=135.08 Aligned_cols=84 Identities=19% Similarity=0.337 Sum_probs=78.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-C-CCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-A-GISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~-g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
...++|||+||++++++++|+++|++|| |.+|+|+.++ + |+++|||||+|.+.++|++|| .||+..|+|++|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4557999999999999999999999999 9999999998 5 999999999999999999999 9999999999999999
Q ss_pred cccCCCCC
Q psy15515 119 AIKKQGFT 126 (242)
Q Consensus 119 a~~~~~~~ 126 (242)
++.+....
T Consensus 91 a~~~~~~~ 98 (104)
T 1wi8_A 91 ADQAQDKD 98 (104)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 99876543
No 46
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.82 E-value=4.7e-20 Score=147.81 Aligned_cols=81 Identities=25% Similarity=0.420 Sum_probs=76.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC--CeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYG--IVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
..++|||+||++++++++|+++|++|| .|.+|+|+.|+ +|+++|||||+|.+.++|++||+.|||..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999999998 999999999999999999999999999999999999999
Q ss_pred cccC
Q psy15515 119 AIKK 122 (242)
Q Consensus 119 a~~~ 122 (242)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9754
No 47
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=6.8e-20 Score=135.16 Aligned_cols=81 Identities=26% Similarity=0.402 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEE--------EEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeC
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQ--------VKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFK 110 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~ 110 (242)
....++|||+||+.++++++|+++|++||.|.+ ++++.++ +|+++|||||+|.+.++|++|++.|||..++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345679999999999999999999999999999 9999997 8999999999999999999999999999999
Q ss_pred CeEEEEeecc
Q psy15515 111 EKRLNIAPAI 120 (242)
Q Consensus 111 G~~l~V~~a~ 120 (242)
|++|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 48
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.7e-20 Score=136.19 Aligned_cols=85 Identities=25% Similarity=0.434 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
+...++|||+|||+++++++|+++|++||.|.+|+|+.++ +|+++|||||+|++.++|++||+. ++..|+|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 4566799999999999999999999999999999999997 899999999999999999999998 99999999999999
Q ss_pred cccCCCC
Q psy15515 119 AIKKQGF 125 (242)
Q Consensus 119 a~~~~~~ 125 (242)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9977653
No 49
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.5e-20 Score=140.59 Aligned_cols=85 Identities=22% Similarity=0.413 Sum_probs=79.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...++|||+||++++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|++||+. ++..|+|++|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 345799999999999999999999999999999999998 899999999999999999999987 999999999999999
Q ss_pred ccCCCCC
Q psy15515 120 IKKQGFT 126 (242)
Q Consensus 120 ~~~~~~~ 126 (242)
.++....
T Consensus 104 ~~~~~~~ 110 (116)
T 1x4b_A 104 VAREESG 110 (116)
T ss_dssp SSCCCCC
T ss_pred CCCccCC
Confidence 9886543
No 50
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.82 E-value=6.4e-20 Score=138.03 Aligned_cols=85 Identities=29% Similarity=0.604 Sum_probs=80.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
++...++|||+||+.++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|++|++.|||..|+|++|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred ecccCC
Q psy15515 118 PAIKKQ 123 (242)
Q Consensus 118 ~a~~~~ 123 (242)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998764
No 51
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=7e-20 Score=131.65 Aligned_cols=82 Identities=28% Similarity=0.553 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCC-cccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGI-SKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~-skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
..++|||+|||.++++++|+++|++||.|.++++..++ ++. ++|||||+|.+.++|++|++.|||..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 45799999999999999999999999999999999887 444 8999999999999999999999999999999999999
Q ss_pred ccCC
Q psy15515 120 IKKQ 123 (242)
Q Consensus 120 ~~~~ 123 (242)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 52
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.2e-19 Score=132.64 Aligned_cols=84 Identities=15% Similarity=0.349 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
+...++|||+||+.++++++|+++|++||.|++|+|.. +++++|||||+|++.++|++|++.||+..|+|++|+|.++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 44567999999999999999999999999999999965 4568999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy15515 120 IKKQGF 125 (242)
Q Consensus 120 ~~~~~~ 125 (242)
+.+...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 877543
No 53
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=7.5e-20 Score=134.71 Aligned_cols=82 Identities=20% Similarity=0.359 Sum_probs=78.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeE-EEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeE----EE
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVK-QVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKR----LN 115 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~----l~ 115 (242)
..++|||+|||+++++++|+++|++||.|. +++++.++ +|+++|||||+|.+.++|++|++.||+..++|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 457999999999999999999999999999 99999998 8999999999999999999999999999999999 99
Q ss_pred EeecccCC
Q psy15515 116 IAPAIKKQ 123 (242)
Q Consensus 116 V~~a~~~~ 123 (242)
|.|++...
T Consensus 88 v~~a~~~~ 95 (99)
T 2div_A 88 LNYATYSG 95 (99)
T ss_dssp EEETTCCS
T ss_pred EeecCCCC
Confidence 99998664
No 54
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.81 E-value=2e-19 Score=129.39 Aligned_cols=80 Identities=24% Similarity=0.500 Sum_probs=74.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
.+...++|||+|||+++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|++|++ +++..|+|++|+|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34567799999999999999999999999999999999998 89999999999999999999995 58889999999999
Q ss_pred ec
Q psy15515 118 PA 119 (242)
Q Consensus 118 ~a 119 (242)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 55
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.9e-20 Score=139.36 Aligned_cols=82 Identities=18% Similarity=0.274 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...++|||+||++++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|++|+ .||+..|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 345799999999999999999999999999999999998 7999999999999999999999 99999999999999999
Q ss_pred ccCC
Q psy15515 120 IKKQ 123 (242)
Q Consensus 120 ~~~~ 123 (242)
+.+.
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 8764
No 56
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=1.4e-19 Score=131.41 Aligned_cols=83 Identities=23% Similarity=0.337 Sum_probs=77.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...++|||+|||.++++++|+++|++||.|.++++..+ +|+++|||||+|.+.++|++|++.||+..|+|++|+|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 35679999999999999999999999999999999985 78899999999999999999999999999999999999998
Q ss_pred cCCC
Q psy15515 121 KKQG 124 (242)
Q Consensus 121 ~~~~ 124 (242)
++..
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7754
No 57
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=1.4e-20 Score=139.65 Aligned_cols=82 Identities=23% Similarity=0.348 Sum_probs=77.8
Q ss_pred CCcEEEEcCCCC------CCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCC-eE
Q psy15515 42 VPKRVFVGGITS------TTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKE-KR 113 (242)
Q Consensus 42 ~~~~lfVgnLp~------~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G-~~ 113 (242)
..++|||+|||. ++++++|+++|++||.|.+++|+.++ +|+++|||||+|.+.++|++|++.|||..|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 457999999999 99999999999999999999999999 79999999999999999999999999999999 99
Q ss_pred EEEeecccCC
Q psy15515 114 LNIAPAIKKQ 123 (242)
Q Consensus 114 l~V~~a~~~~ 123 (242)
|+|.++.++.
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999998653
No 58
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=1.5e-19 Score=130.26 Aligned_cols=81 Identities=25% Similarity=0.545 Sum_probs=76.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
+.++|||+|||.++++++|+++|++||.|.++++..++ +|+++|||||+|.+.++|++|+ .||+..++|++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 35699999999999999999999999999999999998 8999999999999999999999 999999999999999998
Q ss_pred cCC
Q psy15515 121 KKQ 123 (242)
Q Consensus 121 ~~~ 123 (242)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 653
No 59
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.2e-19 Score=129.41 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...++|||+|||+++++++|+++|+.| .|.+++|+.+.+|+++|||||+|.+.++|++|++ ||+..|+|+.|+|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 456799999999999999999999999 9999999999899999999999999999999999 99999999999999998
Q ss_pred cCCC
Q psy15515 121 KKQG 124 (242)
Q Consensus 121 ~~~~ 124 (242)
.+..
T Consensus 86 ~~~~ 89 (91)
T 2dgw_A 86 SGPS 89 (91)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7743
No 60
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=2.2e-19 Score=134.07 Aligned_cols=81 Identities=20% Similarity=0.395 Sum_probs=77.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
....++|||+||++++++++|+++|++||.|++++|+.+++|+++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c
Q psy15515 120 I 120 (242)
Q Consensus 120 ~ 120 (242)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 61
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=7.9e-20 Score=134.35 Aligned_cols=83 Identities=17% Similarity=0.283 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...++|||+|||+++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|++|++.||+..|+|++|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 345799999999999999999999999999988888877 8999999999999999999999999999999999999998
Q ss_pred ccCC
Q psy15515 120 IKKQ 123 (242)
Q Consensus 120 ~~~~ 123 (242)
..+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7653
No 62
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=132.33 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=75.3
Q ss_pred CCcEEEEcCCCCCCCHHHHH----HHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 42 VPKRVFVGGITSTTTEDELC----ELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
..++|||+||++++++++|+ ++|++||.|.+|+|+.++.+ +|||||+|.+.++|++|++.||+..|+|++|+|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45699999999999999999 99999999999999998844 8999999999999999999999999999999999
Q ss_pred ecccCCC
Q psy15515 118 PAIKKQG 124 (242)
Q Consensus 118 ~a~~~~~ 124 (242)
+++++..
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9987643
No 63
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6e-19 Score=130.88 Aligned_cols=85 Identities=28% Similarity=0.391 Sum_probs=78.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
.+...++|||+||++++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|++|++ +++.|+|++|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34456799999999999999999999999999999999998 89999999999999999999998 4789999999999
Q ss_pred ecccCCCC
Q psy15515 118 PAIKKQGF 125 (242)
Q Consensus 118 ~a~~~~~~ 125 (242)
++..+...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99987653
No 64
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=2e-19 Score=135.39 Aligned_cols=85 Identities=26% Similarity=0.461 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
.+...++|||+||++++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|++|++.+ +..|+|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 34556799999999999999999999999999999999998 8999999999999999999999886 499999999999
Q ss_pred ecccCCC
Q psy15515 118 PAIKKQG 124 (242)
Q Consensus 118 ~a~~~~~ 124 (242)
++..+..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987754
No 65
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=6.3e-20 Score=142.46 Aligned_cols=84 Identities=17% Similarity=0.375 Sum_probs=78.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEE--EEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCC----EeCCe
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQ--VKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNI----MFKEK 112 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~----~i~G~ 112 (242)
+...++|||+||++++++++|+++|++||.|.. |+|++|+ +|++||||||+|.+. +|++|++.||+. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345679999999999999999999999999976 9999999 999999999999999 999999999999 99999
Q ss_pred EEEEeecccCCC
Q psy15515 113 RLNIAPAIKKQG 124 (242)
Q Consensus 113 ~l~V~~a~~~~~ 124 (242)
+|+|.+++.+..
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987654
No 66
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=136.16 Aligned_cols=84 Identities=25% Similarity=0.525 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 38 YGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 38 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
..+...++|||+||+.++++++|+++|++||.|.++++..++. .++|||||+|.+.++|++|++.||+..|+|++|+|.
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3455678999999999999999999999999999999998864 489999999999999999999999999999999999
Q ss_pred ecccC
Q psy15515 118 PAIKK 122 (242)
Q Consensus 118 ~a~~~ 122 (242)
+++++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99876
No 67
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=4.6e-19 Score=141.25 Aligned_cols=85 Identities=19% Similarity=0.326 Sum_probs=80.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
....++|||+||++++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.||+..|+|++|+|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccCCC
Q psy15515 119 AIKKQG 124 (242)
Q Consensus 119 a~~~~~ 124 (242)
++....
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987654
No 68
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=1.9e-19 Score=138.35 Aligned_cols=86 Identities=21% Similarity=0.418 Sum_probs=80.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
....++|||+||++++++++|+++|++||.|.+|+|+.++ +|+++|||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4456799999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy15515 119 AIKKQGF 125 (242)
Q Consensus 119 a~~~~~~ 125 (242)
+..+...
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9877654
No 69
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.9e-20 Score=136.09 Aligned_cols=81 Identities=26% Similarity=0.335 Sum_probs=76.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
+...++|||+|||+++++++|+++|++||.|.+|+|+.++.|+++|||||+|.+.++|++|++ +++..|+|+.|+|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 456689999999999999999999999999999999999889999999999999999999998 8999999999999987
Q ss_pred cc
Q psy15515 120 IK 121 (242)
Q Consensus 120 ~~ 121 (242)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 64
No 70
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=6.1e-19 Score=135.31 Aligned_cols=86 Identities=19% Similarity=0.380 Sum_probs=80.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
.....++|||+||+.++++++|+++|++||.|.+++|..+++|+++|||||+|.+.++|++|++.||+..|+|++|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34566899999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccCCC
Q psy15515 119 AIKKQG 124 (242)
Q Consensus 119 a~~~~~ 124 (242)
+.....
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 987643
No 71
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=1.1e-19 Score=132.78 Aligned_cols=80 Identities=18% Similarity=0.316 Sum_probs=74.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
..++|||+|||+++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|++|++.||+..|+|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 34699999999999999999999999999988888877 89999999999999999999999999999999999999876
Q ss_pred c
Q psy15515 121 K 121 (242)
Q Consensus 121 ~ 121 (242)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 72
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.9e-19 Score=134.12 Aligned_cols=84 Identities=21% Similarity=0.333 Sum_probs=77.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH---HHhhcCCCeEEEEEeeCC-CC---CcccEEEEEEcCHHHHHHHHHHcCCCEeCCe
Q psy15515 40 TVVPKRVFVGGITSTTTEDELC---ELFSQYGIVKQVKIVVDR-AG---ISKGYGFITFDSEEEAKRLQKDSDNIMFKEK 112 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~---~~F~~~G~i~~v~i~~~~-~g---~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~ 112 (242)
....++|||+|||+++++++|+ ++|++||.|.+++|+.++ ++ +++|||||+|++.++|++|++.||+..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456799999999999999999 999999999999999887 43 5669999999999999999999999999999
Q ss_pred EEEEeecccCC
Q psy15515 113 RLNIAPAIKKQ 123 (242)
Q Consensus 113 ~l~V~~a~~~~ 123 (242)
+|+|.++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999999875
No 73
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8e-19 Score=129.73 Aligned_cols=82 Identities=23% Similarity=0.385 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
+...++|||+|||+++++++|+++|++||.| +++.+.+|+++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3456799999999999999999999999976 5666678999999999999999999999999999999999999999
Q ss_pred ccCCC
Q psy15515 120 IKKQG 124 (242)
Q Consensus 120 ~~~~~ 124 (242)
+++..
T Consensus 89 ~~~~~ 93 (101)
T 2fc9_A 89 GPRGS 93 (101)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 88754
No 74
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-19 Score=134.61 Aligned_cols=83 Identities=31% Similarity=0.556 Sum_probs=78.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
..++|||+||+.++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|++|++.||+..++|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45799999999999999999999999999999999998 89999999999999999999999999999999999999998
Q ss_pred cCCC
Q psy15515 121 KKQG 124 (242)
Q Consensus 121 ~~~~ 124 (242)
++..
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 7754
No 75
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.2e-19 Score=133.55 Aligned_cols=84 Identities=19% Similarity=0.340 Sum_probs=78.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEe--------C
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMF--------K 110 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i--------~ 110 (242)
.+...++|||+|||.++++++|+++|++||.|.+++|+.+++|+++|||||+|.+.++|++|++.||+..| .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred CeEEEEeecccC
Q psy15515 111 EKRLNIAPAIKK 122 (242)
Q Consensus 111 G~~l~V~~a~~~ 122 (242)
++.|+|.|+.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999865
No 76
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=4.9e-19 Score=135.62 Aligned_cols=81 Identities=23% Similarity=0.522 Sum_probs=76.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
.++|||+||++++++++|+++|++||.|.+|+++.++ +|+++|||||+|.+.++|++|+ .||+..|+|+.|+|.+++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 4699999999999999999999999999999999997 8999999999999999999999 8999999999999999986
Q ss_pred CCC
Q psy15515 122 KQG 124 (242)
Q Consensus 122 ~~~ 124 (242)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 77
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=5e-19 Score=140.98 Aligned_cols=85 Identities=25% Similarity=0.366 Sum_probs=80.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
....++|||+||++++++++|+++|++||.|.+++|+.|+ +|+++|||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456799999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccCCC
Q psy15515 119 AIKKQG 124 (242)
Q Consensus 119 a~~~~~ 124 (242)
++.+..
T Consensus 147 a~~~~~ 152 (158)
T 2kn4_A 147 ARYGRP 152 (158)
T ss_dssp ECCSSC
T ss_pred CCCCCC
Confidence 987654
No 78
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.3e-20 Score=131.83 Aligned_cols=80 Identities=23% Similarity=0.425 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...++|||+|||+++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 356799999999999999999999999999999999998 8999999999999999999999999999999999988875
Q ss_pred c
Q psy15515 120 I 120 (242)
Q Consensus 120 ~ 120 (242)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 79
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=9.3e-20 Score=134.96 Aligned_cols=82 Identities=18% Similarity=0.359 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC--CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR--AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
....++|||+||++++++++|+++|++|| |.+++|+.++ +|+++|||||+|.+.++|++|+ .||+..|+|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45568999999999999999999999999 9999999987 7999999999999999999999 899999999999999
Q ss_pred ecccCC
Q psy15515 118 PAIKKQ 123 (242)
Q Consensus 118 ~a~~~~ 123 (242)
+++.+.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998764
No 80
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.3e-19 Score=133.11 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcC--CCEeCCeEEEEe
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD--NIMFKEKRLNIA 117 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~--~~~i~G~~l~V~ 117 (242)
+...++|||+|||++++|++|+++|++||.|++|+|+++ ||||||+|++.++|++|++.|+ +.+|+|++|+|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 345679999999999999999999999999999999975 6999999999999999999886 479999999999
Q ss_pred ecccCCCC
Q psy15515 118 PAIKKQGF 125 (242)
Q Consensus 118 ~a~~~~~~ 125 (242)
+++.+...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99877543
No 81
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.8e-19 Score=132.59 Aligned_cols=85 Identities=18% Similarity=0.268 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCC-eEEEEEe-eCC-CCCcccEEEEEEcCHHHHHHHHHHcC--CCEeCCeEEE
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGI-VKQVKIV-VDR-AGISKGYGFITFDSEEEAKRLQKDSD--NIMFKEKRLN 115 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~-i~~v~i~-~~~-~g~skg~gFV~F~s~e~A~~Al~~l~--~~~i~G~~l~ 115 (242)
...++|||+|||+++++++|+++|++||. |.++.++ .++ +|+++|||||+|.+.++|++|++.|| +..++|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35679999999999999999999999998 9999998 677 78999999999999999999999996 5899999999
Q ss_pred EeecccCCCC
Q psy15515 116 IAPAIKKQGF 125 (242)
Q Consensus 116 V~~a~~~~~~ 125 (242)
|.+++++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999977643
No 82
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=9.1e-20 Score=127.55 Aligned_cols=74 Identities=27% Similarity=0.571 Sum_probs=71.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 45 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
+|||+|||+++++++|+++|++||.|.++++..++ +|+++|||||+|.+.++|++|++ ||+..++|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998 89999999999999999999997 9999999999999986
No 83
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.79 E-value=4.5e-19 Score=132.48 Aligned_cols=88 Identities=16% Similarity=0.313 Sum_probs=78.6
Q ss_pred CCCCCCCCcEEEEcCCCCCC------CHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEe
Q psy15515 36 PKYGTVVPKRVFVGGITSTT------TEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMF 109 (242)
Q Consensus 36 ~~~~~~~~~~lfVgnLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i 109 (242)
+...+...++|||+|||+.+ ++++|+++|++||.|.+++|. ..+|+++|||||+|.+.++|++|++.|||..|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 8 PQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp CCSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 33345557899999999999 789999999999999999988 34899999999999999999999999999999
Q ss_pred CCe-EEEEeecccCCC
Q psy15515 110 KEK-RLNIAPAIKKQG 124 (242)
Q Consensus 110 ~G~-~l~V~~a~~~~~ 124 (242)
+|+ +|+|.++.....
T Consensus 87 ~g~~~l~V~~a~~~~k 102 (105)
T 2nlw_A 87 DKQHTFRVNLFTDFDK 102 (105)
T ss_dssp STTCEEEEECSCCCCC
T ss_pred CCCceEEEEEcchHhh
Confidence 998 999999986654
No 84
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2e-19 Score=136.33 Aligned_cols=83 Identities=12% Similarity=0.238 Sum_probs=77.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCe-EEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIV-KQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
+...++|||+|||+++++++|+++|+.||.| .+|+|+.|++|+++|||||+|.+.++|++||+. |+..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3456799999999999999999999999999 889999999999999999999999999999977 99999999999999
Q ss_pred cccCC
Q psy15515 119 AIKKQ 123 (242)
Q Consensus 119 a~~~~ 123 (242)
+..+.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98764
No 85
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=7.4e-19 Score=136.90 Aligned_cols=80 Identities=18% Similarity=0.420 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
+...++|||+|||.++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|++|++.||+..|+|++|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999999997 899999999999999999999999999999999999998
Q ss_pred c
Q psy15515 119 A 119 (242)
Q Consensus 119 a 119 (242)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 86
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.79 E-value=1.5e-19 Score=153.43 Aligned_cols=81 Identities=23% Similarity=0.379 Sum_probs=76.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC--CeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYG--IVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
..++|||+||++++++++|+++|++|| .|++|+|++|+ +|++||||||+|.+.++|++||+.||+++|+|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 99999999998 999999999999999999999999999999999999999
Q ss_pred cccC
Q psy15515 119 AIKK 122 (242)
Q Consensus 119 a~~~ 122 (242)
+++.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8643
No 87
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.2e-19 Score=132.31 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...++|||+|||+++++++|+++|+.||. ++|+|+.+++|+++|||||+|++.++|++|| .+|+..|+|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECC
Confidence 45579999999999999999999999995 5999999999999999999999999999999 579999999999999988
Q ss_pred cCCC
Q psy15515 121 KKQG 124 (242)
Q Consensus 121 ~~~~ 124 (242)
....
T Consensus 91 ~~~~ 94 (102)
T 1wez_A 91 TAGT 94 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 88
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.8e-19 Score=130.39 Aligned_cols=82 Identities=23% Similarity=0.337 Sum_probs=76.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEE-EEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQ-VKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...++|||+|||+++++++|+++|++||.|.+ ++|+.+.+|+++|||||+|.+.++|++||+. |+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 34579999999999999999999999999987 8888888999999999999999999999987 999999999999998
Q ss_pred ccCC
Q psy15515 120 IKKQ 123 (242)
Q Consensus 120 ~~~~ 123 (242)
.++.
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7654
No 89
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=128.81 Aligned_cols=83 Identities=34% Similarity=0.498 Sum_probs=75.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
....++|||+||++++++++|+++|+.|+ .++++.++ +++++|||||+|.+.++|++|++.||+..|+|++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44567999999999999999999999874 67888887 899999999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy15515 119 AIKKQGF 125 (242)
Q Consensus 119 a~~~~~~ 125 (242)
++++...
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9987654
No 90
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.6e-19 Score=133.40 Aligned_cols=79 Identities=19% Similarity=0.391 Sum_probs=74.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
+..+|||+|||++++++||+++|+.| .|.+|+|+.|++|+++|||||+|.+.++|++|| .+|+..|+||.|+|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 34699999999999999999999999 899999999999999999999999999999999 7999999999999998875
Q ss_pred C
Q psy15515 122 K 122 (242)
Q Consensus 122 ~ 122 (242)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 5
No 91
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=2.2e-19 Score=140.43 Aligned_cols=88 Identities=24% Similarity=0.328 Sum_probs=81.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEE
Q psy15515 38 YGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNI 116 (242)
Q Consensus 38 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V 116 (242)
..+...++|||+|||+++++++|+++|++||.|++|+|+.++ +|+++|||||+|.+.++|++|++.||+..|+|++|+|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344566799999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred eecccCCCC
Q psy15515 117 APAIKKQGF 125 (242)
Q Consensus 117 ~~a~~~~~~ 125 (242)
.+++.+...
T Consensus 122 ~~a~~~~~~ 130 (135)
T 2lea_A 122 QMARYGRPP 130 (135)
T ss_dssp EECCCCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 92
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=3.6e-19 Score=135.94 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=76.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCC---eEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGI---VKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
...++|||+|||+++++++|+++|+.||. |.+|+|+.+++|+++|||||+|.+.++|++||+ +|+..|+|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 34579999999999999999999999999 899999999899999999999999999999998 99999999999999
Q ss_pred ecccCC
Q psy15515 118 PAIKKQ 123 (242)
Q Consensus 118 ~a~~~~ 123 (242)
++..+.
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987653
No 93
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=6.5e-20 Score=132.76 Aligned_cols=80 Identities=30% Similarity=0.564 Sum_probs=73.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccC
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKK 122 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~ 122 (242)
++|||+||+.++++++|+++|++||.|.++++..++ +|+++|||||+|.+.+ |++|++.||+..++|++|+|++|..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999999999998 7999999999999999 99999999999999999999999876
Q ss_pred CC
Q psy15515 123 QG 124 (242)
Q Consensus 123 ~~ 124 (242)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 94
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-19 Score=126.63 Aligned_cols=75 Identities=29% Similarity=0.534 Sum_probs=72.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
++|||+|||.++++++|+++|++||.|.++++..++ +|+++|||||+|.+.++|++|++.++ ..++|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998 89999999999999999999999999 9999999999987
No 95
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=124.88 Aligned_cols=78 Identities=24% Similarity=0.473 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...++|||+||+.++++++|+++|++||.|.++++. +|||||+|.+.++|++|++.||+..|+|++|+|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 456799999999999999999999999999999997 5899999999999999999999999999999999999
Q ss_pred cCCCC
Q psy15515 121 KKQGF 125 (242)
Q Consensus 121 ~~~~~ 125 (242)
++...
T Consensus 79 ~~~~~ 83 (90)
T 2dnq_A 79 NKSKA 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 96
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.2e-18 Score=127.70 Aligned_cols=79 Identities=19% Similarity=0.269 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCC-----eEEE
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKE-----KRLN 115 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G-----~~l~ 115 (242)
...++|||+|||+++++++|+++|++||.|++|+|+.+ |||||+|++.++|++||+.||+.+|+| +.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 34579999999999999999999999999999999876 899999999999999999999999999 9999
Q ss_pred EeecccCCCC
Q psy15515 116 IAPAIKKQGF 125 (242)
Q Consensus 116 V~~a~~~~~~ 125 (242)
|.+++++...
T Consensus 87 V~~a~~~~~~ 96 (108)
T 1x4c_A 87 VKVDGPRSPS 96 (108)
T ss_dssp EEESSCCSCC
T ss_pred EEeCCCCCCC
Confidence 9999987543
No 97
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=9.9e-19 Score=130.55 Aligned_cols=79 Identities=14% Similarity=0.197 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCC--CEeCCeEEEEee
Q psy15515 42 VPKRVFVGGITS-TTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDN--IMFKEKRLNIAP 118 (242)
Q Consensus 42 ~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~--~~i~G~~l~V~~ 118 (242)
..++|||+|||+ ++++++|+++|++||.|.+++|+++ +|||||+|++.++|++|++.||+ .+|+|++|+|.+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 467999999999 9999999999999999999999876 58999999999999999999885 469999999999
Q ss_pred cccCCCC
Q psy15515 119 AIKKQGF 125 (242)
Q Consensus 119 a~~~~~~ 125 (242)
++.+...
T Consensus 89 a~~~~~~ 95 (102)
T 1x4d_A 89 SQKYKRI 95 (102)
T ss_dssp ECCCTTS
T ss_pred CCCCCCC
Confidence 9976543
No 98
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.2e-19 Score=137.10 Aligned_cols=82 Identities=18% Similarity=0.327 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...++|||+|||+++++++|+++|+.||.|.++.++.+. +|+++|||||+|.+.++|++||+ ||+..|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 355799999999999999999999999999885555544 99999999999999999999998 9999999999999998
Q ss_pred ccCC
Q psy15515 120 IKKQ 123 (242)
Q Consensus 120 ~~~~ 123 (242)
..+.
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7653
No 99
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.2e-18 Score=126.36 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHc--CCCEeCCeEEEEee
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDS--DNIMFKEKRLNIAP 118 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l--~~~~i~G~~l~V~~ 118 (242)
...++|||+|||+++++++|+++|++||.|.++.++.+ ||||||+|++.++|++|++.| ++.+|+|++|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 34579999999999999999999999999999999875 699999999999999999976 57789999999999
Q ss_pred cccCCCC
Q psy15515 119 AIKKQGF 125 (242)
Q Consensus 119 a~~~~~~ 125 (242)
++.+...
T Consensus 88 a~~~~~~ 94 (101)
T 2cq1_A 88 SNHKELK 94 (101)
T ss_dssp CSCSSCC
T ss_pred cCcccCc
Confidence 9977544
No 100
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=4.1e-19 Score=139.27 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=76.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCC---eEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEE
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGI---VKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNI 116 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V 116 (242)
....++|||+|||+++++++|+++|++||. |.+|+|++|+.|+++|||||+|.+.++|++||+ ||+.+|+|+.|+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 345679999999999999999999999999 899999999899999999999999999999998 9999999999999
Q ss_pred eecccC
Q psy15515 117 APAIKK 122 (242)
Q Consensus 117 ~~a~~~ 122 (242)
.++..+
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 998755
No 101
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.2e-18 Score=128.40 Aligned_cols=80 Identities=20% Similarity=0.378 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...++|||+||+.++++++|+++|++||.|.+|+++.+ +|||||+|.+.++|++|++.||+..|+|++|+|.|++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 34679999999999999999999999999999999886 6999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy15515 121 KKQGF 125 (242)
Q Consensus 121 ~~~~~ 125 (242)
.+...
T Consensus 98 ~~~~~ 102 (109)
T 1x4g_A 98 ESPDM 102 (109)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87653
No 102
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=5.9e-18 Score=123.04 Aligned_cols=79 Identities=28% Similarity=0.465 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
....++|||+||++++++++|+++|++||.|.++++.+ +||||+|.+.++|++|++.||+..|+|++|+|.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 44567999999999999999999999999999999974 69999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy15515 120 IKKQGF 125 (242)
Q Consensus 120 ~~~~~~ 125 (242)
+.+...
T Consensus 80 ~~~~~~ 85 (92)
T 2dgt_A 80 TSRLRT 85 (92)
T ss_dssp SCCCSC
T ss_pred cCCCCC
Confidence 877543
No 103
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.3e-18 Score=125.94 Aligned_cols=73 Identities=15% Similarity=0.227 Sum_probs=69.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
..-|||+||++.+||++|+++|.+||.|.++++.. +||||||+|.+.++|++|++.||+..++|+.|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 45899999999999999999999999999999976 57999999999999999999999999999999999984
No 104
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=2.8e-18 Score=138.13 Aligned_cols=86 Identities=24% Similarity=0.430 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
....++|||+||++++++++|+++|++||.|..|.|+.++ +|+++|||||+|.+.++|++||+.||+..|+|+.|+|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q psy15515 119 AIKKQGF 125 (242)
Q Consensus 119 a~~~~~~ 125 (242)
+..+...
T Consensus 149 a~~~~~~ 155 (165)
T 1rk8_A 149 CFVKGPK 155 (165)
T ss_dssp SEECC--
T ss_pred ecCCCCC
Confidence 9877543
No 105
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.5e-18 Score=128.18 Aligned_cols=77 Identities=25% Similarity=0.390 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...++|||+||+.++++++|+++|++||.|.++++.. ++|||||+|.+.++|++|++.||+..++|++|+|.|++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 3457999999999999999999999999999999984 57999999999999999999999999999999999998
Q ss_pred cC
Q psy15515 121 KK 122 (242)
Q Consensus 121 ~~ 122 (242)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 106
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.76 E-value=9.4e-18 Score=124.54 Aligned_cols=78 Identities=28% Similarity=0.414 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
..++|||+||++++++++|+++|++||.|.+++++ ++||||+|.+.++|++|++.||+..|+|+.|+|.++++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 34689999999999999999999999999999986 47999999999999999999999999999999999988
Q ss_pred CCCCC
Q psy15515 122 KQGFT 126 (242)
Q Consensus 122 ~~~~~ 126 (242)
+....
T Consensus 83 ~~~~~ 87 (103)
T 2dgu_A 83 PDQKR 87 (103)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 76544
No 107
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=121.96 Aligned_cols=76 Identities=25% Similarity=0.477 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHc-CCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDS-DNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l-~~~~i~G~~l~V~~ 118 (242)
+...++|||+|||.++++++|+++|++||.|.++++..+ +|||||+|.+.++|++|++.| ++..++|++|+|.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 445679999999999999999999999999999999874 799999999999999999999 99999999999999
Q ss_pred cc
Q psy15515 119 AI 120 (242)
Q Consensus 119 a~ 120 (242)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 108
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.76 E-value=1.3e-18 Score=131.76 Aligned_cols=79 Identities=15% Similarity=0.142 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYG-IVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...+|||+|||+++++++|+++|++|| .|..+++..+ +++|||||+|.+.++|++||+.|||.+|+|+.|+|.++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 356999999999999999999999999 8999988643 478999999999999999999999999999999999987
Q ss_pred cCC
Q psy15515 121 KKQ 123 (242)
Q Consensus 121 ~~~ 123 (242)
.+.
T Consensus 104 ~~p 106 (111)
T 2jvr_A 104 NPP 106 (111)
T ss_dssp C--
T ss_pred CCC
Confidence 553
No 109
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.5e-18 Score=122.72 Aligned_cols=78 Identities=28% Similarity=0.445 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
+...++|||+|||+++++++|+++|++||.|.++++.+ +||||+|.+.++|++|++.||+..++|++|+|.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 44567999999999999999999999999999999974 69999999999999999999999999999999999
Q ss_pred ccCCC
Q psy15515 120 IKKQG 124 (242)
Q Consensus 120 ~~~~~ 124 (242)
+++..
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87754
No 110
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.76 E-value=8e-19 Score=129.95 Aligned_cols=84 Identities=43% Similarity=0.866 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
+...++|||+||++++++++|+++|++||.|.+++++.+++|+++|||||+|++.++|++|++ ++..++|++|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345679999999999999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred ccCCCC
Q psy15515 120 IKKQGF 125 (242)
Q Consensus 120 ~~~~~~ 125 (242)
.++...
T Consensus 84 ~~~~~~ 89 (102)
T 2xs2_A 84 IRKQNL 89 (102)
T ss_dssp EECC--
T ss_pred CcCcch
Confidence 877543
No 111
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.8e-18 Score=130.80 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcC--CCEeCCeEEEEee
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD--NIMFKEKRLNIAP 118 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~--~~~i~G~~l~V~~ 118 (242)
...++|||+|||++++|++|+++|++||.|++|+|+.+ ||||||+|++.++|++|++.|+ +.+|+|++|+|.+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 34679999999999999999999999999999999975 6999999999999999999887 4689999999999
Q ss_pred cccCCCCC
Q psy15515 119 AIKKQGFT 126 (242)
Q Consensus 119 a~~~~~~~ 126 (242)
++.+....
T Consensus 104 a~~k~~~~ 111 (119)
T 2ad9_A 104 SNHKELKT 111 (119)
T ss_dssp CSSSSCCC
T ss_pred ccCCCCCc
Confidence 98776543
No 112
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.7e-18 Score=125.34 Aligned_cols=78 Identities=19% Similarity=0.407 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeC--CeEEEEeec
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFK--EKRLNIAPA 119 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~--G~~l~V~~a 119 (242)
..++|||+||+.++++++|+++|++||.|+++++..+ +|||||+|.+.++|++|++.||+..|+ |++|+|.++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 4579999999999999999999999999999999864 689999999999999999999999999 999999999
Q ss_pred ccCCC
Q psy15515 120 IKKQG 124 (242)
Q Consensus 120 ~~~~~ 124 (242)
+++..
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88754
No 113
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-19 Score=133.42 Aligned_cols=83 Identities=18% Similarity=0.364 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...++|||+||++++++++|+++|++||.|.. .++.+. +|+++|||||+|.+.++|++|++ ||+..|+|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35679999999999999999999999999888 666665 88999999999999999999998 9999999999999999
Q ss_pred ccCCCC
Q psy15515 120 IKKQGF 125 (242)
Q Consensus 120 ~~~~~~ 125 (242)
+++...
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 877543
No 114
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=126.24 Aligned_cols=81 Identities=14% Similarity=0.267 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
....++|||+||++++++++|+++|++||.|. ++++.+ +++|||||+|.+.++|++|++.||+..|+|++|+|.++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34567999999999999999999999999996 666654 57899999999999999999999999999999999999
Q ss_pred ccCCC
Q psy15515 120 IKKQG 124 (242)
Q Consensus 120 ~~~~~ 124 (242)
+++..
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 115
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.1e-19 Score=132.58 Aligned_cols=85 Identities=24% Similarity=0.257 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...++|||+||++++++++|+++|++||.|..+.+..+. +|+++|||||+|.+.++|++|++.||+..|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 345799999999999999999999999998433222222 7889999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy15515 120 IKKQGF 125 (242)
Q Consensus 120 ~~~~~~ 125 (242)
+.+...
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 987654
No 116
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=5.6e-20 Score=139.54 Aligned_cols=87 Identities=25% Similarity=0.427 Sum_probs=80.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEE--------EEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeC
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQ--------VKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFK 110 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~ 110 (242)
+...++|||+||+.++++++|+++|++||.|.. ++|+.++ +|+++|||||+|.+.++|++|++.||+..|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345679999999999999999999999999998 8999997 8999999999999999999999999999999
Q ss_pred CeEEEEeecccCCCCC
Q psy15515 111 EKRLNIAPAIKKQGFT 126 (242)
Q Consensus 111 G~~l~V~~a~~~~~~~ 126 (242)
|++|+|.+++++....
T Consensus 84 g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 84 GNPIKVSFATRRADFN 99 (116)
Confidence 9999999999876543
No 117
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=7.7e-19 Score=124.89 Aligned_cols=73 Identities=18% Similarity=0.387 Sum_probs=67.8
Q ss_pred cEEEEcCCCCCC------CHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCe-EEEE
Q psy15515 44 KRVFVGGITSTT------TEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEK-RLNI 116 (242)
Q Consensus 44 ~~lfVgnLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~-~l~V 116 (242)
++|||+|||.++ ++++|+++|++||.|.++++. ..+|+++|||||+|.+.++|++|++.|||..++|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 679999999999999999987 34899999999999999999999999999999999 8876
Q ss_pred e
Q psy15515 117 A 117 (242)
Q Consensus 117 ~ 117 (242)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 118
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=2.8e-18 Score=133.02 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCCCCCHHHHH----HHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 42 VPKRVFVGGITSTTTEDELC----ELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
..++|||+||++.+++++|+ ++|++||.|.+|.+. +++++||||||+|.+.++|++|++.|||..|.|+.|+|.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 45699999999999999876 699999999998774 368899999999999999999999999999999999999
Q ss_pred ecccCCC
Q psy15515 118 PAIKKQG 124 (242)
Q Consensus 118 ~a~~~~~ 124 (242)
|++.+..
T Consensus 106 ~a~~~~~ 112 (127)
T 2a3j_A 106 FSETPQS 112 (127)
T ss_dssp ECCCCCH
T ss_pred EccCcch
Confidence 9987653
No 119
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=5.3e-18 Score=126.03 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCE--eCCeEEEEee
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIM--FKEKRLNIAP 118 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~--i~G~~l~V~~ 118 (242)
...++|||+|||.++++++|+++|++||.|.+++++++ ||||||+|++.++|.+|++.|++.. |+|++|+|.+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 34579999999999999999999999999999999864 6999999999999999999998875 8899999999
Q ss_pred cccCC
Q psy15515 119 AIKKQ 123 (242)
Q Consensus 119 a~~~~ 123 (242)
++.+.
T Consensus 94 S~~k~ 98 (100)
T 3r27_A 94 STSQK 98 (100)
T ss_dssp CSCSC
T ss_pred ccccc
Confidence 98764
No 120
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.75 E-value=4.9e-18 Score=127.71 Aligned_cols=79 Identities=27% Similarity=0.498 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
.+...++|||+||+.++++++|+++|++||.|.++++. +|||||+|.+.++|++|++.|||..++|+.|+|.+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34566899999999999999999999999999999997 59999999999999999999999999999999999
Q ss_pred cccCCC
Q psy15515 119 AIKKQG 124 (242)
Q Consensus 119 a~~~~~ 124 (242)
++.+..
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 987654
No 121
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=7.9e-18 Score=126.01 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCC--EeCCeEEEEeec
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNI--MFKEKRLNIAPA 119 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~--~i~G~~l~V~~a 119 (242)
..++|||+||++++++++|+++|++||.|.++.++.+ ||||||+|++.++|++|++.|++. .|+|++|+|.++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 3569999999999999999999999999999999864 699999999999999999988654 599999999999
Q ss_pred ccCCCC
Q psy15515 120 IKKQGF 125 (242)
Q Consensus 120 ~~~~~~ 125 (242)
+.+...
T Consensus 89 ~~~~~~ 94 (104)
T 1wex_A 89 TSKRIT 94 (104)
T ss_dssp SSSSCC
T ss_pred cCcccc
Confidence 877543
No 122
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=1.8e-18 Score=126.74 Aligned_cols=82 Identities=17% Similarity=0.333 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEE
Q psy15515 41 VVPKRVFVGGITSTTTEDELC----ELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNI 116 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V 116 (242)
...++|||+|||.++++++|+ ++|++||.|.++++.. +|+++|||||+|.+.++|++|++.|||..++|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 356799999999999999999 9999999999998874 5678899999999999999999999999999999999
Q ss_pred eecccCCC
Q psy15515 117 APAIKKQG 124 (242)
Q Consensus 117 ~~a~~~~~ 124 (242)
.+++++..
T Consensus 84 ~~a~~~~~ 91 (97)
T 1nu4_A 84 QYAKTDSD 91 (97)
T ss_dssp EECSSCCT
T ss_pred EEccCCCc
Confidence 99987653
No 123
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.9e-18 Score=124.69 Aligned_cols=79 Identities=32% Similarity=0.541 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...++|||+|||+++++++|+++|++||.|.++++.++ +|||||+|.+.++|++|++.||+..|+|++|+|.+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 35579999999999999999999999999999999865 6999999999999999999999999999999999998
Q ss_pred cCCC
Q psy15515 121 KKQG 124 (242)
Q Consensus 121 ~~~~ 124 (242)
++..
T Consensus 88 ~~~~ 91 (99)
T 2cpj_A 88 HSAS 91 (99)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8754
No 124
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=5.4e-19 Score=132.50 Aligned_cols=82 Identities=13% Similarity=0.289 Sum_probs=76.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCC---eEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGI---VKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
....+|||+|||+++++++|+++|+.||. |.+|+|+.++.|+++|||||+|.+.++|++||+ +|+..|+|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 45679999999999999999999999988 899999999889999999999999999999998 99999999999999
Q ss_pred ecccCC
Q psy15515 118 PAIKKQ 123 (242)
Q Consensus 118 ~a~~~~ 123 (242)
++.++.
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 988653
No 125
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=7.8e-18 Score=126.45 Aligned_cols=76 Identities=24% Similarity=0.507 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITST-TTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
..++|||+||+++ +++++|+++|++||.|.+|++ ++|||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3579999999999 999999999999999999998 36999999999999999999999999999999999998
Q ss_pred cCCC
Q psy15515 121 KKQG 124 (242)
Q Consensus 121 ~~~~ 124 (242)
.+..
T Consensus 99 ~~~~ 102 (110)
T 1wf1_A 99 EPKP 102 (110)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6544
No 126
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=2.7e-18 Score=125.64 Aligned_cols=80 Identities=24% Similarity=0.375 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...++|||+||+.++++++|+++|++||.|..+ ..+|+++|||||+|.+.++|++|++.||+..|+|+.|+|.++.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 456799999999999999999999999987665 3378899999999999999999999999999999999999998
Q ss_pred cCCC
Q psy15515 121 KKQG 124 (242)
Q Consensus 121 ~~~~ 124 (242)
++..
T Consensus 90 ~~~~ 93 (96)
T 1fjc_A 90 EKGG 93 (96)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7754
No 127
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-17 Score=121.27 Aligned_cols=77 Identities=21% Similarity=0.364 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcC--CCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQY--GIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
...++|||+||++++++++|+++|++| |.|.++++. +|||||+|.+.++|++|++.||+..|+|++|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 356799999999999999999999999 999999875 58999999999999999999999999999999999
Q ss_pred cccCCC
Q psy15515 119 AIKKQG 124 (242)
Q Consensus 119 a~~~~~ 124 (242)
++++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpd_A 86 AKPVDK 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987754
No 128
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.74 E-value=1.3e-17 Score=122.88 Aligned_cols=77 Identities=23% Similarity=0.498 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITS-TTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
....++|||+||++ ++++++|+++|++||.|.++++. +|||||+|.+.++|++|++.||+..++|++|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44567999999998 99999999999999999999983 69999999999999999999999999999999999
Q ss_pred cccCC
Q psy15515 119 AIKKQ 123 (242)
Q Consensus 119 a~~~~ 123 (242)
++.+.
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98653
No 129
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=5.7e-19 Score=123.35 Aligned_cols=74 Identities=28% Similarity=0.570 Sum_probs=70.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 45 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
+|||+|||.++++++|+++|++||.|.++++..++ +|+++|||||+|.+.++|++|++. ++..++|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999998 899999999999999999999975 889999999999875
No 130
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=4.1e-18 Score=125.88 Aligned_cols=77 Identities=22% Similarity=0.423 Sum_probs=72.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccCC
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQ 123 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~~ 123 (242)
++|||+|||.++++++|+++|++||.|.++++..+ ++|||||+|.+.++|++|++.||+..++|+.|+|.+++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 48999999999999999999999999999999887 68999999999999999999999999999999999999876
Q ss_pred C
Q psy15515 124 G 124 (242)
Q Consensus 124 ~ 124 (242)
.
T Consensus 77 ~ 77 (101)
T 2hvz_A 77 R 77 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 131
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.2e-18 Score=122.71 Aligned_cols=79 Identities=16% Similarity=0.361 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCC-eEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCC-CEeCCeEEEEee
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGI-VKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDN-IMFKEKRLNIAP 118 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~-~~i~G~~l~V~~ 118 (242)
...++|||+||++++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||+ ..|+|++|+|.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 34569999999999999999999999999 6655553 479999999999999999999999 999999999999
Q ss_pred cccCCCC
Q psy15515 119 AIKKQGF 125 (242)
Q Consensus 119 a~~~~~~ 125 (242)
++++...
T Consensus 80 a~~~~~~ 86 (93)
T 2cqh_A 80 SVSKKLR 86 (93)
T ss_dssp CCCCCCC
T ss_pred ccCcccc
Confidence 9877543
No 132
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=126.45 Aligned_cols=79 Identities=14% Similarity=0.309 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcC--CCEeCCeEEEEee
Q psy15515 42 VPKRVFVGGITST-TTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD--NIMFKEKRLNIAP 118 (242)
Q Consensus 42 ~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~--~~~i~G~~l~V~~ 118 (242)
..++|||+||+++ +++++|+++|++||.|.+|+|++ +||||||+|++.++|++|++.|+ +.+|+|++|+|.+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4679999999998 99999999999999999999975 47999999999999999999885 4569999999999
Q ss_pred cccCCCC
Q psy15515 119 AIKKQGF 125 (242)
Q Consensus 119 a~~~~~~ 125 (242)
++.+...
T Consensus 99 a~~~~~~ 105 (112)
T 1x4f_A 99 SEKYKKL 105 (112)
T ss_dssp ECSCSSS
T ss_pred Ccccccc
Confidence 9877543
No 133
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-18 Score=133.21 Aligned_cols=80 Identities=19% Similarity=0.271 Sum_probs=73.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCe----EEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIV----KQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i----~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
...+|||+|||+++++++|+++|++||.| .+|+|+.+++|+++|||||+|.+.++|++||+. |+..|+||.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 45699999999999999999999999875 689999998999999999999999999999986 9999999999999
Q ss_pred ecccC
Q psy15515 118 PAIKK 122 (242)
Q Consensus 118 ~a~~~ 122 (242)
.+..+
T Consensus 101 ~a~~~ 105 (123)
T 2dha_A 101 RSTAA 105 (123)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88655
No 134
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.5e-17 Score=119.55 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...++|||+|| ++++++|+++|++||.|.+|+|. +++|||||+|.+.++|++|++.||+..|+|++|+|.+++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 35579999996 89999999999999999999985 367999999999999999999999999999999999998
Q ss_pred cCCCC
Q psy15515 121 KKQGF 125 (242)
Q Consensus 121 ~~~~~ 125 (242)
++...
T Consensus 86 ~~~~~ 90 (97)
T 1x5p_A 86 KQPML 90 (97)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 77543
No 135
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=1.5e-17 Score=138.82 Aligned_cols=82 Identities=23% Similarity=0.354 Sum_probs=76.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
..++|||+|||++++|++|+++|++||.|++|+|++|+ +|+++|||||+|.+.++|++|++.+|+..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 34689999999999999999999999999999999998 89999999999999999999999999999999999999987
Q ss_pred cCC
Q psy15515 121 KKQ 123 (242)
Q Consensus 121 ~~~ 123 (242)
...
T Consensus 94 ~~~ 96 (213)
T 4f02_A 94 RDP 96 (213)
T ss_dssp CCT
T ss_pred ccc
Confidence 543
No 136
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=1.3e-17 Score=126.03 Aligned_cols=80 Identities=14% Similarity=0.338 Sum_probs=74.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
..++|||+|||+++++++|+++|+.||.|.++.++.+ +.++|||||+|.+.++|++|++.|||..++|+.|+|.++.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4579999999999999999999999999999999875 45689999999999999999999999999999999999986
Q ss_pred CC
Q psy15515 122 KQ 123 (242)
Q Consensus 122 ~~ 123 (242)
+.
T Consensus 85 ~~ 86 (115)
T 3lqv_A 85 NR 86 (115)
T ss_dssp HH
T ss_pred Ch
Confidence 54
No 137
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.7e-17 Score=129.43 Aligned_cols=82 Identities=23% Similarity=0.404 Sum_probs=77.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
....++|||+|||.++++++|+++|++||.|.++++..++ +|.++|||||+|.+.++|++|++.|||..++|++|+|.|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 4456799999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ccc
Q psy15515 119 AIK 121 (242)
Q Consensus 119 a~~ 121 (242)
|++
T Consensus 164 a~~ 166 (166)
T 3md3_A 164 AAK 166 (166)
T ss_dssp SCC
T ss_pred cCC
Confidence 864
No 138
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=1.1e-18 Score=137.29 Aligned_cols=82 Identities=18% Similarity=0.274 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...++|||+|||+++++++|+++|++|| |++|+|+.|++|+++|||||+|++.++|++|| .+|+.+|+|+.|+|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 3456999999999999999999999999 77999999999999999999999999999999 889999999999999988
Q ss_pred cCCC
Q psy15515 121 KKQG 124 (242)
Q Consensus 121 ~~~~ 124 (242)
.+..
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7754
No 139
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=1.1e-17 Score=120.72 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
..++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.||+.+++|++|+|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 45689999999999999999999999 99999885 4789999999999999999999999999999999999876
Q ss_pred CC
Q psy15515 122 KQ 123 (242)
Q Consensus 122 ~~ 123 (242)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 140
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.2e-17 Score=119.02 Aligned_cols=77 Identities=22% Similarity=0.407 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
..++|||+||++++++++|+++|++||.|.+| +.++ +|+ ||||+|.+.++|++|++ ||+..|+|+.|+|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45699999999999999999999999999987 5555 554 99999999999999999 99999999999999987
Q ss_pred cCCC
Q psy15515 121 KKQG 124 (242)
Q Consensus 121 ~~~~ 124 (242)
.+..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 6654
No 141
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.72 E-value=3.9e-17 Score=129.39 Aligned_cols=81 Identities=22% Similarity=0.448 Sum_probs=77.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
.++|||+|||.++++++|+++|+.||.|.+++++.++ +|+++|||||+|.+.++|++|++.|++..++|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4699999999999999999999999999999999998 999999999999999999999999999999999999999875
Q ss_pred CC
Q psy15515 122 KQ 123 (242)
Q Consensus 122 ~~ 123 (242)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 142
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=1.3e-17 Score=136.15 Aligned_cols=83 Identities=18% Similarity=0.367 Sum_probs=78.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...++|||+||++++++++|+++|++||.|++|.|..+++|+++|||||+|.+.++|++|++.||+..|+|+.|+|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 34679999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred cCC
Q psy15515 121 KKQ 123 (242)
Q Consensus 121 ~~~ 123 (242)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 653
No 143
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=1.3e-17 Score=131.88 Aligned_cols=80 Identities=19% Similarity=0.388 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
....++|||+||++++++++|+++|++||.|.+++++.+ ++|||||+|.+.++|++|++.||+..|+|++|+|.++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 445689999999999999999999999999999999886 5899999999999999999999999999999999999
Q ss_pred ccCC
Q psy15515 120 IKKQ 123 (242)
Q Consensus 120 ~~~~ 123 (242)
+++.
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 144
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=5.3e-18 Score=131.27 Aligned_cols=80 Identities=19% Similarity=0.286 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeE--EEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVK--QVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
...++|||+|||+++++++|+++|+.| .|+ +|+|+.|++|+++|||||+|.+.++|++||+. ++..|+||.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 456799999999999999999999999 677 89999998999999999999999999999975 77999999999998
Q ss_pred cccC
Q psy15515 119 AIKK 122 (242)
Q Consensus 119 a~~~ 122 (242)
+..+
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 145
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=7.6e-18 Score=127.19 Aligned_cols=77 Identities=17% Similarity=0.159 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
..++|||+|||+++++++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|++.||+..|+|+.|+|.|+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 456999999999999999999999999999999875 479999999999999999999999999999999999986
Q ss_pred CC
Q psy15515 122 KQ 123 (242)
Q Consensus 122 ~~ 123 (242)
..
T Consensus 84 ~~ 85 (111)
T 1whx_A 84 GV 85 (111)
T ss_dssp TT
T ss_pred Cc
Confidence 54
No 146
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.72 E-value=1.8e-16 Score=136.96 Aligned_cols=82 Identities=20% Similarity=0.347 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEE
Q psy15515 40 TVVPKRVFVGGITSTTTEDELC----ELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLN 115 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~ 115 (242)
....++|||+||++++++++|+ ++|++||.|.+|++.+ +|+++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 3456799999999999999976 8999999999999876 788999999999999999999999999999999999
Q ss_pred EeecccCC
Q psy15515 116 IAPAIKKQ 123 (242)
Q Consensus 116 V~~a~~~~ 123 (242)
|.+++.+.
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99997654
No 147
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.2e-17 Score=122.50 Aligned_cols=78 Identities=23% Similarity=0.435 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITS-TTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...++|||+|||+ ++++++|+++|++||.|.++++. +|||||+|.+.++|++|++.||+..++|++|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 3567999999998 99999999999999999999984 699999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy15515 120 IKKQGF 125 (242)
Q Consensus 120 ~~~~~~ 125 (242)
+.+...
T Consensus 81 ~~~~~~ 86 (96)
T 2kvi_A 81 SSNARP 86 (96)
T ss_dssp ECCCC-
T ss_pred CcCCCC
Confidence 876543
No 148
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=3.1e-17 Score=130.41 Aligned_cols=81 Identities=30% Similarity=0.461 Sum_probs=77.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
.++|||+|||.++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|++|++.|++..++|++|+|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 4699999999999999999999999999999999997 899999999999999999999999999999999999999886
Q ss_pred CC
Q psy15515 122 KQ 123 (242)
Q Consensus 122 ~~ 123 (242)
..
T Consensus 83 ~~ 84 (168)
T 1b7f_A 83 GG 84 (168)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 149
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=5.1e-17 Score=128.57 Aligned_cols=80 Identities=21% Similarity=0.400 Sum_probs=75.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccCC
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQ 123 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~~ 123 (242)
++|||+|||.++++++|+++|++||.|.++++..+++++++|||||+|.+.++|++|++.|++..+.|+.|+|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999987654
No 150
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=5.9e-17 Score=134.06 Aligned_cols=82 Identities=20% Similarity=0.470 Sum_probs=78.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
..++|||+||+.++++++|+++|++||.|+++++..++ +|+++|||||+|.+.++|++|++.||+..|+|+.|+|.++.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 34699999999999999999999999999999999998 89999999999999999999999999999999999999998
Q ss_pred cCC
Q psy15515 121 KKQ 123 (242)
Q Consensus 121 ~~~ 123 (242)
.+.
T Consensus 204 ~~~ 206 (216)
T 2qfj_A 204 TPP 206 (216)
T ss_dssp SCS
T ss_pred CCC
Confidence 764
No 151
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.71 E-value=5.8e-17 Score=129.48 Aligned_cols=80 Identities=24% Similarity=0.490 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...++|||+|||.++++++|+++|++||.|.++++..++ +|+++|||||+|.+.++|++|++.|||..++|++|+|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 346799999999999999999999999999999999997 9999999999999999999999999999999999999997
Q ss_pred c
Q psy15515 120 I 120 (242)
Q Consensus 120 ~ 120 (242)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 152
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=120.26 Aligned_cols=79 Identities=16% Similarity=0.265 Sum_probs=71.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEE-EEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQV-KIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v-~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
..++|||+|||+++++++|+++|++||.|.++ .++.++. .|.|||+|.+.++|++|++.||+..|+|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45689999999999999999999999999999 4887761 2349999999999999999999999999999999998
Q ss_pred cCC
Q psy15515 121 KKQ 123 (242)
Q Consensus 121 ~~~ 123 (242)
++.
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 774
No 153
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.3e-17 Score=127.28 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=71.0
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcC----HHH----HHHHHH--HcCCCE
Q psy15515 44 KRVFVGGI----TSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDS----EEE----AKRLQK--DSDNIM 108 (242)
Q Consensus 44 ~~lfVgnL----p~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s----~e~----A~~Al~--~l~~~~ 108 (242)
++|||+|| ++.++|++|+++|+.||+|.+++++.|+ ||+++|||||+|.+ .++ |.+|++ .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999 99999999999996 333 888988 789999
Q ss_pred eCCeEEEEeeccc
Q psy15515 109 FKEKRLNIAPAIK 121 (242)
Q Consensus 109 i~G~~l~V~~a~~ 121 (242)
|+|++|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998654
No 154
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=3.5e-17 Score=136.62 Aligned_cols=81 Identities=22% Similarity=0.525 Sum_probs=75.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccC
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKK 122 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~ 122 (242)
.++|||+||++++++++|+++|++||.|++++|++|. +.++|||||+|.+.++|++|++.|||.+|+|++|+|.+++++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 4689999999999999999999999999999999986 347999999999999999999999999999999999999876
Q ss_pred CC
Q psy15515 123 QG 124 (242)
Q Consensus 123 ~~ 124 (242)
..
T Consensus 182 ~~ 183 (213)
T 4f02_A 182 KE 183 (213)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 155
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.71 E-value=7.7e-17 Score=131.62 Aligned_cols=85 Identities=22% Similarity=0.450 Sum_probs=80.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
....++|||+||+.++++++|+++|++||.|.++++..++ +|+++|||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cccCCC
Q psy15515 119 AIKKQG 124 (242)
Q Consensus 119 a~~~~~ 124 (242)
++++..
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987754
No 156
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.1e-17 Score=124.01 Aligned_cols=77 Identities=21% Similarity=0.355 Sum_probs=70.3
Q ss_pred CCcEEEE--cCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEe-----CCeEE
Q psy15515 42 VPKRVFV--GGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMF-----KEKRL 114 (242)
Q Consensus 42 ~~~~lfV--gnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i-----~G~~l 114 (242)
..++||| |||++++++++|+++|++||.|.++.+..+ ||||||+|++.++|++|++.|||.++ .|++|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 4568999 889999999999999999999999988653 69999999999999999999999999 79999
Q ss_pred EEeecccCC
Q psy15515 115 NIAPAIKKQ 123 (242)
Q Consensus 115 ~V~~a~~~~ 123 (242)
.|.+++...
T Consensus 99 ~v~~a~~~p 107 (114)
T 2cq2_A 99 YLNFVEKVQ 107 (114)
T ss_dssp EEEEESCCC
T ss_pred EEEecccCc
Confidence 999998654
No 157
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=4.4e-17 Score=131.20 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCC--eEEEEeec
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKE--KRLNIAPA 119 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G--~~l~V~~a 119 (242)
...+|||+||++.+++++|+++|++||.|++|+|..+. ++|||||+|++.++|++|++.|||.+|.| ++|+|.|+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 34589999999999999999999999999999997643 57899999999999999999999999965 99999999
Q ss_pred ccCC
Q psy15515 120 IKKQ 123 (242)
Q Consensus 120 ~~~~ 123 (242)
+.+.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 9774
No 158
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=2.2e-17 Score=129.58 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEE------EEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeE
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQV------KIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKR 113 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v------~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~ 113 (242)
....++|||+||++++++++|+++|++||.|..+ .+....+|+++|||||+|.+.++|++|++.|||..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3456799999999999999999999999998764 1222237889999999999999999999999999999999
Q ss_pred EEEeecccCCC
Q psy15515 114 LNIAPAIKKQG 124 (242)
Q Consensus 114 l~V~~a~~~~~ 124 (242)
|+|.+++....
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999987654
No 159
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=7.4e-17 Score=117.06 Aligned_cols=77 Identities=30% Similarity=0.384 Sum_probs=63.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCE--eCCeEEEEe
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIM--FKEKRLNIA 117 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~--i~G~~l~V~ 117 (242)
.....+|||+|||+++++++|+++|++||.|.+++|+++ +||||||+|++.++|++ +++.. ++|++|+|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 345679999999999999999999999999999999875 68999999999999984 45554 569999999
Q ss_pred ecccCCC
Q psy15515 118 PAIKKQG 124 (242)
Q Consensus 118 ~a~~~~~ 124 (242)
++.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9987753
No 160
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.70 E-value=8.7e-17 Score=131.11 Aligned_cols=85 Identities=29% Similarity=0.606 Sum_probs=74.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
..++|||+|||.++++++|+++|+.||.|.+++++.++ +|+++|||||+|.+.++|++|++. ++..|+|+.|+|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 45799999999999999999999999999999999998 899999999999999999999976 8999999999999999
Q ss_pred cCCCCCC
Q psy15515 121 KKQGFTG 127 (242)
Q Consensus 121 ~~~~~~~ 127 (242)
++.....
T Consensus 182 ~k~~~~~ 188 (196)
T 1l3k_A 182 SKQEMAS 188 (196)
T ss_dssp -------
T ss_pred ChhHhcc
Confidence 8876543
No 161
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=2.2e-16 Score=145.74 Aligned_cols=84 Identities=25% Similarity=0.446 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...++|||+||++++++++|+++|++||.|+.|.|+.++ +|+++|||||+|.+.++|++||+.|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345799999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred ccCCC
Q psy15515 120 IKKQG 124 (242)
Q Consensus 120 ~~~~~ 124 (242)
..+..
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87654
No 162
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.70 E-value=8.8e-17 Score=131.06 Aligned_cols=83 Identities=22% Similarity=0.450 Sum_probs=76.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
....++|||+|||+++++++|+++|+.||.|.+|+++.++ +|+++|||||+|.+.++|++|++. ++..++|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 3456799999999999999999999999999999999998 899999999999999999999976 89999999999999
Q ss_pred cccCC
Q psy15515 119 AIKKQ 123 (242)
Q Consensus 119 a~~~~ 123 (242)
+..+.
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 87654
No 163
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.69 E-value=1.3e-16 Score=123.83 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=70.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccE-EEEEEcCHHHHHHHHHHcCCCEeCC--eEEEEeecc
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGY-GFITFDSEEEAKRLQKDSDNIMFKE--KRLNIAPAI 120 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~-gFV~F~s~e~A~~Al~~l~~~~i~G--~~l~V~~a~ 120 (242)
-+|||+||++.+++++|+++|++||.|.+|++..+ .+|| |||+|.+.++|++|++.|||..|.| +.|+|.|++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 47899999999999999999999999999998764 3688 9999999999999999999999988 999999998
Q ss_pred cCC
Q psy15515 121 KKQ 123 (242)
Q Consensus 121 ~~~ 123 (242)
.+.
T Consensus 105 ~~~ 107 (130)
T 3zzy_A 105 LTS 107 (130)
T ss_dssp CSS
T ss_pred CCc
Confidence 774
No 164
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=3e-17 Score=130.55 Aligned_cols=79 Identities=33% Similarity=0.703 Sum_probs=75.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
.++|||+|||.++++++|+++|++||.|.++++..++ +|+++|||||+|.+.++|++|++ +++..++|++|+|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 4699999999999999999999999999999999997 89999999999999999999997 899999999999999987
Q ss_pred C
Q psy15515 122 K 122 (242)
Q Consensus 122 ~ 122 (242)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 6
No 165
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.69 E-value=5.4e-17 Score=123.19 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=67.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeE-----EEE
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKR-----LNI 116 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~-----l~V 116 (242)
...+|||+||++++++++|+++|++||.|++|+|+.+ |||||+|++.++|++||+.||+.+|+|++ |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 4569999999999999999999999999999999875 89999999999999999999999999998 777
Q ss_pred eecccCCC
Q psy15515 117 APAIKKQG 124 (242)
Q Consensus 117 ~~a~~~~~ 124 (242)
..+..+..
T Consensus 89 ~~~~~~~~ 96 (115)
T 3beg_B 89 KVDGPRSP 96 (115)
T ss_dssp EECC----
T ss_pred ccCCCCCC
Confidence 77766543
No 166
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.3e-17 Score=116.60 Aligned_cols=78 Identities=36% Similarity=0.493 Sum_probs=67.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
..++|||+|||+++++++|+++|++||.|.+++++.+ ++|||||+|++.++|++++.. ...++|++|+|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 4679999999999999999999999999999999875 689999999999999865321 3456999999999988
Q ss_pred CCCC
Q psy15515 122 KQGF 125 (242)
Q Consensus 122 ~~~~ 125 (242)
+...
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=2.1e-16 Score=125.55 Aligned_cols=83 Identities=24% Similarity=0.466 Sum_probs=77.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCC--eE
Q psy15515 37 KYGTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKE--KR 113 (242)
Q Consensus 37 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G--~~ 113 (242)
.......++|||+|||.++++++|+++|++||.|.++++..++ +|+++|||||+|.+.++|.+|++.|||..++| ++
T Consensus 83 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 162 (168)
T 1b7f_A 83 GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQP 162 (168)
T ss_dssp CSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSC
T ss_pred CcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeE
Confidence 3344566899999999999999999999999999999999998 89999999999999999999999999999988 99
Q ss_pred EEEeec
Q psy15515 114 LNIAPA 119 (242)
Q Consensus 114 l~V~~a 119 (242)
|+|.+|
T Consensus 163 l~V~~A 168 (168)
T 1b7f_A 163 LSVRLA 168 (168)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999986
No 168
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=120.85 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=69.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-C---CCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEE
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-A---GISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNI 116 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~---g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V 116 (242)
...++|||+||++++++++|+++|++||.|. +.++.++ + |+++|||||+|++.++|++||+.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3457999999999999999999999999999 8888776 5 7999999999999999999999984 478888888
Q ss_pred eecccC
Q psy15515 117 APAIKK 122 (242)
Q Consensus 117 ~~a~~~ 122 (242)
..+...
T Consensus 83 ~~~~~~ 88 (114)
T 2dnl_A 83 VSSPTI 88 (114)
T ss_dssp ECCSSS
T ss_pred ccCCCc
Confidence 765433
No 169
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.67 E-value=2.1e-16 Score=131.82 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=72.6
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGIT-STTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp-~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...+|||+||+ +.+++++|+++|++||.|.+|+++.+ .+|||||+|.+.++|++||+.|||..+.|+.|+|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 45699999999 89999999999999999999999876 37999999999999999999999999999999999997
Q ss_pred cCC
Q psy15515 121 KKQ 123 (242)
Q Consensus 121 ~~~ 123 (242)
.+.
T Consensus 79 ~~~ 81 (205)
T 3tyt_A 79 QPA 81 (205)
T ss_dssp CSC
T ss_pred CCc
Confidence 654
No 170
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=3.1e-16 Score=120.94 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=68.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccE-EEEEEcCHHHHHHHHHHcCCCEeCC--eEEEEeeccc
Q psy15515 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGY-GFITFDSEEEAKRLQKDSDNIMFKE--KRLNIAPAIK 121 (242)
Q Consensus 45 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~-gFV~F~s~e~A~~Al~~l~~~~i~G--~~l~V~~a~~ 121 (242)
.|||+||++.+++++|+++|++||.|++|+|... .|| |||+|.+.++|++|++.|||.+|.| +.|+|.+|+.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 5789999999999999999999999999999752 386 9999999999999999999999988 6999999997
Q ss_pred CC
Q psy15515 122 KQ 123 (242)
Q Consensus 122 ~~ 123 (242)
+.
T Consensus 102 ~~ 103 (124)
T 2e5i_A 102 TR 103 (124)
T ss_dssp SC
T ss_pred Cc
Confidence 75
No 171
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=1.4e-16 Score=131.88 Aligned_cols=80 Identities=21% Similarity=0.441 Sum_probs=73.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
.++|||+|||.++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|++|++.||+..|+|+.|+|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 4599999999999999999999999999999999998 899999999999999999999999999999999999988765
Q ss_pred C
Q psy15515 122 K 122 (242)
Q Consensus 122 ~ 122 (242)
.
T Consensus 108 ~ 108 (216)
T 2qfj_A 108 I 108 (216)
T ss_dssp C
T ss_pred c
Confidence 4
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=2.1e-16 Score=126.24 Aligned_cols=80 Identities=24% Similarity=0.439 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeC---CeEEEEe
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFK---EKRLNIA 117 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~---G~~l~V~ 117 (242)
...++|||+|||.++++++|+++|++||.|.++++..+.+|+++|||||+|.+.++|++|++.|||..+. |++|+|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 3567999999999999999999999999999999999999999999999999999999999999998776 4999999
Q ss_pred ecc
Q psy15515 118 PAI 120 (242)
Q Consensus 118 ~a~ 120 (242)
||.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 173
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=2.8e-16 Score=124.40 Aligned_cols=81 Identities=33% Similarity=0.550 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeE--EE
Q psy15515 39 GTVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKR--LN 115 (242)
Q Consensus 39 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~--l~ 115 (242)
.....++|||+|||.++++++|+++|++||.|.++++..+. +|+++|||||+|.+.++|++|++.|||..++|+. |+
T Consensus 84 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~ 163 (167)
T 1fxl_A 84 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 163 (167)
T ss_dssp GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceE
Confidence 34456799999999999999999999999999999999998 8999999999999999999999999999999975 88
Q ss_pred Eeec
Q psy15515 116 IAPA 119 (242)
Q Consensus 116 V~~a 119 (242)
|.||
T Consensus 164 v~~A 167 (167)
T 1fxl_A 164 VKFA 167 (167)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8876
No 174
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.66 E-value=2.4e-16 Score=112.89 Aligned_cols=72 Identities=31% Similarity=0.527 Sum_probs=67.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcC----C-------CeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEe
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQY----G-------IVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMF 109 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i 109 (242)
...++|||+|||+++++++|+++|++| | .|.++++..+ +|||||+|.+.++|++|+ .||+..+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 346799999999999999999999999 8 8999999865 699999999999999999 9999999
Q ss_pred CCeEEEEee
Q psy15515 110 KEKRLNIAP 118 (242)
Q Consensus 110 ~G~~l~V~~ 118 (242)
+|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 175
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.2e-16 Score=113.38 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=66.8
Q ss_pred EEEEcCCCCCCCHHH----HHHHhhcC-CCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 45 RVFVGGITSTTTEDE----LCELFSQY-GIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 45 ~lfVgnLp~~~te~~----L~~~F~~~-G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
.|||+||++++++++ |+++|++| |+|.+| +| |+|||+|.+.++|++|++.|+|.++.||+|+|.+|
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 499999999999987 55899999 599998 23 99999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q psy15515 120 IKKQGFTG 127 (242)
Q Consensus 120 ~~~~~~~~ 127 (242)
+.+...-.
T Consensus 82 ~~~sd~~~ 89 (96)
T 2diu_A 82 PKNRELCE 89 (96)
T ss_dssp CCSCCCCC
T ss_pred CCCcceeE
Confidence 98876543
No 176
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.65 E-value=5.2e-16 Score=128.29 Aligned_cols=80 Identities=25% Similarity=0.315 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeeccc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIK 121 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~ 121 (242)
..++|||+|||+++++++|+++|++||.|.+|+|.++.+|+++|||||+|++.++|++|++.+ +..++|+.|+|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 347999999999999999999999999999999999989999999999999999999999765 4699999999999775
Q ss_pred C
Q psy15515 122 K 122 (242)
Q Consensus 122 ~ 122 (242)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 4
No 177
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.65 E-value=3.6e-16 Score=119.90 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=70.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...++|||+|| ++++++|+++|++||.|.+|++. +++|||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 45679999996 69999999999999999999986 367999999999999999999999999999999999998
Q ss_pred cCCC
Q psy15515 121 KKQG 124 (242)
Q Consensus 121 ~~~~ 124 (242)
++..
T Consensus 110 ~~~~ 113 (121)
T 2bz2_A 110 KQPM 113 (121)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7754
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=6.3e-16 Score=123.46 Aligned_cols=82 Identities=32% Similarity=0.506 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CC--CcccEEEEEEcCHHHHHHHHHHcCCCEeC---CeEEE
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AG--ISKGYGFITFDSEEEAKRLQKDSDNIMFK---EKRLN 115 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g--~skg~gFV~F~s~e~A~~Al~~l~~~~i~---G~~l~ 115 (242)
+.++|||+|||+++++++|+++|++||.|.++++++++ +| +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45799999999999999999999999999999999998 54 89999999999999999999999998876 67888
Q ss_pred EeecccCC
Q psy15515 116 IAPAIKKQ 123 (242)
Q Consensus 116 V~~a~~~~ 123 (242)
+.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88877654
No 179
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=3.7e-16 Score=124.19 Aligned_cols=79 Identities=33% Similarity=0.632 Sum_probs=73.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
+.++|||+|||+++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|++|++. +..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 35799999999999999999999999999999999998 899999999999999999999984 678999999999886
Q ss_pred cC
Q psy15515 121 KK 122 (242)
Q Consensus 121 ~~ 122 (242)
.+
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 180
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.63 E-value=1.9e-15 Score=113.14 Aligned_cols=81 Identities=19% Similarity=0.118 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCC-----CCCHHHHHHHhhcCCCeEEEEEeeCC--CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEE
Q psy15515 42 VPKRVFVGGITS-----TTTEDELCELFSQYGIVKQVKIVVDR--AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRL 114 (242)
Q Consensus 42 ~~~~lfVgnLp~-----~~te~~L~~~F~~~G~i~~v~i~~~~--~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l 114 (242)
..+.|+|.||-. +-++++|++.|++||.|+++.|+.++ +++++|||||+|.+.++|++|++.|||..++||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 356899999952 23679999999999999999999986 37899999999999999999999999999999999
Q ss_pred EEeecccC
Q psy15515 115 NIAPAIKK 122 (242)
Q Consensus 115 ~V~~a~~~ 122 (242)
+|.++...
T Consensus 87 ~v~~a~~~ 94 (105)
T 2pe8_A 87 KACFYNLD 94 (105)
T ss_dssp EEEECCHH
T ss_pred EEEEcCHH
Confidence 99999754
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.63 E-value=9.3e-16 Score=123.07 Aligned_cols=78 Identities=23% Similarity=0.360 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...++|||+|||.++++++|+++|++||.|..+ ..+|+++|||||+|.+.++|++|++.|||..|+|+.|+|.|+.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 356799999999999999999999999987665 4588999999999999999999999999999999999999998
Q ss_pred cC
Q psy15515 121 KK 122 (242)
Q Consensus 121 ~~ 122 (242)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.62 E-value=2e-15 Score=130.56 Aligned_cols=84 Identities=15% Similarity=0.286 Sum_probs=79.4
Q ss_pred CCCcEEEEcCCCCCC-CHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 41 VVPKRVFVGGITSTT-TEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~-te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
...++|||+|||.++ ++++|+++|+.||.|.+++|..+.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|.++
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 261 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFC 261 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEe
Confidence 456799999999995 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q psy15515 120 IKKQG 124 (242)
Q Consensus 120 ~~~~~ 124 (242)
.++..
T Consensus 262 ~~~~~ 266 (284)
T 3smz_A 262 APGPP 266 (284)
T ss_dssp CSSSC
T ss_pred cCCCc
Confidence 87764
No 183
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=6.6e-15 Score=127.13 Aligned_cols=78 Identities=24% Similarity=0.347 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeC-CeEEEEee
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFK-EKRLNIAP 118 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~-G~~l~V~~ 118 (242)
....++|||+||+.++++++|+++|++||.|++++++.++ +|||||+|.+.++|++|++.|||..|+ |+.|+|.|
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 3456799999999999999999999999999999999764 689999999999999999999999999 99999999
Q ss_pred ccc
Q psy15515 119 AIK 121 (242)
Q Consensus 119 a~~ 121 (242)
+++
T Consensus 280 akk 282 (282)
T 3pgw_A 280 AKK 282 (282)
T ss_pred ecC
Confidence 874
No 184
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.61 E-value=9.9e-16 Score=130.61 Aligned_cols=79 Identities=24% Similarity=0.368 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCCCC---------CHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEe-
Q psy15515 40 TVVPKRVFVGGITSTT---------TEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMF- 109 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~---------te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i- 109 (242)
+...++||||||+..+ +|++|+++|++||.|++|+|+. +||||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 4567899999999998 7999999999999999999986 479999999999999999999999999
Q ss_pred -----------CCeEEEEeecccCC
Q psy15515 110 -----------KEKRLNIAPAIKKQ 123 (242)
Q Consensus 110 -----------~G~~l~V~~a~~~~ 123 (242)
.|+.|.|.||+...
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccccCCCCEEEEEEccCCC
Confidence 89999999998664
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.60 E-value=2.2e-15 Score=130.72 Aligned_cols=81 Identities=16% Similarity=0.404 Sum_probs=76.1
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEeeCCC--CCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEe
Q psy15515 41 VVPKRVFVGGITST-TTEDELCELFSQYGIVKQVKIVVDRA--GISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIA 117 (242)
Q Consensus 41 ~~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~--g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~ 117 (242)
...++|||+|||.+ +++++|+++|+.||.|.+++++.+.. |+++|||||+|.+.++|.+|+ .|||..|+|+.|+|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 45679999999999 99999999999999999999999885 999999999999999999999 999999999999999
Q ss_pred ecccC
Q psy15515 118 PAIKK 122 (242)
Q Consensus 118 ~a~~~ 122 (242)
|++++
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99876
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.59 E-value=2.1e-15 Score=127.12 Aligned_cols=84 Identities=19% Similarity=0.310 Sum_probs=76.2
Q ss_pred CCCCCCCCcEEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEE
Q psy15515 36 PKYGTVVPKRVFVGGITS-TTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRL 114 (242)
Q Consensus 36 ~~~~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l 114 (242)
+.......++|||+|||. ++++++|+++|++||.|.+|+++.++ +|||||+|.+.++|++|++.|++..|.|+.|
T Consensus 27 p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 27 PGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp GGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred CCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 333345678999999999 99999999999999999999999875 7999999999999999999999999999999
Q ss_pred EEeecccCC
Q psy15515 115 NIAPAIKKQ 123 (242)
Q Consensus 115 ~V~~a~~~~ 123 (242)
+|.+++.+.
T Consensus 103 ~v~~a~~~~ 111 (229)
T 2adc_A 103 RITLSKHQN 111 (229)
T ss_dssp EEECCSCCC
T ss_pred EEEEecCcc
Confidence 999998664
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.59 E-value=6.6e-15 Score=127.24 Aligned_cols=82 Identities=22% Similarity=0.336 Sum_probs=78.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
..++|||+|||.++++++|+++|+.||.|..++++.++ +|+++|||||+|.+.++|++|++.|++..++|+.|+|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45699999999999999999999999999999999998 89999999999999999999999999999999999999998
Q ss_pred cCC
Q psy15515 121 KKQ 123 (242)
Q Consensus 121 ~~~ 123 (242)
.+.
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 764
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.58 E-value=7e-15 Score=120.44 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=72.9
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITS-TTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
..++|||+|||. ++++++|+++|++||.|.+|+++.++ +|||||+|.+.++|++|++.||+..++|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 357999999999 99999999999999999999998875 7899999999999999999999999999999999998
Q ss_pred cCC
Q psy15515 121 KKQ 123 (242)
Q Consensus 121 ~~~ 123 (242)
.+.
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 664
No 189
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.58 E-value=1.1e-15 Score=114.11 Aligned_cols=72 Identities=21% Similarity=0.391 Sum_probs=65.0
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEE
Q psy15515 48 VGGITSTTTEDELCELF------------SQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLN 115 (242)
Q Consensus 48 VgnLp~~~te~~L~~~F------------~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~ 115 (242)
+++|++.+++++|++.| ++||.|.+++|.++.+++++|||||+|.+.++|++|++.|||..++||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777778887777666 999999999999988889999999999999999999999999999999999
Q ss_pred Eeec
Q psy15515 116 IAPA 119 (242)
Q Consensus 116 V~~a 119 (242)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 190
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.5e-14 Score=107.79 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCC-----------HHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeC
Q psy15515 42 VPKRVFVGGITSTTT-----------EDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFK 110 (242)
Q Consensus 42 ~~~~lfVgnLp~~~t-----------e~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~ 110 (242)
..++|+|.||-.... +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|++|++.|||..|+
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 467999999944332 5899999999999999966 444 37899999999999999999999999999
Q ss_pred CeEEEEeecccCCCC
Q psy15515 111 EKRLNIAPAIKKQGF 125 (242)
Q Consensus 111 G~~l~V~~a~~~~~~ 125 (242)
|++|+|.++.++...
T Consensus 91 gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 91 GRQITAQAWDGTTDY 105 (112)
T ss_dssp TEECEEEECCSCCCS
T ss_pred CcEEEEEEeCCCCCc
Confidence 999999999877554
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.56 E-value=9.2e-16 Score=123.08 Aligned_cols=83 Identities=16% Similarity=0.360 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeec
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPA 119 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a 119 (242)
....++|||+|||.++++++|+++|++||.+..+.+....+|+++|||||+|.+.++|++|+ +||+..+.|+.|+|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecC
Confidence 44567999999999999999999999999776632322237889999999999999999999 59999999999999999
Q ss_pred ccCC
Q psy15515 120 IKKQ 123 (242)
Q Consensus 120 ~~~~ 123 (242)
..+.
T Consensus 89 ~~~~ 92 (175)
T 1fje_B 89 KGRD 92 (175)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 8764
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.54 E-value=1.3e-14 Score=125.77 Aligned_cols=83 Identities=11% Similarity=0.205 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYG-IVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
..++|||+|||.++++++|+++|+.|| .|.+++++.++.|.++|||||+|.+.++|++|++.|++..++|+.|+|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 467999999999999999999999999 9999999998888899999999999999999999999999999999999998
Q ss_pred cCCC
Q psy15515 121 KKQG 124 (242)
Q Consensus 121 ~~~~ 124 (242)
++..
T Consensus 196 ~~~~ 199 (292)
T 2ghp_A 196 PLEK 199 (292)
T ss_dssp CC--
T ss_pred CCcc
Confidence 6643
No 193
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.53 E-value=1.1e-14 Score=121.34 Aligned_cols=77 Identities=14% Similarity=0.215 Sum_probs=68.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCe--EEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCe----EEE
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIV--KQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEK----RLN 115 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i--~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~----~l~ 115 (242)
..++|||+|||+++++++|+++|++||.| .+++++.++ ++.+|||||+|.+.++|.+||+.|||.+|+|+ ++.
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 35689999999999999999999999999 899998876 55679999999999999999999999999987 466
Q ss_pred Eeec
Q psy15515 116 IAPA 119 (242)
Q Consensus 116 V~~a 119 (242)
|+++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 6654
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.53 E-value=2.5e-14 Score=122.88 Aligned_cols=82 Identities=21% Similarity=0.391 Sum_probs=75.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcC-CCEeC---CeEEEEee
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD-NIMFK---EKRLNIAP 118 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~-~~~i~---G~~l~V~~ 118 (242)
.++|||+||+..+++++|+++|+.||.|.+++++.+.+|+++|||||+|.+.++|.+|++.|| +..+. |++|.|.+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~ 175 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEP 175 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEee
Confidence 569999999999999999999999999999999999999999999999999999999999994 55554 99999999
Q ss_pred cccCCC
Q psy15515 119 AIKKQG 124 (242)
Q Consensus 119 a~~~~~ 124 (242)
+.....
T Consensus 176 ~~~~~~ 181 (261)
T 3sde_A 176 MEQFDD 181 (261)
T ss_dssp CCCEES
T ss_pred ccccCc
Confidence 986643
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.52 E-value=3e-14 Score=120.00 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=71.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeC-CeEEEEeec
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYG-IVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFK-EKRLNIAPA 119 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~-G~~l~V~~a 119 (242)
..++|||+||+.++++++|+++|++|| .|.+++++.+ .+|||||+|.+.++|++|++.|||..++ |+.|+|.|+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 357999999999999999999999999 9999999653 3799999999999999999999999999 999999999
Q ss_pred ccC
Q psy15515 120 IKK 122 (242)
Q Consensus 120 ~~~ 122 (242)
+++
T Consensus 226 ~~~ 228 (229)
T 2adc_A 226 KST 228 (229)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.51 E-value=1.9e-14 Score=117.78 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeC-CeEEEEeec
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYG-IVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFK-EKRLNIAPA 119 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~-G~~l~V~~a 119 (242)
..++|||+||+.++++++|+++|++|| .|.+++++.+ .+|||||+|.+.++|++|++.|||..++ |+.|+|.|+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 367999999999999999999999999 9999999764 3799999999999999999999999999 999999998
Q ss_pred ccC
Q psy15515 120 IKK 122 (242)
Q Consensus 120 ~~~ 122 (242)
+++
T Consensus 195 ~~~ 197 (198)
T 1qm9_A 195 KST 197 (198)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.51 E-value=5.9e-14 Score=104.95 Aligned_cols=81 Identities=14% Similarity=0.148 Sum_probs=69.9
Q ss_pred CCcEEEEcCC--CCCCC--------HHHHHHHhhcCCCeEEEEEeeCCC---CCcccEEEEEEcCHHHHHHHHHHcCCCE
Q psy15515 42 VPKRVFVGGI--TSTTT--------EDELCELFSQYGIVKQVKIVVDRA---GISKGYGFITFDSEEEAKRLQKDSDNIM 108 (242)
Q Consensus 42 ~~~~lfVgnL--p~~~t--------e~~L~~~F~~~G~i~~v~i~~~~~---g~skg~gFV~F~s~e~A~~Al~~l~~~~ 108 (242)
..+.|.+.|+ +.++. ++||++.|++||.|++++|+++.. ++++||+||+|.+.++|++|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567889988 33443 369999999999999999998873 4689999999999999999999999999
Q ss_pred eCCeEEEEeecccC
Q psy15515 109 FKEKRLNIAPAIKK 122 (242)
Q Consensus 109 i~G~~l~V~~a~~~ 122 (242)
++||.|+|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999997654
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.50 E-value=5.6e-14 Score=120.65 Aligned_cols=76 Identities=32% Similarity=0.531 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecc
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAI 120 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~ 120 (242)
...++|||+|||+++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|++|++.||+..|+|+.|+|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 34569999999999999999999999999999999754 6999999999999999999999999999999999987
Q ss_pred c
Q psy15515 121 K 121 (242)
Q Consensus 121 ~ 121 (242)
.
T Consensus 95 ~ 95 (261)
T 3sde_A 95 H 95 (261)
T ss_dssp C
T ss_pred c
Confidence 4
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.50 E-value=2.1e-13 Score=111.02 Aligned_cols=77 Identities=29% Similarity=0.488 Sum_probs=67.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcC----C-------CeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeC
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQY----G-------IVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFK 110 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~ 110 (242)
..++|||+|||+++++++|+++|++| | .|.++++. +++|||||+|.+.++|++|+ .||+..|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 35799999999999999999999999 5 56666654 45899999999999999999 89999999
Q ss_pred CeEEEEeecccCCC
Q psy15515 111 EKRLNIAPAIKKQG 124 (242)
Q Consensus 111 G~~l~V~~a~~~~~ 124 (242)
|+.|+|.++.....
T Consensus 77 g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 77 GQSLKIRRPHDYQP 90 (198)
T ss_dssp TEEEEEECCCCCCC
T ss_pred CceEEEeCCCCCCC
Confidence 99999999876643
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.50 E-value=8.1e-14 Score=111.06 Aligned_cols=75 Identities=28% Similarity=0.487 Sum_probs=67.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcC----C-------CeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeC
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQY----G-------IVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFK 110 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~ 110 (242)
+.++|||+|||.++++++|+++|++| | .|.++++.. ++|||||+|.+.++|++|+ .||+..++
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 35799999999999999999999999 6 777777755 4799999999999999999 89999999
Q ss_pred CeEEEEeecccC
Q psy15515 111 EKRLNIAPAIKK 122 (242)
Q Consensus 111 G~~l~V~~a~~~ 122 (242)
|+.|+|.++...
T Consensus 77 g~~i~v~~~~~~ 88 (172)
T 2g4b_A 77 GQSLKIRRPHDY 88 (172)
T ss_dssp TEECEEECCSSC
T ss_pred CceeeecCCccc
Confidence 999999987654
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.46 E-value=2.5e-13 Score=103.66 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=69.4
Q ss_pred CcEEEEcCCC--CCC---CHHHHHHHhhcCCCeEEEEEeeCC-----CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCe
Q psy15515 43 PKRVFVGGIT--STT---TEDELCELFSQYGIVKQVKIVVDR-----AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEK 112 (242)
Q Consensus 43 ~~~lfVgnLp--~~~---te~~L~~~F~~~G~i~~v~i~~~~-----~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~ 112 (242)
.+.|++.|+- .++ -++||++.|++||.|.+|+|+++. +++++||+||+|.+.++|.+|++.|||..++||
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 4689999983 222 358999999999999999999886 256789999999999999999999999999999
Q ss_pred EEEEeecccC
Q psy15515 113 RLNIAPAIKK 122 (242)
Q Consensus 113 ~l~V~~a~~~ 122 (242)
.|+|.++...
T Consensus 100 ~i~v~~~~~~ 109 (118)
T 3ue2_A 100 KVVAEVYDQE 109 (118)
T ss_dssp ECEEEEECHH
T ss_pred EEEEEEcChH
Confidence 9999997643
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=6.9e-13 Score=98.36 Aligned_cols=66 Identities=17% Similarity=0.234 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccCCC
Q psy15515 53 STTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKKQG 124 (242)
Q Consensus 53 ~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~~~ 124 (242)
.++++++|+++|++||.|.+|.|+ ++++|||||+|++.++|+.|++.+++ +.|+.|+|.|++.+..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 568999999999999999999998 35799999999999999999988554 6799999999987753
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.40 E-value=6.4e-13 Score=118.81 Aligned_cols=75 Identities=16% Similarity=0.273 Sum_probs=65.2
Q ss_pred CCCcEEEEcC--CCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeC---Ce--E
Q psy15515 41 VVPKRVFVGG--ITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFK---EK--R 113 (242)
Q Consensus 41 ~~~~~lfVgn--Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~---G~--~ 113 (242)
...++||||| |++.++|++|+++|++||+|.+|.+.. +||||||+|++.++|++|++.|||+++. |+ .
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 3456999999 578999999999999999999987754 4799999999999999999999999983 44 5
Q ss_pred EEEeecc
Q psy15515 114 LNIAPAI 120 (242)
Q Consensus 114 l~V~~a~ 120 (242)
|.|.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7888875
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.32 E-value=2.5e-12 Score=97.50 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=64.1
Q ss_pred CcEEEEcCCC--CCC--------CHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCe
Q psy15515 43 PKRVFVGGIT--STT--------TEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEK 112 (242)
Q Consensus 43 ~~~lfVgnLp--~~~--------te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~ 112 (242)
.+.|.+.|+= .+. -++||++.|++||.|+++.|.++. .+||+||+|.+.++|++|++.|||..++||
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4567777772 221 126889999999999999987653 589999999999999999999999999999
Q ss_pred EEEEeecccC
Q psy15515 113 RLNIAPAIKK 122 (242)
Q Consensus 113 ~l~V~~a~~~ 122 (242)
.|+|.++...
T Consensus 84 ~i~v~~~~~~ 93 (114)
T 3s6e_A 84 MITAAYVPLP 93 (114)
T ss_dssp ECEEEEECHH
T ss_pred EEEEEEEcHH
Confidence 9999998644
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.7e-10 Score=83.37 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=60.5
Q ss_pred cEEEEcCCC-----CCCCH---HHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEE
Q psy15515 44 KRVFVGGIT-----STTTE---DELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLN 115 (242)
Q Consensus 44 ~~lfVgnLp-----~~~te---~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~ 115 (242)
.+|+|.-.+ .+.++ .+|.+.|.+||.|..++++.| .+||+|.+.++|.+||+ |||..++||.|+
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNRTIT 79 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTEEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCeEEE
Confidence 378887665 23343 678999999999999999986 38999999999999997 999999999999
Q ss_pred EeecccC
Q psy15515 116 IAPAIKK 122 (242)
Q Consensus 116 V~~a~~~ 122 (242)
|+++.+.
T Consensus 80 V~lkt~d 86 (91)
T 2dnr_A 80 IALKSPS 86 (91)
T ss_dssp EEECCCS
T ss_pred EEeCCCC
Confidence 9998764
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=6.2e-10 Score=85.01 Aligned_cols=73 Identities=25% Similarity=0.319 Sum_probs=64.8
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcC-HHHHHHHHHHcC--CCEeCCeEEEEe
Q psy15515 42 VPKRVFVGGITST-TTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDS-EEEAKRLQKDSD--NIMFKEKRLNIA 117 (242)
Q Consensus 42 ~~~~lfVgnLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s-~e~A~~Al~~l~--~~~i~G~~l~V~ 117 (242)
...-|||+||+.+ +++++|+++|++||.|..|.+..+. -.|||+|.+ .++|..|++.|+ +.+|.|..++++
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 3458999999999 9999999999999999999998875 469999999 899999999994 678899888886
Q ss_pred ec
Q psy15515 118 PA 119 (242)
Q Consensus 118 ~a 119 (242)
..
T Consensus 92 vL 93 (121)
T 1owx_A 92 VL 93 (121)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.01 E-value=6.8e-10 Score=92.71 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=61.0
Q ss_pred CCHHHHHHHhhcCCCeEEEEEeeCC-----CCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEeecccC
Q psy15515 55 TTEDELCELFSQYGIVKQVKIVVDR-----AGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAPAIKK 122 (242)
Q Consensus 55 ~te~~L~~~F~~~G~i~~v~i~~~~-----~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~a~~~ 122 (242)
-.+++|++.|++||.|.++.|.++. +++++|++||+|.+.++|.+|++.|||..++||.|+|.+....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 3568999999999999999998654 4589999999999999999999999999999999999997643
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=2.4e-09 Score=77.78 Aligned_cols=69 Identities=22% Similarity=0.302 Sum_probs=59.5
Q ss_pred cEEEEcCCCC------CCCH---HHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEE
Q psy15515 44 KRVFVGGITS------TTTE---DELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRL 114 (242)
Q Consensus 44 ~~lfVgnLp~------~~te---~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l 114 (242)
.+|+|.-++. +.++ .+|.+.|..||.|..+++..|+ +||+|.+.++|.+||+ |||.+++||.|
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 3899988763 2443 5688999999999999999873 9999999999999997 99999999999
Q ss_pred EEeecc
Q psy15515 115 NIAPAI 120 (242)
Q Consensus 115 ~V~~a~ 120 (242)
+|++..
T Consensus 88 ~V~~k~ 93 (95)
T 1ufw_A 88 KISGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEeccC
Confidence 999754
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.53 E-value=5.3e-07 Score=66.93 Aligned_cols=74 Identities=11% Similarity=0.195 Sum_probs=67.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcC-----CCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEE
Q psy15515 40 TVVPKRVFVGGITSTTTEDELCELFSQY-----GIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRL 114 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~te~~L~~~F~~~-----G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l 114 (242)
+...++|-+-+||..+++..|+.+.+.+ |.+..+.+..|. +-|+|+|.+...|.+|.-.|+|.+|+|++|
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 3456789999999999999999999999 999999998874 789999999999999999999999999999
Q ss_pred EEee
Q psy15515 115 NIAP 118 (242)
Q Consensus 115 ~V~~ 118 (242)
+|.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9974
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.91 E-value=6.4e-05 Score=55.30 Aligned_cols=78 Identities=13% Similarity=0.058 Sum_probs=64.2
Q ss_pred CCCCcEEEEcCCCCCC-CH----HHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEE
Q psy15515 40 TVVPKRVFVGGITSTT-TE----DELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRL 114 (242)
Q Consensus 40 ~~~~~~lfVgnLp~~~-te----~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l 114 (242)
...+++|+|.||+.++ .. +.++++|..|+.+......+. -.-..|.|.+.++|.+|-..||+..++|+++
T Consensus 2 s~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 2 SSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp CSCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 3456799999998765 22 577899999998877766653 2456899999999999999999999999999
Q ss_pred EEeecccC
Q psy15515 115 NIAPAIKK 122 (242)
Q Consensus 115 ~V~~a~~~ 122 (242)
+|-++..-
T Consensus 77 r~YFgq~~ 84 (104)
T 1wey_A 77 KLYFAQTL 84 (104)
T ss_dssp EEECCCCS
T ss_pred EEEecCCC
Confidence 99999843
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=0.00037 Score=51.07 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=62.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcC-----CCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEE
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQY-----GIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLN 115 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~-----G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~ 115 (242)
...++|.|.|||..++++.|+-+|++- |.|++++... +-|+|+|.+.+.|++.++. ..+.|+|..|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 345699999999999999999999872 5778877643 6789999999999999964 46889999999
Q ss_pred EeecccCCCC
Q psy15515 116 IAPAIKKQGF 125 (242)
Q Consensus 116 V~~a~~~~~~ 125 (242)
|...-++...
T Consensus 78 V~P~~~~~~~ 87 (104)
T 2dhx_A 78 LRPAPPRAPA 87 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEcCCCCCcc
Confidence 9886666543
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.27 E-value=0.0017 Score=46.71 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=56.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-C-C-CcccEEEEEEcCHHHHHHHHHHcCCCEeC
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-A-G-ISKGYGFITFDSEEEAKRLQKDSDNIMFK 110 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~-g-~skg~gFV~F~s~e~A~~Al~~l~~~~i~ 110 (242)
++|-|.+||..+||+++.+.++.+..+........+ + + ..-.-|+|.|.+.+++....+.++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 478999999999999999999999888777776655 2 2 23467999999999999999999998764
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.99 E-value=0.0027 Score=45.99 Aligned_cols=53 Identities=21% Similarity=0.338 Sum_probs=45.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHc
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDS 104 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l 104 (242)
.-++| ++|.+....||.++|+.||. ..|+++.| --|||.|.+++.|..|+..+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET------TEEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC------CeEEEEecCHHHHHHHHHhc
Confidence 34555 99999999999999999994 47777777 58999999999999999866
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.94 E-value=0.0045 Score=46.54 Aligned_cols=73 Identities=21% Similarity=0.316 Sum_probs=57.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCC-eEEEEeec
Q psy15515 41 VVPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKE-KRLNIAPA 119 (242)
Q Consensus 41 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G-~~l~V~~a 119 (242)
...+-|.|-+.+... -..+.+.|++||.|++..... ...+-.|.|.++.+|++||. .||..|+| -.|-|.+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 346688888999875 455666799999999887622 24688999999999999995 49999985 66777775
Q ss_pred c
Q psy15515 120 I 120 (242)
Q Consensus 120 ~ 120 (242)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.78 E-value=0.002 Score=46.80 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=46.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q psy15515 45 RVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105 (242)
Q Consensus 45 ~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~ 105 (242)
.||+-++|.+....||.++|+.|| -..|+++.| --|||.|.+++.|..|+..+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSE-EEEEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccC-CEEEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 344449999999999999999999 567888877 589999999999999998764
No 216
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.44 E-value=0.00098 Score=51.53 Aligned_cols=41 Identities=15% Similarity=0.033 Sum_probs=37.2
Q ss_pred CCcccEEEEEEcCHHHHHHHHHHc-CCCEeCCeEEEEeecccC
Q psy15515 81 GISKGYGFITFDSEEEAKRLQKDS-DNIMFKEKRLNIAPAIKK 122 (242)
Q Consensus 81 g~skg~gFV~F~s~e~A~~Al~~l-~~~~i~G~~l~V~~a~~~ 122 (242)
.+-+|+++|+|.+.++|++|++.| |+.+++| .+++.++..+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 356899999999999999999999 9999999 9999988764
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.12 E-value=0.0044 Score=47.34 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=54.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEE-EEEeeC------------C-CC-CcccEEEEEEcCHHHHHHHHHHcCCC
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQ-VKIVVD------------R-AG-ISKGYGFITFDSEEEAKRLQKDSDNI 107 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~-v~i~~~------------~-~g-~skg~gFV~F~s~e~A~~Al~~l~~~ 107 (242)
+..|.|-+.|.+.... +.+.|++||.|++ ..+..+ + -+ ....+-.|+|.++.+|++||. .||.
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 3467777888765554 5557999999876 221110 0 00 124678999999999999995 5999
Q ss_pred EeCCeEEEEeeccc
Q psy15515 108 MFKEKRLNIAPAIK 121 (242)
Q Consensus 108 ~i~G~~l~V~~a~~ 121 (242)
.|+|..|-|.+..+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888887653
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.00 E-value=0.0042 Score=48.16 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=28.9
Q ss_pred EEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCE
Q psy15515 72 QVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIM 108 (242)
Q Consensus 72 ~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~ 108 (242)
.++|+.+.. +++|||||+|.+.++|++|++.+++..
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccC
Confidence 356666543 589999999999999999998887543
No 219
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.85 E-value=0.0075 Score=43.69 Aligned_cols=68 Identities=12% Similarity=0.163 Sum_probs=50.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCC-C-CC-cccEEEEEEcCHHHHHHHHHHcCCCEeC
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDR-A-GI-SKGYGFITFDSEEEAKRLQKDSDNIMFK 110 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~-g~-skg~gFV~F~s~e~A~~Al~~l~~~~i~ 110 (242)
.-+|-|..||+.+||+++.+.++.+-++........+ + +. .-..|+|.|.+.|+.....+.++|+.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 3479999999999999998888776554433333222 1 11 2356899999999999999999998764
No 220
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.41 E-value=0.0071 Score=55.72 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=42.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHH
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKD 103 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~ 103 (242)
+.|||. .+..+++.+|.+.|++||.|.++.+..++ .-|+.|+|.+.++++.++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHhc
Confidence 689997 79999999999999999999998877653 36999999999999977643
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.23 E-value=2.5 Score=39.19 Aligned_cols=55 Identities=20% Similarity=0.324 Sum_probs=45.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q psy15515 43 PKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSD 105 (242)
Q Consensus 43 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~ 105 (242)
+..++|+ ++..+...+|.+.|+.||. .+|+++.+ ..+||.|.+.+.|..+++.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 4566676 8888889999999999995 46666654 579999999999999999885
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=81.47 E-value=2.3 Score=28.43 Aligned_cols=68 Identities=12% Similarity=0.200 Sum_probs=42.4
Q ss_pred EEEEcC-CCCCCCHHHHHHHhhcCC-----CeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCCEeCCeEEEEee
Q psy15515 45 RVFVGG-ITSTTTEDELCELFSQYG-----IVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNIMFKEKRLNIAP 118 (242)
Q Consensus 45 ~lfVgn-Lp~~~te~~L~~~F~~~G-----~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~~i~G~~l~V~~ 118 (242)
++||+. --..+...+|..++..-+ .|-.+++.. .|.||+-.. +.++.+++.|++..+.|+.++|+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d-------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD-------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS-------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC-------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEE
Confidence 566642 234556677777776544 345666643 588988764 567888999999999999999987
Q ss_pred cc
Q psy15515 119 AI 120 (242)
Q Consensus 119 a~ 120 (242)
++
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=51.64 E-value=60 Score=22.82 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=52.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCC-------EeCCeEE
Q psy15515 42 VPKRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNI-------MFKEKRL 114 (242)
Q Consensus 42 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~-------~i~G~~l 114 (242)
+..-|-|-|+|..+-..++.-.....|.--.|..+. |-|.+.|.+.++...|+..|-++ ++.|...
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid-------gqamirfqnsdeqrlaiqkllnhnnnklqieirgqic 83 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID-------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQIC 83 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS-------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec-------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceee
Confidence 344667889999998888877777777666666553 78999999999999999876222 4667766
Q ss_pred EEeec
Q psy15515 115 NIAPA 119 (242)
Q Consensus 115 ~V~~a 119 (242)
.|--.
T Consensus 84 dvist 88 (129)
T 4eyt_A 84 DVIST 88 (129)
T ss_dssp EEECC
T ss_pred eeeec
Confidence 66433
No 224
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=39.94 E-value=4.4 Score=31.15 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=16.4
Q ss_pred HHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEc
Q psy15515 58 DELCELFSQYGIVKQVKIVVDRAGISKGYGFITFD 92 (242)
Q Consensus 58 ~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~ 92 (242)
+|+.++|...|.|+... + .||||||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn---~----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN---V----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE---T----TTTEEEEEEE
T ss_pred CcccccccceeEEEEEE---C----CCCeeEEeeC
Confidence 45666777777665542 2 3799999865
No 225
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=29.92 E-value=1e+02 Score=23.33 Aligned_cols=43 Identities=19% Similarity=0.381 Sum_probs=30.5
Q ss_pred HHHhhcCCCeEEEEEeeCC--CCCc--------------ccEEEEEEcCHHHHHHHHHH
Q psy15515 61 CELFSQYGIVKQVKIVVDR--AGIS--------------KGYGFITFDSEEEAKRLQKD 103 (242)
Q Consensus 61 ~~~F~~~G~i~~v~i~~~~--~g~s--------------kg~gFV~F~s~e~A~~Al~~ 103 (242)
-++|..||.+.-+...-|. .|+. --|.+|+|.+++..+++.++
T Consensus 51 ~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 51 APLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 4688999987766554442 3332 33889999999998888754
No 226
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=28.77 E-value=1.1e+02 Score=19.05 Aligned_cols=54 Identities=6% Similarity=0.001 Sum_probs=41.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHH
Q psy15515 44 KRVFVGGITSTTTEDELCELFSQYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKD 103 (242)
Q Consensus 44 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~ 103 (242)
.++.|.++.=.--...+++.+.+ ..|..+.+-.. .+-+.|+|.+.++...+|+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----CCEEEEEECCHHHHHHHHHH
Confidence 47888888877777889999988 88888877543 36677888766677777765
No 227
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=28.65 E-value=1.2e+02 Score=23.81 Aligned_cols=37 Identities=14% Similarity=0.365 Sum_probs=26.6
Q ss_pred CCHHHHHHHh--hcCCCeEEEEEeeCCCCCcccEEEEEEcC
Q psy15515 55 TTEDELCELF--SQYGIVKQVKIVVDRAGISKGYGFITFDS 93 (242)
Q Consensus 55 ~te~~L~~~F--~~~G~i~~v~i~~~~~g~skg~gFV~F~s 93 (242)
....+|++.| ..|..+. ++...+..| ++|+++|+|.+
T Consensus 33 ~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~ 71 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNK 71 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCS
T ss_pred CCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecC
Confidence 3447888877 8897654 555666544 67999999974
No 228
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=27.75 E-value=87 Score=24.15 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=29.1
Q ss_pred CCHHHHHHHhhcCCCe---EEEEEeeCC-CCCcccEEEE
Q psy15515 55 TTEDELCELFSQYGIV---KQVKIVVDR-AGISKGYGFI 89 (242)
Q Consensus 55 ~te~~L~~~F~~~G~i---~~v~i~~~~-~g~skg~gFV 89 (242)
.++++|+++-.+.|++ .++.+..|. +|+.+.+||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 5899999999999987 466777786 8999988875
No 229
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=27.63 E-value=9.8 Score=29.25 Aligned_cols=11 Identities=64% Similarity=0.797 Sum_probs=8.6
Q ss_pred cccEEEEEEcC
Q psy15515 83 SKGYGFITFDS 93 (242)
Q Consensus 83 skg~gFV~F~s 93 (242)
.||||||+-.+
T Consensus 73 ~KGfGFI~~dd 83 (147)
T 3aqq_A 73 SKGHGFITPAD 83 (147)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEeccCC
Confidence 37999998764
No 230
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=25.99 E-value=58 Score=30.81 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHhh----cCCCeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHc
Q psy15515 50 GITSTTTEDELCELFS----QYGIVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDS 104 (242)
Q Consensus 50 nLp~~~te~~L~~~F~----~~G~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l 104 (242)
....+.+..||..+|- .+|-|.++.+-.-+.-..+.++++.|.+.+++.+++..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 4556666678888882 678888887755444445678899999999999988765
No 231
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=30.73 E-value=15 Score=26.42 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=33.3
Q ss_pred CCCHHHHHHHhhcCCCeEEEEEeeCC-CCCcccEEE--EEEcCHHHHHHHHHHcCCC
Q psy15515 54 TTTEDELCELFSQYGIVKQVKIVVDR-AGISKGYGF--ITFDSEEEAKRLQKDSDNI 107 (242)
Q Consensus 54 ~~te~~L~~~F~~~G~i~~v~i~~~~-~g~skg~gF--V~F~s~e~A~~Al~~l~~~ 107 (242)
..+++++.++..+.+ +..+.+.+.. +|+. .|.. -.|.+.++|.+|++.|...
T Consensus 33 ~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~ 87 (106)
T 2lfv_A 33 SSNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPAD 87 (106)
Confidence 345667777777776 3445555433 3433 3332 2689999999999988754
No 232
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=24.44 E-value=1.1e+02 Score=21.75 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHhhc-CC---CeEEEEEeeCC--CCCcccEEEEEEcCHHHHHHH
Q psy15515 53 STTTEDELCELFSQ-YG---IVKQVKIVVDR--AGISKGYGFITFDSEEEAKRL 100 (242)
Q Consensus 53 ~~~te~~L~~~F~~-~G---~i~~v~i~~~~--~g~skg~gFV~F~s~e~A~~A 100 (242)
...+..+|++.+.+ |+ .+..|.=++.. .|++.|||.| |.+.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45677777766543 44 33444333333 5667788765 7777776654
No 233
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=23.91 E-value=1.3e+02 Score=21.51 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=26.8
Q ss_pred CCCHHHHHHHhhc-CC---CeEEEEEeeCC--CCCcccEEEEEEcCHHHHHH
Q psy15515 54 TTTEDELCELFSQ-YG---IVKQVKIVVDR--AGISKGYGFITFDSEEEAKR 99 (242)
Q Consensus 54 ~~te~~L~~~F~~-~G---~i~~v~i~~~~--~g~skg~gFV~F~s~e~A~~ 99 (242)
..+..+|++-+.+ |+ .+..|.=++.. .|++.|||.| |.+.+.|.+
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 5567777765543 43 33344333334 5667788865 788877765
No 234
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=23.24 E-value=1.2e+02 Score=21.48 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHhhc-CC---CeEEEEEeeCC--CCCcccEEEEEEcCHHHHHH
Q psy15515 53 STTTEDELCELFSQ-YG---IVKQVKIVVDR--AGISKGYGFITFDSEEEAKR 99 (242)
Q Consensus 53 ~~~te~~L~~~F~~-~G---~i~~v~i~~~~--~g~skg~gFV~F~s~e~A~~ 99 (242)
...+..+|++.+.+ |+ .+..|.=++.. .|++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677777765543 33 33444333333 5677788865 777777654
No 235
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=20.29 E-value=1.5e+02 Score=21.07 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=25.8
Q ss_pred CeEEEEEeeCCCCCcccEEEEEEcCHHHHHHHHHHcCCC
Q psy15515 69 IVKQVKIVVDRAGISKGYGFITFDSEEEAKRLQKDSDNI 107 (242)
Q Consensus 69 ~i~~v~i~~~~~g~skg~gFV~F~s~e~A~~Al~~l~~~ 107 (242)
.|.++....+ -+||-|||=.+..+...|++.+.+.
T Consensus 40 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEH----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTT----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCC----CceEEEEEeCCHHHHHHHHhcccce
Confidence 3555544332 5899999999999999999776543
Done!